Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq AARS2 57505 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 44279864 44279864 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AARS2 NM_020745 exon2 c.A380T p.H127L GTATGATGGGAAA . 208.0 11.0 165.0 0.0 . 91 ACO2 50 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41911430 41911430 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ACO2 NM_001098 exon5 c.A575T p.D192V GCACTGACTCCCA . 158.0 16.0 133.0 0.0 . 290 ADAM15 8751 hgsc.bcm.edu;broad.mit.edu 37 1 155030505 155030505 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ADAM15 NM_001261464 exon14 c.A1625T p.Q542L AGTGCCAGTCACT . 69.0 5.0 80.0 0.0 . 651 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 33648938 33648938 + Nonsense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ADAMTS12 NM_030955 exon9 c.C1468T p.Q490X CTTCCTGGCAGAA . 219.0 80.0 179.0 0.0 . 232 AK8 158067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 9 135739158 135739158 + Nonsense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AK8 NM_152572 exon4 c.G227A p.W76X CAGAGCCACATTG . 127.0 17.0 136.0 0.0 . 90 AKR7L 246181 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 19596175 19596175 + RNA SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AKR7L NR_040288 exon5 c.508-2A>T . ATGCCCTGTAAGG . 198.0 25.0 235.0 1.0 . 90 ALDH16A1 126133 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49972222 49972222 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALDH16A1 NM_153329 exon16 c.G2226T p.M742I GGCCATGTGGTAT . 106.0 31.0 126.0 1.0 . 91 ALG9 79796 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 111680436 111680436 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALG9 NM_024740 exon15 c.A1664T p.E555V TTTGGCTCCCGGG . 134.0 11.0 117.0 1.0 . 91 ALK 238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 29416521 29416521 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALK NM_004304 exon29 c.A4432G p.M1478V ATGCCATATTCAC . 231.0 74.0 261.0 0.0 . 3833 ALKBH2 121642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 109526088 109526088 + Missense_Mutation SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALKBH2 NM_001001655 exon4 c.A709C p.S237R GAAGACTGTGGTA . 63.0 23.0 67.0 0.0 . 227 ALPK1 80216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 113353386 113353386 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALPK1 NM_001102406 exon11 c.A2683G p.N895D AGCGGTAACATCC . 145.0 75.0 224.0 0.0 . 337 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 85401062 85401062 + Silent SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ALPK3 NM_020778 exon6 c.G3699T p.L1233L CCTGCTGCTGAGC . 24.0 7.0 32.0 0.0 . 337 AMZ1 155185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2740227 2740227 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AMZ1 NM_133463 exon2 c.T142A p.Y48N GAGGCCTACAACC . 45.0 5.0 92.0 0.0 . 90 ANKRD52 283373 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 56636966 56636966 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ANKRD52 NM_173595 exon28 c.G3191T p.R1064L CCGGGCCGCTCCT . 18.0 5.0 24.0 0.0 . 70 ANXA7 310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 75147463 75147463 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ANXA7 NM_004034 exon8 c.A683T p.K228M GAGGTCTTAAATG . 255.0 31.0 213.0 0.0 . 516 AP4E1 23431 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 51285722 51285722 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AP4E1 NM_007347 exon17 c.A2246T p.D749V AAAAGGATCAATC . 95.0 8.0 76.0 0.0 . 90 ARHGEF2 9181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155931649 155931649 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ARHGEF2 NM_001162383 exon11 c.A1271T p.E424V AGCAGCTCCTTCA . 312.0 35.0 231.0 0.0 . 228 ASPM 259266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197108988 197108988 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ASPM NM_001206846 exon4 c.C1935A p.F645L AGTTCTGAATATT . 44.0 17.0 47.0 0.0 . 615 ATP10B 23120 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 160061560 160061560 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ATP10B NM_025153 exon12 c.A1182T p.Q394H GAACACTTGCCCG . 270.0 26.0 239.0 1.0 . 72 AURKA 6790 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 54961584 54961584 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . AURKA NM_198437 exon3 c.A48T p.T16T TGGAGCTGTAGCC . 126.0 7.0 99.0 0.0 . 1601 B3GNT4 79369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 122691677 122691677 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . B3GNT4 NM_030765 exon3 c.T879A p.A293A CCAGGCTATCATG . 95.0 11.0 142.0 0.0 . 91 BCAS3 54828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 59155891 59155891 + Splice_Site SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . BCAS3 NM_001099432 exon22 c.2372+1G>A . TCTCAGGTAGGAA . 154.0 44.0 138.0 0.0 . 495 BPTF 2186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65920668 65920668 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . BPTF NM_004459 exon17 c.A6092G p.E2031G GAGTGGAGAAAGA . 293.0 105.0 261.0 0.0 . 94 BRPF1 7862 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9776024 9776024 + Missense_Mutation SNP A A C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . BRPF1 NM_001003694 exon2 c.A200C p.Q67P GGCGCCAGTCACG . 169.0 42.0 187.0 1.0 . 92 BTBD7 55727 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 93714872 93714872 + Nonsense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . BTBD7 NM_001002860 exon9 c.C2071T p.R691X GCACTCGAATCTG . 89.0 25.0 93.0 0.0 . 91 BTN2A2 10385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26392974 26392974 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . BTN2A2 NM_006995 exon8 c.G1351T p.D451Y TTCCTGGACTATG . 408.0 134.0 397.0 1.0 . 90 C4orf21 55345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 113461976 113461976 + Splice_Site SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . C4orf21 NM_018392 exon27 c.5910+1G>T . TACCAACCTTGTA . 94.0 48.0 146.0 0.0 . 90 CA6 765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 9027785 9027785 + Nonsense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CA6 NM_001215 exon6 c.C639A p.Y213X CTACTACACCTAC . 902.0 250.0 632.0 1.0 . 516 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48668930 48668930 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CACNA1G NM_001256360 exon11 c.A2588G p.D863G CCATGGACAACGT . 99.0 32.0 128.0 0.0 . 67 CADPS 8618 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 62518735 62518735 + Splice_Site SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CADPS NM_183394 exon14 c.2104-2A>T . CAGCCCTATATAA . 90.0 7.0 71.0 0.0 . 281 CAND2 23066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 12856693 12856693 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CAND2 NM_001162499 exon8 c.G1060T p.A354S CGCCGGGCAGCTG . 194.0 76.0 260.0 0.0 . 72 CASC5 57082 hgsc.bcm.edu;broad.mit.edu 37 15 40917526 40917526 + Silent SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CASC5 NM_170589 exon11 c.G5142T p.P1714P TCAGCCGGTCTCT . 82.0 5.0 66.0 0.0 . 660 CCDC108 255101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219897276 219897276 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CCDC108 NM_194302 exon6 c.C561T p.F187F GAAGAAGAACTTG . 200.0 55.0 252.0 0.0 . 94 CCKBR 887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6291552 6291552 + Missense_Mutation SNP G G A rs200729292 TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CCKBR NM_176875 exon3 c.G638A p.R213Q GTGCGCGGGTCCG . 97.0 48.0 113.0 0.0 . 574 CCR7 1236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38711882 38711882 + Silent SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CCR7 NM_001838 exon3 c.T249C p.Y83Y ATAGATATAGGTC . 173.0 23.0 150.0 0.0 . 659 CD164 8763 broad.mit.edu;bcgsc.ca 37 6 109690222 109690222 + Splice_Site SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CD164 NM_006016 exon7 c.428-2A>T . TGTACCTGTTAGA . 167.0 14.0 226.0 1.0 . 90 CD38 952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15841652 15841652 + Silent SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CD38 NM_001775 exon6 c.T663G p.T221T TAGCACTTTTGGG . 106.0 13.0 96.0 0.0 . 92 CD6 923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 60777231 60777231 + Silent SNP C C G rs150066453 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CD6 NM_006725 exon5 c.C969G p.S323S CTTGTCCGGCAGG . 127.0 39.0 120.0 0.0 C|1.000;T|0.000 227 CEP170 9859 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 243354349 243354349 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CEP170 NM_001042405 exon8 c.A1079T p.D360V GGAACATCACTTT . 257.0 16.0 218.0 0.0 . 93 CEP97 79598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 101451370 101451370 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CEP97 NM_024548 exon6 c.G600A p.L200L ACAGTTGTCGATT . 232.0 34.0 219.0 0.0 . 70 CHDH 55349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 53857409 53857409 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CHDH NM_018397 exon3 c.C627T p.A209A GTAGCCGGCCTGC . 99.0 11.0 143.0 0.0 . 91 CILP2 148113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19656087 19656087 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CILP2 NM_153221 exon8 c.G2733A p.V911V CAACGTGGTCCCC . 115.0 26.0 142.0 0.0 . 91 CLCN7 1186 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 1510832 1510832 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CLCN7 NM_001287 exon5 c.A469T p.R157W TGACCCTGTACTT . 156.0 13.0 169.0 0.0 . 92 COPS3 8533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 17179373 17179373 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . COPS3 NM_003653 exon2 c.A161T p.H54L AAGGAGTGTTCTT . 126.0 14.0 164.0 0.0 . 226 CPNE4 131034 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 131418758 131418758 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CPNE4 NM_130808 exon4 c.A427T p.I143F CCGTGATGGAAGA . 133.0 9.0 97.0 0.0 . 92 CPQ 10404 broad.mit.edu;bcgsc.ca 37 8 97892096 97892106 + Frame_Shift_Del DEL GATGCAGAAAT GATGCAGAAAT - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 GATGCAGAAAT GATGCAGAAAT . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_016134 exon4 c.712_722del p.238_241del GTGGAAGATGCAG . 332.0 15.0 250.0 0.0 . . CR1 1378 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 207679331 207679331 + Nonsense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CR1 NM_000573 exon2 c.T204A p.Y68X GACATATCTGAAC . 445.0 33.0 332.0 0.0 . 93 CRAT 1384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131860591 131860591 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CRAT NM_000755 exon10 c.C1265T p.P422L GACTTGGGGAAGT . 179.0 28.0 202.0 0.0 . 90 CUBN 8029 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 17087018 17087018 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . CUBN NM_001081 exon25 c.A3660T p.L1220F GTAATCTAAAGTG . 188.0 11.0 163.0 1.0 . 166 DDX46 9879 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 134117757 134117757 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DDX46 NM_014829 exon8 c.A1026T p.L342L AGAACTAGCAAAA . 202.0 13.0 177.0 0.0 . 227 DENND5A 23258 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 9182408 9182408 + Missense_Mutation SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DENND5A NM_001243254 exon12 c.A2288C p.K763T ATCCTCTTGGTCT . 286.0 17.0 224.0 0.0 . 91 DIXDC1 85458 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 111864260 111864260 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DIXDC1 . . . . AGCACCAGGCCAA . 211.0 15.0 190.0 0.0 . 91 DNAH1 25981 broad.mit.edu;bcgsc.ca 37 3 52419373 52419373 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DNAH1 NM_015512 exon54 c.T8535A p.D2845E TGAGGATGTAGCC . 200.0 18.0 187.0 1.0 . 67 DNAJC5 80331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62562355 62562355 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DNAJC5 NM_025219 exon4 c.A473T p.Q158L AGGCACAGCTGCA . 143.0 10.0 155.0 0.0 . 227 DNER 92737 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 230377533 230377533 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DNER NM_139072 exon6 c.A1113T p.Q371H CCCATCTTGCTTT . 265.0 15.0 282.0 1.0 . 524 DNM2 1785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10906053 10906053 + Missense_Mutation SNP G G C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DNM2 NM_001005361 exon9 c.G1134C p.E378D GATGGAGTTTGAC . 131.0 42.0 110.0 0.0 . 471 DNMT1 1786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10251564 10251564 + Missense_Mutation SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DNMT1 NM_001130823 exon32 c.A3416C p.Q1139P CAGGCTTGGGACT . 65.0 27.0 60.0 0.0 . 660 DPCR1 135656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30917142 30917142 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DPCR1 NM_080870 exon2 c.C901T p.P301S CCATCCCCAGCAG . 207.0 71.0 170.0 0.0 . 90 DPYSL3 1809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 146792244 146792244 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . DPYSL3 NM_001197294 exon6 c.A890T p.E297V AAGATCTCATAGA . 112.0 10.0 114.0 0.0 . 91 EIF3D 8664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 36919311 36919311 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . EIF3D NM_003753 exon6 c.A410T p.Q137L TTTTTCTGCAGTC . 115.0 9.0 102.0 0.0 . 69 ELFN1 392617 bcgsc.ca;mdanderson.org 37 7 1784840 1784840 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_001128636 exon2 c.G608A p.R203H TCCTGCGCTGGCT . 18.0 3.0 66.0 0.0 . . EPHB2 2048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 23222044 23222044 + Silent SNP T T A rs141173528 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . EPHB2 NM_017449 exon8 c.T1671A p.A557A CATTGCTGTGGTT . 113.0 18.0 181.0 0.0 T|1.000;C|0.000 1381 F5 2153 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 169521814 169521814 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . F5 NM_000130 exon8 c.A1277T p.Q426L CTGACCTGGGCTC . 185.0 14.0 124.0 0.0 . 157 F8 2157 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 154158501 154158501 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . F8 NM_000132 exon14 c.A3564T p.P1188P GCTGCTTGGAAAA . 134.0 7.0 68.0 0.0 . 182 FAM194A 131831 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 150398678 150398678 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FAM194A NM_152394 exon8 c.A922T p.I308F CATAGATATAGTC . 91.0 5.0 94.0 0.0 . 93 FAU 2197 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 64888161 64888161 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FAU NM_001997 exon5 c.A394T p.N132Y AAGAGTTGGCATT . 137.0 7.0 118.0 0.0 . 90 FBXO42 54455 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 16578144 16578145 + Frame_Shift_Del DEL TG TG - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FBXO42 NM_018994 exon10 c.1174_1175del p.392_392del GGAGACTGAGAGC . 243.0 29.0 204.0 0.0 . 228 FIS1 51024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 100884160 100884160 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FIS1 NM_016068 exon3 c.A206T p.E69V CGCTGTTCCTCCT . 462.0 31.0 350.0 0.0 . 44 FN1 2335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 216261912 216261912 + Silent SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FN1 NM_212476 exon23 c.A3552G p.A1184A AGGGTTTGCCTCC . 72.0 15.0 82.0 0.0 . 584 FOXS1 2307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 30432787 30432787 + Missense_Mutation SNP G G A rs149428291 byfrequency TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FOXS1 NM_004118 exon1 c.C559T p.R187W GTGGCCGAGGCCT . 48.0 13.0 73.0 0.0 G|0.999;A|0.001 69 FRRS1 391059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100174554 100174554 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . FRRS1 NM_001013660 exon17 c.A1781T p.Q594L ATCACTTGGCCTG . 120.0 48.0 77.0 0.0 . 91 GAD2 2572 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 26581901 26581901 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GAD2 NM_000818 exon15 c.G1565A p.R522K AAGAGAGAATGAG . 107.0 57.0 109.0 0.0 . 515 GLE1 2733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131287658 131287658 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GLE1 NM_001499 exon7 c.A1085G p.E362G ACAAAGAGCCCCC . 82.0 28.0 102.0 0.0 . 22 GORAB 92344 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 170521319 170521319 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GORAB NM_152281 exon5 c.G901T p.V301L CTAGATGTAGAAG . 197.0 19.0 175.0 1.0 . 90 GPR153 387509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 6314095 6314095 + Missense_Mutation SNP A A C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GPR153 NM_207370 exon3 c.T469G p.Y157D GGGTGTAGAAGCG . 177.0 37.0 207.0 0.0 . 514 GPR176 11245 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40094295 40094295 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GPR176 NM_007223 exon3 c.T586A p.W196R TGCTCCAGACTTC . 244.0 26.0 207.0 1.0 . 519 GRIK2 2898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 102250278 102250278 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . GRIK2 NM_021956 exon8 c.G1168A p.D390N GATTTGGATGTGA . 112.0 29.0 104.0 0.0 . 157 HMOX1 3162 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 35789564 35789564 + Silent SNP A A T rs140740892 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . HMOX1 NM_002133 exon5 c.A840T p.T280T GGCGACAGTTGCT . 141.0 8.0 179.0 0.0 A|0.997;G|0.003 91 HNRNPH2 3188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100667970 100667970 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . HNRNPH2 NM_001032393 exon2 c.G994T p.D332Y GAGGCAGATGTTG . 265.0 197.0 140.0 0.0 . 130 HNRPLL 92906 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 38804603 38804603 + Missense_Mutation SNP C C G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . HNRPLL NM_138394 exon7 c.G874C p.G292R ACTTACCATAGCC . 298.0 86.0 273.0 0.0 . 91 HOXA6 3203 broad.mit.edu;ucsc.edu 37 7 27187129 27187129 + Nonsense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . HOXA6 NM_024014 exon1 c.T240A p.Y80X ATCAGAATAGAAA . 167.0 53.0 159.0 1.0 . 91 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 53672381 53672381 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . HUWE1 NM_031407 exon7 c.A386T p.Q129L ACCACTTGCATAT . 127.0 7.0 53.0 0.0 . 280 IL10RA 3587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 117869879 117869879 + Silent SNP G G T rs199604463 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . IL10RA NM_001558 exon7 c.G1260T p.S420S TGGCTCGGCCTTG . 126.0 42.0 130.0 0.0 G|0.999;A|0.000 91 IL6ST 3572 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 55259982 55259990 + In_Frame_Del DEL ACAGGATCA ACAGGATCA - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 ACAGGATCA ACAGGATCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . IL6ST NM_175767 exon6 c.642_650del p.214_217del TTATATACAGGAT . 101.0 18.0 121.0 0.0 . 290 ITFG2 55846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2927434 2927434 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ITFG2 NM_018463 exon4 c.A397T p.S133C CTGATCAGCGACA . 144.0 54.0 142.0 0.0 . 90 ITGA6 3655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 173344405 173344405 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ITGA6 NM_000210 exon10 c.A1425T p.T475T CATCACAGTAACT . 85.0 31.0 111.0 0.0 . 227 ITGB5 3693 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 124592297 124592297 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ITGB5 NM_002213 exon2 c.A152T p.K51I ACCTCTTTGGAGC . 269.0 21.0 242.0 0.0 . 227 ITIH5 80760 broad.mit.edu;ucsc.edu;mdanderson.org 37 10 7627889 7627889 + Nonsense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ITIH5 NM_001001851 exon8 c.C1083A p.Y361X GTGAATGTACACT . 410.0 79.0 305.0 1.0 . 92 KALRN 8997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 124048793 124048793 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KALRN NM_003947 exon8 c.A1364T p.H455L CAATCCACCACCA . 262.0 79.0 245.0 0.0 . 738 KCNK6 9424 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 38817261 38817261 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KCNK6 NM_004823 exon2 c.T351A p.D117E GACTGATGCGGGC . 58.0 4.0 56.0 0.0 . 91 KIAA0226 9711 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 197427705 197427705 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KIAA0226 NM_014687 exon7 c.A1040T p.E347V CTGCTCTCGGCAT . 178.0 18.0 189.0 0.0 . 22 KIAA1377 57562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 101834387 101834387 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KIAA1377 NM_020802 exon6 c.C2621T p.S874L TACCATCACTGCC . 183.0 55.0 127.0 0.0 . 136 KIF19 124602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72349367 72349367 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KIF19 NM_153209 exon16 c.G2147T p.G716V GTACTGGGGCCTG . 192.0 88.0 201.0 0.0 . 90 KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 10408722 10408722 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KIF1B NM_015074 exon35 c.A3742T p.I1248F CGAAGGATCACAG . 368.0 115.0 253.0 0.0 . 93 KITLG 4254 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 88900157 88900157 + Splice_Site SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KITLG NM_000899 exon9 c.715-2A>T . CTCTTCTGGAAAA . 96.0 10.0 80.0 0.0 . 227 KNSTRN 90417 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 40675114 40675114 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_033286 exon1 c.A78T p.P26P CCACCCACTTCCG . 122.0 9.0 108.0 0.0 . . KRT33B 3884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39521676 39521676 + Missense_Mutation SNP G G A rs141441300 byfrequency TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KRT33B NM_002279 exon4 c.C718T p.R240C CCCTGCGGTTGGT . 279.0 88.0 292.0 0.0 G|1.000;A|0.000 90 KRT40 125115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39135187 39135187 + Silent SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_182497 exon8 c.G1065A p.E355E CTGGTTCTCCAGG . 152.0 49.0 176.0 0.0 . . KRT86 3892 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 52699941 52699941 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . KRT86 NM_002284 exon7 c.T1124A p.L375Q GTGCCCTGCAGAA . 116.0 6.0 204.0 0.0 . 91 LAMA1 284217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 7013887 7013887 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LAMA1 NM_005559 exon23 c.C3290A p.T1097K CCCGACGTCCCCC . 196.0 88.0 259.0 0.0 . 149 LENG8 114823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54962528 54962528 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LENG8 NM_052925 exon2 c.G7A p.A3T ATGGCGGCCAACG . 188.0 65.0 179.0 0.0 . 91 LEPR 3953 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 66081748 66081748 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LEPR NM_001003680 exon15 c.A2053T p.T685S CATCATACTTCCT . 257.0 13.0 161.0 0.0 . 91 LGALS8 3964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236708178 236708178 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LGALS8 NM_006499 exon11 c.T893C p.I298T GAAATATTACCTC . 136.0 50.0 105.0 0.0 . 91 LHX6 26468 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 124979380 124979380 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LHX6 NM_014368 exon5 c.A649T p.M217L CAATCATGGTGTC . 126.0 8.0 200.0 0.0 . 90 LIFR 3977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38490325 38490325 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LIFR NM_002310 exon15 c.T2134A p.L712I AGCGTAATAATTG . 148.0 20.0 129.0 0.0 . 1173 LINGO1 84894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 77907675 77907675 + Missense_Mutation SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LINGO1 NM_032808 exon2 c.A574C p.S192R CCAGGCTGTTGAG . 138.0 57.0 133.0 0.0 . 24 LMAN1L 79748 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 75115899 75115899 + Splice_Site SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LMAN1L NM_021819 exon12 c.1200-1G>T . CGGTTAGGGATGC . 51.0 7.0 81.0 0.0 . 90 LMBR1 64327 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 156556491 156556491 + Splice_Site SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LMBR1 NM_022458 exon7 c.424-2A>T . ATTCCCTGAAAAA . 159.0 7.0 90.0 0.0 . 90 LRFN1 57622 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 39805513 39805513 + Missense_Mutation SNP G G A rs201576239 TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LRFN1 NM_020862 exon1 c.C464T p.A155V AAGGCCGCCGACT . 72.0 5.0 87.0 0.0 . 70 LRGUK 136332 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 7 133881819 133881819 + Nonsense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LRGUK NM_144648 exon13 c.A1507T p.R503X ATCGCAAGAGATG . 186.0 15.0 112.0 0.0 . 227 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 85449747 85449747 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LRRIQ1 NM_001079910 exon8 c.A1176T p.Q392H AAGCCAACAGCTA . 45.0 5.0 27.0 0.0 . 95 LRRN3 54674 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 110763113 110763113 + Silent SNP T T A rs151294396 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . LRRN3 NM_018334 exon2 c.T285A p.T95T CCTTACTGGCCTG . 64.0 4.0 33.0 0.0 T|1.000;C|0.000 154 MAEA 10296 hgsc.bcm.edu;broad.mit.edu 37 4 1332275 1332275 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MAEA NM_001017405 exon8 c.A965T p.N322I CCCTGAACAAGCT . 102.0 7.0 112.0 0.0 . 91 MAN2A1 4124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 109026191 109026191 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MAN2A1 NM_002372 exon1 c.A73G p.M25V TACCTGATGCTGG . 253.0 69.0 158.0 0.0 . 92 MAP1A 4130 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 43819173 43819173 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MAP1A NM_002373 exon4 c.T5502A p.T1834T ACCCACTACTCCC . 139.0 8.0 145.0 0.0 . 141 MAP4K4 9448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102483701 102483701 + Missense_Mutation SNP C C G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MAP4K4 NM_001242559 exon19 c.C2150G p.S717C CTCCATCTCAGCG . 135.0 35.0 153.0 0.0 . 547 MATK 4145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 3779601 3779601 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MATK NM_002378 exon10 c.A860T p.E287V AGGTTCTCGTGTT . 34.0 7.0 55.0 0.0 . 521 MCF2L 23263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 113730402 113730402 + Silent SNP G G A rs141497667 byfrequency TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MCF2L NM_001112732 exon12 c.G1431A p.A477A CGGTGCGGAAAAT . 209.0 59.0 200.0 0.0 G|0.999;A|0.001 228 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90380710 90380710 + Silent SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MDN1 NM_014611 exon83 c.T13884C p.S4628S TGCTAAAGACATG . 175.0 50.0 188.0 0.0 . 100 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 90381952 90381952 + Silent SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MDN1 NM_014611 exon82 c.G13761T p.S4587S ACCGTACGATTTC . 87.0 21.0 77.0 0.0 . 100 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 42099396 42099396 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MEI1 NM_152513 exon2 c.T236A p.L79Q CCTCCCTGGTCAC . 106.0 7.0 123.0 0.0 . 70 METTL15 196074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 28135039 28135039 + Missense_Mutation SNP A A C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . METTL15 NM_152636 exon3 c.A158C p.Q53P AAACTCAAGCCCA . 152.0 53.0 124.0 0.0 . 91 MGLL 11343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 127441397 127441397 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MGLL NM_007283 exon4 c.A275G p.Q92R TCGCTCTGTCCGT . 329.0 120.0 245.0 0.0 . 90 MICAL1 64780 broad.mit.edu;bcgsc.ca 37 6 109774931 109774931 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MICAL1 NM_001159291 exon3 c.C376T p.H126Y AGAGGTGGAGCAC . 77.0 6.0 115.0 1.0 . 154 MIR200A 406983 broad.mit.edu;mdanderson.org 37 1 1103273 1103273 + RNA SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . . GGACAGTGCTGGA . 299.0 24.0 252.0 1.0 . . MIR708 100126333 ucsc.edu;mdanderson.org 37 11 79113136 79113136 + RNA SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . . ATTGTAAGCTCCT . 160.0 59.0 135.0 0.0 . . MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151878935 151878935 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MLL3 NM_170606 exon36 c.A6010T p.S2004C GATCACTGGTTCC . 248.0 66.0 120.0 0.0 . 1398 MMP12 4321 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 102737122 102737122 + RNA SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MMP12 . . . . CCATAAGGAAGAA . 189.0 41.0 171.0 0.0 . 226 MMP17 4326 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 132334436 132334436 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MMP17 NM_016155 exon9 c.G1294A p.D432N GGCATCGACGCTG . 188.0 26.0 311.0 1.0 . 226 MROH7 374977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 55130862 55130862 + Silent SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_001039464 exon4 c.A1254G p.S418S GACCTCATGCCTG . 361.0 145.0 256.0 1.0 . . MRPS25 64432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 15093970 15093970 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MRPS25 NM_022497 exon4 c.T500A p.L167Q GCTTTCAGAGCGG . 191.0 13.0 156.0 0.0 . 90 MS4A2 2206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 59857913 59857913 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MS4A2 NM_000139 exon3 c.A291T p.K97N ATTTAAAGCAGGT . 50.0 9.0 43.0 0.0 . 91 MTFR1L 56181 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 26158452 26158452 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_001099625 exon7 c.A814G p.I272V GTGCTTATCTCTG . 128.0 9.0 145.0 0.0 . . MTMR11 10903 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 149904191 149904191 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MTMR11 NM_001145862 exon11 c.A1017T p.S339S CAGGGCTGAAAGC . 162.0 13.0 99.0 0.0 . 90 MYH7B 57644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33582028 33582028 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MYH7B NM_020884 exon27 c.A2650G p.K884E TTTTTCAAGATGA . 320.0 116.0 285.0 0.0 . 136 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10317595 10317595 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MYH8 NM_002472 exon11 c.A922T p.T308S GGTTGGTGGTGAT . 257.0 26.0 332.0 0.0 . 101 MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 26462749 26462749 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MYO3A NM_017433 exon30 c.T3556A p.Y1186N AGAGTGTATCAGA . 122.0 11.0 109.0 0.0 . 1007 MYO7B 4648 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 128334177 128334177 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MYO7B NM_001080527 exon8 c.A743T p.E248V CTCCCGAGGAGCG . 53.0 12.0 52.0 0.0 . 47 MYOF 26509 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 10 95116494 95116494 + Nonsense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . MYOF NM_013451 exon30 c.A3232T p.R1078X TTTTTCTCCTCCA . 213.0 14.0 218.0 0.0 . 93 NACA 4666 hgsc.bcm.edu;bcgsc.ca 37 12 57114439 57114439 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NACA NM_001113203 exon3 c.C875A p.T292N CCCGCAGTCTTTT . 37.0 4.0 30.0 0.0 . 254 NADK 65220 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1687958 1687958 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NADK NM_001198994 exon7 c.C918T p.F306F GGTACAGAATTTC . 166.0 66.0 138.0 1.0 . 44 NCKAP1 10787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 183799524 183799524 + Missense_Mutation SNP T T C rs144468405 byfrequency TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NCKAP1 NM_205842 exon27 c.A2833G p.I945V CTTCAATTGAACT . 113.0 35.0 122.0 0.0 T|0.999;C|0.001 92 NCKIPSD 51517 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 48716129 48716129 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NCKIPSD NM_016453 exon12 c.A1833T p.P611P AGAGTGTGGTGGC . 283.0 19.0 212.0 1.0 . 1082 NCL 4691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 232326345 232326345 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NCL NM_005381 exon3 c.A519T p.A173A CATCGCTGCTGGT . 213.0 18.0 277.0 0.0 . 230 NCSTN 23385 broad.mit.edu;bcgsc.ca 37 1 160325525 160325525 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NCSTN NM_015331 exon12 c.A1433T p.N478I ACCTGAACTTTGT . 293.0 13.0 215.0 1.0 . 658 NEFH 4744 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 29885288 29885292 + Frame_Shift_Del DEL AGCAA AGCAA - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 AGCAA AGCAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NEFH NM_021076 exon4 c.1659_1663del p.553_555del GTCTCCAGCAAAG . 222.0 66.0 326.0 0.0 . 90 NELL2 4753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 44913954 44913954 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NELL2 NM_001145107 exon20 c.T2384A p.I795N GGGAGAATGCTGA . 171.0 48.0 125.0 0.0 . 517 NIP7 51388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 69375171 69375171 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NIP7 NM_016101 exon4 c.A371G p.N124S CTGAAAATACTTC . 136.0 73.0 208.0 0.0 . 153 NISCH 11188 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 52489713 52489713 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NISCH NM_001276293 exon1 c.C56T p.A19V AGGAAGCGCGCGT . 12.0 7.0 34.0 0.0 . 93 NKTR 4820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42674105 42674105 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NKTR NM_005385 exon9 c.A563G p.K188R AGAAAAAAAGGAA . 86.0 25.0 70.0 0.0 . 93 NLGN4X 57502 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 6069270 6069270 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NLGN4X NM_181332 exon2 c.T238A p.S80T GGGGTGAGGCATA . 368.0 26.0 156.0 0.0 . 195 NOL6 65083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 33466415 33466415 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NOL6 NM_022917 exon17 c.A2100T p.P700P AGTTGGTGGGAAC . 169.0 72.0 186.0 0.0 . 92 NPC1L1 29881 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 44578770 44578770 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NPC1L1 NM_001101648 exon2 c.A1226T p.Q409L ATCACCTGGTTGG . 226.0 15.0 193.0 0.0 . 94 NR2C1 7181 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 95452114 95452114 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NR2C1 NM_001032287 exon5 c.A516T p.R172S AATACATCTCTGT . 51.0 5.0 41.0 0.0 . 187 NTS 4922 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 86276027 86276027 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NTS NM_006183 exon4 c.T387A p.T129T TGATACTGGAAAT . 127.0 9.0 107.0 0.0 . 90 NXPH1 30010 ucsc.edu;bcgsc.ca;mdanderson.org 37 7 8790840 8790840 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . NXPH1 NM_152745 exon3 c.A257T p.D86V AGCAAGACCTCTG . 165.0 56.0 160.0 2.0 . 69 OASL 8638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 121458369 121458369 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . OASL NM_003733 exon6 c.A1540T p.S514C ACTAACTGGCTGG . 58.0 8.0 72.0 0.0 . 69 OASL 8638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 121458371 121458371 + Missense_Mutation SNP G G C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . OASL NM_003733 exon6 c.C1538G p.A513G TAACTGGCTGGAA . 58.0 8.0 74.0 0.0 . 69 OIT3 170392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 74660156 74660156 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . OIT3 NM_152635 exon3 c.A458T p.E153V GCGACGAGGACTG . 120.0 35.0 113.0 0.0 . 70 OR5H14 403273 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 97868315 97868315 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . OR5H14 NM_001005514 exon1 c.T86A p.L29Q TGTTCCTGGCATT . 291.0 18.0 256.0 0.0 . 91 OR6Y1 391112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158517532 158517532 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . OR6Y1 NM_001005189 exon1 c.A364T p.I122F CCATGATAGCAAG . 414.0 39.0 255.0 0.0 . 69 PATL1 219988 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 59420493 59420493 + Splice_Site SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PATL1 NM_152716 exon11 c.1122-2A>T . GCTGACTGAAAAA . 117.0 12.0 92.0 0.0 . 1 PCDHGA5 56110 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140744766 140744766 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PCDHGA5 NM_032054 exon1 c.A869T p.E290V TTTCGGAGACTTT . 68.0 9.0 74.0 0.0 . 35 PDSS1 23590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 27024491 27024491 + Silent SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PDSS1 NM_014317 exon10 c.C1009T p.L337L CCTGTCCTGTTTG . 331.0 85.0 199.0 0.0 . 90 PFKP 5214 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 3161001 3161001 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PFKP NM_002627 exon15 c.G1470A p.E490E GGAAGAGATCGCC . 285.0 61.0 194.0 2.0 . 253 PGP 283871 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 2263817 2263817 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PGP NM_001042371 exon2 c.A878T p.Q293L CTTTCCTGATTAT . 273.0 15.0 201.0 0.0 . 23 PHF2 5253 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 96411461 96411461 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PHF2 NM_005392 exon5 c.T569A p.L190H GGGTCCTCAACGT . 194.0 15.0 236.0 1.0 . 91 PIK3R3 8503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 46531740 46531740 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PIK3R3 NM_001114172 exon6 c.A607G p.T203A TTCTAGTATATTC . 116.0 14.0 75.0 0.0 . 1309 PKD2L2 27039 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 137226191 137226191 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PKD2L2 NM_001258448 exon2 c.A53G p.H18R AGTTGCATTACAG . 195.0 61.0 194.0 0.0 . 90 PLCB3 5331 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 64023034 64023034 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PLCB3 NM_000932 exon7 c.A543T p.A181A CTCAGCAGACAAG . 136.0 7.0 134.0 0.0 . 228 PLEKHG3 26030 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65208056 65208056 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PLEKHG3 NM_015549 exon14 c.G1653T p.E551D TGCGGAGCGATTT . 85.0 48.0 118.0 1.0 . 91 PNMA5 114824 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 152159795 152159795 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PNMA5 NM_001103150 exon2 c.T348A p.S116R TGTCATACTTCGG . 258.0 17.0 107.0 1.0 . 131 PPARGC1A 10891 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 23797512 23797512 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PPARGC1A NM_013261 exon13 c.A2330T p.K777M TTGCTCTTGGTGG . 99.0 5.0 69.0 0.0 . 230 PPP2R5B 5526 broad.mit.edu;mdanderson.org 37 11 64693301 64693301 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PPP2R5B NM_006244 exon2 c.C95T p.S32F GCTTCTCCCGCCG . 21.0 7.0 31.0 0.0 . 660 PRH1 5554 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 11036772 11036772 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_006250 exon1 c.A45T p.S15S CTGAGCTGAGCTG . 218.0 15.0 214.0 0.0 . . PRKAR2B 5577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 106781395 106781395 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . PRKAR2B NM_002736 exon5 c.A584T p.D195V TAATTGATAGGTA . 199.0 10.0 146.0 0.0 . 1083 RALGAPA1 253959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 36154285 36154285 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RALGAPA1 NM_194301 exon19 c.A2626G p.N876D GCTTGTTTAGAAT . 80.0 37.0 104.0 0.0 . 138 RASGRP1 10125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 38818572 38818572 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RASGRP1 NM_001128602 exon3 c.T254A p.L85Q TGCAACAGTTGGT . 99.0 25.0 85.0 0.0 . 697 RD3 343035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 211652560 211652560 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RD3 NM_183059 exon3 c.C406A p.H136N GCTTGTGGGCCTC . 44.0 11.0 61.0 0.0 . 91 RGL2 5863 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 33263466 33263466 + Missense_Mutation SNP T T A rs201427428 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RGL2 NM_004761 exon7 c.A839T p.H280L TGAGAATGTCCTG . 190.0 13.0 163.0 0.0 T|0.999;C|0.001 662 RIMS1 22999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 72967855 72967855 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RIMS1 NM_014989 exon17 c.G2798T p.S933I GAGAAAGTAAATC . 78.0 23.0 78.0 0.0 . 144 RIMS1 22999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 72967911 72967911 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RIMS1 NM_014989 exon17 c.C2854A p.R952S CGCTCACGTTCAG . 121.0 30.0 122.0 0.0 . 144 RNF43 54894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56435407 56435407 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RNF43 NM_017763 exon9 c.A1730T p.Q577L CTGGACTGGGGGA . 121.0 14.0 125.0 0.0 . 92 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 55541215 55541215 + Nonsense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RP1 NM_006269 exon4 c.G4773A p.W1591X TGATTGGTCAGAC . 63.0 34.0 55.0 0.0 . 102 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237868576 237868576 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . RYR2 NM_001035 exon67 c.G9513A p.L3171L ATTTTTGGAAACT . 155.0 47.0 133.0 0.0 . 158 SAA1 6288 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 18291314 18291315 + Frame_Shift_Ins INS - - A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SAA1 NM_199161 exon4 c.281_282insA p.S94fs AGGACTCGCTGGC . 290.0 96.0 257.0 0.0 . 650 SAGE1 55511 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 134983800 134983800 + Missense_Mutation SNP C C G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SAGE1 NM_018666 exon3 c.C170G p.S57C GACACTCTTCATC . 1139.0 108.0 528.0 1.0 . 133 SCN11A 11280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38945427 38945427 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SCN11A NM_014139 exon12 c.A1771T p.T591S AGACAGTGTTGAT . 361.0 119.0 372.0 1.0 . 99 SCN1A 6323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166897947 166897947 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SCN1A NM_001165963 exon13 c.T2209A p.C737S ACCAACAGGGTGG . 64.0 9.0 43.0 0.0 . 147 SCN2A 6326 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166245904 166245904 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SCN2A NM_001040143 exon26 c.A5588T p.K1863M TTACAAAGCGTGT . 370.0 90.0 401.0 1.0 . 142 SCN9A 6335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 167163108 167163108 + Missense_Mutation SNP A A C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SCN9A NM_002977 exon4 c.T379G p.L127V TGAATAAGGTAGC . 76.0 31.0 105.0 0.0 . 181 SDR9C7 121214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 57324233 57324233 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SDR9C7 NM_148897 exon2 c.C337T p.L113L TGGGCAGGCCCAC . 196.0 11.0 141.0 0.0 . 90 SEMA6D 80031 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 48058775 48058775 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SEMA6D NM_020858 exon16 c.C1648A p.L550M TGAAGGCTGTTAA . 198.0 84.0 175.0 1.0 . 138 SFXN4 119559 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 10 120914639 120914639 + Nonsense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SFXN4 NM_213649 exon11 c.A667T p.K223X TCCCCTTAATGGA . 204.0 15.0 251.0 0.0 . 91 SHANK3 85358 broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 51121840 51121840 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SHANK3 NM_033517 exon8 c.T958A p.F320I ACAGCCTTCCAGG . 185.0 12.0 203.0 1.0 . 69 SLC22A12 116085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64366298 64366298 + Silent SNP C C A rs150255373 byfrequency;alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC22A12 NM_144585 exon6 c.C973A p.R325R GCCATGCGGGAGG . 34.0 19.0 46.0 0.0 C|1.000;T|0.000 91 SLC25A10 1468 hgsc.bcm.edu;bcgsc.ca 37 17 79682550 79682550 + Missense_Mutation SNP C C T rs199824906 TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC25A10 NM_001270888 exon3 c.C256T p.R86W ACTGTGCGGGACC . 88.0 4.0 141.0 0.0 C|0.999;T|0.000 90 SLC25A39 51629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42398495 42398495 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC25A39 NM_001143780 exon8 c.G622A p.A208T CCTGAGCCACTGC . 86.0 23.0 119.0 0.0 . 91 SLC26A7 115111 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 92352644 92352644 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC26A7 NM_134266 exon8 c.T891A p.P297P CTCACCTAGAGCT . 217.0 13.0 152.0 0.0 . 92 SLC35B2 347734 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 44223243 44223243 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC35B2 NM_178148 exon4 c.G499T p.A167S GGCCAGCCACAAT . 300.0 89.0 266.0 1.0 . 91 SLC4A9 83697 bcgsc.ca;mdanderson.org 37 5 139744102 139744102 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC4A9 NM_001258428 exon11 c.T1615A p.F539I CTCATCTTCATCT . 285.0 19.0 239.0 2.0 . 67 SLC6A15 55117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 85279337 85279337 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC6A15 NM_018057 exon4 c.T451C p.C151R AATAGCACACCTG . 135.0 45.0 116.0 0.0 . 93 SLC6A17 388662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110709579 110709579 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SLC6A17 NM_001010898 exon2 c.C28A p.R10S ACCCAGCGTGAGC . 366.0 163.0 296.0 0.0 . 92 SMG5 23381 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 156230352 156230352 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SMG5 NM_015327 exon15 c.A2173T p.S725C GAAGGCTAGAGGG . 289.0 18.0 236.0 0.0 . 231 SPDL1 54908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169023605 169023605 + Missense_Mutation SNP C C T rs145815866 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_017785 exon8 c.C932T p.T311I CTCAAACTGAATT . 226.0 70.0 207.0 0.0 C|1.000;G|0.000 . SPDYC 387778 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 64939933 64939933 + Silent SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SPDYC NM_001008778 exon5 c.C373T p.L125L GAGGACCTGGAGG . 263.0 17.0 206.0 0.0 . 90 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 220333737 220333737 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SPEG NM_005876 exon12 c.T3458A p.V1153E TGTATGTAGAAGA . 80.0 9.0 106.0 0.0 . 383 SPOCK1 6695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 136324224 136324224 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SPOCK1 NM_004598 exon8 c.T815A p.I272N AGGTAGATGGCAT . 395.0 137.0 349.0 0.0 . 91 SRD5A2 6716 broad.mit.edu;bcgsc.ca 37 2 31756443 31756443 + RNA SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . . TTACCTTGTGGAA . 77.0 6.0 87.0 0.0 . . STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104067722 104067722 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . STAB2 NM_017564 exon23 c.A2409T p.I803I CAGGATAGACAGC . 141.0 13.0 150.0 0.0 . 104 STAT3 6774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40474482 40474482 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . STAT3 NM_003150 exon21 c.A1919T p.Y640F TTTGTGTATGGTT . 390.0 22.0 343.0 0.0 . 1271 STRIP1 85369 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110585809 110585809 + Missense_Mutation SNP C C G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_033088 exon9 c.C985G p.R329G GTGATTCGCAACA . 164.0 50.0 117.0 1.0 . . STXBP4 252983 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 53077023 53077023 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . STXBP4 NM_178509 exon6 c.A318T p.I106I ATTCATAAGACAA . 144.0 8.0 125.0 0.0 . 91 SUPT6H 6830 hgsc.bcm.edu;bcgsc.ca 37 17 27017195 27017196 + Frame_Shift_Del DEL AG AG - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SUPT6H NM_003170 exon26 c.3438_3439del p.1146_1147del CAACACAGAGGAG . 277.0 80.0 269.0 0.0 . 93 SYNGAP1 8831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33403036 33403036 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . SYNGAP1 NM_006772 exon6 c.T617C p.I206T CCATTATCAAGCC . 176.0 50.0 147.0 0.0 . 48 TAF1D 79101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 93471382 93471382 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TAF1D NM_024116 exon3 c.T352C p.S118P TTAGTGAGTATAT . 22.0 8.0 31.0 0.0 . 90 TAF1L 138474 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 32630489 32630489 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TAF1L NM_153809 exon1 c.A5089G p.T1697A TGGCAGTGGAAAT . 215.0 36.0 281.0 0.0 . 870 TAF8 129685 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 42036240 42036240 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TAF8 NM_138572 exon7 c.A675T p.T225T CCTGACAGCTCTT . 302.0 20.0 221.0 0.0 . 91 TAS1R3 83756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1268035 1268035 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TAS1R3 NM_152228 exon3 c.G1124T p.C375F GTGACTGCATCAC . 52.0 13.0 57.0 0.0 . 22 TDRD5 163589 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 179562719 179562719 + Silent SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TDRD5 NM_173533 exon3 c.G357A p.R119R TCATCGGCGAGTA . 360.0 120.0 268.0 1.0 . 94 TENM2 57451 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 167474526 167474526 + Silent SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_001122679 exon6 c.T1281C p.D427D CGATGATGTGGCA . 486.0 136.0 417.0 2.0 . . TEX15 56154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 30703652 30703652 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TEX15 NM_031271 exon1 c.A2882T p.Q961L CGTCCTTGGGATA . 109.0 11.0 103.0 0.0 . 97 TFRC 7037 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 195785461 195785461 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TFRC NM_001128148 exon15 c.A1579T p.N527Y CCCAGTTGCTGTC . 96.0 9.0 71.0 1.0 . 653 TGM6 343641 broad.mit.edu;bcgsc.ca 37 20 2397908 2397908 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TGM6 NM_198994 exon10 c.A1367T p.K456M ACAGCAAGGCGGT . 119.0 6.0 118.0 1.0 . 94 TGM7 116179 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 43571320 43571320 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TGM7 NM_052955 exon11 c.A1834G p.I612V CCTCAATAGACAA . 113.0 6.0 89.0 0.0 . 92 TIMP4 7079 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 12195118 12195118 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TIMP4 NM_003256 exon5 c.A572T p.Q191L TGAGCCTGGTAAC . 485.0 35.0 382.0 0.0 . 226 TIMP4 7079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 12198366 12198366 + Silent SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TIMP4 NM_003256 exon3 c.T306C p.C102C CACACCACAGAGG . 177.0 53.0 135.0 0.0 . 226 TKTL1 8277 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 153558006 153558006 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TKTL1 NM_012253 exon13 c.A1759T p.I587L CATATCATAGTGG . 222.0 16.0 97.0 0.0 . 134 TMEM127 55654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 96919803 96919803 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TMEM127 NM_001193304 exon4 c.A460G p.I154V CCAAGATGAGTTC . 111.0 43.0 155.0 0.0 . 90 TNC 3371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 117844994 117844994 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TNC NM_002160 exon5 c.T2224A p.W742R TCTCCCAGGTTTC . 146.0 61.0 198.0 0.0 . 517 TNF 7124 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31544903 31544903 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TNF NM_000594 exon4 c.A291T p.Q97H CCCTCAAGCTGAG . 64.0 4.0 65.0 0.0 . 1085 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578190 7578190 + Missense_Mutation SNP T T C rs121912666 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 TP53,head_neck,carcinoma,0 TP53 NM_000546 exon6 c.A659G p.Y220C GGCTCATAGGGCA . 158.0 74.0 212.0 0.0 . 70225 TPH1 7166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 18057649 18057649 + Nonsense_Mutation SNP G G C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TPH1 NM_004179 exon2 c.C158G p.S53X CTTTTTGATTTTC . 58.0 13.0 51.0 0.0 . 90 TPSD1 23430 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 1308140 1308140 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TPSD1 NM_012217 exon4 c.A601T p.T201S TATCACACCGGCC . 275.0 14.0 244.0 0.0 . 90 TRHR 7201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110099893 110099893 + Missense_Mutation SNP T T C rs144587571 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TRHR NM_003301 exon1 c.T152C p.M51T TTGTCATGAGAAC . 237.0 101.0 183.0 0.0 T|1.000;G|0.000 620 TRPA1 8989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 72958812 72958812 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TRPA1 NM_007332 exon17 c.C1997A p.P666Q TCTAATGGACATT . 39.0 4.0 37.0 0.0 . 230 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 31325077 31325077 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TRPM1 NM_001252020 exon21 c.A2818T p.I940F CTGTGATGTTCCA . 236.0 10.0 253.0 0.0 . 94 TSHZ3 57616 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 31768845 31768845 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TSHZ3 NM_020856 exon2 c.T1854A p.T618T TTTCTCAGTGACC . 192.0 14.0 169.0 0.0 . 232 TSKU 25987 hgsc.bcm.edu;broad.mit.edu 37 11 76506948 76506950 + In_Frame_Del DEL CAC CAC - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 CAC CAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TSKU NM_015516 exon2 c.288_290del p.96_97del CCTGCTCACCAGC . 211.0 22.0 214.0 0.0 . 90 TTN 7273 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179433349 179433349 + Missense_Mutation SNP G G A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . TTN NM_001267550 exon326 c.C77510T p.P25837L TTCAGTGGGAGAC . 295.0 27.0 279.0 0.0 . 636 UBQLNL 143630 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 5537570 5537570 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . UBQLNL NM_145053 exon1 c.A102T p.I34I CTTCACTATCACT . 138.0 10.0 110.0 0.0 . 136 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19480377 19480377 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . UBR4 NM_020765 exon45 c.A6515T p.N2172I GGGTGGTTCATCA . 430.0 245.0 476.0 2.0 . 612 UGT2B7 7364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 69962549 69962549 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . UGT2B7 NM_001074 exon1 c.C311A p.T104K AAGATACATTTTG . 66.0 28.0 67.0 0.0 . 92 ULK1 8408 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 132396633 132396633 + Silent SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ULK1 NM_003565 exon13 c.A1095G p.P365P GTTTCCAGGTCAG . 75.0 37.0 204.0 2.0 . 758 UNC80 285175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 210782504 210782504 + Missense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . UNC80 NM_032504 exon31 c.C4835T p.A1612V TAGCTGCCATGTT . 124.0 39.0 122.0 0.0 . 90 UPF1 5976 hgsc.bcm.edu;broad.mit.edu 37 19 18967008 18967008 + Nonsense_Mutation SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . UPF1 NM_002911 exon13 c.C1723T p.Q575X GAGCTGCAGAAGC . 130.0 8.0 120.0 0.0 . 91 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215972280 215972280 + Silent SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . USH2A NM_206933 exon50 c.A9927G p.G3309G TTCTTCTCCACCA . 410.0 168.0 284.0 0.0 . 115 USP8 9101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50782610 50782610 + Missense_Mutation SNP A A G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . USP8 NM_001128610 exon14 c.A2122G p.R708G CGGGATAGGGAAC . 146.0 43.0 137.0 0.0 . 658 VPS13D 55187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12313850 12313850 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . VPS13D NM_015378 exon7 c.T636A p.T212T TTGCACTTTACTG . 332.0 109.0 247.0 0.0 . 95 VWA3A 146177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 22126671 22126671 + Silent SNP C C T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . VWA3A NM_173615 exon9 c.C693T p.L231L CAGCCTCCAGGAA . 173.0 36.0 116.0 0.0 . 1 VWCE 220001 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 61026645 61026645 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . VWCE NM_152718 exon20 c.A2370T p.S790S CGAGGGTGATGCT . 145.0 8.0 112.0 0.0 . 91 YTHDC2 64848 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 112889035 112889035 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . YTHDC2 NM_022828 exon13 c.A1846T p.I616F TACAATATCTGCC . 112.0 7.0 79.0 0.0 . 92 ZBED4 9889 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 50278080 50278104 + Frame_Shift_Del DEL ACCTCCCTGCTCTCCATTACGATGA ACCTCCCTGCTCTCCATTACGATGA - novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 ACCTCCCTGCTCTCCATTACGATGA ACCTCCCTGCTCTCCATTACGATGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZBED4 NM_014838 exon2 c.770_794del p.257_265del CTCCCCACCTCCC . 139.0 0.0 164.0 0.0 . 92 ZCCHC11 23318 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 52943444 52943444 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZCCHC11 NM_015269 exon12 c.A1959T p.V653V TATCCGTACACAT . 122.0 11.0 103.0 0.0 . 93 ZEB2 9839 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 145155986 145155986 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZEB2 NM_014795 exon8 c.A2768T p.Y923F CCTGGGTATGGTC . 323.0 99.0 337.0 2.0 . 297 ZIC4 84107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 147108887 147108887 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZIC4 NM_001168378 exon4 c.A985T p.S329C GCGAGCTGGGGTG . 80.0 7.0 172.0 0.0 . 91 ZNF211 10520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58152706 58152706 + Silent SNP T T G novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF211 NM_001265597 exon5 c.T1047G p.P349P AAGGCCTTATGAA . 77.0 23.0 94.0 0.0 . 92 ZNF326 284695 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 90473063 90473063 + Silent SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF326 NM_182976 exon5 c.A369T p.G123G TTTCGGAGGTAGA . 228.0 19.0 151.0 0.0 . 91 ZNF41 7592 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47307358 47307358 + Missense_Mutation SNP T T C novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF41 NM_007130 exon5 c.A1811G p.E604G GGTTTCTCTCCTG . 236.0 202.0 103.0 0.0 . 133 ZNF462 58499 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 109734475 109734475 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF462 NM_021224 exon8 c.T6617A p.I2206N AGAGCATCAGGCG . 229.0 16.0 323.0 0.0 . 95 ZNF547 284306 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 57889239 57889239 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF547 NM_173631 exon4 c.A895T p.S299C GGTTGCAGTGAAT . 130.0 9.0 117.0 0.0 . 91 ZNF585B 92285 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 37677114 37677114 + Missense_Mutation SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF585B NM_152279 exon5 c.A1325T p.H442L CCACAGTGACCAC . 128.0 11.0 139.0 0.0 . 91 ZNF613 79898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52448896 52448896 + Missense_Mutation SNP A A T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF613 NM_001031721 exon6 c.A1760T p.N587I TAACTAACAGTGC . 226.0 80.0 165.0 0.0 . 91 ZNF629 23361 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 30793613 30793613 + Missense_Mutation SNP T T A rs200655215 alternate_allele TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . NM_001080417 exon3 c.A2036T p.Q679L TGATGCTGGAGGA . 186.0 13.0 140.0 0.0 T|0.999;C|0.000 . ZNF773 374928 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 58018242 58018242 + Missense_Mutation SNP C C A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF773 NM_198542 exon4 c.C779A p.A260D GTAATGCTGACCT . 155.0 10.0 125.0 1.0 . 91 ZNF85 7639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 21132284 21132284 + Missense_Mutation SNP G G T novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZNF85 NM_001256171 exon5 c.G1054T p.A352S GGCAAAGCCTTTA . 18.0 12.0 32.0 0.0 . 514 ZPBP 11055 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50129226 50129226 + Silent SNP T T A novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . ZPBP NM_007009 exon2 c.A207T p.P69P AATACCTGGAAAA . 103.0 10.0 97.0 0.0 . 90 SLITRK5 26050 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 88330413 88330414 + Missense_Mutation DNP TT TT AA novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . p.F924N GCTGTCTTTGTAG . 97.0 8.0 88.0 0.0 . . DSCAM 1826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 41384983 41384984 + Missense_Mutation DNP GC GC AG novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . p.A2006L GATTTTGCGTAAG . 134.0 26.0 172.0 0.0 . . CNTNAP2 26047 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 147675070 147675071 + Missense_Mutation DNP GC GC TT novel TCGA-ED-A459-01A-11D-A25V-10 TCGA-ED-A459-10A-01D-A25V-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7fc7b316-f3d3-4e71-9417-423fe334e6bc ba12fec9-e575-4fff-9119-8989b3cf1d18 . . . . . p.C791F TGCGCTGCCAAGG . 260.0 18.0 173.0 0.0 . .