Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACADSB	36	ucsc.edu;bcgsc.ca	37	10	124812582	124812582	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACADSB	NM_001609	exon10	c.A1134G	p.A378A	GATTGCAGGACAA	.	41.0	4.0	39.0	0.0	.	92
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160196295	160196295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACAT2	NM_005891	exon5	c.C584T	p.A195V	AGAAAGCTGGCCA	.	70.0	18.0	67.0	0.0	.	91
ADAMTS13	11093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136302887	136302887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADAMTS13	NM_139027	exon13	c.A1454G	p.H485R	GCAGACACATGTG	.	60.0	14.0	71.0	0.0	.	229
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849412	167849412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY10	NM_018417	exon11	c.T1157C	p.V386A	CTGGCAACACCGA	.	123.0	5.0	78.0	0.0	.	493
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	132051783	132051783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY8	NM_001115	exon1	c.T797G	p.L266R	CCCAGGAGCCCGT	.	95.0	20.0	53.0	0.0	.	157
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183452	76183452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AFMID	NM_001145526	exon1	c.A1G	p.M1V	GACGCCATGATGG	.	43.0	12.0	48.0	0.0	.	136
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74270860	74270860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALB	NM_000477	exon2	c.A107G	p.K36R	GGTTTAAAGATTT	.	223.0	48.0	201.0	0.0	.	96
ALLC	55821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3727570	3727570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALLC	NM_018436	exon5	c.C284T	p.A95V	AAGCAGCAAACTT	.	107.0	37.0	93.0	1.0	.	23
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474461	145474461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ANKRD34A	NM_001039888	exon4	c.C1133T	p.P378L	CGGCTCCCTCTCC	.	67.0	11.0	68.0	0.0	.	68
AP2A1	160	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50309033	50309033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AP2A1	NM_014203	exon21	c.C2650T	p.L884F	CTGAGCCTGTGAG	.	47.0	21.0	41.0	1.0	.	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21232125	21232125	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	APOB	NM_000384	exon26	c.7615delG	p.V2539X	GGCCTACCAGAGA	.	138.0	18.0	109.0	0.0	.	175
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109190048	109190048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ARMC2	NM_032131	exon4	c.C313G	p.P105A	GCATCTCCCACCA	.	49.0	16.0	56.0	0.0	.	68
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7047886	7047886	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATN1	NM_001007026	exon7	c.C2760T	p.V920V	CAATGTCCCGGCC	.	43.0	14.0	45.0	0.0	.	139
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110029743	110029743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATXN7L2	NM_153340	exon4	c.413delC	p.A138fs	GTAGGGCCCCAGG	.	115.0	33.0	112.0	0.0	.	92
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628362	156628362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BCAN	NM_021948	exon13	c.C2465A	p.P822H	AGCTGCCCCTGGC	.	63.0	6.0	58.0	0.0	.	516
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61867529	61867529	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BIRC7	NM_139317	exon1	c.81delG	p.Q27fs	CACGCAGGAGCGC	.	79.0	14.0	97.0	0.0	.	659
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111399745	111399745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BUB1	NM_004336	exon20	c.C2414T	p.T805I	CCCTGGGTAGCTT	.	223.0	21.0	203.0	1.0	.	1060
C11orf92	399948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111166919	111166919	+	RNA	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	C11orf92	.	.	.	.	AGCCAGCAACAGC	.	89.0	12.0	88.0	0.0	.	226
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35674288	35674288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CA9	NM_001216	exon1	c.A332C	p.E111A	AGTTAGAGGATCT	.	67.0	19.0	68.0	0.0	.	95
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54445427	54445427	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CACNG7	NM_031896	exon5	c.G708A	p.A236A	CGAGGCGTGGCGC	.	47.0	19.0	59.0	0.0	.	91
CARD18	59082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105009742	105009742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CARD18	NM_021571	exon2	c.C71A	p.A24D	AGCAAGGCATTTA	.	126.0	59.0	118.0	1.0	.	206
CCDC144NL	339184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	20769875	20769875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC144NL	NM_001004306	exon3	c.557delC	p.P186fs	CCCCGTGGGTGCC	.	83.0	13.0	71.0	0.0	.	90
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56597778	56597778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC66	NM_001141947	exon4	c.A169G	p.T57A	AAATCAACACAAG	.	104.0	14.0	119.0	0.0	.	135
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200370	49200370	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC71	NM_022903	exon2	c.G1272T	p.L424L	GAACTTCAGCAGC	.	139.0	23.0	130.0	0.0	.	91
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2417938	2417938	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CD81	NM_004356	exon7	c.G642T	p.V214V	CGCTGTGATCATG	.	38.0	4.0	47.0	0.0	.	650
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54468477	54468477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDC20B	NM_001170402	exon2	c.A65G	p.E22G	ATACTTTCCTTTG	.	54.0	10.0	53.0	0.0	.	90
CDH18	1016	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19473467	19473467	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH18	NM_004934	exon13	c.T2241G	p.A747A	AGACCCAGCTTCT	.	230.0	44.0	225.0	2.0	.	159
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348088	60348088	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH4	NM_001794	exon4	c.G426T	p.L142L	GGCTCTGGACCCC	.	49.0	9.0	49.0	0.0	.	282
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	26881520	26881521	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH9	NM_016279	exon12	c.2095_2096insT	p.Q699fs	TTATCTGAAAAAT	.	165.0	45.0	149.0	0.0	.	99
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15510886	15510886	+	Splice_Site	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDRT1	NM_006382	exon7	c.1232+2T>A	.	GTACCTACGTGTC	.	139.0	57.0	123.0	0.0	.	68
CHAT	1103	ucsc.edu;bcgsc.ca	37	10	50824554	50824554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHAT	NM_020549	exon2	c.A293G	p.H98R	GTCCACACCTCTG	.	43.0	4.0	49.0	1.0	.	514
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	361529	361529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHL1	NM_001253388	exon1	c.G70T	p.A24S	TCAAAAGCAATTG	.	46.0	15.0	26.0	0.0	.	583
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129241310	129241310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHSY3	NM_175856	exon1	c.A788T	p.D263V	ACGACGATGTCTA	.	62.0	22.0	49.0	0.0	.	25
CLEC9A	283420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10205339	10205339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CLEC9A	NM_207345	exon4	c.A53T	p.D18V	CACCAGACACTTA	.	88.0	23.0	83.0	0.0	.	91
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87645119	87645119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CNGB3	NM_019098	exon11	c.A1181C	p.Y394S	CTCAGATACCTGT	.	243.0	77.0	172.0	0.0	.	93
COL7A1	1294	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48612816	48612816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	COL7A1	NM_000094	exon73	c.G6136A	p.G2046S	CCCTGCCTGGGAG	.	40.0	18.0	53.0	1.0	.	160
CORO6	84940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27943827	27943828	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CORO6	NM_032854	exon7	c.896_897del	p.299_299del	AGGCGGCTCGTCG	.	66.0	20.0	63.0	0.0	.	90
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3063095	3063095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSMD1	NM_033225	exon31	c.C4915A	p.P1639T	AGTTTGGTGATAA	.	26.0	18.0	31.0	0.0	.	86
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75969717	75969717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSPG4	NM_001897	exon10	c.G5143A	p.V1715I	CGGGGACCCAGAG	.	38.0	18.0	41.0	0.0	.	229
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTNNB1	NM_001098209	exon8	c.T1161G	p.N387K	CAGGAATCTTTCA	.	130.0	45.0	112.0	0.0	.	24361
CTR9	9646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10797162	10797162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTR9	NM_014633	exon24	c.T3077A	p.L1026H	ATAAACTTAAAAT	.	88.0	16.0	81.0	1.0	.	92
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	11705274	11705274	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTSB	NM_147780	exon9	c.590delC	p.P197fs	GTGCATGGGGGCC	.	52.0	15.0	61.0	0.0	.	90
DAOA	267012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	106142291	106142291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DAOA	NM_172370	exon4	c.C323A	p.A108E	TCATGGCAAGAAA	.	91.0	26.0	64.0	0.0	.	90
DCD	117159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55040929	55040929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DCD	NM_053283	exon2	c.G73T	p.A25S	CAGAGGCGGCCTC	.	57.0	18.0	48.0	0.0	.	91
DDX10	1662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108712068	108712068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	DDX10,NS,carcinoma,0	DDX10	NM_004398	exon15	c.G2112T	p.Q704H	AATGCAGAAATCT	.	230.0	85.0	217.0	0.0	.	1145
DENND2D	79961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111738547	111738547	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DENND2D	NM_024901	exon6	c.A636T	p.S212S	AGTGCCTGAGTCG	.	29.0	7.0	27.0	0.0	.	227
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70192040	70192040	+	Missense_Mutation	SNP	C	C	G	rs201999986	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001080449	exon12	c.G1796C	p.R599P	GGTTCACGAAAGT	.	171.0	23.0	209.0	0.0	.	.
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76565546	76565546	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DNAH17	NM_173628	exon8	c.C1108T	p.L370L	CACTCAGGACTTC	.	77.0	27.0	84.0	0.0	.	142
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585457	7585457	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DSP	NM_004415	exon24	c.G7962A	p.Q2654Q	GGCTCAGGCCTGC	.	86.0	17.0	77.0	0.0	.	518
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56342207	56342207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DST	NM_015548	exon72	c.G13742C	p.C4581S	GGGTGGCAGATAG	.	142.0	38.0	165.0	1.0	.	523
EFHC1	114327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52334232	52334232	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EFHC1	NM_018100	exon7	c.G1239A	p.L413L	AATGCTGGTGAAT	.	61.0	19.0	64.0	0.0	.	93
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38451432	38451432	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EGFLAM	NM_001205301	exon20	c.A2583G	p.R861R	ATCAAGATCAAAT	.	52.0	13.0	48.0	0.0	.	187
EP400NL	347918	hgsc.bcm.edu;broad.mit.edu	37	12	132588784	132588791	+	RNA	DEL	GGGAAGCC	GGGAAGCC	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	GGGAAGCC	GGGAAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	GCTCCAGGGAAGC	.	107.0	20.0	163.0	0.0	.	.
ERGIC1	57222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172359509	172359509	+	Silent	SNP	G	G	A	rs144844076	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ERGIC1	NM_001031711	exon8	c.G612A	p.R204R	GCAGCGGTACTCC	.	50.0	5.0	47.0	0.0	G|0.993;T|0.007	93
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89772242	89772242	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM13A	NM_014883	exon7	c.A936G	p.L312L	ATAACTTAGCCGC	.	62.0	13.0	57.0	0.0	.	70
FAM71A	149647	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	212799352	212799352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM71A	NM_153606	exon1	c.C1133A	p.T378N	TACTGACCAGCAG	.	106.0	30.0	73.0	1.0	.	94
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	127568717	127568717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM84B	NM_174911	exon2	c.G918C	p.E306D	CACTGCCTCTCCG	.	70.0	7.0	49.0	0.0	.	22
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45946402	45946402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FBLN1	NM_006487	exon14	c.A1604G	p.N535S	TCCACAACTGCTC	.	46.0	9.0	38.0	0.0	.	515
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4792915	4792915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FEM1A	NM_018708	exon1	c.A1049C	p.Y350S	ATGACTATTCCAG	.	44.0	13.0	26.0	0.0	.	90
FIGN	55137	hgsc.bcm.edu;bcgsc.ca	37	2	164467480	164467481	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FIGN	NM_018086	exon3	c.862_863insC	p.T288fs	CAGTGGTGGGGGG	.	66.0	11.0	70.0	0.0	.	156
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76024199	76024199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FILIP1	NM_015687	exon5	c.C1349T	p.T450I	AGCTGGGTGCACT	.	227.0	70.0	201.0	0.0	.	94
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39975631	39975631	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FKBP10	NM_021939	exon5	c.C897T	p.D299D	GATGGACGGCACC	.	114.0	16.0	104.0	1.0	.	227
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128482659	128482659	+	Missense_Mutation	SNP	C	C	T	rs200215340		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FLNC	NM_001127487	exon15	c.C2296T	p.R766W	CCCGAGCGGGTAA	.	47.0	19.0	62.0	0.0	.	141
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153471433	153471433	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FMNL2	NM_052905	exon12	c.T1131C	p.D377D	TTTTGATGTAGGA	.	127.0	47.0	149.0	0.0	.	516
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79396668	79396668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FRAS1	NM_025074	exon54	c.G7759T	p.V2587F	GCCATCGTCCTGT	.	83.0	30.0	100.0	0.0	.	68
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151304062	151304062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GLRA1	NM_000171	exon1	c.T49C	p.F17L	TGAAGAATACAAT	.	90.0	28.0	81.0	0.0	.	91
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37367438	37367438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GOLGA4	NM_001172713	exon15	c.C4127A	p.A1376D	TCAATGCTGTCAC	.	125.0	44.0	106.0	0.0	.	93
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353238	45353238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HCN1	NM_021072	exon5	c.A1341T	p.E447D	AATATTTTCCTCA	.	124.0	15.0	103.0	0.0	.	91
HHAT	55733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210637950	210637950	+	Missense_Mutation	SNP	G	G	A	rs143700139		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HHAT	NM_001170587	exon7	c.G961A	p.A321T	CCACCCGCCCTCC	.	172.0	68.0	133.0	1.0	G|1.000;A|0.000	92
IFT140	9742	hgsc.bcm.edu;broad.mit.edu	37	16	1634278	1634278	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IFT140	NM_014714	exon11	c.1299delC	p.S433fs	CCCCGTGGACAGG	.	33.0	11.0	18.0	0.0	.	95
IPO4	79711	broad.mit.edu;mdanderson.org	37	14	24657605	24657605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IPO4	NM_024658	exon3	c.A181G	p.T61A	TGCGGGTCAGCAC	.	8.0	3.0	8.0	0.0	.	226
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237406078	237406078	+	Missense_Mutation	SNP	C	C	T	rs200469019		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCA1	NM_001270585	exon2	c.G85A	p.D29N	CTTTATCGAGTAA	.	157.0	36.0	125.0	0.0	.	23
IQCE	23288	broad.mit.edu;bcgsc.ca	37	7	2646793	2646793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCE	NM_152558	exon21	c.C1901G	p.T634S	CTTCTACCAGGAG	.	65.0	5.0	64.0	0.0	.	226
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182358113	182358113	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGA4	NM_000885	exon11	c.C1215T	p.G405G	CAATGGCCGTGCA	.	115.0	28.0	106.0	0.0	.	230
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124540317	124540317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGB5	NM_002213	exon6	c.A785C	p.K262T	CCAATCTTCTCCT	.	42.0	7.0	43.0	0.0	.	227
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74168404	74168404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KCNE3	NM_005472	exon3	c.G205C	p.A69P	TTACAGCAAATAG	.	98.0	18.0	105.0	0.0	.	69
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10587104	10587104	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KLRC2	NM_002260	exon3	c.G312A	p.P104P	TGTATTCGGGGAA	.	590.0	104.0	562.0	0.0	.	514
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151770044	151770044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRBA	NM_006726	exon26	c.C4265T	p.S1422F	CCAAGAGAACTTG	.	192.0	77.0	164.0	0.0	.	157
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356953	42356953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRFN5	NM_152447	exon3	c.T1125G	p.I375M	TATAATTAAGCTC	.	94.0	34.0	88.0	0.0	.	97
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141806729	141806729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRP1B	NM_018557	exon11	c.G1615T	p.D539Y	TCAAGTCCATTCC	.	220.0	67.0	182.0	0.0	.	311
LRRC52	440699	ucsc.edu;mdanderson.org	37	1	165533062	165533062	+	RNA	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRRC52	.	.	.	.	ATTTAGTTGCCAG	.	122.0	56.0	92.0	0.0	.	91
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74989512	74989512	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LTBP2	NM_000428	exon16	c.C2640A	p.P880P	CTGGCTGGGGTGC	.	42.0	17.0	26.0	0.0	.	92
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56178151	56178151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MAP3K1	NM_005921	exon14	c.C3124G	p.L1042V	GATAAACTTTCCC	.	96.0	28.0	100.0	0.0	.	956
MCF2	4168	broad.mit.edu;bcgsc.ca	37	X	138670589	138670589	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MCF2	NM_001171876	exon25	c.T2607C	p.N869N	ATCTACATTAGAA	.	146.0	8.0	136.0	0.0	.	227
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48450496	48450496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ME2	NM_001168335	exon11	c.A1085T	p.Q362L	GTTATCAGGAACC	.	197.0	27.0	164.0	0.0	.	90
MRC2	9902	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766320	60766320	+	Silent	SNP	G	G	T	rs144406119	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MRC2	NM_006039	exon23	c.G3333T	p.T1111T	GGGCACGGGTATG	.	67.0	25.0	80.0	0.0	G|0.993;A|0.007	117
MUC4	4585	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513177	195513177	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MUC4	NM_018406	exon2	c.C5274A	p.A1758A	AGGGGTGGCCTGA	.	334.0	44.0	307.0	1.0	.	90
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26436361	26436361	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon23	c.C2508A	p.V836V	ACAGGTCCTCTAT	.	106.0	14.0	92.0	0.0	.	1007
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26465727	26465727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon31	c.A4391G	p.H1464R	TCTCGCACCATAA	.	85.0	21.0	102.0	0.0	.	1007
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	78400495	78400495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NAV3	NM_014903	exon8	c.G1177A	p.A393T	GTCAATGCCCGGA	.	121.0	28.0	107.0	0.0	.	279
NKG7	4818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51875422	51875422	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NKG7	NM_005601	exon2	c.T297C	p.F99F	TGCAGCAAAGGCT	.	44.0	9.0	37.0	0.0	.	90
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55453049	55453049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NLRP7	NM_001127255	exon2	c.C31G	p.Q11E	GGGTCTGCAGAGT	.	93.0	24.0	93.0	0.0	.	291
OC90	729330	broad.mit.edu;bcgsc.ca	37	8	133051316	133051316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OC90	NM_001080399	exon7	c.A512G	p.E171G	AAGCACTCTATGG	.	103.0	6.0	63.0	0.0	.	206
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143792372	143792372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR2A12	NM_001004135	exon1	c.A172G	p.M58V	ACACCCATGTATG	.	131.0	44.0	131.0	0.0	.	92
OR6P1	128366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158533217	158533217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR6P1	NM_001160325	exon1	c.T178A	p.Y60N	AAAAGTACATGGG	.	100.0	42.0	64.0	0.0	.	68
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20822996	20822996	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PARP2	NM_005484	exon9	c.A831C	p.A277A	CAAGGCAGGTTAC	.	91.0	30.0	100.0	0.0	.	661
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326459	57326459	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PEG3	NM_001146184	exon9	c.G3351A	p.V1117V	GAGATCCACAAAG	.	64.0	23.0	72.0	0.0	.	164
PGR	5241	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	100999292	100999292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PGR	NM_000926	exon1	c.C510G	p.C170W	AACCTTGCACCCG	.	13.0	5.0	15.0	0.0	.	652
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42436338	42436338	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLA2G4F	NM_213600	exon18	c.A1980T	p.T660T	CGGGTGTGTGTCT	.	34.0	10.0	26.0	0.0	.	94
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40585896	40585896	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLCB2	NM_004573	exon20	c.C2091T	p.R697R	CACGCTGCGTTCT	.	98.0	23.0	91.0	0.0	.	275
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857048	46857048	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPP5C	NM_006247	exon2	c.C165T	p.I55I	GGCCATCGAGCTG	.	78.0	23.0	77.0	0.0	.	227
PROSER1	80209	broad.mit.edu;bcgsc.ca	37	13	39587551	39587551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_025138	exon11	c.G1838A	p.S613N	GTAGGACTTGTGG	.	68.0	4.0	70.0	0.0	.	.
PSD4	23550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113940279	113940279	+	Silent	SNP	C	C	T	rs147089589		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSD4	NM_012455	exon2	c.C246T	p.D82D	TCAGGACGGGCTG	.	87.0	29.0	71.0	1.0	C|1.000;T|0.000	229
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	13	20356641	20356641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSPC1	NM_001042414	exon2	c.T257C	p.V86A	TTTCCCACGAAGA	.	48.0	4.0	40.0	1.0	.	135
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369433	157369433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PTPRN2	NM_002847	exon19	c.C2655G	p.F885L	CACCAGGAAGTCC	.	41.0	9.0	40.0	0.0	.	295
RAB23	51715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57055398	57055398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RAB23	NM_016277	exon7	c.G575T	p.G192V	AAGACACCTGTAT	.	93.0	34.0	95.0	0.0	.	660
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79298691	79298691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RASGRF1	NM_002891	exon15	c.G1951A	p.A651T	CACTGGCGTAGCG	.	74.0	20.0	57.0	0.0	.	662
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103159876	103159876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RELN	NM_173054	exon49	c.A7756T	p.T2586S	TTGGTGTAATCAG	.	121.0	16.0	95.0	0.0	.	574
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3419229	3419229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS12	NM_002926	exon9	c.A2722G	p.R908G	ACCGGGAGGTCCC	.	46.0	5.0	32.0	0.0	.	226
RGS16	6004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182572454	182572454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS16	NM_002928	exon2	c.G65A	p.R22H	CCCAGACGTGTCT	.	143.0	33.0	138.0	1.0	.	227
RNF180	285671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63509811	63509811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RNF180	NM_001113561	exon4	c.G658T	p.A220S	AGATGCGCTACAA	.	116.0	29.0	111.0	1.0	.	90
RPL5	6125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	93307405	93307405	+	Missense_Mutation	SNP	C	C	T	rs200315052		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPL5	NM_000969	exon8	c.C877T	p.R293W	CAGGAGCGGGCTG	.	166.0	47.0	94.0	1.0	C|0.999;T|0.000	90
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154334986	154334986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPRM	NM_019845	exon1	c.C94A	p.Q32K	ACGCCTGGGTGCA	.	30.0	9.0	28.0	0.0	.	204
RRM2B	50484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103237178	103237178	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RRM2B	NM_001172477	exon4	c.C606A	p.I202I	ATTCTCGATGAGA	.	162.0	33.0	71.0	0.0	.	229
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179023595	179023595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RUFY1	NM_025158	exon13	c.C1544T	p.A515V	AGGGGGCTGAGGA	.	39.0	13.0	36.0	0.0	.	157
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169702100	169702100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SELE	NM_000450	exon3	c.C77A	p.T26N	GTGGAGGTGTTGT	.	130.0	17.0	82.0	0.0	.	95
SFT2D2	375035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	168195328	168195328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SFT2D2	NM_199344	exon1	c.T11C	p.L4P	ACAAGCTGAAGAA	.	26.0	10.0	36.0	0.0	.	69
SH3BP5L	80851	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	249106250	249106250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SH3BP5L	NM_030645	exon7	c.A1031G	p.D344G	TGCAGGTCTGAAG	.	20.0	4.0	13.0	0.0	.	90
SHC2	25759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	436421	436421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SHC2	NM_012435	exon6	c.A785G	p.D262G	ACGTAATCCGTCA	.	18.0	5.0	33.0	0.0	.	392
SLC16A12	387700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91193059	91193059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC16A12	NM_213606	exon8	c.G1313T	p.S438I	GTGTAGCTGCCGG	.	53.0	15.0	64.0	1.0	.	69
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18292223	18292223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC39A12	NM_001145195	exon12	c.G1883A	p.C628Y	ATCCATGTGTTCA	.	163.0	65.0	123.0	0.0	.	154
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32000381	32000381	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SNTA1	NM_003098	exon4	c.G909A	p.Q303Q	AGGTACCTGCTCA	.	42.0	14.0	44.0	0.0	.	91
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52948586	52948586	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPATA18	NM_145263	exon10	c.T1389C	p.A463A	CACTGCTCCCTTA	.	63.0	21.0	76.0	0.0	.	72
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158655029	158655029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTA1	NM_003126	exon2	c.A133G	p.R45G	GACCCCTCTCAGC	.	154.0	74.0	102.0	0.0	.	142
SPTAN1	6709	broad.mit.edu;bcgsc.ca	37	9	131377967	131377967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTAN1	NM_001130438	exon41	c.C5205A	p.F1735L	TGCCTTCGACACC	.	68.0	5.0	56.0	0.0	.	158
SRRM5	100170229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44116772	44116772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001145641	exon1	c.G499A	p.G167R	CAAAAAGGGAGCC	.	59.0	15.0	36.0	0.0	.	.
STAT4	6775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191927489	191927489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STAT4	NM_001243835	exon9	c.A940G	p.N314D	CTTACTTCTTGAA	.	149.0	43.0	119.0	0.0	.	914
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854507	89854507	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STEAP2	NM_001244946	exon3	c.A111G	p.G37G	GATTGGAAGTGGA	.	191.0	50.0	177.0	0.0	.	92
STX12	23673	broad.mit.edu;bcgsc.ca	37	1	28144417	28144417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STX12	NM_177424	exon7	c.A632G	p.D211G	TCCATGACCAGGG	.	124.0	6.0	157.0	0.0	.	153
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130428513	130428513	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STXBP1	NM_001032221	exon9	c.C732A	p.L244L	TGTGCTCCATGAA	.	54.0	17.0	53.0	0.0	.	91
TANGO6	79613	broad.mit.edu;bcgsc.ca	37	16	68901085	68901085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_024562	exon4	c.T956C	p.V319A	ATGGTGTTCAGGC	.	65.0	5.0	60.0	0.0	.	.
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	9629277	9629277	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TAS2R1	NM_019599	exon1	c.A868T	p.K290X	GGAACTTTTTTGC	.	107.0	30.0	74.0	0.0	.	93
TBC1D9B	23061	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	179306633	179306633	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TBC1D9B	NM_198868	exon8	c.A1411T	p.K471X	CCCCCTTGGCTCC	.	144.0	47.0	145.0	1.0	.	154
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104506642	104506642	+	Missense_Mutation	SNP	G	G	A	rs182776644	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TDRD9	NM_153046	exon33	c.G3826A	p.V1276I	TTTGACGTTCAAT	.	90.0	25.0	93.0	0.0	G|0.999;T|0.000	70
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69942515	69942515	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TEX11	NM_001003811	exon14	c.C1002T	p.P334P	GTCTAAGGGCATG	.	63.0	43.0	55.0	0.0	.	178
TMEM106C	79022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48359775	48359775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMEM106C	NM_001143843	exon4	c.A406G	p.I136V	CTCACCATCATGG	.	145.0	40.0	127.0	0.0	.	90
TMPRSS13	84000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117784524	117784524	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMPRSS13	NM_001206790	exon5	c.A777G	p.S259S	CTTCTCTGAGTAG	.	60.0	12.0	42.0	0.0	.	91
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424387	67424387	+	Missense_Mutation	SNP	C	C	T	rs146906089		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TPPP3	NM_016140	exon4	c.G337A	p.V113I	CAGTGACGCCCAC	.	65.0	16.0	55.0	0.0	C|1.000;T|0.000	90
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114506845	114506845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIM36	NM_001017397	exon2	c.C138A	p.D46E	GGAGAAGTCTGTC	.	129.0	15.0	108.0	0.0	.	725
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230724096	230724096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIP12	NM_004238	exon3	c.C293T	p.T98I	GATTCAGTATGCT	.	201.0	70.0	156.0	0.0	.	572
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49724529	49724529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TROAP	NM_005480	exon13	c.G1901A	p.G634E	CCCCAGGGCCCTG	.	39.0	15.0	36.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179436094	179436094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon326	c.G74765C	p.R24922T	CTGTCCCTGGAGG	.	170.0	47.0	142.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179636192	179636192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon34	c.C7862A	p.A2621D	GAGATGGCCCCAC	.	119.0	17.0	102.0	0.0	.	636
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34827055	34827055	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UHRF1BP1	NM_017754	exon14	c.C2922G	p.S974S	AGAGTCCCTACAG	.	70.0	27.0	52.0	0.0	.	93
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96141185	96141185	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UNC5C	NM_003728	exon8	c.G1251T	p.S417S	GAGTGCCGAAGAG	.	196.0	73.0	189.0	0.0	.	94
WBSCR28	135886	broad.mit.edu;bcgsc.ca	37	7	73280013	73280013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	WBSCR28	NM_182504	exon3	c.T608G	p.L203R	CCTATCTCATCAC	.	93.0	7.0	108.0	0.0	.	90
WDFY4	57705	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	50151490	50151490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	WDFY4	NM_020945	exon49	c.C7745A	p.S2582X	ACACCTCAGAGGT	.	20.0	5.0	23.0	0.0	.	22
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	42914268	42914268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZMYND12	NM_032257	exon3	c.C294A	p.Y98X	AAAGAGGTATTTC	.	88.0	38.0	119.0	0.0	.	91
ZNF350	59348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52468795	52468795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF350	NM_021632	exon5	c.A911C	p.N304T	ATGAGATTTCCTT	.	183.0	57.0	153.0	0.0	.	227
ZNF469	84627	broad.mit.edu;bcgsc.ca	37	16	88498781	88498781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001127464	exon2	c.G4819A	p.A1607T	TCCACTGCACATC	.	28.0	4.0	34.0	0.0	.	.
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48371172	48371172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF488	NM_153034	exon2	c.G640A	p.V214I	CTTTTGGTTGGTG	.	47.0	13.0	57.0	0.0	.	91
ZNF578	147660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014979	53014979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001099694	exon6	c.C1345A	p.H449N	AGACTTCATACTG	.	114.0	32.0	99.0	1.0	.	.
ZNF626	199777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20807980	20807980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF626	NM_001076675	exon4	c.G703T	p.G235C	CTTTGCCACATTC	.	39.0	8.0	29.0	0.0	.	515
ZNF627	199692	broad.mit.edu;bcgsc.ca	37	19	11728045	11728045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF627	NM_145295	exon4	c.A727G	p.R243G	CATGAAAGGACTC	.	86.0	4.0	101.0	0.0	.	91
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668481	53668481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF665	NM_024733	exon4	c.G1262T	p.R421L	ATTCTTCGATGAT	.	94.0	29.0	74.0	0.0	.	70
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146696966	146696966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF827	NM_178835	exon10	c.G2668A	p.G890R	TCTTCCCATCACT	.	59.0	21.0	59.0	0.0	.	22
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29445870	29445871	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNRF3	NM_001206998	exon8	c.1701_1702del	p.567_568del	TGACTCTGTGGTA	.	43.0	10.0	42.0	0.0	.	69
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118896162	118896163	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G84R	TGGACCCCTTGGC	.	50.0	15.0	41.0	0.0	.	.
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72183571	72183572	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G338F	GTGGTTGGCAAGT	.	65.0	24.0	57.0	0.0	.	.