Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS2	9509	broad.mit.edu;bcgsc.ca	37	5	178541281	178541281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ADAMTS2	NM_014244	exon22	c.G3223A	p.V1075I	ACAAGACTTCCAT	.	162.0	41.0	119.0	2.0	.	228
APC	324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	112111324	112111324	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	APC,NS,carcinoma,-2	APC	NM_001127511	exon4	c.453-2A>G	.	AAAAATAGGTCAT	.	49.0	21.0	50.0	0.0	.	12026
ARHGEF1	9138	broad.mit.edu;bcgsc.ca	37	19	42409130	42409130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ARHGEF1	NM_199002	exon23	c.T2236G	p.W746G	TTTACCTGGGACC	.	63.0	7.0	46.0	0.0	.	293
BET1	10282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	93628605	93628605	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	BET1	NM_005868	exon2	c.T21C	p.G7G	TCCTTCACCTGCA	.	46.0	16.0	40.0	0.0	.	90
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	462103	462103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	EXOC3	NM_007277	exon8	c.G1420A	p.E474K	TATAAAGAAGAGC	.	271.0	75.0	149.0	2.0	.	90
FAM169A	26049	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74100401	74100401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	FAM169A	NM_015566	exon8	c.A829G	p.M277V	CAGACATAGGTCT	.	22.0	5.0	20.0	0.0	.	22
HDAC3	8841	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	141007750	141007750	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HDAC3	NM_003883	exon9	c.C696G	p.Y232X	GTGCTTGTAACCT	.	175.0	53.0	121.0	1.0	.	227
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188410	152188410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HRNR	NM_001009931	exon3	c.C5695A	p.Q1899K	CGTGTTGTTCGTA	.	2282.0	98.0	1303.0	2.0	.	93
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128003101	128003101	+	Missense_Mutation	SNP	G	G	T	rs200897884	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	HSPA5	NM_005347	exon2	c.C208A	p.P70T	CTTCAGGAGTGAA	.	235.0	63.0	168.0	1.0	G|0.999;A|0.000	230
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	55260044	55260049	+	In_Frame_Del	DEL	GACTTC	GACTTC	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GACTTC	GACTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	IL6ST	NM_175767	exon6	c.583_588del	p.195_196del	TACCCAGACTTCA	.	135.0	14.0	113.0	0.0	.	290
LIF	3976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30640773	30640773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LIF	NM_002309	exon2	c.G169A	p.G57S	CACTGCCATTGAG	.	221.0	11.0	157.0	0.0	.	650
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	68686847	68686847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	LRRTM3	NM_178011	exon2	c.G173C	p.S58T	CCTCAAGTATATC	.	59.0	21.0	48.0	0.0	.	93
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50794186	50794186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	MYH14	NM_001145809	exon36	c.C5008T	p.R1670C	AAGCAGCGCACTC	.	270.0	86.0	165.0	0.0	.	23
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115374663	115374663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	NRAP	NM_001261463	exon28	c.T3121A	p.Y1041N	GTTTATAGCCACC	.	235.0	73.0	146.0	0.0	.	522
OR4M2	390538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22369299	22369299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	OR4M2	NM_001004719	exon1	c.T724A	p.C242S	TCCACCTGCTATT	.	333.0	69.0	272.0	0.0	.	69
PPP1R12B	4660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202462434	202462434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PPP1R12B	NM_002481	exon15	c.C2134A	p.L712M	AGGAGTCTGGATG	.	394.0	144.0	277.0	0.0	.	229
PTN	5764	hgsc.bcm.edu;bcgsc.ca	37	7	136938301	136938301	+	Silent	SNP	G	G	T	rs149012204	alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	PTN	NM_002825	exon3	c.C199A	p.R67R	CCTCCCGTGTGCC	.	82.0	4.0	60.0	0.0	G|1.000;A|0.000	516
RPS6KA1	6195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26881119	26881119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	RPS6KA1	NM_001006665	exon8	c.G673A	p.E225K	GACCACGAGAAGA	.	232.0	75.0	150.0	0.0	.	510
SAMD4B	55095	broad.mit.edu;bcgsc.ca	37	19	39866423	39866423	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SAMD4B	NM_018028	exon7	c.C801T	p.H267H	CGATCACGCACCT	.	61.0	6.0	41.0	0.0	.	90
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108929239	108929239	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SART3	NM_014706	exon12	c.A1452G	p.R484R	GCACAGTCGAGCC	.	163.0	25.0	99.0	0.0	.	91
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123815842	123815842	+	Silent	SNP	C	C	T	rs74679372	byfrequency;alternate_allele	TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SBNO1	NM_001167856	exon7	c.G990A	p.T330T	TGCTATCGTCCTT	.	104.0	39.0	63.0	0.0	C|0.999;A|0.001	292
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38791583	38791583	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SCN10A	NM_006514	exon12	c.C1848A	p.I616I	GGTTATGATACTG	.	134.0	38.0	105.0	0.0	.	99
SLC19A1	6573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46951887	46951887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	SLC19A1	NM_001205206	exon3	c.T365C	p.M122T	AGCTCCATGAGCT	.	55.0	7.0	40.0	0.0	.	90
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156255146	156255146	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TMEM79	NM_032323	exon2	c.A129C	p.G43G	CCCGGGAGCTGAG	.	121.0	38.0	92.0	0.0	.	90
TUBB2A	7280	hgsc.bcm.edu;broad.mit.edu	37	6	3154966	3154966	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	TUBB2A	NM_001069	exon4	c.469delG	p.E157fs	ACTCTTCCCGGAT	.	321.0	69.0	223.0	0.0	.	92
WHSC1L1	54904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38133282	38133282	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WHSC1L1	NM_023034	exon24	c.T4191A	p.S1397S	CAGTGCAGAGGGA	.	70.0	23.0	45.0	0.0	.	658
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49374348	49374348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	WNT1	NM_005430	exon3	c.G500T	p.W167L	GGCACTGGGGGGG	.	145.0	52.0	92.0	0.0	.	1083
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	57012123	57012123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF451	NM_001031623	exon10	c.G1240A	p.D414N	TCTTCTGACTTGC	.	82.0	7.0	65.0	0.0	.	93
ZNF800	168850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127026146	127026146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	ZNF800	NM_176814	exon3	c.G125C	p.G42A	TGAATACCAGATT	.	41.0	10.0	34.0	0.0	.	23
TOMM34	10953	broad.mit.edu;bcgsc.ca	37	20	43588912	43588913	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-DD-A4NP-01A-11D-A28X-10	TCGA-DD-A4NP-10A-01D-A28X-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e6e1c91-c07f-404f-9f9c-0fc66616a63e	563ad2ed-2b5a-43e0-9e0d-3f875800b598	.	.	.	.	.	p.R21L	GCCGTTGCGGAAA	.	257.0	81.0	134.0	1.0	.	.