Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 89400397 89400397 + Silent SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ACAN NM_001135 exon12 c.G4581A p.R1527R CAGCAGGCTCCCT . 42.0 38.0 64.0 0.0 . 25 ACSL5 51703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 114168208 114168208 + Missense_Mutation SNP C C G rs140011392 alternate_allele TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ACSL5 NM_016234 exon6 c.C629G p.T210R GTTACACGTACTC . 153.0 68.0 156.0 0.0 C|1.000;T|0.000 154 ADRBK1 156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 67046702 67046702 + Missense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ADRBK1 NM_001619 exon3 c.C222A p.N74K CCTGAACCACCTG . 96.0 37.0 100.0 0.0 . 521 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 73676478 73676478 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ALMS1 NM_015120 exon8 c.G2821A p.A941T TTGGCTGCCCAGA . 254.0 93.0 185.0 0.0 . 142 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 46246151 46246151 + Missense_Mutation SNP T T G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ARID2 NM_152641 exon15 c.T4245G p.I1415M AAGAATTTCTAAT . 155.0 63.0 163.0 0.0 . 100 ATP2B4 493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203683382 203683382 + Missense_Mutation SNP A A C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ATP2B4 NM_001001396 exon15 c.A2383C p.K795Q CTGAAGAAAGCGG . 60.0 28.0 42.0 0.0 . 517 BCL6 604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 187447680 187447680 + Silent SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . BCL6 NM_001134738 exon4 c.C513T p.S171S AGGGGCGCTCCTC . 36.0 34.0 72.0 0.0 . 848 C11orf40 143501 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 4592676 4592676 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . C11orf40 NM_144663 exon4 c.A631G p.N211D AGTAGTTCACATC . 73.0 15.0 72.0 0.0 . 92 C3 718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6714382 6714382 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . C3 NM_000064 exon5 c.G580A p.D194N GAATGTCCCAAGA . 101.0 56.0 79.0 0.0 . 95 C4A 720 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 31997490 31997490 + Missense_Mutation SNP A A C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . C4A NM_007293 exon29 c.A3824C p.H1275P TGCTTCACGAGGG . 283.0 60.0 293.0 0.0 . 44 C5orf34 375444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 43492341 43492341 + Missense_Mutation SNP A A G rs145050535 TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . C5orf34 NM_198566 exon10 c.T1556C p.I519T TGTTCAATCTGAA . 429.0 181.0 414.0 0.0 A|1.000;G|0.000 153 C9 735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 39308341 39308341 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . C9 NM_001737 exon8 c.G1231A p.G411S CTCTACCCTCTCC . 287.0 119.0 324.0 0.0 . 90 CACNG1 786 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65040955 65040955 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CACNG1 NM_000727 exon1 c.G179A p.R60H CCAAGCGCATCCC . 31.0 11.0 25.0 1.0 . 90 CALCOCO1 57658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 54118936 54118936 + Nonsense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CALCOCO1 NM_020898 exon2 c.G91T p.E31X GACATTCCACCTT . 135.0 58.0 117.0 0.0 . 91 CCDC146 57639 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 76796998 76796998 + Missense_Mutation SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CCDC146 NM_020879 exon2 c.A13G p.S5G GACAGTAGCACAG . 486.0 155.0 492.0 0.0 . 70 CCR2 729230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 46399400 46399400 + Missense_Mutation SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CCR2 NM_001123041 exon2 c.A382G p.I128V GGCGGAATCTTCT . 180.0 82.0 178.0 0.0 . 568 CD4 920 broad.mit.edu;bcgsc.ca 37 12 6926465 6926465 + Silent SNP G G C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CD4 NM_000616 exon7 c.G1125C p.S375S TGACTCGGGACAG . 69.0 9.0 75.0 0.0 . 90 CD5 921 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 60882526 60882526 + Splice_Site SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CD5 NM_014207 exon2 c.56-2A>G . TTCTGCAGTCGCT . 23.0 14.0 25.0 1.0 . 91 CD9 928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6342629 6342629 + Missense_Mutation SNP T T G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CD9 NM_001769 exon4 c.T325G p.W109G GCCATCTGGGGAT . 83.0 41.0 93.0 0.0 . 91 CHMP6 79643 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 78968447 78968447 + Nonsense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CHMP6 NM_024591 exon2 c.G130T p.E44X GAGCGCGAGCGCG . 79.0 33.0 63.0 0.0 . 91 CHST11 50515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 105151023 105151023 + Nonsense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CHST11 NM_018413 exon3 c.C501A p.Y167X CCAGTACAGCATC . 71.0 31.0 65.0 0.0 . 90 CHURC1 91612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 65398946 65398946 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CHURC1 NM_145165 exon4 c.T421C p.X141Q TTATTCTAAGGAT . 131.0 31.0 109.0 0.0 . 91 CYP2R1 120227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 14902228 14902228 + Missense_Mutation SNP T T G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . CYP2R1 NM_024514 exon3 c.A454C p.K152Q AAGACTTTTGGCC . 141.0 60.0 121.0 0.0 . 91 DMKN 93099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35992755 35992755 + Silent SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . DMKN NM_001035516 exon1 c.C51T p.G17G GGCCAGGCCCAGC . 30.0 8.0 42.0 0.0 . 155 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 13913898 13913898 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . DNAH5 NM_001369 exon11 c.A1490G p.Q497R GAATCTTGCAGGA . 112.0 59.0 102.0 0.0 . 182 DOCK4 9732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 111449457 111449457 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . DOCK4 NM_014705 exon29 c.A3007G p.I1003V CCCAGATCTAAAA . 50.0 30.0 70.0 0.0 . 26 DOT1L 84444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2217014 2217014 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . DOT1L NM_032482 exon21 c.G2469T p.M823I CAGCATGAAGCTG . 49.0 21.0 68.0 0.0 . 132 DPP6 1804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154645526 154645526 + Missense_Mutation SNP C C G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . DPP6 NM_130797 exon17 c.C1703G p.T568R ACACAACAGATAA . 103.0 35.0 113.0 0.0 . 652 E2F3 1871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 20481488 20481488 + Missense_Mutation SNP T T G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . E2F3 NM_001949 exon3 c.T557G p.L186R GTCTGCTCACCAA . 57.0 25.0 69.0 0.0 . 414 EDEM2 55741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33703635 33703635 + Missense_Mutation SNP G G C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . EDEM2 NM_018217 exon11 c.C1338G p.F446L GTGGATGAAGTTG . 150.0 65.0 149.0 0.0 . 90 EHBP1L1 254102 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 65359477 65359477 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . EHBP1L1 NM_001099409 exon18 c.G4388T p.R1463L AGCACCGAGAGCA . 56.0 25.0 57.0 0.0 . 69 EMILIN2 84034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 2909794 2909794 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . EMILIN2 NM_032048 exon7 c.G2801T p.G934V ACGACGGGGATGT . 104.0 40.0 104.0 0.0 . 93 ERN2 10595 broad.mit.edu;bcgsc.ca 37 16 23717746 23717746 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ERN2 NM_033266 exon7 c.C638T p.T213M GTGACCGTATACT . 59.0 4.0 53.0 0.0 . 322 FAM47B 170062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34962716 34962716 + Missense_Mutation SNP A A T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . FAM47B NM_152631 exon1 c.A1768T p.I590F GGACCAATTGCCT . 217.0 49.0 186.0 0.0 . 196 FASN 2194 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 80045029 80045029 + Silent SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . FASN NM_004104 exon21 c.G3324A p.E1108E CTGCTGCTCCTGC . 58.0 30.0 68.0 0.0 . 90 FCGR2A 2212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161475295 161475295 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . FCGR2A NM_001136219 exon1 c.C38T p.P13L TATGTCCCAGAAA . 90.0 33.0 60.0 0.0 . 91 FCGR3B 2215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161595991 161595991 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . FCGR3B NM_001244753 exon4 c.G629A p.G210E ACAAGCCCCCTGC . 183.0 100.0 133.0 0.0 . 22 GPI 2821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 34890537 34890537 + Splice_Site SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . GPI NM_001184722 exon16 c.1507+1G>T . TGGTCGGTGAGTG . 156.0 59.0 150.0 0.0 . 228 GPX1 2876 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 49395602 49395602 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . GPX1 . . . . ACCTTGCCCCGCA . 96.0 41.0 100.0 1.0 . 68 GRIA2 2891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 158256937 158256937 + Missense_Mutation SNP T T A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . GRIA2 NM_000826 exon10 c.T1381A p.Y461N TTCAAGTACAAGT . 68.0 59.0 140.0 0.0 . 515 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu 37 6 12120242 12120242 + Nonsense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . HIVEP1 NM_002114 exon4 c.C214T p.Q72X CCTCTTCAGGCAA . 102.0 5.0 110.0 0.0 . 139 INHBA 3624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 41729922 41729922 + Nonsense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . INHBA NM_002192 exon3 c.G607T p.E203X ACAGTTCACTCCT . 104.0 30.0 118.0 0.0 . 703 ITGA3 3675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48156884 48156884 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ITGA3 NM_005501 exon21 c.T2669C p.L890P TCACTCTGGCTGC . 68.0 31.0 62.0 0.0 . 229 KCNK18 338567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118969678 118969678 + Silent SNP C C G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . KCNK18 NM_181840 exon3 c.C1023G p.S341S CTTCTCCATTTAT . 94.0 42.0 102.0 0.0 . 91 KCNQ2 3785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62076074 62076074 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . KCNQ2 NM_172106 exon4 c.C628T p.R210C CCATGCGGATCAT . 57.0 25.0 56.0 0.0 . 92 KIAA0368 23392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 114124389 114124389 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . KIAA0368 NM_001080398 exon51 c.C5975T p.A1992V ATAGTAGCTAAAG . 130.0 69.0 148.0 0.0 . 68 KIF16B 55614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 16387061 16387061 + Silent SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . KIF16B NM_001199865 exon16 c.T1653C p.F551F ATGGTTAAAGCGA . 122.0 62.0 98.0 0.0 . 291 KRT81 3887 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 52680104 52680104 + Missense_Mutation SNP C C T rs115355093 byfrequency TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . KRT81 NM_002281 exon9 c.G1453A p.V485M AGCCCACGCCGCA . 77.0 11.0 74.0 0.0 C|0.995;T|0.005 90 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235915327 235915327 + Silent SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . LYST NM_000081 exon27 c.T7605C p.N2535N TTTGCTATTTTGA . 89.0 50.0 86.0 0.0 . 143 MAN2A1 4124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 109178033 109178033 + Missense_Mutation SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . MAN2A1 NM_002372 exon17 c.A2571G p.I857M AGGAATAGAAGGA . 284.0 128.0 302.0 0.0 . 92 MYCBP2 23077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 77656079 77656079 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . MYCBP2 NM_015057 exon64 c.A11086G p.S3696G CGTTGCTCTGATG . 124.0 56.0 82.0 0.0 . 236 MYO16 23026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 109793226 109793226 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . MYO16 NM_001198950 exon32 c.G4666A p.G1556R CCGGAGGGGTCGA . 150.0 44.0 70.0 0.0 . 142 MYO9B 4650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17291744 17291744 + Missense_Mutation SNP A A T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . MYO9B NM_001130065 exon15 c.A2228T p.H743L ATTTGCATAACCA . 93.0 37.0 79.0 0.0 . 67 NAGS 162417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42083959 42083959 + Silent SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . NAGS NM_153006 exon4 c.C978T p.S326S GGTGAGCACAAAA . 61.0 25.0 60.0 0.0 . 90 NPFFR1 64106 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 72015152 72015152 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . NPFFR1 NM_022146 exon4 c.C854T p.P285L CAGAGCGGCAGCC . 18.0 9.0 21.0 0.0 . 22 OLFML2A 169611 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 127563878 127563878 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . OLFML2A NM_182487 exon5 c.G855T p.Q285H GCAGCAGGCTGTG . 132.0 59.0 129.0 2.0 . 68 OLFML2A 169611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 127563879 127563879 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . OLFML2A NM_182487 exon5 c.G856T p.A286S CAGCAGGCTGTGA . 132.0 59.0 130.0 0.0 . 68 OR51F1 256892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4790712 4790712 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . OR51F1 NM_001004752 exon1 c.A436G p.M146V GACCCATTTGAAT . 76.0 34.0 63.0 0.0 . 70 OR8I2 120586 broad.mit.edu;mdanderson.org 37 11 55861688 55861688 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . OR8I2 NM_001003750 exon1 c.G905A p.R302K TTCTGAGAGTCAT . 29.0 13.0 39.0 0.0 . 113 PASK 23178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242075390 242075390 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . PASK NM_015148 exon8 c.A1202G p.Q401R GGGAGCTGTAATG . 35.0 30.0 84.0 0.0 . 536 PIWIL4 143689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 94318670 94318670 + Missense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . PIWIL4 NM_152431 exon6 c.C695A p.P232Q CAGAGCCAATGGA . 77.0 63.0 116.0 0.0 . 91 PRKAG3 53632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219688557 219688557 + Silent SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . PRKAG3 NM_017431 exon13 c.C1398T p.G466G GACCACGCCCAAG . 13.0 8.0 34.0 0.0 . 659 PRLHR 2834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120354363 120354363 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . PRLHR NM_004248 exon2 c.G394A p.G132S ACAGGCCGCCGCC . 36.0 17.0 28.0 0.0 . 90 RABEPK 10244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 127996064 127996064 + Silent SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . RABEPK NM_005833 exon8 c.T924C p.A308A GTGTGCTTCTGAG . 126.0 56.0 122.0 0.0 . 91 RANBP2 5903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 109380985 109380985 + Silent SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . RANBP2 NM_006267 exon20 c.T3990C p.D1330D TCATGATAACAAG . 47.0 43.0 99.0 0.0 . 675 RBMXL3 139804 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114426362 114426362 + Silent SNP G G A rs186136686 by1000genomes TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . . NM_001145346 exon1 c.G2358A p.S786S CCGCTCGCTCGAT . 72.0 39.0 74.0 1.0 G|0.999;A|0.001 . RELN 5649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 103202066 103202066 + Silent SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . RELN NM_173054 exon36 c.T5442C p.P1814P AAGGTCAGGATGT . 81.0 37.0 71.0 0.0 . 574 SCAND1 51282 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 34541998 34541998 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SCAND1 NM_033630 exon2 c.C398T p.A133V AGGGCCGCGGAGG . 23.0 12.0 26.0 0.0 . 90 SCN1A 6323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166897863 166897863 + Missense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SCN1A NM_001165963 exon13 c.G2293T p.V765L CCATCACAACCAG . 37.0 29.0 87.0 0.0 . 147 SEMA3E 9723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 83035265 83035265 + Silent SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SEMA3E NM_012431 exon8 c.A924G p.E308E ACCTAATTCATCA . 84.0 37.0 71.0 0.0 . 93 SEMA6D 80031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48056407 48056407 + Missense_Mutation SNP T T A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SEMA6D NM_153617 exon11 c.T1002A p.D334E CATGGATGACATT . 104.0 84.0 186.0 0.0 . 138 SMAD5 4090 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 135510151 135510151 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SMAD5 . . . . TGCAACTTTCATC . 118.0 50.0 121.0 0.0 . 278 SOS1 6654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 39278406 39278406 + Missense_Mutation SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SOS1 NM_005633 exon6 c.G743A p.R248H ACTATGCGACTAA . 91.0 85.0 99.0 0.0 . 851 SPINK6 404203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 147593575 147593575 + Missense_Mutation SNP T T C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SPINK6 NM_205841 exon3 c.T184C p.C62R GCCTTCTGTAAGG . 70.0 30.0 58.0 0.0 . 91 SRRT 51593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 100478943 100478943 + Nonsense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . SRRT NM_001128853 exon3 c.G160T p.E54X CGGGGTGAATATC . 77.0 29.0 46.0 0.0 . 92 TACR1 6869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 75276831 75276831 + Missense_Mutation SNP G G T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . TACR1 NM_001058 exon5 c.C952A p.H318N AGGCATGCTTGAA . 47.0 25.0 37.0 0.0 . 523 TLR5 7100 hgsc.bcm.edu;broad.mit.edu 37 1 223284253 223284253 + Silent SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . TLR5 NM_003268 exon6 c.G2121T p.V707V ATTCTGCACCCAT . 106.0 5.0 123.0 0.0 . 525 TMEM174 134288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 72469597 72469597 + Missense_Mutation SNP T T A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . TMEM174 NM_153217 exon1 c.T527A p.M176K CCGCCATGTCAAG . 142.0 61.0 167.0 0.0 . 91 TMEM42 131616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 44906567 44906567 + Silent SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . TMEM42 NM_144638 exon3 c.G375A p.Q125Q GTGCCAGGAGGTC . 135.0 64.0 155.0 0.0 . 90 URM1 81605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131152007 131152007 + Silent SNP C C T novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . URM1 NM_030914 exon5 c.C300T p.G100G GCACGGCGGCTGA . 94.0 39.0 101.0 0.0 . 90 USP26 83844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 132161219 132161219 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . USP26 NM_031907 exon1 c.C1030T p.R344W GTAGCCGTGCCAA . 264.0 133.0 268.0 0.0 . 661 YWHAH 7533 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 32352465 32352465 + Missense_Mutation SNP A A C novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . YWHAH NM_003405 exon2 c.A427C p.K143Q GAGAAGAAAAACA . 24.0 19.0 74.0 2.0 . 1082 ZACN 353174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 74075584 74075584 + Missense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZACN NM_180990 exon2 c.C162A p.N54K CCCGAACAATGGG . 164.0 78.0 153.0 0.0 . 90 ZAN 7455 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100349486 100349486 + RNA SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZAN . . . . CACAGTCCCCAAA . 164.0 93.0 136.0 0.0 . 142 ZFPM2 23414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 106813922 106813922 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZFPM2 NM_012082 exon8 c.G1612A p.V538I CCTCCCGTCATTT . 35.0 34.0 45.0 0.0 . 139 ZNF221 7638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 44471018 44471018 + Missense_Mutation SNP G G A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZNF221 NM_013359 exon6 c.G1364A p.C455Y AGGAGTGTGGTAA . 71.0 39.0 64.0 0.0 . 91 ZNF584 201514 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58928202 58928202 + Missense_Mutation SNP A A G novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZNF584 NM_173548 exon4 c.A317G p.E106G AGGATGAGAGAGC . 47.0 24.0 48.0 2.0 . 90 ZNF764 92595 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 30569410 30569410 + Missense_Mutation SNP C C A novel TCGA-DD-A73B-01A-12D-A32G-10 TCGA-DD-A73B-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b4d9df4d-9dd6-46d9-a147-8b26ebd05af3 1669b7ec-5ff8-4578-afe1-3e5d3094b3bf . ZNF764 NM_001172679 exon1 c.G94T p.A32S ACACGGCCACGTC . 18.0 9.0 31.0 0.0 . 91