Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ACTR1B	10120	ucsc.edu;bcgsc.ca	37	2	98274501	98274501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ACTR1B	NM_005735	exon8	c.A830G	p.E277G	ACCACCTCATGGA	.	38.0	5.0	42.0	0.0	.	91
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86265519	86265519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKAP13	NM_006738	exon25	c.T6449G	p.V2150G	TGCTTGTAACTCA	.	138.0	14.0	136.0	0.0	.	258
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	117122236	117122236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKNA	NM_030767	exon10	c.2231delT	p.L744fs	CGGGCCAGGGGGT	.	49.0	11.0	76.0	0.0	.	94
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109444278	109444278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AMMECR1	NM_015365	exon5	c.G791A	p.G264E	TCCCATCCTGTAG	.	72.0	10.0	97.0	0.0	.	130
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86643102	86643102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARHGAP24	NM_001025616	exon3	c.A245T	p.K82M	CAGGGAAGTTCCT	.	172.0	22.0	207.0	0.0	.	227
ARSI	340075	ucsc.edu;bcgsc.ca	37	5	149681722	149681722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARSI	NM_001012301	exon1	c.C215A	p.P72H	AGCGTAGGGGTCT	.	21.0	4.0	37.0	0.0	.	92
ASXL1	171023	bcgsc.ca;mdanderson.org	37	20	31017824	31017824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ASXL1	NM_015338	exon7	c.C686A	p.P229Q	CTGCCCCGCTCCT	.	15.0	3.0	24.0	0.0	.	2057
ATAD2	29028	broad.mit.edu;bcgsc.ca	37	8	124382254	124382254	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ATAD2	NM_014109	exon7	c.A738G	p.E246E	ACCCTCTTCAGAT	.	89.0	5.0	118.0	0.0	.	92
BAZ1A	11177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35231121	35231121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BAZ1A	NM_013448	exon24	c.A4085G	p.K1362R	GCACTTTTCCTGC	.	328.0	36.0	365.0	1.0	.	291
BMP5	653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	55620459	55620459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BMP5	NM_021073	exon7	c.C1237G	p.H413D	GTACGTGGTCAGG	.	266.0	20.0	242.0	0.0	.	516
C9orf57	138240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74667237	74667237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001128618	exon5	c.G461T	p.C154F	TGATTGCAGCAGT	.	79.0	13.0	86.0	0.0	.	.
C9orf84	158401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114462240	114462240	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	C9orf84	NM_173521	exon22	c.T2985C	p.D995D	CTTTACATCCAGT	.	48.0	13.0	61.0	0.0	.	92
CCDC132	55610	broad.mit.edu;bcgsc.ca	37	7	92935295	92935295	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CCDC132	NM_017667	exon18	c.A1608G	p.E536E	AACAGAAGATGTC	.	71.0	4.0	83.0	0.0	.	90
CFB	629	broad.mit.edu;bcgsc.ca	37	6	31917266	31917266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CFB	NM_001710	exon10	c.A1340G	p.D447G	AGAAAGACAATGA	.	75.0	5.0	101.0	0.0	.	91
CHL1	10752	broad.mit.edu;bcgsc.ca	37	3	425546	425546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CHL1	NM_001253388	exon17	c.A2224G	p.K742E	CAACCCAAGGAAA	.	97.0	9.0	133.0	0.0	.	583
CLGN	1047	broad.mit.edu;bcgsc.ca	37	4	141313503	141313503	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CLGN	NM_001130675	exon14	c.A1521G	p.K507K	GTCGGTTTTTTTA	.	243.0	12.0	264.0	1.0	.	93
COL5A1	1289	broad.mit.edu;bcgsc.ca	37	9	137674544	137674544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COL5A1	NM_000093	exon29	c.A2462G	p.D821G	AAGGAGACATGGG	.	78.0	4.0	102.0	0.0	.	524
COQ6	51004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74422552	74422552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COQ6	NM_182476	exon4	c.T402G	p.D134E	TAAGGATAATTTA	.	91.0	17.0	122.0	0.0	.	90
COX18	285521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73923971	73923971	+	Missense_Mutation	SNP	C	C	A	rs201251329	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COX18	NM_173827	exon6	c.G862T	p.V288L	GGCCCACGAAGCT	.	129.0	36.0	123.0	1.0	C|0.999;T|0.001	90
CRY1	1407	broad.mit.edu;bcgsc.ca	37	12	107486610	107486610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CRY1	NM_004075	exon1	c.T130C	p.S44P	TGGAGGAGCCGGC	.	75.0	6.0	82.0	0.0	.	93
DAZAP1	26528	broad.mit.edu;mdanderson.org	37	19	1434862	1434862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DAZAP1	NM_018959	exon12	c.G1175A	p.G392E	GCTTTGGACGAGG	.	24.0	10.0	23.0	0.0	.	153
DENND4A	10260	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65962395	65962395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DENND4A	NM_001144823	exon26	c.A4593T	p.L1531F	AAAGGGTAAGAAG	.	89.0	9.0	103.0	1.0	.	229
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	37621023	37621023	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX35	NM_021931	exon7	c.C537T	p.H179H	AGCCCACGAGAGG	.	130.0	11.0	138.0	0.0	.	226
DHX37	57647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125455935	125455935	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX37	NM_032656	exon8	c.G1104C	p.V368V	GATCACCACCTTG	.	34.0	5.0	45.0	0.0	.	227
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511712	61511712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DIDO1	NM_001193369	exon16	c.G5596A	p.A1866T	CGGGGGCGCCCGT	.	53.0	9.0	50.0	0.0	.	96
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36296584	36296584	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DTHD1	NM_001170700	exon4	c.C1191T	p.N397N	TAAAAACAACCTT	.	152.0	39.0	223.0	0.0	.	46
ELOVL3	83401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103988605	103988605	+	Missense_Mutation	SNP	C	C	T	rs150611171	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ELOVL3	NM_152310	exon4	c.C409T	p.R137C	ATCCTGCGTAAGC	.	98.0	16.0	115.0	1.0	C|0.999;T|0.001	92
EP300	2033	broad.mit.edu;bcgsc.ca	37	22	41569690	41569690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EP300	NM_001429	exon29	c.A4681G	p.S1561G	AATAAGAGCAGCC	.	121.0	6.0	170.0	0.0	.	2011
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34761813	34761813	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EPB41L1	NM_001258329	exon3	c.C114A	p.G38G	CCACGGCCACCCA	.	71.0	17.0	81.0	0.0	.	93
FMN2	56776	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	240371393	240371393	+	Missense_Mutation	SNP	C	C	A	rs201701711	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FMN2	NM_020066	exon5	c.C3281A	p.A1094E	CCGGAGCGGGCAT	.	58.0	13.0	76.0	0.0	C|0.999;T|0.001	145
FPGS	2356	ucsc.edu;bcgsc.ca	37	9	130569924	130569924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FPGS	NM_004957	exon8	c.A701G	p.D234G	TGGGGGATACGGT	.	37.0	4.0	51.0	0.0	.	90
FSD2	123722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83451591	83451591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FSD2	NM_001007122	exon4	c.A922G	p.T308A	CTATTGTTTCCAT	.	220.0	24.0	286.0	0.0	.	90
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747077	121747077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GLI2	NM_005270	exon13	c.G3587A	p.G1196E	GCCCTGGGGGCCT	.	78.0	19.0	63.0	0.0	.	954
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	95.0	28.0	97.0	0.0	C|1.000	4767
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158254023	158254023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GRIA2	NM_000826	exon7	c.G935A	p.R312H	CCTTCCGCAACCT	.	118.0	15.0	121.0	0.0	.	515
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54785172	54785172	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_198510	exon8	c.C1335T	p.N445N	TCCCCGGTTTTCC	.	80.0	24.0	120.0	0.0	.	.
KRT83	3889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52712959	52712959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KRT83	NM_002282	exon2	c.C574A	p.L192M	CCTCCAGCACCTC	.	121.0	31.0	142.0	0.0	.	91
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	38482266	38482266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LIFR	NM_002310	exon20	c.G2725T	p.E909X	GAACCTCAACATT	.	86.0	14.0	90.0	0.0	.	1173
LPPR1	0	broad.mit.edu;bcgsc.ca	37	9	104071698	104071698	+	Silent	SNP	C	C	A	rs145402155	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_207299	exon5	c.C591A	p.P197P	CTTTCCCTCCAAA	.	48.0	4.0	63.0	0.0	C|1.000;T|0.000	.
MID2	11043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	107084301	107084301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MID2	NM_012216	exon2	c.C406T	p.R136X	AGCGAGCGAATTG	.	75.0	12.0	90.0	0.0	.	227
MRPS28	28957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80942420	80942420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MRPS28	NM_014018	exon1	c.T64C	p.F22L	TGAAGAAGAGAAA	.	36.0	4.0	43.0	0.0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060181	9060181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC16	NM_024690	exon3	c.A27265C	p.T9089P	TTGATGTAGCCCC	.	108.0	14.0	111.0	0.0	.	566
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513066	195513066	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC4	NM_018406	exon2	c.C5385A	p.V1795V	GTCGGTGACAGGA	.	411.0	53.0	539.0	0.0	.	90
MYH9	4627	broad.mit.edu;bcgsc.ca	37	22	36737554	36737554	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MYH9	NM_002473	exon3	c.C351T	p.F117F	CACACAGAACAGG	.	73.0	4.0	77.0	0.0	.	292
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211848801	211848801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEK2	NM_002497	exon1	c.C21A	p.D7E	TTCATAGTCCTCA	.	67.0	10.0	80.0	0.0	.	765
NEU1	4758	broad.mit.edu;ucsc.edu	37	6	31829947	31829947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEU1	NM_000434	exon2	c.G181A	p.E61K	GTTGCTCCATGGT	.	42.0	3.0	65.0	0.0	.	91
NPC1	4864	broad.mit.edu;bcgsc.ca	37	18	21140425	21140425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NPC1	NM_000271	exon6	c.G651A	p.M217I	GGGCTCCATCCCA	.	83.0	5.0	83.0	0.0	.	92
NSD1	64324	broad.mit.edu;bcgsc.ca	37	5	176675231	176675231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NSD1	NM_022455	exon11	c.A4547G	p.E1516G	CTGTTGAGGAAGG	.	45.0	4.0	73.0	0.0	.	188
NSUN5P1	155400	broad.mit.edu;mdanderson.org	37	7	75045350	75045350	+	RNA	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NSUN5P1	.	.	.	.	AGCCCTGTGCCAC	.	69.0	25.0	96.0	0.0	.	22
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56720646	56720646	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PAN2	NM_014871	exon7	c.A1017G	p.S339S	GCTGGCTGACACA	.	38.0	4.0	33.0	0.0	.	702
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140736620	140736620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_018917	exon1	c.C1853T	p.A618V	TATTTGCAGTGGG	.	143.0	15.0	177.0	0.0	.	.
PCK1	5105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139386	56139386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1123A	p.E375K	ATTGATGAGCCGC	.	93.0	16.0	134.0	1.0	.	227
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139383	56139383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1120A	p.D374N	GGCATTGATGAGC	.	94.0	16.0	131.0	0.0	.	227
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	58511685	58511685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PDE4D	NM_001104631	exon2	c.G565T	p.E189X	AGGACTCCCGTCG	.	76.0	25.0	97.0	0.0	.	226
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7400976	7400976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	POLR2A	NM_000937	exon7	c.A989T	p.Q330L	CCATGCAGAAGTC	.	73.0	20.0	89.0	0.0	.	91
PRAMEF21	391001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	13742998	13742998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001100114	exon1	c.C187T	p.R63C	TTCCTCCGCCTTC	.	263.0	12.0	323.0	0.0	.	.
PSMB5	5693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23502649	23502649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PSMB5	NM_001144932	exon2	c.A433G	p.M145V	ACACCATGTTGGC	.	44.0	4.0	56.0	0.0	.	91
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	1	11584041	11584041	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTCHD2	NM_020780	exon11	c.G2405C	p.R802P	ACATCCGGACGTC	.	86.0	6.0	85.0	0.0	.	209
PTGES	9536	broad.mit.edu;mdanderson.org	37	9	132502105	132502105	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTGES	NM_004878	exon3	c.T244A	p.F82I	AAAGGAAGGGGTA	.	47.0	7.0	78.0	0.0	.	226
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47452056	47452056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPN23	NM_015466	exon20	c.C2768T	p.T923I	CTTACACCTACCC	.	62.0	18.0	135.0	0.0	.	227
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80862537	80862537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001145026	exon4	c.A443T	p.K148M	CAGGAAAGTCCTT	.	122.0	18.0	98.0	0.0	.	.
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137326002	137326002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	RXRA,NS,carcinoma,0	RXRA	NM_002957	exon9	c.A1190G	p.Y397C	AGGTCTATGCGTC	.	15.0	5.0	30.0	0.0	.	188
SASH1	23328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	148835544	148835544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SASH1	NM_015278	exon9	c.A814G	p.R272G	AGAGTCAGAAAGA	.	38.0	5.0	42.0	0.0	.	90
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24902218	24902218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC5A11	NM_052944	exon9	c.A693G	p.G231G	GGAAGGACTGAAG	.	61.0	12.0	84.0	0.0	.	92
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160141354	160141354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SMC4	NM_005496	exon13	c.T2161G	p.L721V	GACAACTTGGATC	.	103.0	24.0	85.0	0.0	.	291
SULT2B1	6820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49090570	49090570	+	Missense_Mutation	SNP	G	G	A	rs138292714	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SULT2B1	NM_177973	exon3	c.G299A	p.R100Q	GGGAGCGGGCACC	.	53.0	8.0	45.0	0.0	G|1.000;A|0.000	91
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu	37	6	152644792	152644792	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	SYNE1_ENST00000265368,NS,carcinoma,0	SYNE1	NM_182961	exon82	c.G15738A	p.E5246E	TAAGAGCTCTGCT	.	69.0	4.0	86.0	0.0	.	607
TEX35	84066	broad.mit.edu;bcgsc.ca	37	1	178489858	178489858	+	Missense_Mutation	SNP	A	A	G	rs35769219	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001170722	exon7	c.A416G	p.K139R	TGGGAAAGACTCA	.	70.0	4.0	67.0	0.0	A|0.998;G|0.002	.
THSD1	55901	broad.mit.edu;bcgsc.ca	37	13	52972291	52972300	+	Frame_Shift_Del	DEL	CTGGCTCTCT	CTGGCTCTCT	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	CTGGCTCTCT	CTGGCTCTCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	THSD1	NM_018676	exon3	c.88_97del	p.30_33del	CATGGCCTGGCTC	.	58.0	10.0	73.0	0.0	.	94
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100206607	100206607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TM9SF2	NM_004800	exon14	c.A1538G	p.E513G	TTCCTGAACAGTC	.	145.0	24.0	167.0	0.0	.	91
TTLL12	23170	ucsc.edu;bcgsc.ca	37	22	43564888	43564888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TTLL12	NM_015140	exon13	c.T1675C	p.F559L	CCTGGAACAGCTC	.	25.0	4.0	29.0	0.0	.	90
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62182512	62182512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	VPS13C	NM_020821	exon67	c.A9193G	p.T3065A	CATCGGTGAAAAG	.	70.0	16.0	112.0	0.0	.	92
XRCC1	7515	ucsc.edu;bcgsc.ca	37	19	44055801	44055801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	XRCC1	NM_006297	exon10	c.T1121C	p.L374P	AGGCCTAGGACCT	.	32.0	4.0	38.0	0.0	.	912
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	81412242	81412243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZBTB10	NM_023929	exon2	c.1486_1487insA	p.Q496fs	CGGGATCAAAAAA	.	90.0	25.0	72.0	0.0	.	522
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189048	38189048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF607	NM_032689	exon5	c.A1984T	p.I662L	GATGTATACTAAG	.	120.0	22.0	123.0	0.0	.	90
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028241	38028241	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF793	NM_001013659	exon8	c.C681T	p.H227H	ACCCCACGTCTGT	.	72.0	15.0	59.0	0.0	.	68
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	57936066	57936066	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZXDA	NM_007156	exon1	c.C789T	p.G263G	CACCACGCCTGGA	.	36.0	11.0	36.0	0.0	.	131