Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ADAM29 11086 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 175897585 175897585 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ADAM29 NM_001130703 exon4 c.T909A p.F303L AGCTTTTAGAGGA . 215.0 64.0 241.0 1.0 . 729 AIM1 202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 106968959 106968959 + Silent SNP G G T rs199971648 TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . AIM1 NM_001624 exon2 c.G2652T p.P884P TGCCCCGCCCTGT . 99.0 29.0 98.0 0.0 G|0.999;T|0.000 139 AKAP11 11215 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 42872928 42872928 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . AKAP11 NM_016248 exon7 c.A611G p.N204S CATACAATGATGG . 56.0 22.0 87.0 0.0 . 227 APOH 350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 64210647 64210647 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . APOH NM_000042 exon7 c.T906C p.N302N TTCCTTATTTTTG . 187.0 37.0 196.0 0.0 . 90 ARMC9 80210 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 232209780 232209780 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ARMC9 NM_025139 exon21 c.G1972A p.G658S CCCGGCGGCCACA . 92.0 6.0 77.0 0.0 . 91 ATP1A4 480 hgsc.bcm.edu;bcgsc.ca 37 1 160136811 160136811 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ATP1A4 NM_144699 exon9 c.G1300T p.G434C ATCGCTGGCCTCT . 79.0 4.0 65.0 0.0 . 94 AXIN1 8312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 396951 396951 + Silent SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . AXIN1 NM_181050 exon2 c.G75T p.V25V ACCAGGCACTGGG . 91.0 33.0 84.0 0.0 . 684 B2M 567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 45007635 45007635 + Nonsense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . B2M NM_004048 exon2 c.C82T p.Q28X AAGATTCAGGTTT . 103.0 55.0 69.0 0.0 . 93 BCAR1 9564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 75263466 75263466 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . BCAR1 NM_001170714 exon8 c.G2694T p.E898D GCCCAGCTCCTTG . 12.0 5.0 45.0 0.0 . 1145 C21orf33 8209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45553649 45553649 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . C21orf33 NM_198155 exon1 c.G70A p.G24S TCCCCCGGCGGTC . 13.0 9.0 54.0 0.0 . 91 C6orf70 55780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 170159125 170159125 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . C6orf70 NM_018341 exon6 c.G569T p.W190L TCTTATGGCATGG . 287.0 77.0 261.0 0.0 . 91 CACTIN 58509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 3623771 3623771 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . . NM_021231 exon2 c.G557T p.G186V CCCCAGCCCATCT . 110.0 40.0 177.0 0.0 . . CADM1 23705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 115085403 115085403 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . CADM1 NM_014333 exon7 c.G919T p.D307Y CATTATCTGTTTT . 477.0 131.0 546.0 0.0 . 92 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 46792623 46792623 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . CELSR1 NM_014246 exon13 c.G5722T p.V1908L CATCCACACAGTT . 63.0 27.0 113.0 0.0 . 525 CFTR 1080 ucsc.edu;bcgsc.ca 37 7 117176688 117176688 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . CFTR NM_000492 exon7 c.G830T p.W277L ACTGCTGGGAAGA . 36.0 4.0 25.0 0.0 . 518 CSMD3 114788 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 113651094 113651094 + Missense_Mutation SNP G G C rs145905619 alternate_allele TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . CSMD3 NM_198123 exon21 c.C3357G p.D1119E TAAGTAGTCATGA . 159.0 98.0 108.0 1.0 G|1.000;A|0.000 1132 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 bycluster TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 CTNNB1,gallbladder,other,0 CTNNB1 NM_001098209 exon3 c.C98G p.S33C TGGACTCTGGAAT . 287.0 76.0 306.0 0.0 . 24361 DIDO1 11083 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 61512904 61512904 + Silent SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . DIDO1 NM_001193369 exon16 c.G4404T p.A1468A GGGCGTCGCAGCC . 167.0 74.0 154.0 1.0 . 96 DPYSL4 10570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 134012417 134012417 + Nonsense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . DPYSL4 NM_006426 exon8 c.C753A p.Y251X GCTGTACGTCACC . 189.0 84.0 247.0 1.0 . 514 EBF3 253738 hgsc.bcm.edu;bcgsc.ca 37 10 131676057 131676057 + Frame_Shift_Del DEL T T - novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EBF3 NM_001005463 exon7 c.611delA p.N204fs CGAGGGTTGCCTG . 78.0 23.0 94.0 0.0 . 91 ELF1 1997 hgsc.bcm.edu;bcgsc.ca 37 13 41525513 41525513 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ELF1 NM_001145353 exon3 c.C313A p.L105I TGAGGAGTGCCTC . 66.0 4.0 85.0 0.0 . 227 EPB41L4B 54566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 112004035 112004035 + Silent SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EPB41L4B NM_018424 exon16 c.C1464T p.D488D ATGGCTGTCATCT . 231.0 78.0 225.0 0.0 . 92 EPHA7 2045 ucsc.edu;mdanderson.org 37 6 93982124 93982124 + Missense_Mutation SNP G G T rs345713 byfrequency;alternate_allele TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EPHA7 NM_004440 exon6 c.T1341A p.S447R TACTCCACTCACT . 208.0 63.0 191.0 0.0 G|0.910;A|0.090 1453 EPS8L1 54869 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 55598089 55598089 + Missense_Mutation SNP C C G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EPS8L1 NM_133180 exon18 c.C1785G p.F595L GAAATTCTCCCAG . 49.0 10.0 67.0 0.0 . 115 EVPL 2125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 74006234 74006234 + Missense_Mutation SNP C C G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EVPL NM_001988 exon22 c.G3052C p.E1018Q TGACCTCCTTGGT . 120.0 73.0 182.0 0.0 . 93 EXOC5 10640 broad.mit.edu;ucsc.edu;mdanderson.org 37 14 57713485 57713485 + Nonsense_Mutation SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . EXOC5 NM_006544 exon3 c.C214T p.Q72X CTTTCTGACATTG . 125.0 39.0 122.0 1.0 . 137 FBXW7 55294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 153253841 153253841 + Missense_Mutation SNP G G T rs112892452 alternate_allele TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 FBXW7,rectum,adenoma,0 FBXW7 NM_033632 exon6 c.C892A p.P298T CTTTGGGTTCCAG . 124.0 36.0 109.0 0.0 G|0.500;A|0.500 6296 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 79166410 79166410 + Silent SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . FRAS1 NM_001166133 exon4 c.C240T p.A80A AGCTGCCAACCAA . 140.0 47.0 145.0 0.0 . 68 GAD1 2571 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 171700595 171700595 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . GAD1 NM_000817 exon7 c.C679A p.Q227K ATGGAACAAATAA . 182.0 42.0 213.0 0.0 . 91 GPAM 57678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 10 113935464 113935464 + Nonsense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . GPAM NM_020918 exon6 c.G307T p.G103X GCCATCCGCGGTG . 79.0 29.0 64.0 0.0 . 92 GRM5 2915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 88330465 88330465 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . GRM5 NM_000842 exon6 c.G1450A p.V484I TTCCAACGTTGAT . 148.0 50.0 145.0 0.0 . 949 HAPLN1 1404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 82937472 82937472 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . HAPLN1 NM_001884 exon5 c.G908T p.R303L TCACAGCGGTCAT . 269.0 66.0 216.0 0.0 . 580 HERC6 55008 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 89318063 89318063 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . HERC6 NM_017912 exon7 c.A948G p.P316P TGGACCAAGTGAC . 176.0 57.0 166.0 2.0 . 658 IGDCC3 9543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65623843 65623843 + Missense_Mutation SNP C C T rs148656626 byfrequency TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . IGDCC3 NM_004884 exon8 c.G1303A p.V435M AAGACACAGAGAC . 132.0 30.0 162.0 0.0 C|0.999;T|0.001 93 IKZF2 22807 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 213914450 213914450 + Silent SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . IKZF2 NM_016260 exon5 c.C561T p.L187L GGTCCTGAGGTGT . 81.0 30.0 80.0 0.0 . 226 JAK2 3717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 5072525 5072525 + Missense_Mutation SNP A A C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . JAK2 NM_004972 exon13 c.A1675C p.I559L ACAAAGATTTTTA . 78.0 22.0 91.0 0.0 . 75307 JAK3 3718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17947999 17947999 + Silent SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . JAK3 NM_000215 exon13 c.G1725A p.L575L GCTCATCAAGCTC . 130.0 26.0 94.0 0.0 . 2418 KDM3A 55818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 86709144 86709144 + Silent SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KDM3A NM_001146688 exon17 c.G2604A p.T868T CCATACGTTTAAC . 177.0 54.0 169.0 0.0 . 291 KIAA1841 84542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 61324923 61324923 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KIAA1841 NM_032506 exon12 c.G1301T p.G434V CTGTTGGCACTGG . 165.0 43.0 204.0 0.0 . 90 KIR3DX1 90011 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55047101 55047101 + RNA SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KIR3DX1 . . . . GACATTGTGATCA . 121.0 19.0 107.0 0.0 . 91 KLC1 3831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 104153537 104153537 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KLC1 NM_001130107 exon14 c.A1770G p.P590P TGAGCCAAAGAAC . 76.0 18.0 111.0 0.0 . 90 KLHDC4 54758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 87788861 87788861 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KLHDC4 NM_001184856 exon4 c.G308A p.R103K TCCTTTCTGGTAT . 237.0 67.0 238.0 0.0 . 182 KLHL6 89857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183209982 183209982 + Silent SNP C C G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KLHL6 NM_130446 exon7 c.G1599C p.P533P TTCCAGCGGGCTG . 46.0 38.0 106.0 0.0 . 93 KPNA2 3838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 66038335 66038335 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . KPNA2 NM_002266 exon5 c.A437G p.N146S TCACTAACATTGC . 137.0 95.0 169.0 1.0 . 560 LRRC33 375387 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 196387716 196387719 + Frame_Shift_Del DEL TGGG TGGG - novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 TGGG TGGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . LRRC33 NM_198565 exon3 c.1202_1205del p.401_402del GCTGCCTGGGCAG . 38.0 27.0 52.0 0.0 . 92 LRRC33 375387 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 196387720 196387721 + Frame_Shift_Ins INS - - A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . LRRC33 NM_198565 exon3 c.1206_1207insA p.G402fs CCTGGGCAGCCTG . 39.0 28.0 57.0 0.0 . 92 LRRIQ1 84125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 85441061 85441061 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . LRRIQ1 NM_001079910 exon6 c.A491G p.E164G AAGTGGAAGAAAA . 115.0 23.0 117.0 0.0 . 95 MAB21L1 4081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 36049768 36049768 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MAB21L1 NM_005584 exon1 c.A508T p.I170F GCGTGATCTGCAC . 174.0 42.0 231.0 0.0 . 92 MANBA 4126 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 103590162 103590162 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MANBA NM_005908 exon10 c.T1275C p.D425D GCCCTGATCAGTT . 127.0 35.0 152.0 1.0 . 91 MAP4K4 9448 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 102480445 102480445 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MAP4K4 NM_001242560 exon16 c.A1774G p.K592E GACTCTAAGTCAG . 148.0 43.0 151.0 1.0 . 547 MIR892B 100126307 broad.mit.edu;ucsc.edu;mdanderson.org 37 X 145078746 145078746 + RNA SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . . . . . . AGCCAGTGACATA . 174.0 107.0 226.0 0.0 . . MKI67 4288 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 129904790 129904790 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MKI67 NM_002417 exon13 c.A5314T p.R1772W GTTTCCTAAATGC . 238.0 47.0 201.0 1.0 . 519 MN1 4330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28193384 28193384 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MN1 NM_002430 exon1 c.A3148T p.S1050C TCGTGCTCACCTC . 51.0 16.0 93.0 0.0 . 993 MYH15 22989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 108204062 108204062 + Silent SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . MYH15 NM_014981 exon12 c.C1050A p.I350I GCCCAAGATGTCC . 121.0 66.0 125.0 0.0 . 73 NET1 10276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5488742 5488742 + Missense_Mutation SNP A A T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . NET1 NM_005863 exon1 c.A14T p.D5V CACATGATGAGAC . 77.0 10.0 71.0 0.0 . 290 NFASC 23114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204937427 204937427 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . NFASC NM_015090 exon9 c.G790A p.A264T GGCACCGCGAGCA . 104.0 30.0 132.0 0.0 . 139 NFU1 27247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 69642381 69642381 + Silent SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . NFU1 NM_001002755 exon5 c.A420T p.T140T CATGATTGTTGCA . 217.0 53.0 245.0 0.0 . 90 NUP153 9972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 17637675 17637675 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . NUP153 NM_005124 exon16 c.A2173G p.T725A CCCAAGTGCCTAT . 338.0 207.0 280.0 0.0 . 637 OGN 4969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 95155381 95155381 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . OGN NM_033014 exon4 c.T414C p.D138D TGCAAAATCTTTG . 189.0 71.0 174.0 0.0 . 492 OR4A47 403253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 48510880 48510880 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . OR4A47 NM_001005512 exon1 c.T536A p.M179K GTGACATGTATCC . 331.0 77.0 268.0 0.0 . 92 PALM2-AKAP2 445815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 112694224 112694224 + Missense_Mutation SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 PALM2-AKAP2,nipple,malignant_melanoma,-1 PALM2-AKAP2 NM_007203 exon6 c.T412A p.S138T TACATTTCCTCCC . 84.0 33.0 102.0 0.0 . 475 PC 5091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66616778 66616778 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PC NM_000920 exon21 c.G3211T p.A1071S GGCCGGCCCGGTT . 136.0 94.0 155.0 0.0 . 228 PCDHB1 29930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140433269 140433269 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PCDHB1 NM_013340 exon1 c.C2214A p.N738K CTCTAACAACCTG . 135.0 36.0 129.0 0.0 . 90 PLEC 5339 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144991598 144991598 + Missense_Mutation SNP A A C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PLEC NM_201380 exon32 c.T12802G p.S4268A TGGAGGACGTCTT . 145.0 21.0 91.0 1.0 . 141 PSG4 5672 broad.mit.edu;ucsc.edu;mdanderson.org 37 19 43699214 43699214 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PSG4 NM_002780 exon4 c.T921C p.C307C TTGATAAGGTCCT . 129.0 24.0 114.0 0.0 . 91 PTPRT 11122 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 41101120 41101120 + Silent SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PTPRT NM_007050 exon8 c.C1236T p.Y412Y CACCGCGTAGCCG . 231.0 24.0 138.0 0.0 . 664 PUM2 23369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 20490545 20490545 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . PUM2 NM_015317 exon9 c.C1159G p.R387G CAGCACGGAGAAC . 103.0 36.0 137.0 0.0 . 91 QPCT 25797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 37580079 37580079 + Splice_Site SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . QPCT NM_012413 exon2 c.267+1G>T . CGTCAGGTGAGAA . 42.0 20.0 34.0 0.0 . 90 RAB27A 5873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 55527010 55527010 + Silent SNP T T A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . RAB27A NM_183235 exon3 c.A123T p.T41T GCCCACTGTTGTG . 109.0 16.0 92.0 0.0 . 228 RAD51AP2 729475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 17696823 17696823 + Nonsense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . RAD51AP2 NM_001099218 exon1 c.G2860T p.E954X GAGCTTCTGTTGA . 123.0 44.0 160.0 0.0 . 23 RFC5 5985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 118456923 118456923 + Missense_Mutation SNP C C G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . RFC5 NM_007370 exon2 c.C112G p.Q38E TCTCATCAGGACA . 88.0 24.0 53.0 0.0 . 227 RPL3 6122 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 39709288 39709288 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . RPL3 NM_000967 exon9 c.G1075T p.A359S CCAGAGCCCGCCG . 141.0 34.0 141.0 0.0 . 154 SERPINA9 327657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 94936087 94936087 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SERPINA9 NM_175739 exon2 c.C145A p.P49T GGCGGGGGTATGC . 109.0 37.0 119.0 0.0 . 226 SH2D2A 9047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156785887 156785887 + Splice_Site SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SH2D2A NM_003975 exon3 c.35-1G>A . GACTCCCTGTGAG . 126.0 42.0 152.0 0.0 . 90 SIPA1L1 26037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 72190403 72190403 + Silent SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SIPA1L1 NM_015556 exon16 c.C4311T p.F1437F GGTTTTCACCAGT . 97.0 32.0 149.0 0.0 . 156 SLC22A16 85413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 110752455 110752455 + Missense_Mutation SNP G G T rs145203259 bycluster;byfrequency;alternate_allele TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SLC22A16 NM_033125 exon7 c.C1440A p.S480R GCTGCCGCTTCCC . 28.0 14.0 43.0 0.0 G|0.998;C|0.002 91 SLC30A10 55532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 220088994 220088994 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SLC30A10 NM_018713 exon4 c.G1255T p.A419S GCAGTGCCCCGGG . 201.0 56.0 224.0 0.0 . 90 SPAG16 79582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 214354720 214354720 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SPAG16 NM_024532 exon10 c.C976T p.P326S CCAAATCCAAACC . 106.0 36.0 97.0 0.0 . 188 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 220348819 220348819 + Nonsense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SPEG NM_005876 exon30 c.C6634T p.Q2212X CCTGCCCAAGACA . 64.0 24.0 158.0 0.0 . 383 SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 54858501 54858501 + Missense_Mutation SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SPTBN1 NM_003128 exon16 c.A3317G p.N1106S ACGAGAACATCAA . 201.0 61.0 201.0 0.0 . 140 SSH2 85464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28022497 28022497 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . SSH2 NM_033389 exon4 c.C256G p.P86A CTTCTGGGCGGAG . 130.0 74.0 142.0 0.0 . 92 STK33 65975 hgsc.bcm.edu;broad.mit.edu 37 11 8474374 8474374 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . STK33 NM_030906 exon9 c.A866G p.Y289C CCCATATAGATAG . 88.0 5.0 53.0 0.0 . 337 TCTEX1D1 200132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67242056 67242056 + Silent SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . TCTEX1D1 NM_152665 exon4 c.C306T p.L102L AGAGCTCTGTAGA . 144.0 51.0 180.0 0.0 . 90 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 78380651 78380651 + Missense_Mutation SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . . NM_001098816 exon32 c.C6739T p.R2247W CCAGCCGAGTGAT . 256.0 86.0 308.0 1.0 . . TERF1 7013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 73921159 73921159 + Missense_Mutation SNP G G C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . TERF1 NM_017489 exon1 c.G38C p.R13P GCCCGCGGGGCTG . 318.0 48.0 241.0 0.0 . 228 THAP11 57215 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67877084 67877084 + Silent SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . THAP11 NM_020457 exon1 c.G627T p.S209S CGCGTCGGAGTTA . 19.0 5.0 41.0 0.0 . 90 TNFRSF18 8784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1139782 1139782 + Missense_Mutation SNP G G T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . TNFRSF18 NM_148902 exon3 c.C395A p.T132K CACTCTGTCCAAG . 84.0 21.0 118.0 0.0 . 227 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577141 7577141 + Missense_Mutation SNP C C A rs193920774 alternate_allele TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 TP53,NS,carcinoma,0 TP53 NM_000546 exon8 c.G797T p.G266V TTCCGTCCCAGTA . 76.0 39.0 66.0 0.0 . 70225 TRPS1 7227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 116427073 116427073 + Silent SNP A A G novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . TRPS1 NM_014112 exon7 c.T3063C p.G1021G CAATGAACCCTGG . 302.0 45.0 170.0 0.0 . 229 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216062335 216062335 + Silent SNP G G A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . USH2A NM_206933 exon41 c.C7656T p.T2552T CTGCCAGGTGACC . 41.0 14.0 45.0 0.0 . 115 USP48 84196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 22084166 22084166 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . USP48 NM_001032730 exon2 c.G245T p.R82M TTTCTCCTCTCAC . 79.0 24.0 86.0 0.0 . 659 VWA1 64856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1372313 1372313 + Missense_Mutation SNP C C T novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . VWA1 NM_022834 exon2 c.C80T p.P27L GTCCACCAGCATC . 127.0 35.0 185.0 0.0 . 22 WDR27 253769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 170065609 170065609 + Missense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . WDR27 NM_182552 exon7 c.G756T p.Q252H GACCAGCTGCCTG . 150.0 30.0 93.0 0.0 . 69 ZNF318 24149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 43322734 43322734 + Nonsense_Mutation SNP C C A novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ZNF318 NM_014345 exon4 c.G2338T p.G780X CAGGTCCCTGGTA . 529.0 113.0 335.0 0.0 . 157 ZNF512B 57473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62591366 62591366 + Missense_Mutation SNP T T C novel TCGA-FV-A4ZQ-01A-11D-A25V-10 TCGA-FV-A4ZQ-10A-01D-A25V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d02597f8-3ac7-4165-a65f-0e134e5d215b 813ef938-cbe3-456a-ba15-01bca99c2880 . ZNF512B NM_020713 exon17 c.A2554G p.T852A CTGGGGTCCGCTC . 56.0 10.0 52.0 0.0 . 90