Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10471887	10471887	+	Silent	SNP	C	C	T	rs145453912	byfrequency;alternate_allele	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APCDD1	NM_153000	exon3	c.C603T	p.A201A	CAAGGCCGTGAAC	.	69.0	26.0	30.0	0.0	C|1.000;G|0.000	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21231993	21231994	+	Frame_Shift_Ins	INS	-	-	CTCTACC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	APOB	NM_000384	exon26	c.7747_7748insGGTAGAG	p.Q2583fs	ACCCTTGCTCTAC	.	146.0	35.0	59.0	0.0	.	175
AQP7	364	ucsc.edu;bcgsc.ca	37	9	33386144	33386144	+	Silent	SNP	G	G	A	rs76209395	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	AQP7	NM_001170	exon6	c.C456T	p.V152V	TGTAGCGACGGGA	.	201.0	38.0	76.0	2.0	G|0.375;A|0.625	90
ARHGAP31	57514	broad.mit.edu;bcgsc.ca	37	3	119101978	119101978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ARHGAP31	NM_020754	exon6	c.T587C	p.L196P	CCTTCCTTGCAGT	.	156.0	10.0	71.0	0.0	.	92
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219222268	219222286	+	Frame_Shift_Del	DEL	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CTACAGATGCTGTTCTTCT	CTACAGATGCTGTTCTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	C2orf62	NM_198559	exon3	c.130_148del	p.44_50del	GAGGAGCTACAGA	.	41.0	16.0	37.0	0.0	.	68
CADM1	23705	hgsc.bcm.edu;broad.mit.edu	37	11	115047284	115047285	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CADM1	NM_014333	exon10	c.1239_1240insG	p.G413fs	ATCGGCTCCTTTG	.	547.0	37.0	141.0	0.0	.	92
CCDC168	643677	hgsc.bcm.edu;ucsc.edu	37	13	103390332	103390332	+	Missense_Mutation	SNP	C	C	T	rs200872789		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001146197	exon4	c.G12715A	p.E4239K	CAACTTCGTGATC	.	924.0	375.0	166.0	0.0	.	.
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	80115731	80115731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CCDC57	NM_198082	exon14	c.C2134T	p.Q712X	CCACCTGCTTCCG	.	49.0	28.0	25.0	0.0	.	24
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85960359	85960359	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDHR1	NM_001171971	exon6	c.C441T	p.D147D	TCAGGACATACCT	.	123.0	62.0	76.0	0.0	.	91
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40085553	40085553	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDK13	NM_003718	exon6	c.T2472C	p.G824G	GGAGGGTCTGGAT	.	154.0	74.0	60.0	0.0	.	548
CDO1	1036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115146946	115146946	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CDO1	NM_001801	exon3	c.A315G	p.T105T	AAATAATGTCTCC	.	302.0	120.0	106.0	0.0	.	154
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	440785	440785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CHL1	NM_006614	exon26	c.A3339T	p.L1113F	ACTATTATTAACT	.	456.0	196.0	120.0	0.0	.	583
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71047619	71047619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CLEC4F	NM_173535	exon1	c.C37A	p.Q13K	CACACTGGTTATC	.	100.0	49.0	54.0	0.0	.	95
COX4I2	84701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	30227827	30227827	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	COX4I2	NM_032609	exon3	c.C174T	p.N58N	ACTCAACGCTGAG	.	22.0	11.0	15.0	0.0	.	227
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97G	p.S33A	CTGGACTCTGGAA	.	239.0	105.0	89.0	0.0	.	24361
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88776355	88776355	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CTU2	NM_001012759	exon3	c.C153T	p.F51F	CTGTTTCAAGGCC	.	102.0	44.0	62.0	0.0	.	23
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101503802	101503802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CUTC	NM_015960	exon5	c.C412T	p.R138C	ATTTGCCGCCCTC	.	174.0	85.0	62.0	0.0	.	153
CYP39A1	51302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46607278	46607278	+	Silent	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP39A1	NM_016593	exon3	c.G441A	p.L147L	ATTCTCCAGTTGT	.	336.0	138.0	108.0	0.0	.	91
CYP4F3	4051	broad.mit.edu;ucsc.edu	37	19	15760906	15760906	+	Silent	SNP	C	C	T	rs61739996		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	CYP4F3	NM_001199209	exon7	c.C831T	p.T277T	CCGCACCCTCCCT	.	100.0	39.0	31.0	0.0	C|0.014;T|0.986	93
DHX37	57647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125453127	125453127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DHX37	NM_032656	exon10	c.G1361T	p.G454V	CACTCGCCACTGT	.	32.0	16.0	19.0	0.0	.	227
DLG4	1742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7097812	7097812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DLG4	NM_001365	exon14	c.C1433T	p.A478V	AACAGGGCCCTGG	.	45.0	30.0	35.0	0.0	.	24
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85043137	85043137	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DNAH6	NM_001370	exon76	c.G12303A	p.K4101K	CTATAAGCCAAGC	.	228.0	85.0	75.0	0.0	.	69
DSPP	1834	hgsc.bcm.edu;broad.mit.edu	37	4	88536644	88536652	+	In_Frame_Del	DEL	AGCAGTGAT	AGCAGTGAT	-	rs200486992		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	AGCAGTGAT	AGCAGTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	DSPP	NM_014208	exon5	c.2830_2838del	p.944_946del	AGTGACAGCAGTG	.	353.0	25.0	81.0	0.0	.	90
EDNRA	1909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	148457097	148457097	+	Silent	SNP	G	G	A	rs200693894		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EDNRA	NM_001957	exon5	c.G816A	p.A272A	CACTGCGATCTTC	.	297.0	127.0	109.0	0.0	.	586
EFCAB14	9813	broad.mit.edu;bcgsc.ca	37	1	47144307	47144307	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_014774	exon11	c.T1314C	p.D438D	CTGAAGATCTGTC	.	89.0	6.0	47.0	0.0	.	.
EFEMP2	30008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65638628	65638628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EFEMP2	NM_016938	exon4	c.G367T	p.D123Y	ACTCACCCACACA	.	58.0	20.0	23.0	0.0	.	91
EXD3	54932	broad.mit.edu;mdanderson.org	37	9	140201464	140201464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	EXD3	NM_017820	exon22	c.G2569T	p.E857X	CGCTCTCCAGCAT	.	34.0	10.0	33.0	0.0	.	90
FCGR3B	2215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161596059	161596059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FCGR3B	NM_001244753	exon4	c.T561G	p.F187L	ATGATGAAAATAC	.	199.0	160.0	100.0	0.0	.	22
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154960711	154960711	+	Missense_Mutation	SNP	A	A	C	rs150372864	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FLAD1	NM_025207	exon2	c.A503C	p.N168T	TCTCCAACCGCTT	.	257.0	73.0	81.0	0.0	A|1.000;G|0.000;T|0.000	93
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172098773	172098773	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	FNDC3B	NM_001135095	exon25	c.T3193C	p.L1065L	ACACAGTTAGAAG	.	101.0	31.0	51.0	0.0	.	155
GALNT4	8693	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	89916794	89916794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_003774	exon1	c.T1533G	p.N511K	CACATAATTTTTT	.	169.0	83.0	59.0	0.0	.	.
GPR137B	7107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236368456	236368456	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	GPR137B	NM_003272	exon6	c.T997A	p.F333I	CATGGATTCAGTC	.	151.0	56.0	47.0	0.0	.	90
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39328060	39328060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HNRNPL	NM_001533	exon12	c.C1675G	p.L559V	AGCCCAGAGTCTC	.	172.0	68.0	69.0	0.0	.	22
HYAL4	23553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123508467	123508467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	HYAL4	NM_012269	exon3	c.C140A	p.P47H	GGAAACCTTTTAT	.	162.0	70.0	60.0	0.0	.	91
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33657110	33657110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ITPR3	NM_002224	exon50	c.C6790A	p.L2264I	CGCCCCCTCATCG	.	75.0	32.0	57.0	0.0	.	1085
KIAA0355	9710	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34791740	34791740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIAA0355	NM_014686	exon2	c.A362C	p.Q121P	ATGTGCAGGAGCA	.	64.0	21.0	33.0	0.0	.	91
KIF19	124602	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	72344027	72344027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	KIF19	NM_153209	exon9	c.A1036G	p.I346V	AAGAACATTAAGA	.	17.0	11.0	12.0	0.0	.	90
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40800132	40800132	+	Silent	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCA5L	NM_152505	exon4	c.A288G	p.K96K	ATACTTTTTCTTC	.	303.0	123.0	109.0	0.0	.	22
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169685155	169685155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	LCP2	NM_005565	exon16	c.T986C	p.L329S	TGGGGCAAAGGTC	.	154.0	63.0	75.0	0.0	.	23
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	128140983	128140984	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	METTL2B	NM_018396	exon8	c.943_944insT	p.V315fs	TTCTATGTGAGAG	.	254.0	41.0	79.0	0.0	.	23
MLL3	58508	broad.mit.edu;bcgsc.ca	37	7	151962169	151962169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLL3	NM_170606	exon8	c.C1138T	p.R380C	CTGCACGTTTTAA	.	367.0	16.0	134.0	0.0	.	1398
MLLT1	4298	ucsc.edu;bcgsc.ca	37	19	6270619	6270619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MLLT1	NM_005934	exon2	c.T164C	p.L55P	TCGTGCAGCCAGA	.	51.0	4.0	36.0	0.0	.	658
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195507026	195507026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC4	NM_018406	exon2	c.C11425A	p.L3809I	CAGGAAGAGGGGT	.	168.0	27.0	75.0	1.0	.	90
MUC6	4588	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1016213	1016213	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MUC6	NM_005961	exon31	c.T6588C	p.P2196P	AAAAAGAGGAGAT	.	219.0	84.0	86.0	1.0	.	23
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15808930	15808930	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	MYH11	NM_001040114	exon41	c.5643delA	p.K1881fs	ATTGCCTTTCTCT	.	93.0	39.0	50.0	0.0	.	666
NBPF14	25832	ucsc.edu;bcgsc.ca	37	1	148004749	148004749	+	Silent	SNP	C	C	T	rs77143638	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NBPF14	NM_015383	exon22	c.G2565A	p.L855L	GTCCTGCAAGACT	.	134.0	45.0	31.0	0.0	C|0.986;T|0.014	91
NBPF9	400818	broad.mit.edu;ucsc.edu	37	1	144828583	144828583	+	Silent	SNP	G	G	A	rs76717388		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	AGTCTTGCAGGAC	.	552.0	119.0	109.0	0.0	G|0.500;A|0.500	.
NLRP12	91662	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54313461	54313461	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NLRP12	NM_144687	exon3	c.C1452T	p.D484D	TAGGCCGTGCTTC	.	120.0	47.0	60.0	1.0	.	211
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	117768410	117768410	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NOS1	NM_000620	exon2	c.C465T	p.P155P	ATTCCCGGGACCC	.	55.0	22.0	25.0	0.0	.	154
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	107824934	107824934	+	Silent	SNP	G	G	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	NRCAM	NM_001037132	exon18	c.C2160T	p.R720R	CATCACGCGGAAG	.	106.0	39.0	42.0	0.0	.	156
OR1E1	8387	broad.mit.edu;ucsc.edu	37	17	3300970	3300970	+	Silent	SNP	C	C	G	rs61735439	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR1E1	NM_003553	exon1	c.G735C	p.L245L	CACAGACAGGTGG	.	166.0	59.0	57.0	0.0	C|0.987;G|0.013	68
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	248263611	248263611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR2L13	NM_175911	exon3	c.G934T	p.E312X	CTGAAAGAATAAT	.	110.0	27.0	32.0	0.0	.	70
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761412	55761412	+	Silent	SNP	C	C	T	rs144082157	byfrequency	TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OR5F1	NM_003697	exon1	c.G690A	p.S230S	CTCCCCCGAATGC	.	127.0	52.0	31.0	0.0	C|0.999;T|0.001	70
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54602893	54602893	+	Splice_Site	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	OSCAR	NM_130771	exon4	c.71-1G>T	.	TGGCCACTAAGGG	.	117.0	50.0	44.0	0.0	.	68
PABPC4L	132430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	135121534	135121534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_001114734	exon2	c.G815T	p.G272V	GTTTTGCCATATT	.	195.0	87.0	62.0	0.0	.	.
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140182753	140182753	+	Silent	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCDHA3	NM_031497	exon1	c.C1971G	p.P657P	TGAACCCTCATTG	.	106.0	48.0	50.0	0.0	.	98
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47773060	47773060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PCNT	NM_006031	exon10	c.A1499G	p.D500G	TGGAAGATTTAGA	.	92.0	25.0	56.0	0.0	.	141
PEX10	5192	ucsc.edu;bcgsc.ca	37	1	2337963	2337963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PEX10	NM_153818	exon5	c.T932C	p.L311P	CAGAACAGGTGGC	.	56.0	5.0	30.0	0.0	.	90
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	77569480	77569480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PHTF2	NM_001127357	exon12	c.C1499A	p.S500X	CTGCTTCAGAACT	.	495.0	183.0	126.0	0.0	.	23
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126733602	126733602	+	Silent	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PLXNA1	NM_032242	exon13	c.C2805A	p.A935A	TGACGCCCTGGTG	.	87.0	37.0	31.0	0.0	.	93
PNMA3	29944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152225435	152225435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PNMA3	NM_013364	exon2	c.A23G	p.D8G	TACAGGACTGGTG	.	117.0	104.0	40.0	0.0	.	600
PRAM1	84106	broad.mit.edu;bcgsc.ca	37	19	8563661	8563661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_032152	exon2	c.A1031G	p.K344R	AGCAGCTTCCTGG	.	84.0	6.0	66.0	0.0	.	.
PRR14L	253143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32111160	32111160	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PRR14L	NM_173566	exon4	c.A2665C	p.T889P	GAATGGTTTTGTT	.	438.0	208.0	123.0	0.0	.	91
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380291	114380291	+	Silent	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	PTPN22	NM_015967	exon13	c.T1731C	p.Y577Y	ATTGTAATAAGAG	.	162.0	60.0	63.0	0.0	.	227
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39310299	39310299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RFC1	NM_002913	exon13	c.G1842T	p.W614C	TCGGAGCCAGCGT	.	563.0	248.0	141.0	0.0	.	230
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56470829	56470829	+	RNA	SNP	C	C	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	.	GAGCTACAACTGT	.	258.0	94.0	78.0	0.0	.	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237774079	237774079	+	Silent	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	RYR2	NM_001035	exon36	c.G4701T	p.S1567S	TCTCTCGGCGGGA	.	181.0	52.0	67.0	0.0	.	158
SLC25A12	8604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	172693690	172693690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC25A12	NM_003705	exon6	c.A553G	p.I185V	CCATGATGTCACT	.	479.0	198.0	127.0	1.0	.	90
SLC4A10	57282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162627522	162627522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SLC4A10	NM_001178016	exon3	c.C121T	p.R41C	GGAACTCGTTCTA	.	137.0	55.0	58.0	1.0	.	229
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	98655111	98655111	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SMURF1	NM_020429	exon4	c.267delA	p.K89fs	TCCCTGTTTCTTG	.	251.0	89.0	94.0	0.0	.	661
SPDYE1	285955	broad.mit.edu;bcgsc.ca	37	7	44047000	44047000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SPDYE1	NM_175064	exon5	c.C766T	p.P256S	ATGAACCCGAGGG	.	380.0	17.0	133.0	1.0	.	91
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115524051	115524051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYCP1	NM_003176	exon29	c.C2477T	p.S826L	TCACATCAGTTGA	.	215.0	96.0	74.0	0.0	.	91
SYNDIG1L	646658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74876039	74876039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	SYNDIG1L	NM_001105579	exon2	c.G409A	p.E137K	CCTCTTCCTCCTG	.	88.0	54.0	72.0	0.0	.	68
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	83358835	83358835	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TMTC2	NM_152588	exon5	c.C1631G	p.A544G	GGTTTGCAGAAGC	.	498.0	193.0	131.0	0.0	.	92
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72168474	72168474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	TNPO1,NS,carcinoma,+1	TNPO1	NM_002270	exon7	c.C605T	p.A202V	CTCACGCTGTTGC	.	223.0	100.0	96.0	0.0	.	228
TRMT10C	54931	broad.mit.edu;bcgsc.ca	37	3	101283980	101283980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	NM_017819	exon2	c.A355G	p.T119A	CTCAAAACCCTTA	.	182.0	8.0	62.0	0.0	.	.
TRMT1L	81627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	185089286	185089287	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRMT1L	NM_030934	exon15	c.2067_2068insT	p.L689fs	GTACTTTAAAAGG	.	410.0	101.0	84.0	0.0	.	92
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33598060	33598060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TRPC4AP	NM_015638	exon12	c.C1441G	p.L481V	CATTCAGCTCCTG	.	277.0	107.0	106.0	0.0	.	91
TTC37	9652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94839530	94839530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	TTC37	NM_014639	exon31	c.G3205A	p.E1069K	TGCTCTCTTTATA	.	154.0	63.0	86.0	0.0	.	94
ZNF527	84503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37879212	37879212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	ZNF527	NM_032453	exon5	c.G261T	p.W87C	AGACTGGGAGTCT	.	240.0	92.0	88.0	0.0	.	70
OR2T4	127074	ucsc.edu;bcgsc.ca	37	1	248525290	248525291	+	Missense_Mutation	DNP	CG	CG	TC	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.V137L	CTTCTACGTGACA	.	1506.0	348.0	144.0	1.0	.	.
SIMC1	375484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175772304	175772305	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-EP-A12J-01A-11D-A12Z-10	TCGA-EP-A12J-10A-01D-A12Z-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73c7f411-7d71-42ff-a525-9e6b3a2eff55	06c493d1-681d-483a-9c11-20d996f21545	.	.	.	.	.	p.FR825LS	GGCCTTCCGCAGC	.	191.0	81.0	73.0	0.0	.	.