Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADSL 158 ucsc.edu;bcgsc.ca 37 22 40742604 40742604 + Silent SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ADSL NM_001123378 exon1 c.C42A p.R14R CTACCGCTCACCT . 34.0 4.0 38.0 0.0 . 652 AP2B1 163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33932839 33932839 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . AP2B1 NM_001282 exon4 c.G259T p.A87S ATCATGGCTGTAA . 90.0 34.0 79.0 0.0 . 91 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32641025 32641025 + Missense_Mutation SNP T T C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . BIRC6 NM_016252 exon10 c.T2666C p.F889S ATGGTTTTGAGAG . 184.0 40.0 144.0 0.0 . 233 CDAN1 146059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43027807 43027807 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . CDAN1 NM_138477 exon4 c.C844T p.R282W CTGTCCGGCTGGG . 95.0 23.0 122.0 0.0 . 92 CLDN20 49861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155597357 155597357 + Missense_Mutation SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . CLDN20 NM_001001346 exon2 c.C504A p.F168L CGGATTCATTTCT . 141.0 51.0 147.0 0.0 . 90 COL6A6 131873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 130293202 130293202 + Missense_Mutation SNP A A G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . COL6A6 NM_001102608 exon7 c.A3380G p.H1127R TGAGACACAGAGG . 183.0 74.0 171.0 0.0 . 76 DCLRE1A 9937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 115602174 115602174 + Missense_Mutation SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . DCLRE1A NM_014881 exon6 c.G2593T p.A865S TTACAGCCTCAAA . 98.0 38.0 92.0 0.0 . 228 DYNC2H1 79659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 103029663 103029663 + Missense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . DYNC2H1 NM_001377 exon28 c.T4285A p.F1429I CCAAGATTTTATT . 167.0 60.0 214.0 0.0 . 68 ENTPD1 953 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 97626110 97626110 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ENTPD1 NM_001164178 exon10 c.G1539A p.K513K TCACAAGCCTTCA . 175.0 70.0 184.0 1.0 . 93 FMN2 56776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 240286619 240286619 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . FMN2 NM_020066 exon2 c.G1756A p.A586T CAGAATGCCCAGA . 95.0 82.0 43.0 0.0 . 145 HECW2 57520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 197184307 197184307 + Missense_Mutation SNP C C T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . HECW2 NM_020760 exon9 c.G1307A p.C436Y TCAGAGCAGGTCG . 85.0 29.0 87.0 0.0 . 668 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 185897698 185897698 + Nonsense_Mutation SNP T T G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . HMCN1 NM_031935 exon10 c.T1451G p.L484X TGAACTTAGATAT . 81.0 8.0 49.0 0.0 . 113 IL17RD 54756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57130461 57130461 + Missense_Mutation SNP C C T rs146776354 TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . IL17RD NM_017563 exon13 c.G2180A p.R727H TAGCTGCGGCAAC . 120.0 29.0 118.0 0.0 C|1.000;T|0.000 500 IRF2 3660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 185339323 185339323 + Nonsense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . IRF2 NM_002199 exon5 c.A409T p.K137X TTACCTTGATGTG . 94.0 65.0 183.0 0.0 . 91 ITPR3 3710 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33644858 33644858 + Missense_Mutation SNP G G A rs147513071 byfrequency TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ITPR3 NM_002224 exon27 c.G3514A p.V1172I CAGATCGTCAAGG . 181.0 28.0 234.0 1.0 G|0.999;A|0.001 1085 KIF20B 9585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 91498042 91498042 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . KIF20B NM_016195 exon20 c.G3324A p.A1108A GAGAGCGCTTTCA . 95.0 36.0 102.0 0.0 . 93 MED14 9282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 40511063 40511063 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . MED14 NM_004229 exon31 c.C4360A p.P1454T TCTATGGACGCCC . 409.0 131.0 505.0 1.0 . 289 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49443599 49443599 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . MLL2 NM_003482 exon11 c.C3772T p.R1258W AGAGCCGTAGGGA . 146.0 62.0 193.0 0.0 . 612 NRXN1 9378 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 51255367 51255367 + Nonsense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . NRXN1 NM_004801 exon2 c.C45A p.C15X CGAGAGGCACAGA . 17.0 9.0 16.0 0.0 . 92 ONECUT2 9480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 55103728 55103728 + Silent SNP C C T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ONECUT2 NM_004852 exon1 c.C780T p.P260P CAGCCCCAACTTC . 68.0 29.0 61.0 0.0 . 494 OR4C15 81309 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 55322154 55322154 + Silent SNP G G C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . OR4C15 NM_001001920 exon1 c.G372C p.A124A GGATGCGTGCTTC . 62.0 5.0 41.0 0.0 . 70 OR51S1 119692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4869943 4869943 + Missense_Mutation SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . OR51S1 NM_001004758 exon1 c.C496T p.P166S GCAGGGGCAGATG . 93.0 46.0 82.0 0.0 . 72 OR9G9 504191 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 56468353 56468353 + Missense_Mutation SNP T T A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . . NM_001013358 exon1 c.T490A p.S164T ACGTTTTCCTTTA . 138.0 37.0 156.0 0.0 . . PCDH17 27253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 58299287 58299287 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . PCDH17 NM_001040429 exon4 c.G3339A p.E1113E CAGTGAGATGGGT . 141.0 56.0 107.0 0.0 . 97 PLEKHG3 26030 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65199611 65199611 + Missense_Mutation SNP G G T rs75568560 alternate_allele TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . PLEKHG3 NM_015549 exon10 c.G1169T p.R390L GGCGCCGGCAATC . 176.0 68.0 234.0 1.0 G|1.000;A|0.000 91 PPP1R3F 89801 hgsc.bcm.edu;bcgsc.ca 37 X 49138482 49138483 + Nonsense_Mutation INS - - TAGCCCCCACCTGA novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . PPP1R3F NM_033215 exon3 c.1099_1100insTAGCCCCCACCTGA p.V367_A368delinsVAPTX CCACTGGTAGCCC . 115.0 10.0 179.0 0.0 . 229 RTL1 388015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 101350343 101350343 + Missense_Mutation SNP G G T novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . RTL1 NM_001134888 exon1 c.C783A p.S261R CAGGGGGCTGTTT . 52.0 27.0 67.0 0.0 . 46 SCRT2 85508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 644968 644968 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SCRT2 NM_033129 exon2 c.C271T p.L91L CCGACAGGCTCGA . 30.0 16.0 39.0 0.0 . 90 SNX14 57231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 86223594 86223594 + Silent SNP G G A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SNX14 NM_153816 exon26 c.C2577T p.N859N TTCAGTGTTTTCA . 39.0 5.0 48.0 0.0 . 226 SORL1 6653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 121476237 121476237 + Silent SNP A A G novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . SORL1 NM_003105 exon35 c.A4905G p.A1635A CAAGGCACACAAC . 138.0 70.0 136.0 0.0 . 228 STAB1 23166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52551075 52551075 + Missense_Mutation SNP G G A rs144391932 byfrequency TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . STAB1 NM_015136 exon42 c.G4439A p.R1480Q GGCAGCGGACATG . 130.0 59.0 135.0 0.0 G|1.000;A|0.000 139 ZFC3H1 196441 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 72026111 72026111 + Missense_Mutation SNP C C A novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ZFC3H1 NM_144982 exon15 c.G3001T p.V1001L CTTCCACAACTGG . 82.0 9.0 79.0 1.0 . 138 ZNF69 7620 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 12015547 12015547 + Missense_Mutation SNP T T C novel TCGA-ED-A7PY-01A-11D-A33Q-10 TCGA-ED-A7PY-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0e067207-764e-452a-9e8b-5cf53b052abc f017e474-7862-4fff-8064-742a7c3c8e52 . ZNF69 NM_021915 exon4 c.T293C p.L98P ACAGGCTGAACTT . 121.0 11.0 149.0 0.0 . 91