Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151545468	151545468	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AADAC	NM_001086	exon5	c.A708G	p.S236S	AAATTCAAATTTT	.	122.0	21.0	111.0	0.0	.	280
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79100253	79100253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	AATK	NM_001080395	exon7	c.C729A	p.H243Q	ATGAAGGTGCAGG	.	90.0	14.0	68.0	0.0	.	933
ACVR2B	93	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38519668	38519668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ACVR2B	NM_001106	exon4	c.T407C	p.L136P	CCCTGCTCACGGT	.	42.0	8.0	28.0	0.0	.	942
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167849404	167849404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADCY10	NM_018417	exon11	c.G1165A	p.G389R	CAATCCCACTGGC	.	144.0	18.0	103.0	0.0	.	493
ADSL	158	hgsc.bcm.edu;mdanderson.org	37	22	40742563	40742563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ADSL	NM_001123378	exon1	c.A1G	p.M1V	GTTGGGATGGCGG	.	27.0	7.0	9.0	0.0	.	652
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27101142	27101142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ARID1A	NM_006015	exon18	c.A4424C	p.N1475T	AGCAAAACATGCC	.	57.0	11.0	38.0	0.0	.	584
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176999968	176999968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ASTN1	NM_004319	exon4	c.G986A	p.R329K	CGCTTTCTCTGGC	.	84.0	15.0	79.0	0.0	.	319
ATP1A1OS	84852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116948480	116948480	+	RNA	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	.	.	.	.	CTCTACATTTGTC	.	69.0	9.0	55.0	0.0	.	.
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34014331	34014331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	BMPER	NM_133468	exon7	c.G511A	p.V171M	GAGGGTGTGCAGT	.	129.0	14.0	127.0	0.0	.	92
CDS1	1040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85540553	85540553	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CDS1	NM_001263	exon5	c.T447C	p.F149F	GTACTTTCTATTG	.	106.0	13.0	93.0	0.0	.	155
CHD4	1108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6690892	6690892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CHD4	NM_001273	exon31	c.C4604T	p.S1535L	GAGGGTGACCCTG	.	116.0	23.0	71.0	1.0	.	228
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	49853423	49853444	+	Frame_Shift_Del	DEL	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	AATGGAACAGCTGGCTTATTAC	AATGGAACAGCTGGCTTATTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CLCN5	NM_001127898	exon12	c.1626_1647del	p.542_549del	AGTAGGAATGGAA	.	93.0	10.0	123.0	0.0	.	132
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	114031312	114031312	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CSMD3	NM_052900	exon6	c.T1014C	p.F338F	AGCACTAAATCCA	.	97.0	6.0	63.0	0.0	.	1132
CTTNBP2	83992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117398014	117398014	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	CTTNBP2	NM_033427	exon11	c.G3183A	p.P1061P	TGACCACGGCACA	.	44.0	5.0	39.0	0.0	.	94
DEPDC1	55635	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	68954709	68954709	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DEPDC1	NM_017779	exon4	c.C480T	p.G160G	TTTCTCGCCATTT	.	277.0	39.0	218.0	2.0	.	90
DIEXF	27042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210015748	210015748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DIEXF	NM_014388	exon9	c.A1624G	p.I542V	GCCCAGATCAACT	.	115.0	15.0	53.0	0.0	.	91
DPF1	8193	broad.mit.edu;mdanderson.org	37	19	38713010	38713010	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	DPF1	NM_001135155	exon3	c.C366T	p.C122C	GTACTCGCAGGGC	.	77.0	13.0	45.0	1.0	.	90
EPS15L1	58513	broad.mit.edu;mdanderson.org	37	19	16545246	16545246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EPS15L1	NM_021235	exon7	c.G428T	p.G143V	AGCAAACCATTGA	.	73.0	9.0	56.0	1.0	.	95
EYA4	2070	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133846297	133846297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	EYA4	NM_004100	exon19	c.G1744A	p.E582K	GGAAAAGAAAGTT	.	254.0	45.0	175.0	1.0	.	578
FBXO15	201456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	71749184	71749184	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	FBXO15	NM_001142958	exon9	c.A1241T	p.D414V	AAAATATCAGTTT	.	236.0	31.0	194.0	1.0	.	229
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154311018	154311018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	GEMIN5	NM_015465	exon5	c.G781A	p.G261R	TCTTACCTCGGCC	.	91.0	27.0	53.0	0.0	.	228
IL23A	51561	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56733526	56733526	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	IL23A	NM_016584	exon3	c.G313C	p.G105R	CTGCTAGGATCGG	.	56.0	18.0	57.0	1.0	.	90
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15452356	15452356	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	JARID2	NM_004973	exon4	c.C443G	p.S148C	ACCTCTCTAAAAG	.	71.0	21.0	55.0	0.0	.	228
KCTD21	283219	broad.mit.edu;mdanderson.org	37	11	77885144	77885144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KCTD21	NM_001029859	exon2	c.T457G	p.C153G	AGAGGCAGGAGGT	.	37.0	8.0	44.0	2.0	.	69
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610300	10610300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KEAP1	NM_012289	exon2	c.T410C	p.I137T	AATTCAATGAGGC	.	53.0	5.0	41.0	0.0	.	637
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73960186	73960186	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	KIAA2022	NM_001008537	exon3	c.T4206C	p.N1402N	TTTCCCATTGCTT	.	76.0	14.0	39.0	0.0	.	183
MED23	9439	broad.mit.edu;ucsc.edu	37	6	131924170	131924170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MED23	NM_015979	exon17	c.G1949A	p.C650Y	GCTCACCAAAGAT	.	89.0	16.0	71.0	1.0	.	24
MRGBP	55257	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61429990	61429990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_018270	exon3	c.C322A	p.P108T	GTCCTTCCAGAAG	.	109.0	20.0	82.0	1.0	.	.
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102076403	102076403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYBPC1	NM_002465	exon30	c.C3455T	p.T1152I	TAAATACCCCTGG	.	144.0	31.0	99.0	0.0	.	94
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10395803	10395803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	MYH1	NM_005963	exon40	c.C5750T	p.A1917V	GACTCAGCAATGT	.	124.0	20.0	75.0	0.0	.	171
OR2AG2	338755	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	6789560	6789560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OR2AG2	NM_001004490	exon1	c.C629T	p.P210L	GAAATGGGGAGCA	.	59.0	7.0	65.0	1.0	.	71
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	29598311	29598311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	OVCH1	NM_183378	exon23	c.C2781A	p.Y927X	CATTGAGTAAAGT	.	91.0	14.0	55.0	0.0	.	210
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140792839	140792839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_032090	exon1	c.C97T	p.R33W	GGAGCCCGGCAGA	.	81.0	17.0	64.0	0.0	.	.
PITPNM1	9600	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	67261260	67261260	+	Silent	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PITPNM1	NM_004910	exon21	c.C3057A	p.G1019G	CTCCGTGCCGCGG	.	59.0	9.0	58.0	0.0	.	227
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	105121549	105121549	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	PUS7	NM_019042	exon9	c.T1125C	p.Y375Y	CATTCCATAGTAG	.	122.0	24.0	98.0	0.0	.	90
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41816168	41816168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RPAP1	NM_015540	exon17	c.A2237G	p.D746G	GCAGAATCACTAC	.	59.0	8.0	44.0	0.0	.	153
RUNX1T1	862	ucsc.edu;mdanderson.org	37	8	92998419	92998419	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX1T1	NM_001198679	exon9	c.A1389G	p.K463K	GCCACCTTTTTTT	.	82.0	11.0	93.0	2.0	.	1196
RUNX2	860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	45390432	45390432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	RUNX2	NM_001024630	exon3	c.A161C	p.Q54P	AGCAACAGCAGCA	.	73.0	11.0	58.0	0.0	.	417
SALL1	6299	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	51173574	51173574	+	Silent	SNP	A	A	C	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SALL1	NM_002968	exon2	c.T2559G	p.S853S	AGGCGAAGAGGAT	.	69.0	10.0	76.0	1.0	.	98
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133997208	133997208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SEC24A	NM_001252231	exon2	c.G497T	p.S166I	ATACAAGTTTAAC	.	113.0	15.0	93.0	0.0	.	68
SHCBP1L	81626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182922155	182922155	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SHCBP1L	NM_030933	exon1	c.114delC	p.T38fs	CAGGGTGGTCGCG	.	64.0	14.0	45.0	0.0	.	91
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62782428	62782428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC22A8	NM_001184732	exon2	c.G3A	p.M1I	GAAGGTCATGGCA	.	39.0	11.0	28.0	0.0	.	93
SLC4A5	57835	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74482906	74482906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SLC4A5	NM_021196	exon8	c.A1021T	p.T341S	ACCTGGTGGGGAC	.	38.0	9.0	32.0	0.0	.	98
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53722106	53722106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_152860	exon2	c.C1120T	p.R374C	GGGTGCGCTGGTG	.	45.0	18.0	39.0	0.0	.	.
SPG7	6687	hgsc.bcm.edu;mdanderson.org	37	16	89574985	89574985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPG7	NM_199367	exon1	c.G160A	p.E54K	CTCGCCGAGGCTG	.	34.0	6.0	16.0	0.0	.	226
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65241980	65241980	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	SPTB	NM_001024858	exon22	c.C4705T	p.L1569L	CCCGCAGCCTGTC	.	45.0	9.0	35.0	0.0	.	100
TST	7263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37414605	37414605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	TST	NM_003312	exon2	c.T169C	p.S57P	AGAAAGAGGCGCC	.	40.0	4.0	41.0	0.0	.	90
USP40	55230	broad.mit.edu;bcgsc.ca	37	2	234442314	234442314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	USP40	NM_018218	exon10	c.C1315A	p.Q439K	AAATTTGCTGGTC	.	79.0	5.0	101.0	0.0	.	455
WEE1	7465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9597784	9597784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	WEE1	NM_003390	exon3	c.G790A	p.G264S	TCCTGTGGTGAAG	.	149.0	21.0	143.0	0.0	.	1404
XKR6	286046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10782237	10782237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	XKR6	NM_173683	exon2	c.C868A	p.L290M	GGCGCAGCATGTT	.	44.0	10.0	27.0	0.0	.	92
YIPF7	285525	ucsc.edu;bcgsc.ca	37	4	44626734	44626734	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	.	NM_182592	exon5	c.C564T	p.A188A	CAGCAAGGCATGA	.	217.0	48.0	166.0	2.0	.	.
ZNF630	57232	broad.mit.edu;bcgsc.ca	37	X	47919574	47919574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF630	NM_001037735	exon5	c.A257T	p.E86V	GAAGATTCAAGGC	.	78.0	16.0	78.0	2.0	.	131
ZNF839	55778	broad.mit.edu;ucsc.edu	37	14	102807765	102807765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NR-01A-11D-A30V-10	TCGA-DD-A4NR-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	083000f9-e8e4-4d44-a4b3-74a624a24186	ba98edfd-3301-4ba6-8d12-38e87d1f6bfa	.	ZNF839	NM_018335	exon8	c.T2033G	p.L678R	CGCAGCTTCAGGC	.	86.0	15.0	66.0	1.0	.	91