Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACADL	33	hgsc.bcm.edu;bcgsc.ca	37	2	211069378	211069379	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ACADL	NM_001608	exon7	c.797_798insA	p.I266fs	AACCGTATATCTT	.	68.0	12.0	63.0	0.0	.	90
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4724998	4724998	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	AKAP3	NM_006422	exon5	c.G2469A	p.S823S	CAGCACCGACTGC	.	134.0	21.0	96.0	0.0	.	292
ANKH	56172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	14749332	14749332	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ANKH	NM_054027	exon6	c.T771G	p.I257M	GTTGACAATAGGC	.	63.0	10.0	59.0	0.0	.	91
ARID1B	57492	hgsc.bcm.edu;bcgsc.ca	37	6	157099362	157099362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ARID1B	NM_017519	exon1	c.T299A	p.L100H	ACCACCTCCACCA	.	36.0	8.0	28.0	0.0	.	154
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	72891607	72891607	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	BAZ1B	NM_032408	exon7	c.C2184T	p.F728F	TTCTAGGAACTCA	.	79.0	21.0	74.0	0.0	.	159
BRIP1	83990	ucsc.edu;bcgsc.ca	37	17	59821818	59821818	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	BRIP1	NM_032043	exon15	c.C2232T	p.D744D	GATTGCGTCATAG	.	223.0	37.0	214.0	2.0	.	660
CAMTA2	23125	broad.mit.edu;bcgsc.ca	37	17	4877747	4877747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	CAMTA2	NM_001171167	exon12	c.A2018G	p.K673R	ATCCGCTTCTCCA	.	43.0	16.0	49.0	2.0	.	91
CHTOP	26097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153615718	153615718	+	Missense_Mutation	SNP	G	G	A	rs138105302		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	CHTOP	NM_001206612	exon5	c.G422A	p.R141Q	TGCTCCGAGGTGG	.	145.0	13.0	83.0	0.0	G|1.000;A|0.000	90
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65497772	65497772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	CILP	NM_003613	exon5	c.A457G	p.S153G	ATGGGCTCCAGAT	.	51.0	7.0	45.0	1.0	.	97
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130107781	130107781	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	NM_153264	exon6	c.G2220A	p.A740A	AGTAGCGCAGGAT	.	120.0	44.0	110.0	0.0	.	.
CTBP1-AS1	92070	broad.mit.edu;ucsc.edu	37	4	1244558	1244558	+	RNA	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	.	.	.	.	TAGGGGGTGGTGA	.	105.0	5.0	60.0	0.0	.	.
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37630379	37630379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DHX35	NM_021931	exon9	c.C649T	p.R217W	AAATTCCGGGATT	.	53.0	7.0	45.0	0.0	.	226
DNAJA4	55466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78562999	78562999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DNAJA4	NM_018602	exon3	c.G380A	p.R127Q	GTGGACGGATGGC	.	111.0	22.0	83.0	0.0	.	226
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64057564	64057564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	DPY19L2	NM_173812	exon3	c.C424T	p.R142W	TCTCCCGTTCCAA	.	392.0	47.0	509.0	0.0	.	515
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93170633	93170633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	EEA1	NM_003566	exon28	c.T4100C	p.V1367A	ACTGTTACTGAAA	.	83.0	14.0	78.0	0.0	.	229
EIF3E	3646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109240530	109240530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	EIF3E	NM_001568	exon7	c.G688C	p.D230H	TATTATCGCGACC	.	460.0	50.0	251.0	1.0	.	188
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134670256	134670256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	EPHB1,NS,carcinoma,0	EPHB1	NM_004441	exon3	c.G167A	p.R56H	CCATCCGCACCTA	.	74.0	10.0	64.0	0.0	.	1492
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80049392	80049392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	FASN	NM_004104	exon9	c.G1198A	p.V400M	TGTGCACGTTGGA	.	159.0	18.0	127.0	0.0	.	90
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46976276	46976276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	GABRA4	NM_000809	exon6	c.T694C	p.S232P	CACTTGATACGGT	.	84.0	12.0	80.0	0.0	.	156
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13279761	13279761	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	ISM1	NM_080826	exon6	c.C1050T	p.D350D	GAAGGACGCCAGC	.	64.0	6.0	64.0	0.0	.	68
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180907742	180907742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KIAA1614	NM_020950	exon6	c.C2813T	p.T938M	ACTCCACGGGCAT	.	161.0	29.0	97.0	0.0	.	26
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	245530501	245530501	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KIF26B	NM_018012	exon3	c.G831A	p.A277A	TGGGGCGGAAAAG	.	260.0	23.0	152.0	0.0	.	25
KRT19	3880	broad.mit.edu;mdanderson.org	37	17	39684492	39684492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	KRT19	NM_002276	exon1	c.C8T	p.S3F	CTGTAGGAAGTCA	.	35.0	10.0	23.0	0.0	.	90
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	68686790	68686790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	LRRTM3	NM_178011	exon2	c.G116T	p.R39M	GCTGTAGGTGTGA	.	97.0	8.0	92.0	0.0	.	93
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129913861	129913861	+	Missense_Mutation	SNP	C	C	T	rs201650569		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	MKI67	NM_002417	exon7	c.G811A	p.A271T	CTGTTGCGTAATC	.	81.0	18.0	46.0	0.0	.	519
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195487851	195487851	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	MUC4	NM_018406	exon16	c.T14752A	p.S4918T	TGCATGAGCTATC	.	131.0	15.0	82.0	0.0	.	90
NFKBIL1	4795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31515977	31515977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	NFKBIL1	NM_005007	exon2	c.G95A	p.R32H	GCCAACGCCGAGA	.	61.0	7.0	58.0	0.0	.	90
OR10A6	390093	broad.mit.edu;ucsc.edu	37	11	7949333	7949333	+	Nonsense_Mutation	SNP	G	G	A	rs147185885	byfrequency	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR10A6	NM_001004461	exon1	c.C877T	p.R293X	TATTTCGCAAACT	.	119.0	12.0	142.0	0.0	G|1.000;A|0.000	70
OR2T6	254879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248551768	248551768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR2T6	NM_001005471	exon1	c.C859T	p.P287S	TTAAACCCTCTCA	.	152.0	34.0	101.0	0.0	.	71
OR51I1	390063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5461996	5461996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	OR51I1	NM_001005288	exon1	c.T749C	p.V250A	GCCAGCACTGCAC	.	93.0	29.0	85.0	1.0	.	69
PFAS	5198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8170947	8170947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PFAS	NM_012393	exon26	c.G3346A	p.G1116S	GTGGGCGGCTTCA	.	77.0	9.0	54.0	0.0	.	94
PLEKHM2	23207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16059140	16059140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PLEKHM2	NM_015164	exon19	c.C2839T	p.P947S	CTCCCGCCCTGGG	.	28.0	10.0	28.0	0.0	.	23
PLXDC2	84898	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	20432307	20432307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PLXDC2	NM_032812	exon5	c.A625C	p.S209R	GATCCCAGTGTAT	.	112.0	15.0	79.0	1.0	.	93
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158908870	158908870	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	PYHIN1	NM_152501	exon4	c.A412C	p.K138Q	TTGTAGAAAAGAA	.	176.0	17.0	105.0	0.0	.	94
RCC2	55920	broad.mit.edu;bcgsc.ca	37	1	17752173	17752173	+	Silent	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RCC2	NM_001136204	exon3	c.C387T	p.Y129Y	ATTGCGGTAAGCA	.	139.0	42.0	131.0	2.0	.	90
RPS6KA2	6196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	166912106	166912106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RPS6KA2	NM_001006932	exon9	c.G661A	p.D221N	TCTTGTCGTGGTC	.	62.0	6.0	51.0	0.0	.	1405
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38993172	38993172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	RYR1	NM_001042723	exon48	c.C7640T	p.A2547V	AGATGGCGCTGGC	.	37.0	5.0	29.0	0.0	.	100
SCN10A	6336	broad.mit.edu;ucsc.edu	37	3	38791656	38791656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SCN10A	NM_006514	exon12	c.A1775G	p.K592R	GTCTTCTTTTGTC	.	64.0	11.0	66.0	1.0	.	99
SCUBE3	222663	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35210863	35210863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SCUBE3	NM_152753	exon15	c.C1759A	p.L587I	AAGATGCTCAGAA	.	100.0	28.0	79.0	1.0	.	91
SH3PXD2A	9644	broad.mit.edu;mdanderson.org	37	10	105362841	105362841	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SH3PXD2A	NM_014631	exon14	c.T2050A	p.S684T	TTTTGGACAAGGA	.	27.0	5.0	30.0	0.0	.	226
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51961351	51961351	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SIGLEC8	NM_014442	exon1	c.A291G	p.Q97Q	AAGGAGTTGGAAT	.	147.0	24.0	168.0	0.0	.	94
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121630500	121630500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLC15A2	NM_021082	exon4	c.C415A	p.Q139K	GGAGGACAAGTGG	.	86.0	18.0	72.0	0.0	.	91
SLC6A19	340024	broad.mit.edu;bcgsc.ca	37	5	1219158	1219158	+	Silent	SNP	C	C	T	rs141604151		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLC6A19	NM_001003841	exon9	c.C1314T	p.G438G	GGAGGGCGTCGTT	.	99.0	10.0	54.0	0.0	C|1.000;T|0.000	90
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74880711	74880711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SLCO2B1	NM_007256	exon6	c.G683A	p.G228E	TTGTAGGGATCCT	.	79.0	8.0	47.0	0.0	.	154
SMCO2	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27623645	27623645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	NM_001145010	exon2	c.G81T	p.K27N	GACTAAGAAAAAC	.	38.0	4.0	44.0	0.0	.	.
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	217955552	217955552	+	Missense_Mutation	SNP	C	C	T	rs145142638	byfrequency	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	SPATA17	NM_138796	exon8	c.C760T	p.R254C	GAACAACGCTACA	.	290.0	17.0	221.0	0.0	C|0.999;T|0.001	69
TADA2A	6871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35804825	35804825	+	Silent	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TADA2A	NM_001488	exon8	c.T559C	p.L187L	TGGGACTTGAGAG	.	163.0	21.0	139.0	0.0	.	230
TENM2	57451	broad.mit.edu;mdanderson.org	37	5	167675304	167675304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	NM_001122679	exon27	c.C7333T	p.P2445S	CCGGCCCCCTTTA	.	91.0	9.0	83.0	1.0	.	.
TJP1	7082	ucsc.edu;bcgsc.ca	37	15	30010303	30010303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TJP1	NM_003257	exon22	c.A3896G	p.K1299R	GAAGGTTTAGATG	.	134.0	30.0	105.0	1.0	.	95
TMC6	11322	broad.mit.edu;bcgsc.ca	37	17	76120700	76120700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TMC6	NM_001127198	exon8	c.C796G	p.L266V	CCACCAGCAGCAG	.	91.0	6.0	60.0	1.0	.	90
TMEM200A	114801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130761733	130761733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TMEM200A	NM_001258277	exon3	c.C166T	p.R56W	AAAATCCGGCTTT	.	142.0	12.0	108.0	0.0	.	23
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231349708	231349708	+	Silent	SNP	C	C	G	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TRIM67	NM_001004342	exon9	c.C2271G	p.L757L	CAGCCTCAACCGC	.	171.0	23.0	133.0	0.0	.	229
TRPM3	80036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	73477842	73477842	+	Silent	SNP	G	G	A	rs145250735	byfrequency;alternate_allele	TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TRPM3	NM_001007471	exon3	c.C444T	p.G148G	GGAATGGCCACCT	.	191.0	25.0	174.0	1.0	G|0.999;T|0.001	521
TTBK2	146057	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	43164898	43164898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	TTBK2	NM_173500	exon3	c.C128T	p.T43I	TCCCTGGTGAGCA	.	89.0	15.0	71.0	1.0	.	338
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6495427	6495427	+	Silent	SNP	C	C	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	.	NM_006087	exon4	c.G1083A	p.L361L	CATCTTCAGGCCG	.	48.0	10.0	41.0	0.0	.	.
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	100711796	100711796	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	VPS13B	NM_017890	exon36	c.G6165T	p.L2055L	AAACCTGAGTTTC	.	133.0	6.0	77.0	0.0	.	301
XRN1	54464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142103424	142103424	+	Missense_Mutation	SNP	G	G	A	rs141258147		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	XRN1	NM_001042604	exon21	c.C2443T	p.R815C	CTAGACGAACTTC	.	72.0	11.0	100.0	1.0	G|1.000;A|0.000	93
YY1	7528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	100705845	100705845	+	Silent	SNP	G	G	T	novel		TCGA-ED-A66X-01A-11D-A30V-10	TCGA-ED-A66X-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	eb66e2cc-2bbc-465c-8778-a7920ea2c3bc	7b7ee2a3-d880-4f02-a19a-1c79c4b15239	.	YY1	NM_003403	exon1	c.G264T	p.P88P	GCAGCCGCTGGTC	.	47.0	7.0	30.0	0.0	.	226