Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	33891885	33891885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADAMTS12	NM_030955	exon1	c.A77G	p.Y26C	CTCCCATAGCAAA	.	361.0	22.0	354.0	0.0	.	232
ADCY2	108	hgsc.bcm.edu;bcgsc.ca	37	5	7396525	7396525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ADCY2	NM_020546	exon1	c.G116A	p.C39Y	ACTACTGCATGAG	.	62.0	4.0	94.0	0.0	.	97
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15909713	15909713	+	Silent	SNP	T	T	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	AGMAT	NM_024758	exon2	c.A450C	p.A150A	GCCAGCTGCTACA	.	63.0	9.0	53.0	0.0	.	91
ARHGEF15	22899	ucsc.edu;bcgsc.ca	37	17	8215882	8215882	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ARHGEF15	NM_025014	exon2	c.C525T	p.L175L	AGGTCTCCAAGCG	.	25.0	4.0	34.0	0.0	.	230
ASIC2	40	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	32483120	32483120	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001094	exon1	c.G432A	p.K144K	GTAGTGCTTGAAG	.	180.0	14.0	135.0	0.0	.	.
BOD1L1	259282	ucsc.edu;bcgsc.ca	37	4	13606024	13606024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_148894	exon10	c.G2500A	p.E834K	TTTTTTCAGCTGA	.	40.0	4.0	40.0	0.0	.	.
CA4	762	hgsc.bcm.edu;broad.mit.edu	37	17	58235740	58235740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CA4	NM_000717	exon7	c.C677T	p.T226I	TCACCACACCGAC	.	130.0	8.0	103.0	0.0	.	226
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	205041630	205041630	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CNTN2	NM_005076	exon21	c.C2751A	p.G917G	TCCTGGCAACATC	.	80.0	8.0	72.0	0.0	.	91
CREBBP	1387	broad.mit.edu;bcgsc.ca	37	16	3817806	3817806	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CREBBP	NM_004380	exon16	c.G3165A	p.V1055V	TACTTTCACTTCA	.	104.0	6.0	83.0	0.0	.	1807
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2949136	2949136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CSMD1	NM_033225	exon48	c.C7187T	p.T2396I	TGTTCAGTATGAT	.	32.0	4.0	29.0	0.0	.	86
CXorf58	254158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	23934445	23934445	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	CXorf58	NM_152761	exon5	c.G423A	p.K141K	AAGTAAGGTGACG	.	152.0	9.0	143.0	0.0	.	130
DMD	1756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	31525469	31525469	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DMD	NM_004006	exon56	c.C8319A	p.V2773V	TAACAGGACTGCA	.	166.0	8.0	133.0	0.0	.	265
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76451796	76451796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	DNAH17	NM_173628	exon63	c.G10100A	p.G3367D	AAGTAGCCCACGT	.	187.0	8.0	198.0	0.0	.	142
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50106573	50106573	+	Silent	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	HEATR3	NM_182922	exon5	c.G570T	p.V190V	GATTGTGTTAAAG	.	82.0	5.0	130.0	0.0	.	92
IRGC	56269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44223141	44223141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	IRGC	NM_019612	exon2	c.G431A	p.R144H	CCCGCCGCTGCGG	.	18.0	9.0	42.0	0.0	.	70
KIAA0930	23313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	45595761	45595761	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	KIAA0930	NM_015264	exon8	c.C1023T	p.D341D	TCCACCGTCGTCC	.	74.0	4.0	69.0	0.0	.	90
LOC100132247	0	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	22545898	22545898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001135865	exon7	c.A1594C	p.T532P	ATCAAGACACCTG	.	47.0	8.0	43.0	0.0	.	.
LRRIQ3	127255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	74507289	74507289	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRIQ3	NM_001105659	exon7	c.T1326A	p.V442V	GGCTACAACTCTT	.	42.0	4.0	44.0	0.0	.	92
LRRK2	120892	ucsc.edu;bcgsc.ca	37	12	40715938	40715938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	LRRK2	NM_198578	exon36	c.C5272T	p.H1758Y	GACAATCATCCAG	.	39.0	4.0	32.0	0.0	.	533
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	47390748	47390748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	MYO5B	NM_001080467	exon28	c.G3606T	p.R1202S	CTCTTGCCTCTGG	.	47.0	4.0	47.0	0.0	.	72
NIPBL	25836	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37016248	37016248	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	NIPBL	NM_015384	exon23	c.C4752T	p.L1584L	ACTACTCCTTAGT	.	81.0	12.0	75.0	1.0	.	293
ODF1	4956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	103572783	103572783	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	ODF1	NM_024410	exon2	c.C424A	p.R142R	AAAGTTCGAGTGA	.	245.0	13.0	192.0	0.0	.	70
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29395394	29395394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR11A1	NM_013937	exon1	c.G25A	p.E9K	TAGTTTCGTTTCC	.	89.0	6.0	68.0	0.0	.	23
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4967860	4967860	+	Silent	SNP	C	C	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR51A4	NM_001005329	exon1	c.G471T	p.L157L	AAGAACCAGGAGC	.	237.0	13.0	206.0	0.0	.	71
OR8B4	283162	hgsc.bcm.edu;broad.mit.edu	37	11	124294075	124294075	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	OR8B4	NM_001005196	exon1	c.G693A	p.E231E	TCTGCCCTCTGCA	.	98.0	4.0	92.0	0.0	.	69
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132193186	132193186	+	Silent	SNP	G	G	A	rs139250180	byfrequency	TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	PLXNA4,NS,carcinoma,-2	PLXNA4	NM_001105543	exon2	c.C267T	p.D89D	GTCCTCGTCCGGC	.	77.0	8.0	87.0	0.0	G|0.999;A|0.001	91
RHBDD2	57414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75511359	75511359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RHBDD2	NM_001040456	exon2	c.G391T	p.D131Y	GTGGAGGATGCCA	.	258.0	21.0	225.0	0.0	.	90
RYR2	6262	broad.mit.edu;bcgsc.ca	37	1	237947093	237947093	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	RYR2	NM_001035	exon90	c.G12081A	p.T4027T	TTTGACGTCGTCT	.	135.0	8.0	137.0	1.0	.	158
SLC13A4	26266	broad.mit.edu;bcgsc.ca	37	7	135376053	135376053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SLC13A4	NM_012450	exon13	c.C1339A	p.L447M	TCCCCAGTGAGTG	.	138.0	6.0	138.0	0.0	.	90
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu	37	18	8824928	8824928	+	Silent	SNP	G	G	A	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_015210	exon15	c.G3420A	p.R1140R	GGGGCGGGCAGGG	.	63.0	4.0	76.0	0.0	.	.
SRC	6714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36031248	36031248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	SRC	NM_005417	exon13	c.C1367G	p.T456S	TGCTGACTGAGCT	.	138.0	12.0	124.0	0.0	.	2731
TMEM229A	730130	broad.mit.edu;bcgsc.ca	37	7	123672068	123672068	+	Silent	SNP	C	C	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	.	NM_001136002	exon1	c.G990A	p.T330T	CCCGCACGTGCGG	.	115.0	5.0	87.0	0.0	.	.
VWA3A	146177	broad.mit.edu;bcgsc.ca	37	16	22152958	22152958	+	Silent	SNP	A	A	T	novel		TCGA-ED-A5KG-01A-11D-A27I-10	TCGA-ED-A5KG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c986f8b-3eb9-493f-89a4-c408397dd414	f9ce62ee-6802-40bc-8021-23159fb6d4eb	.	VWA3A	NM_173615	exon24	c.A2439T	p.S813S	CAAGTCAAGGGAA	.	164.0	14.0	166.0	2.0	.	1