Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq A2ML1 144568 ucsc.edu;bcgsc.ca 37 12 9010546 9010546 + Missense_Mutation SNP A A T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . A2ML1 NM_144670 exon26 c.A3112T p.T1038S AGGCTGACAGCGT . 46.0 4.0 68.0 0.0 . 93 AADAC 13 ucsc.edu;bcgsc.ca 37 3 151545758 151545758 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . AADAC NM_001086 exon5 c.C998A p.P333H GCTTACCCCTGAC . 45.0 4.0 53.0 0.0 . 280 ABR 29 ucsc.edu;bcgsc.ca 37 17 975919 975919 + Missense_Mutation SNP A A G rs200320950 TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ABR NM_021962 exon8 c.T829C p.F277L ACAGGAAGTTCTG . 31.0 5.0 83.0 0.0 A|1.000;G|0.000 91 ADAMTS7 11173 ucsc.edu;bcgsc.ca 37 15 79058506 79058506 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ADAMTS7 NM_014272 exon19 c.C3747T p.T1249T GGAGTGGGTGCTG . 25.0 4.0 48.0 0.0 . 226 ADORA2B 136 ucsc.edu;bcgsc.ca 37 17 15878047 15878047 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ADORA2B NM_000676 exon2 c.G390T p.W130C CCTCTGGGTCCTT . 45.0 5.0 87.0 0.0 . 228 AGO1 26523 ucsc.edu;bcgsc.ca 37 1 36367825 36367825 + Silent SNP C C T rs199936275 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_012199 exon11 c.C1284T p.P428P CACACCCAATCAG . 46.0 4.0 29.0 0.0 C|0.999;A|0.000 . AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 62290411 62290411 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . AHNAK NM_001620 exon5 c.G11478T p.V3826V CAGGTTCACATCC . 81.0 34.0 71.0 0.0 . 109 ALDH1A2 8854 ucsc.edu;bcgsc.ca 37 15 58247428 58247428 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ALDH1A2 NM_003888 exon13 c.G1524T p.T508T TGTCACCGTCTTA . 76.0 6.0 77.0 0.0 . 226 AMER1 139285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 63410591 63410591 + Missense_Mutation SNP T T A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_152424 exon2 c.A2576T p.Y859F CCTTGGTAGAATC . 82.0 36.0 107.0 0.0 . . ANGPT4 51378 ucsc.edu;bcgsc.ca 37 20 896833 896833 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ANGPT4 NM_015985 exon1 c.C25A p.Q9K TGCCCTGCAGCAT . 27.0 4.0 38.0 0.0 . 92 APAF1 317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 99117014 99117014 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . APAF1 NM_181861 exon23 c.A3128G p.H1043R GAGGCCATCAGGA . 123.0 48.0 113.0 0.0 . 229 ARAP1 116985 ucsc.edu;bcgsc.ca 37 11 72407664 72407664 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ARAP1 NM_001040118 exon23 c.C3202A p.R1068R GCTCTCGGTACCT . 34.0 5.0 26.0 0.0 . 91 ARHGAP33 115703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36272086 36272086 + Missense_Mutation SNP T T G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ARHGAP33 NM_052948 exon12 c.T1017G p.I339M GTTCATTGAGGCC . 42.0 19.0 34.0 0.0 . 229 ARHGEF39 84904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35662720 35662720 + Missense_Mutation SNP T T A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_032818 exon7 c.A692T p.Q231L CAGCCCTGGCGTA . 94.0 34.0 57.0 0.0 . . ARHGEF40 55701 ucsc.edu;bcgsc.ca 37 14 21550138 21550138 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ARHGEF40 NM_018071 exon14 c.C3111A p.I1037I GCTGATCCGAGGC . 40.0 4.0 40.0 0.0 . 228 ARID1B 57492 ucsc.edu;bcgsc.ca 37 6 157502181 157502181 + Missense_Mutation SNP T T A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ARID1B NM_020732 exon12 c.T3214A p.W1072R AAGCTCTGGGTCG . 34.0 4.0 25.0 0.0 . 154 ATP5G2 517 ucsc.edu;bcgsc.ca 37 12 54063081 54063081 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ATP5G2 NM_005176 exon4 c.C333T p.V111V GCTAGAGACAAGT . 38.0 4.0 38.0 0.0 . 91 BEST4 266675 ucsc.edu;bcgsc.ca 37 1 45251285 45251285 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . BEST4 NM_153274 exon5 c.C700A p.L234I AGACGAGGGGGAT . 56.0 4.0 52.0 0.0 . 91 BICD1 636 ucsc.edu;bcgsc.ca 37 12 32520626 32520626 + Missense_Mutation SNP C C A rs202246949 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . BICD1 NM_001003398 exon8 c.C2483A p.P828Q TGCCTCCGTACCG . 20.0 4.0 31.0 0.0 . 153 BIRC3 330 ucsc.edu;bcgsc.ca 37 11 102206714 102206714 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . BIRC3 NM_001165 exon7 c.C1342T p.R448W TTAATCCGGAAGA . 24.0 4.0 36.0 0.0 . 662 BOC 91653 broad.mit.edu;ucsc.edu 37 3 112991401 112991401 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . BOC NM_033254 exon7 c.T812C p.V271A CCAGTGTCACCGG . 63.0 7.0 84.0 1.0 . 157 BTK 695 broad.mit.edu;bcgsc.ca 37 X 100611053 100611053 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . BTK NM_000061 exon15 c.T1553C p.L518P CGGTGAAGGAACT . 72.0 5.0 70.0 0.0 . 1395 C10orf12 26148 ucsc.edu;bcgsc.ca 37 10 98741664 98741664 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . C10orf12 NM_015652 exon1 c.C517A p.H173N GAATGCCACTTTG . 20.0 4.0 49.0 0.0 . 92 C10orf2 56652 ucsc.edu;bcgsc.ca 37 10 102750244 102750244 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . C10orf2 NM_021830 exon3 c.T1536C p.H512H TTGTCATGTGATC . 24.0 4.0 53.0 0.0 . 69 C10orf35 219738 ucsc.edu;bcgsc.ca 37 10 71392795 71392795 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . C10orf35 NM_145306 exon4 c.T346C p.S116P CTGGTGTCCCACC . 58.0 8.0 112.0 0.0 . 92 C11orf35 256329 ucsc.edu;bcgsc.ca 37 11 557033 557033 + Missense_Mutation SNP G G A rs147157097 byfrequency TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . C11orf35 NM_173573 exon8 c.C778T p.R260W GATGCCGCTCGGA . 35.0 4.0 58.0 0.0 G|1.000;A|0.000 69 C12orf56 115749 ucsc.edu;bcgsc.ca 37 12 64661044 64661044 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . C12orf56 NM_001170633 exon13 c.G1788A p.L596L TTTCTGCAAGGCT . 33.0 4.0 31.0 0.0 . 68 CACNA1A 773 broad.mit.edu;bcgsc.ca 37 19 13476249 13476249 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CACNA1A NM_001127221 exon5 c.G666T p.A222A GATCATCGCCTTC . 83.0 6.0 85.0 2.0 . 67 CALCR 799 broad.mit.edu;bcgsc.ca 37 7 93072939 93072939 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CALCR NM_001164737 exon11 c.G881T p.R294L TACCACCGCAAGC . 84.0 6.0 68.0 0.0 . 664 CAP2 10486 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 17463259 17463259 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CAP2 NM_006366 exon4 c.G255A p.Q85Q GGCCCAGCGGGCT . 64.0 34.0 49.0 0.0 . 91 CAPNS2 84290 ucsc.edu;bcgsc.ca 37 16 55601229 55601229 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_032330 exon1 c.A561G p.E187E AAATGAACAACTT . 44.0 4.0 64.0 0.0 . . CATSPER1 117144 ucsc.edu;bcgsc.ca 37 11 65786337 65786337 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CATSPER1 NM_053054 exon10 c.A2162G p.K721R AGCCGCTTCAGCA . 30.0 4.0 27.0 0.0 . 92 CCDC13 152206 ucsc.edu;bcgsc.ca 37 3 42750572 42750572 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CCDC13 NM_144719 exon16 c.G2048T p.R683L TTTCCCCGCAGGG . 34.0 5.0 62.0 0.0 . 91 CCR7 1236 ucsc.edu;bcgsc.ca 37 17 38715178 38715178 + Missense_Mutation SNP G G T rs193282140 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CCR7 NM_001838 exon2 c.C27A p.S9R CAGCACGCTTTTC . 39.0 5.0 61.0 0.0 G|0.999;A|0.001 659 CD1E 913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158325802 158325802 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CD1E NM_030893 exon4 c.G811A p.A271T CTCCGAGCAACCC . 128.0 41.0 92.0 0.0 . 93 CELF3 11189 ucsc.edu;bcgsc.ca 37 1 151681762 151681762 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CELF3 NM_007185 exon4 c.A340G p.M114V CAAACATCTTCCG . 43.0 5.0 30.0 0.0 . 91 CEP70 80321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 138219253 138219253 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CEP70 NM_024491 exon15 c.C1525T p.L509F CTAAGAGTTCTTG . 196.0 76.0 120.0 0.0 . 69 CERKL 375298 ucsc.edu;bcgsc.ca 37 2 182423419 182423419 + Missense_Mutation SNP C C T rs78484040 by1000genomes TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CERKL NM_001030311 exon6 c.G772A p.G258R CATCTCCACCAAC . 38.0 4.0 32.0 0.0 C|0.999;T|0.000 228 CFHR5 81494 ucsc.edu;bcgsc.ca 37 1 196965240 196965240 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CFHR5 NM_030787 exon6 c.C879A p.V293V TTCAGTCGAGGTG . 38.0 4.0 43.0 0.0 . 154 CHD8 57680 ucsc.edu;bcgsc.ca 37 14 21859752 21859752 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CHD8 NM_001170629 exon35 c.A6935G p.E2312G CGGGTCTCCAGGT . 53.0 4.0 54.0 0.0 . 277 CLCN7 1186 ucsc.edu;bcgsc.ca 37 16 1510868 1510868 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CLCN7 NM_001287 exon5 c.G433T p.D145Y CGATGTCAATGAA . 38.0 4.0 56.0 1.0 . 92 CLIP2 7461 ucsc.edu;bcgsc.ca 37 7 73753180 73753180 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CLIP2 NM_032421 exon3 c.C524A p.T175K CGGGCACGGCCAC . 24.0 4.0 28.0 0.0 . 93 COASY 80347 ucsc.edu;bcgsc.ca 37 17 40717936 40717936 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . COASY NM_001042532 exon11 c.T1732C p.W578R AAAGCCTGGGCCC . 38.0 4.0 51.0 1.0 . 115 COL15A1 1306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 101778304 101778304 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . COL15A1 NM_001855 exon11 c.C1550T p.P517L AGGAGCCCCTCAT . 51.0 30.0 34.0 0.0 . 96 COL22A1 169044 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 139736874 139736874 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . COL22A1 NM_152888 exon25 c.G2231A p.G744E GGAGGTCCAGGCT . 25.0 11.0 19.0 0.0 . 103 CORO2B 10391 ucsc.edu;bcgsc.ca 37 15 68937510 68937510 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CORO2B NM_006091 exon2 c.T27C p.R9R CTGGCGTCCGCAA . 43.0 5.0 39.0 0.0 . 158 COX15 1355 ucsc.edu;bcgsc.ca 37 10 101487248 101487248 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e COX15,NS,carcinoma,-2 COX15 NM_004376 exon3 c.G345T p.E115D CCATTCCTCTTGG . 38.0 4.0 61.0 0.0 . 227 CTSS 1520 broad.mit.edu;bcgsc.ca 37 1 150722588 150722588 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CTSS NM_004079 exon6 c.A687G p.E229E AGGAAGTTCAGTG . 75.0 7.0 46.0 0.0 . 90 CTSZ 1522 ucsc.edu;bcgsc.ca 37 20 57570753 57570753 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CTSZ NM_001336 exon6 c.A863G p.Y288C AGGTTGTATCTGG . 63.0 5.0 72.0 0.0 . 226 CYP3A5 1577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99247719 99247721 + In_Frame_Del DEL AGG AGG - novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 AGG AGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . CYP3A5 NM_000777 exon12 c.1388_1390del p.463_464del GTTTGAAGGAGAA . 172.0 69.0 192.0 0.0 . 90 DDX41 51428 ucsc.edu;bcgsc.ca 37 5 176939387 176939387 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DDX41 NM_016222 exon15 c.G1557T p.R519R GCCAATCCGGTGT . 25.0 4.0 40.0 0.0 . 226 DEF6 50619 ucsc.edu;bcgsc.ca 37 6 35289121 35289121 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DEF6 NM_022047 exon11 c.G1830T p.G610G TGGTGGGGATGAG . 29.0 4.0 41.0 0.0 . 227 DEFA6 1671 ucsc.edu;bcgsc.ca 37 8 6782381 6782381 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DEFA6 NM_001926 exon2 c.T262C p.C88R CAGTGCAGGTCCC . 52.0 5.0 53.0 0.0 . 90 DENND4C 55667 broad.mit.edu;bcgsc.ca 37 9 19360349 19360349 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DENND4C NM_017925 exon28 c.G5121T p.Q1707H TGATCAGGTGATT . 168.0 8.0 117.0 1.0 . 92 DHODH 1723 ucsc.edu;bcgsc.ca 37 16 72045982 72045982 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DHODH NM_001361 exon2 c.G55A p.G19R CTGGGGGGAGGAG . 25.0 4.0 37.0 0.0 . 227 DHX38 9785 ucsc.edu;bcgsc.ca 37 16 72142233 72142233 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DHX38 NM_014003 exon22 c.C3072A p.S1024S TTACTCCACCATC . 40.0 6.0 68.0 0.0 . 227 DHX9 1660 ucsc.edu;bcgsc.ca 37 1 182849641 182849641 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DHX9 NM_001357 exon22 c.C2522T p.A841V TTGATGCATTAGA . 40.0 5.0 79.0 0.0 . 92 DISP2 85455 ucsc.edu;bcgsc.ca 37 15 40659780 40659780 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DISP2 NM_033510 exon8 c.G1467T p.T489T GGACACGGTGTAC . 39.0 5.0 67.0 0.0 . 92 DNAH8 1769 ucsc.edu;bcgsc.ca 37 6 38690904 38690904 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DNAH8 NM_001206927 exon2 c.C319A p.R107R TCTTCCCGGAGGT . 60.0 6.0 41.0 0.0 . 615 DNPH1 10591 ucsc.edu;bcgsc.ca 37 6 43193533 43193533 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_006443 exon4 c.G463T p.D155Y ATCGATCCAGCAG . 31.0 5.0 41.0 0.0 . . DOCK1 1793 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 129141983 129141983 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DOCK1 NM_001380 exon31 c.G3134A p.S1045N TTTCAAGTGCCAA . 56.0 6.0 94.0 0.0 . 698 DOCK5 80005 ucsc.edu;bcgsc.ca 37 8 25174644 25174644 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DOCK5 NM_024940 exon14 c.G1440A p.L480L GCTCTTGGAGGTG . 46.0 4.0 48.0 0.0 . 71 DOCK6 57572 ucsc.edu;bcgsc.ca 37 19 11346345 11346345 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DOCK6 NM_020812 exon21 c.A2483G p.H828R GGGCAGTGACCGC . 47.0 4.0 49.0 0.0 . 93 DPYSL5 56896 ucsc.edu;bcgsc.ca 37 2 27162930 27162930 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DPYSL5 NM_001253724 exon9 c.C979A p.R327R GATCACCGGCCTT . 69.0 6.0 74.0 0.0 . 92 DUSP27 92235 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167096471 167096471 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DUSP27 NM_001080426 exon5 c.C2103A p.S701S AACCTCCAACCCC . 29.0 6.0 38.0 1.0 . 71 DUSP6 1848 ucsc.edu;bcgsc.ca 37 12 89745641 89745641 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DUSP6 NM_001946 exon1 c.C176A p.P59Q ATGCCCGGGATGG . 34.0 4.0 47.0 0.0 . 846 DYNLT3 6990 ucsc.edu;bcgsc.ca 37 X 37701140 37701140 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . DYNLT3 NM_006520 exon3 c.G91T p.G31C CACCACCTAAAAC . 47.0 5.0 95.0 0.0 . 130 EFEMP1 2202 broad.mit.edu;bcgsc.ca 37 2 56104946 56104946 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . EFEMP1 NM_001039349 exon6 c.C695A p.P232Q GAGCCTGGTGTAT . 86.0 7.0 70.0 1.0 . 520 ELF5 2001 ucsc.edu;bcgsc.ca 37 11 34527177 34527177 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ELF5 NM_198381 exon2 c.A150G p.T50T CGCACCTGTCTGA . 34.0 4.0 28.0 0.0 . 227 EMC8 10328 ucsc.edu;bcgsc.ca 37 16 85832837 85832837 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_006067 exon1 c.C65A p.P22Q CAGTGCGGGTACT . 17.0 4.0 38.0 0.0 . . EML4 27436 broad.mit.edu;bcgsc.ca 37 2 42490410 42490410 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . EML4 NM_019063 exon5 c.C605A p.P202H CAACACCCAAATT . 184.0 10.0 149.0 0.0 . 3734 EPHA10 284656 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 38192825 38192825 + Missense_Mutation SNP G G A rs34409053 TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . EPHA10 NM_001099439 exon8 c.C1721T p.S574L AGGGCCGAGATGG . 44.0 21.0 45.0 0.0 G|0.991;A|0.009 1246 EPS8 2059 broad.mit.edu;bcgsc.ca 37 12 15784587 15784587 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . EPS8 NM_004447 exon18 c.G1833T p.M611I ATACTCCATCCTT . 81.0 6.0 84.0 0.0 . 94 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212615384 212615384 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ERBB4 NM_001042599 exon5 c.C602A p.T201K TTTTCTGTGGGTC . 51.0 24.0 32.0 0.0 . 1461 ESR2 2100 ucsc.edu;bcgsc.ca 37 14 64749351 64749351 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ESR2 NM_001214902 exon1 c.C353A p.P118H TTTACAGGTAAGG . 26.0 4.0 28.0 0.0 . 611 EXOC3L2 90332 ucsc.edu;bcgsc.ca 37 19 45716529 45716529 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . EXOC3L2 NM_138568 exon10 c.T1028C p.L343P AGTTCCAGGTCCC . 58.0 5.0 63.0 0.0 . 91 FAM124A 220108 ucsc.edu;bcgsc.ca 37 13 51855053 51855053 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FAM124A NM_145019 exon5 c.C1410T p.P470P TGCACCCAGTAGG . 31.0 4.0 32.0 0.0 . 90 FAT3 120114 ucsc.edu;bcgsc.ca 37 11 92087568 92087568 + Missense_Mutation SNP A A T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FAT3 NM_001008781 exon1 c.A2290T p.T764S CTATTTACAATAT . 39.0 4.0 59.0 0.0 . 73 FBN2 2201 ucsc.edu;bcgsc.ca 37 5 127712541 127712541 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FBN2 NM_001999 exon14 c.G1855T p.D619Y ATTCATCATGATC . 46.0 4.0 37.0 0.0 . 146 FBN3 84467 ucsc.edu;bcgsc.ca 37 19 8154496 8154496 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FBN3 NM_032447 exon50 c.C6309A p.T2103T TCCATCGGTGTTG . 41.0 4.0 52.0 0.0 . 100 FERMT1 55612 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 6096555 6096555 + Missense_Mutation SNP C C A rs184921922 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FERMT1 NM_017671 exon3 c.G288T p.M96I GCGCAGCATTTTA . 57.0 10.0 47.0 0.0 C|0.999;T|0.001 495 FHOD3 80206 ucsc.edu;bcgsc.ca 37 18 34289290 34289290 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FHOD3 NM_025135 exon15 c.G1944A p.S648S CGTCTCGTCCTCC . 47.0 4.0 72.0 0.0 . 139 FICD 11153 ucsc.edu;bcgsc.ca 37 12 108912413 108912413 + Missense_Mutation SNP C C A rs139799946 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FICD NM_007076 exon3 c.C538A p.R180S GTCAACCGCGATC . 43.0 4.0 57.0 0.0 C|1.000;T|0.000 68 FLNA 2316 ucsc.edu;bcgsc.ca 37 X 153592415 153592415 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FLNA NM_001456 exon15 c.T2255C p.V752A ATGCTGACGCCTC . 31.0 4.0 45.0 0.0 . 599 FMNL2 114793 ucsc.edu;bcgsc.ca 37 2 153475551 153475551 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FMNL2 NM_052905 exon14 c.G1506A p.L502L CACATTGTCCATG . 47.0 4.0 48.0 0.0 . 516 FSCN1 6624 ucsc.edu;bcgsc.ca 37 7 5643635 5643635 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . FSCN1 NM_003088 exon4 c.T1253C p.F418S TGGAGTTCAACGA . 33.0 4.0 27.0 0.0 . 91 GABRB2 2561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 160972296 160972296 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GABRB2 NM_021911 exon4 c.C174T p.P58P CACGGGGGGACCT . 60.0 26.0 53.0 0.0 . 91 GIMAP7 168537 ucsc.edu;bcgsc.ca 37 7 150217195 150217195 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GIMAP7 NM_153236 exon2 c.A133G p.K45E GTTACCAAGAACT . 44.0 4.0 34.0 0.0 . 228 GJA1 2697 broad.mit.edu;bcgsc.ca 37 6 121768405 121768405 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GJA1 NM_000165 exon2 c.G412T p.G138C AAGTACGGTATTG . 109.0 9.0 125.0 1.0 . 92 GLYR1 84656 ucsc.edu;bcgsc.ca 37 16 4861199 4861199 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GLYR1 NM_032569 exon15 c.C1559A p.P520Q GGAGTCGGATGGT . 49.0 4.0 61.0 0.0 . 90 GMPPA 29926 ucsc.edu;bcgsc.ca 37 2 220371496 220371496 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GMPPA NM_205847 exon13 c.C1239A p.S413R CCGAAGCTTCACC . 22.0 6.0 36.0 0.0 . 90 GORASP1 64689 ucsc.edu;bcgsc.ca 37 3 39140363 39140363 + Missense_Mutation SNP A A G rs140610726 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GORASP1 NM_031899 exon8 c.T938C p.I313T AGAGAAATTCCCG . 47.0 4.0 74.0 0.0 A|0.999;C|0.000 92 GUCA1B 2979 ucsc.edu;bcgsc.ca 37 6 42152641 42152641 + Missense_Mutation SNP C C T rs141880594 TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GUCA1B NM_002098 exon4 c.G515A p.R172Q TTGTCCCGACGGG . 32.0 4.0 41.0 1.0 C|1.000;T|0.000 92 GUCY2C 2984 ucsc.edu;bcgsc.ca 37 12 14827660 14827660 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . GUCY2C NM_004963 exon8 c.G983A p.G328E AGGATTCCATTCA . 47.0 4.0 45.0 0.0 . 338 HADHB 3032 ucsc.edu;bcgsc.ca 37 2 26502181 26502181 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HADHB NM_000183 exon9 c.C809A p.P270Q AAGTACCAGGTGA . 32.0 4.0 30.0 0.0 . 154 HCRTR1 3061 ucsc.edu;bcgsc.ca 37 1 32092400 32092400 + Missense_Mutation SNP G G T rs202193411 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HCRTR1 NM_001525 exon9 c.G1097T p.R366L AATTCCGGGAGCA . 42.0 4.0 49.0 1.0 G|0.999;A|0.000 523 HIPK3 10114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 33358704 33358704 + Missense_Mutation SNP A A T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HIPK3 NM_001048200 exon4 c.A1305T p.K435N TTGCAAAGAAACA . 72.0 33.0 57.0 0.0 . 336 HIPK3 10114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 33358706 33358706 + Missense_Mutation SNP A A C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HIPK3 NM_001048200 exon4 c.A1307C p.E436A GCAAAGAAACAGA . 71.0 32.0 56.0 0.0 . 336 HK1 3098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71148962 71148962 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HK1 NM_033498 exon17 c.C1957T p.L653L TTTGACCTGGACG . 57.0 46.0 162.0 0.0 . 252 HM13 81502 ucsc.edu;bcgsc.ca 37 20 30137135 30137135 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HM13 NM_178581 exon6 c.G666T p.W222C CTTCTGGGTGAGT . 33.0 4.0 31.0 0.0 . 153 HYAL1 3373 ucsc.edu;bcgsc.ca 37 3 50340219 50340219 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HYAL1 NM_033159 exon2 c.G169T p.D57Y CCACATCGAAGAC . 44.0 4.0 61.0 0.0 . 278 HYDIN 54768 broad.mit.edu;bcgsc.ca 37 16 70841965 70841965 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . HYDIN NM_001270974 exon86 c.A14884G p.T4962A AGTCGGTCTGAAA . 28.0 6.0 56.0 0.0 . 92 IL16 3603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81589305 81589305 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . IL16 NM_001172128 exon13 c.G1939A p.E647K CCACAGGAAGACA . 46.0 22.0 65.0 0.0 . 653 ITGA8 8516 ucsc.edu;bcgsc.ca 37 10 15658547 15658547 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ITGA8 NM_003638 exon14 c.G1411T p.G471C ATGCACCCACAAT . 52.0 5.0 50.0 0.0 . 230 ITGB7 3695 ucsc.edu;bcgsc.ca 37 12 53589937 53589937 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ITGB7 NM_000889 exon7 c.C863T p.S288L TCGTCTGAAGTGA . 31.0 4.0 46.0 1.0 . 231 KANSL1 284058 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 44249095 44249095 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_001193466 exon2 c.A415G p.R139G TGGTTCTAAGATT . 38.0 10.0 34.0 0.0 . . KBTBD12 166348 ucsc.edu;bcgsc.ca 37 3 127682104 127682104 + Missense_Mutation SNP C C A rs149769275 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KBTBD12 NM_207335 exon4 c.C1565A p.P522Q ACAACCCAGATGG . 48.0 4.0 42.0 0.0 C|1.000;T|0.000 23 KCNMA1 3778 ucsc.edu;bcgsc.ca 37 10 79010979 79010979 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KCNMA1 NM_002247 exon3 c.T576C p.L192L TATTACAAGTGCA . 33.0 6.0 54.0 0.0 . 93 KCNU1 157855 ucsc.edu;bcgsc.ca 37 8 36763242 36763242 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KCNU1 NM_001031836 exon20 c.G2026A p.V676I CATGATGTAGAAC . 36.0 4.0 34.0 0.0 . 23 KCNU1 157855 ucsc.edu;bcgsc.ca 37 8 36776402 36776402 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KCNU1 NM_001031836 exon23 c.C2583A p.I861I CCCTATCCTTACT . 44.0 5.0 37.0 0.0 . 23 KIAA0317 9870 ucsc.edu;bcgsc.ca 37 14 75139644 75139644 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KIAA0317 NM_001039479 exon11 c.A1312G p.T438A GAAAGGTCTCAGA . 52.0 4.0 46.0 0.0 . 525 KIAA1211L 343990 ucsc.edu;bcgsc.ca 37 2 99443572 99443572 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_207362 exon6 c.A601G p.N201D GGCTGTTGTCTGA . 34.0 4.0 46.0 0.0 . . KIAA1804 0 ucsc.edu;bcgsc.ca 37 1 233489583 233489583 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KIAA1804 NM_032435 exon3 c.C1017A p.T339T GCTCACCGGAGAA . 54.0 5.0 83.0 0.0 . 523 KIAA1958 158405 ucsc.edu;bcgsc.ca 37 9 115337283 115337283 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KIAA1958 NM_133465 exon2 c.T923C p.M308T TGGCCATGCAAAT . 28.0 4.0 43.0 0.0 . 91 KIF20B 9585 ucsc.edu;bcgsc.ca 37 10 91469127 91469127 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KIF20B NM_016195 exon4 c.A260G p.Q87R ATTCACAGACTGT . 42.0 4.0 87.0 0.0 . 93 KIF20B 9585 ucsc.edu;bcgsc.ca 37 10 91469218 91469218 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KIF20B NM_016195 exon4 c.G351T p.K117N TTCCAAGGTAAAA . 42.0 4.0 70.0 0.0 . 93 KRT76 51350 ucsc.edu;bcgsc.ca 37 12 53169279 53169279 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . KRT76 NM_015848 exon2 c.C708A p.S236S GATGTAGGATTCA . 49.0 5.0 53.0 0.0 . 154 LAS1L 81887 ucsc.edu;bcgsc.ca 37 X 64744886 64744886 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LAS1L NM_031206 exon8 c.C1001A p.P334H AATGTGGGGACAA . 37.0 4.0 71.0 0.0 . 196 LINGO3 645191 ucsc.edu;bcgsc.ca 37 19 2290770 2290770 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_001101391 exon2 c.A1006G p.S336G AGGTGCTCTCCTC . 47.0 5.0 47.0 0.0 . . LONRF3 79836 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118148215 118148215 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LONRF3 NM_001031855 exon10 c.G2020A p.V674I AACTGTGTCTATC . 127.0 60.0 89.0 0.0 . 289 LRP1 4035 ucsc.edu;bcgsc.ca 37 12 57548458 57548458 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LRP1 NM_002332 exon8 c.C1201A p.R401S AAGGGCCGCCAGA . 30.0 4.0 42.0 0.0 . 596 LRRC10 376132 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 70004150 70004150 + Missense_Mutation SNP G G T rs201257055 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LRRC10 NM_201550 exon1 c.C469A p.R157S GCAAACGCAGGGC . 43.0 18.0 35.0 1.0 G|0.999;A|0.001 514 LRRC45 201255 ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79984801 79984801 + Missense_Mutation SNP C C T rs202017922 TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LRRC45 NM_144999 exon6 c.C688T p.R230W CAGGACCGGCTCA . 31.0 8.0 24.0 0.0 C|0.993;T|0.007 91 LTBP3 4054 ucsc.edu;bcgsc.ca 37 11 65314942 65314942 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LTBP3 NM_001130144 exon14 c.G2075T p.R692L TTGAGCCGGTAGC . 51.0 5.0 37.0 0.0 . 91 LZIC 84328 ucsc.edu;bcgsc.ca 37 1 9992006 9992006 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . LZIC NM_032368 exon6 c.T457C p.L153L CTGACAAGAAGGC . 43.0 4.0 38.0 0.0 . 90 MAEA 10296 ucsc.edu;bcgsc.ca 37 4 1321427 1321427 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MAEA NM_001017405 exon5 c.T592C p.F198L CTGGAGTTCAGCC . 21.0 4.0 32.0 0.0 . 91 MAGI2 9863 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 77649287 77649287 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MAGI2 NM_012301 exon22 c.C3713A p.P1238H GGGGCGGGTTCGT . 16.0 6.0 26.0 0.0 . 461 MAN2B2 23324 ucsc.edu;bcgsc.ca 37 4 6611693 6611693 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MAN2B2 NM_015274 exon13 c.C2175A p.S725R AAACAGCCAGCAG . 36.0 4.0 98.0 0.0 . 92 MAP1A 4130 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 43816465 43816465 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MAP1A NM_002373 exon4 c.T2794C p.L932L AAAGGCTTGTCTG . 30.0 7.0 36.0 0.0 . 141 MCHR1 2847 ucsc.edu;bcgsc.ca 37 22 41077417 41077417 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MCHR1 NM_005297 exon2 c.A754G p.R252G TATGCCAGACTCA . 38.0 4.0 53.0 0.0 . 90 MEF2A 4205 ucsc.edu;bcgsc.ca 37 15 100230447 100230447 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MEF2A NM_005587 exon8 c.G678A p.G226G CCCAGGGAATGGA . 31.0 4.0 35.0 0.0 . 455 METTL1 4234 ucsc.edu;bcgsc.ca 37 12 58163641 58163641 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . METTL1 NM_005371 exon3 c.G373T p.A125S GAGCTGCGCGTAG . 45.0 4.0 68.0 0.0 . 492 MEX3B 84206 ucsc.edu;bcgsc.ca 37 15 82336703 82336703 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MEX3B NM_032246 exon2 c.C508A p.R170S CCACGCGGTAGGG . 27.0 4.0 33.0 0.0 . 226 MICAL1 64780 ucsc.edu;bcgsc.ca 37 6 109771587 109771587 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MICAL1 NM_022765 exon8 c.G1107A p.M369I CCGCATCATGCTC . 41.0 4.0 43.0 0.0 . 154 MIEN1 84299 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 37886014 37886014 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_032339 exon3 c.G188A p.G63D AAGGCACCTGGTA . 32.0 8.0 35.0 0.0 . . MIR888 100126306 broad.mit.edu;ucsc.edu;mdanderson.org 37 X 145076315 145076315 + RNA SNP A A C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . . . . . TCCTTCACCCAAA . 54.0 28.0 78.0 1.0 . . MLL4 8085 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36216120 36216120 + Splice_Site SNP G G C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MLL4 NM_014727 exon11 c.3529-1G>C . CCCCCAGGAGGAT . 30.0 15.0 30.0 0.0 . 697 MPHOSPH9 10198 ucsc.edu;bcgsc.ca 37 12 123647656 123647656 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MPHOSPH9 NM_022782 exon16 c.A2478G p.P826P AGTCACTGGTGTT . 32.0 4.0 30.0 0.0 . 514 MPHOSPH9 10198 ucsc.edu;bcgsc.ca 37 12 123699320 123699320 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MPHOSPH9 NM_022782 exon3 c.C602A p.P201Q GCATTTGGAGTTT . 42.0 4.0 46.0 0.0 . 514 MUC16 94025 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9006378 9006378 + Missense_Mutation SNP G G C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MUC16 NM_024690 exon45 c.C39640G p.P13214A ACAGAGGGCCAAC . 42.0 19.0 48.0 0.0 . 566 MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27442787 27442787 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MYO18A NM_078471 exon12 c.G2122A p.E708K ACAGCTCCTCCAG . 34.0 15.0 54.0 0.0 . 22 MYO1D 4642 ucsc.edu;bcgsc.ca 37 17 31075959 31075959 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MYO1D NM_015194 exon12 c.T1533C p.D511D CACTACATCGCCT . 55.0 5.0 49.0 0.0 . 137 MYO9B 4650 ucsc.edu;bcgsc.ca 37 19 17317097 17317097 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MYO9B NM_001130065 exon33 c.C5298T p.A1766A CCACGCCATCACA . 33.0 5.0 60.0 0.0 . 67 MYOF 26509 ucsc.edu;bcgsc.ca 37 10 95191205 95191205 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . MYOF NM_133337 exon4 c.A305G p.K102R ATCAGCTTGTACG . 33.0 4.0 65.0 0.0 . 93 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 35731313 35731313 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NBEA NM_015678 exon21 c.A2750G p.Y917C TGGTCTACAATAT . 116.0 109.0 111.0 1.0 . 144 NISCH 11188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52513791 52513791 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NISCH NM_001276293 exon12 c.A1329G p.T443T GACCACAGAGAAG . 91.0 42.0 74.0 0.0 . 93 NLGN3 54413 ucsc.edu;bcgsc.ca 37 X 70389119 70389119 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NLGN3 NM_181303 exon8 c.G1719A p.P573P CAAGCCGGTCCCC . 37.0 4.0 40.0 0.0 . 131 NLRP5 126206 broad.mit.edu;bcgsc.ca 37 19 56545050 56545050 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NLRP5 NM_153447 exon9 c.C2590A p.P864T AAACACCCAAAAT . 195.0 11.0 175.0 0.0 . 162 NOS2 4843 ucsc.edu;bcgsc.ca 37 17 26099445 26099445 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NOS2 NM_000625 exon14 c.G1593T p.K531N CATTGTCTTGCGC . 46.0 4.0 58.0 0.0 . 156 NPAS4 266743 ucsc.edu;bcgsc.ca 37 11 66190697 66190697 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NPAS4 NM_178864 exon5 c.C802A p.R268S CACTACCGCCTGT . 41.0 4.0 42.0 0.0 . 90 NPAS4 266743 ucsc.edu;bcgsc.ca 37 11 66191182 66191182 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NPAS4 NM_178864 exon6 c.C942A p.I314I CCCAATCAGGTAA . 40.0 4.0 39.0 1.0 . 90 NPHP1 4867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 110959033 110959033 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NPHP1 NM_207181 exon2 c.T108C p.A36A TTCTAGAGCTTCT . 93.0 42.0 68.0 0.0 . 92 NR3C2 4306 ucsc.edu;bcgsc.ca 37 4 149181131 149181131 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NR3C2 NM_001166104 exon3 c.A1896G p.E632E TTTACCTTCCACT . 57.0 5.0 49.0 0.0 . 154 NUP133 55746 ucsc.edu;bcgsc.ca 37 1 229580661 229580661 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . NUP133 NM_018230 exon25 c.G3334T p.G1112C ACTTACCATCTTT . 34.0 4.0 49.0 0.0 . 271 NYAP1 222950 ucsc.edu;bcgsc.ca 37 7 100085902 100085902 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_173564 exon4 c.T558C p.P186P CTCTCCTCGAGGG . 50.0 4.0 48.0 0.0 . . OCIAD1 54940 broad.mit.edu;bcgsc.ca 37 4 48862751 48862751 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . OCIAD1 NM_001168254 exon9 c.A725G p.N242S AAGTAAACAAGTA . 69.0 5.0 118.0 0.0 . 68 OVCH1 341350 broad.mit.edu;bcgsc.ca 37 12 29628067 29628067 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . OVCH1 NM_183378 exon14 c.G1527T p.T509T TATCACCGTCATG . 184.0 8.0 135.0 0.0 . 210 PARD3B 117583 ucsc.edu;bcgsc.ca 37 2 205989190 205989190 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PARD3B NM_205863 exon9 c.G1305T p.E435D TTTGGAGGTAAGA . 43.0 4.0 40.0 0.0 . 140 PASK 23178 ucsc.edu;bcgsc.ca 37 2 242066022 242066022 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PASK NM_015148 exon10 c.C2308T p.P770S AAGAGGGTGTCTC . 61.0 5.0 88.0 0.0 . 536 PCBP4 57060 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 51993962 51993962 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PCBP4 NM_033008 exon7 c.G465A p.V155V ATCAGGCACCCCA . 18.0 4.0 24.0 0.0 . 226 PCDHGA12 26025 ucsc.edu;bcgsc.ca 37 5 140810434 140810434 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PCDHGA12 NM_032094 exon1 c.G108T p.P36P AGTTCCGGAAGAG . 52.0 4.0 56.0 0.0 . 27 PDDC1 347862 ucsc.edu;bcgsc.ca 37 11 773565 773565 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PDDC1 NM_182612 exon4 c.T312C p.S104S GGAGCCACTGCTG . 45.0 4.0 75.0 0.0 . 90 PEX5 5830 ucsc.edu;bcgsc.ca 37 12 7343827 7343827 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PEX5 NM_001131023 exon4 c.G234T p.V78V GTTGGTGGCTGAA . 45.0 4.0 53.0 0.0 . 91 PFDN2 5202 ucsc.edu;bcgsc.ca 37 1 161071839 161071839 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PFDN2 NM_012394 exon3 c.A287G p.Q96R CTCACCTGCTCCT . 45.0 5.0 28.0 0.0 . 90 PHEX 5251 ucsc.edu;bcgsc.ca 37 X 22196426 22196426 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PHEX NM_000444 exon14 c.C1519A p.L507I AACGTCCTACAAA . 45.0 4.0 67.0 0.0 . 132 PI16 221476 ucsc.edu;bcgsc.ca 37 6 36926948 36926948 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PI16 NM_001199159 exon3 c.G199T p.A67S GCCTTCGCCAAGG . 38.0 4.0 47.0 0.0 . 90 PIGQ 9091 ucsc.edu;bcgsc.ca 37 16 628482 628482 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PIGQ NM_148920 exon5 c.T1046C p.L349P TCTTCCTCTACCA . 27.0 4.0 44.0 0.0 . 226 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 178916692 178916692 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PIK3CA NM_006218 exon2 c.C79A p.P27T TTACTACCAAATG . 80.0 38.0 74.0 0.0 . 27752 PIN1 5300 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9949168 9949168 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PIN1 NM_006221 exon2 c.G115T p.G39C CCCAGCGGCAACA . 46.0 17.0 55.0 0.0 . 227 PLEKHH2 130271 broad.mit.edu;bcgsc.ca 37 2 43919652 43919652 + Splice_Site SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PLEKHH2 NM_172069 exon4 c.187-1G>T . AATTTAGGTACAA . 122.0 8.0 110.0 0.0 . 92 PPEF2 5470 ucsc.edu;bcgsc.ca 37 4 76809470 76809470 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PPEF2 NM_006239 exon6 c.T429C p.A143A GTAGCGAGCATGG . 36.0 4.0 45.0 1.0 . 228 PPP2CA 5515 ucsc.edu;bcgsc.ca 37 5 133536762 133536762 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PPP2CA NM_002715 exon4 c.T490C p.F164L GACAGAAGATCTG . 41.0 4.0 33.0 0.0 . 1085 PPP2CB 5516 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 30643819 30643819 + Nonsense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PPP2CB NM_001009552 exon7 c.C862T p.Q288X CAAATTGAAGGCT . 38.0 12.0 36.0 0.0 . 658 PPP2R5C 5527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102391540 102391540 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PPP2R5C NM_001161725 exon16 c.C1599A p.D533E TCAGGACCCCCAC . 80.0 36.0 61.0 0.0 . 659 PROKR1 10887 ucsc.edu;bcgsc.ca 37 2 68882573 68882573 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PROKR1 NM_138964 exon2 c.C1047A p.T349T CGACACCGTCAAG . 48.0 5.0 60.0 0.0 . 523 PTCH2 8643 ucsc.edu;bcgsc.ca 37 1 45296615 45296615 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e PTCH2,NS,malignant_melanoma,+2 PTCH2 NM_001166292 exon6 c.A718G p.K240E GTGCCTTGTCTAG . 41.0 4.0 61.0 0.0 . 851 PTPN2 5771 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 12802149 12802149 + Missense_Mutation SNP T T G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PTPN2 NM_001207013 exon9 c.A929C p.K310T CATCGTTTCTAGG . 98.0 51.0 66.0 0.0 . 652 PTPRG 5793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 61975392 61975392 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . PTPRG NM_002841 exon3 c.T284C p.V95A CGCGTGTTGGGGA . 87.0 37.0 81.0 0.0 . 419 QSOX1 5768 ucsc.edu;bcgsc.ca 37 1 180158782 180158782 + Missense_Mutation SNP T T A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . QSOX1 NM_002826 exon9 c.T1113A p.F371L TTTCTTTAAAACT . 34.0 4.0 29.0 0.0 . 91 RAB3GAP2 25782 ucsc.edu;bcgsc.ca 37 1 220364460 220364460 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RAB3GAP2 NM_012414 exon14 c.C1437T p.S479S CTGTGTGCTCCAC . 49.0 4.0 60.0 0.0 . 90 RASGRP3 25780 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 33752434 33752434 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RASGRP3 NM_170672 exon11 c.C1038A p.A346A GAATGCCTCTCAC . 26.0 5.0 19.0 0.0 . 661 RB1 5925 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 48947605 48947606 + Frame_Shift_Ins INS - - A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RB1 NM_000321 exon12 c.1192_1193insA p.E398fs CCTTCAGAAAATC . 311.0 276.0 228.0 0.0 . 3784 RELT 84957 ucsc.edu;bcgsc.ca 37 11 73106527 73106527 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RELT NM_152222 exon11 c.G1284T p.L428L CAACCTGGTCATC . 36.0 4.0 43.0 1.0 . 228 RFPL4A 342931 broad.mit.edu;mdanderson.org 37 19 56274197 56274197 + Nonsense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RFPL4A NM_001145014 exon3 c.C520T p.R174X GTGAACCGACAGG . 268.0 46.0 233.0 0.0 . 68 RNF122 79845 ucsc.edu;bcgsc.ca 37 8 33416214 33416214 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RNF122 NM_024787 exon2 c.C101A p.P34Q TTGAGCGGAAGGT . 45.0 4.0 56.0 0.0 . 226 RSF1 51773 ucsc.edu;bcgsc.ca 37 11 77412597 77412597 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RSF1 NM_016578 exon6 c.C1677A p.T559T CGACTCGGTGGAA . 49.0 5.0 90.0 0.0 . 93 RTEL1 51750 ucsc.edu;bcgsc.ca 37 20 62311205 62311205 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . RTEL1 NM_032957 exon13 c.C1113T p.Y371Y CAGCTACATCTTT . 20.0 4.0 30.0 0.0 . 44 SARDH 1757 ucsc.edu;bcgsc.ca 37 9 136561448 136561448 + Silent SNP G G A rs35013479 byfrequency TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SARDH NM_007101 exon14 c.C1704T p.A568A CACAGCGGCGGCC . 48.0 4.0 49.0 0.0 G|0.985;A|0.015 90 SATB1 6304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 18456693 18456693 + Silent SNP T T C rs61733671 TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SATB1 NM_002971 exon5 c.A549G p.Q183Q CGACCATTGTTCG . 105.0 41.0 104.0 0.0 T|0.987;C|0.013 228 SCGB2A2 4250 broad.mit.edu;ucsc.edu 37 11 62040428 62040428 + Splice_Site SNP G G C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SCGB2A2 NM_002411 exon3 c.244-1G>C . TTTCTAGCAATTA . 34.0 16.0 17.0 0.0 . 91 SDCCAG8 10806 ucsc.edu;bcgsc.ca 37 1 243471320 243471320 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SDCCAG8 NM_006642 exon8 c.G770T p.C257F GAACTTGTGAAGA . 47.0 4.0 70.0 0.0 . 90 SDHA 6389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 240575 240575 + Missense_Mutation SNP G G T rs192818312 by1000genomes;alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SDHA NM_004168 exon11 c.G1535T p.R512L AACTGCGACTCAG . 157.0 67.0 176.0 0.0 G|0.999;A|0.001 226 SDHAF2 54949 broad.mit.edu;bcgsc.ca 37 11 61205239 61205239 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SDHAF2 NM_017841 exon2 c.A179G p.D60G GAACTGATGAATC . 76.0 6.0 62.0 0.0 . 92 SEMA3F 6405 ucsc.edu;bcgsc.ca 37 3 50211496 50211496 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SEMA3F NM_004186 exon4 c.A285G p.A95A CTGGGCAGCCTCC . 31.0 4.0 29.0 0.0 . 279 SGSM2 9905 ucsc.edu;bcgsc.ca 37 17 2276333 2276333 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SGSM2 NM_014853 exon16 c.T1875C p.L625L TCTGCTTGGCCAC . 28.0 4.0 52.0 0.0 . 68 SHISA6 388336 ucsc.edu;bcgsc.ca 37 17 11455212 11455212 + Splice_Site SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SHISA6 NM_207386 exon4 c.896-1G>T . TTTTCAGGTGATC . 43.0 4.0 47.0 0.0 . 67 SHROOM3 57619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 77357245 77357245 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SHROOM3 NM_020859 exon1 c.A40G p.T14A AGTGCCACATTAA . 88.0 42.0 109.0 0.0 . 93 SLC10A7 84068 ucsc.edu;bcgsc.ca 37 4 147204345 147204345 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLC10A7 NM_001029998 exon10 c.G846T p.L282F CTTACCCAATGTA . 49.0 5.0 41.0 0.0 . 22 SLC22A24 283238 ucsc.edu;bcgsc.ca 37 11 62848565 62848565 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_001136506 exon9 c.C1425A p.S475S CCTACCGGACACT . 46.0 4.0 35.0 0.0 . . SLC25A16 8034 ucsc.edu;bcgsc.ca 37 10 70253301 70253301 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLC25A16 NM_152707 exon5 c.C448T p.P150S CAAGAGGGTAAGT . 44.0 4.0 82.0 0.0 . 90 SLC34A1 6569 ucsc.edu;bcgsc.ca 37 5 176821189 176821189 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLC34A1 NM_003052 exon10 c.C1167A p.I389I GGTCATCAATACG . 44.0 4.0 56.0 0.0 . 91 SLC44A3 126969 ucsc.edu;bcgsc.ca 37 1 95332918 95332918 + Missense_Mutation SNP G G T rs142020864 byfrequency;alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLC44A3 NM_001114106 exon12 c.G1427T p.R476L TGTTCCGATGCTG . 55.0 6.0 58.0 0.0 G|0.999;A|0.001 91 SLC8A1 6546 ucsc.edu;bcgsc.ca 37 2 40657282 40657282 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLC8A1 NM_001252624 exon1 c.G139T p.G47C ATTCACCAGTTTC . 81.0 8.0 58.0 0.0 . 93 SLIT2 9353 ucsc.edu;bcgsc.ca 37 4 20570613 20570613 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SLIT2 NM_004787 exon29 c.C3074A p.P1025Q TTTGCCCACCTGA . 37.0 4.0 48.0 0.0 . 521 SNTB2 6645 ucsc.edu;bcgsc.ca 37 16 69279693 69279693 + Missense_Mutation SNP C C A rs200536488 alternate_allele TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SNTB2 NM_006750 exon2 c.C769A p.L257I AGAAACCTAAGCA . 28.0 4.0 51.0 0.0 C|0.999;T|0.001 90 SNX6 58533 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35072633 35072633 + Missense_Mutation SNP A A C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SNX6 NM_152233 exon6 c.T473G p.V158G AGGAACACTTCAT . 168.0 75.0 176.0 2.0 . 226 SOWAHA 134548 ucsc.edu;bcgsc.ca 37 5 132150924 132150924 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_175873 exon1 c.T1611C p.P537P GGGGCCTTTAGCT . 50.0 5.0 54.0 0.0 . . SPAG17 200162 ucsc.edu;bcgsc.ca 37 1 118727771 118727771 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SPAG17 NM_206996 exon1 c.A10G p.K4E CCTTCTTGGGTGC . 47.0 4.0 46.0 0.0 . 158 SPTA1 6708 broad.mit.edu;bcgsc.ca 37 1 158619678 158619678 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SPTA1 NM_003126 exon25 c.G3537T p.L1179L ACTGCCCAGCAGC . 178.0 14.0 89.0 1.0 . 142 SREBF1 6720 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 17716721 17716721 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SREBF1 NM_001005291 exon19 c.C3265T p.R1089C GACTGCGGTCGAG . 24.0 10.0 28.0 0.0 . 91 ST6GALNAC2 10610 ucsc.edu;bcgsc.ca 37 17 74562309 74562309 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ST6GALNAC2 NM_006456 exon9 c.C1002A p.S334S GTGGTCGGAAAAT . 65.0 6.0 46.0 0.0 . 90 STARD3NL 83930 broad.mit.edu;bcgsc.ca 37 7 38253999 38253999 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . STARD3NL NM_032016 exon3 c.G267A p.M89I GGTGATGCAGTAT . 100.0 6.0 71.0 0.0 . 91 STARD5 80765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81615246 81615246 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . STARD5 NM_181900 exon2 c.G143T p.G48V AGGTTCCCTGGAA . 74.0 43.0 69.0 0.0 . 91 SUCNR1 56670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151598552 151598552 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SUCNR1 NM_033050 exon3 c.G221T p.C74F TTCTGTGCACCCT . 162.0 59.0 142.0 0.0 . 711 SUSD5 26032 ucsc.edu;bcgsc.ca 37 3 33195198 33195198 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . SUSD5 NM_015551 exon5 c.A926G p.E309G TCCACCTCCTTTT . 42.0 5.0 56.0 0.0 . 24 TAF1 6872 broad.mit.edu;bcgsc.ca 37 X 70597452 70597452 + Splice_Site SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TAF1 NM_004606 exon6 c.775-1G>T . GTTCTAGGTGTTA . 228.0 12.0 224.0 0.0 . 900 TBC1D10B 26000 ucsc.edu;bcgsc.ca 37 16 30380803 30380803 + Silent SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_015527 exon1 c.C702A p.T234T AGCTGGGGTCACG . 22.0 5.0 32.0 0.0 . . TEX11 56159 hgsc.bcm.edu;bcgsc.ca 37 X 70053381 70053383 + In_Frame_Del DEL CAA CAA - novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 CAA CAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TEX11 NM_001003811 exon9 c.631_633del p.211_211del CCTCATCAACATA . 173.0 63.0 178.0 0.0 . 178 TFCP2L1 29842 ucsc.edu;bcgsc.ca 37 2 121995248 121995248 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TFCP2L1 NM_014553 exon10 c.T954C p.L318L GCGGTGAAGCCAC . 30.0 4.0 39.0 0.0 . 93 TFDP2 7029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 141678612 141678612 + Nonsense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TFDP2 NM_001178139 exon11 c.G955T p.G319X ACATTCCCATCCG . 60.0 26.0 68.0 0.0 . 226 TFDP2 7029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 141678613 141678613 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TFDP2 NM_001178139 exon11 c.G954T p.M318I CATTCCCATCCGC . 60.0 28.0 71.0 0.0 . 226 THSD7A 221981 broad.mit.edu;bcgsc.ca 37 7 11675947 11675947 + Missense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . THSD7A NM_015204 exon2 c.G832T p.G278W TCTTCCCGCGTCT . 140.0 7.0 101.0 0.0 . 71 TKT 7086 ucsc.edu;bcgsc.ca 37 3 53259913 53259913 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TKT NM_001258028 exon15 c.G1755T p.V585V CTCGCCCACTACT . 36.0 4.0 42.0 0.0 . 92 TMED4 222068 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44621075 44621075 + Silent SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TMED4 NM_182547 exon3 c.G360A p.R120R AGCCATCCTGGTA . 18.0 10.0 25.0 0.0 . 90 TMEM218 219854 hgsc.bcm.edu;ucsc.edu 37 11 124972140 124972140 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TMEM218 NM_001258243 exon4 c.G103A p.G35R CCATCCCGCGGGG . 11.0 11.0 25.0 0.0 . 68 TNMD 64102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 99854571 99854571 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TNMD NM_022144 exon7 c.C811A p.R271R TGCCGTCGAGGCA . 61.0 18.0 81.0 0.0 . 130 TNPO1 3842 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 72189531 72189532 + Splice_Site INS - - T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TNPO1 NM_002270 exon18 c.2143+1->T . GTATAGGTATGAA . 74.0 35.0 81.0 0.0 . 228 TNRC6B 23112 ucsc.edu;bcgsc.ca 37 22 40660919 40660919 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TNRC6B NM_001162501 exon5 c.A685G p.S229G GAGAAGAGCACTC . 28.0 4.0 39.0 0.0 . 22 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e TP53,mouth,carcinoma,0 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 51.0 39.0 83.0 0.0 C|1.000;|0.000 70225 TRAM2 9697 ucsc.edu;bcgsc.ca 37 6 52373071 52373071 + Silent SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TRAM2 NM_012288 exon6 c.G516T p.L172L TGCGTGCAGCCAG . 32.0 4.0 23.0 0.0 . 90 TRIM22 10346 ucsc.edu;bcgsc.ca 37 11 5718574 5718574 + Splice_Site SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TRIM22 NM_001199573 exon3 c.519+1G>A . TGGAAGGCAGGAG . 50.0 5.0 39.0 0.0 . 90 TRPC6 7225 ucsc.edu;bcgsc.ca 37 11 101342954 101342954 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TRPC6 NM_004621 exon8 c.C2119A p.L707I CATAAAGAACGTA . 30.0 4.0 57.0 0.0 . 93 TRPM2 7226 ucsc.edu;bcgsc.ca 37 21 45837840 45837840 + Silent SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TRPM2 NM_003307 exon21 c.G3177A p.T1059T GCACACGGACCAG . 19.0 4.0 28.0 0.0 . 92 TULP3 7289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 3048495 3048495 + Missense_Mutation SNP A A T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TULP3 NM_003324 exon11 c.A1214T p.Q405L TCATGCAGTTTGG . 124.0 51.0 150.0 0.0 . 226 TULP4 56995 bcgsc.ca;mdanderson.org 37 6 158923495 158923495 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . TULP4 NM_020245 exon13 c.G2800T p.V934F AAGAAGGTCCCTC . 36.0 17.0 43.0 2.0 . 91 UBN1 29855 ucsc.edu;bcgsc.ca 37 16 4925031 4925031 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . UBN1 NM_001079514 exon15 c.A2620G p.K874E TCTCACAAGACCC . 20.0 4.0 17.0 0.0 . 92 USH2A 7399 ucsc.edu;bcgsc.ca 37 1 216462747 216462747 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . USH2A NM_007123 exon11 c.A1846G p.N616D CACAGTTCCTTCC . 38.0 4.0 57.0 0.0 . 115 VPS51 738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64878964 64878964 + Missense_Mutation SNP C C G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . . NM_013265 exon10 c.C2254G p.L752V CACTTGCTGCTGG . 73.0 28.0 83.0 0.0 . . VWA3A 146177 ucsc.edu;bcgsc.ca 37 16 22132937 22132937 + Missense_Mutation SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . VWA3A NM_173615 exon14 c.A1355G p.E452G TCCATGAGGTAAT . 47.0 4.0 51.0 0.0 . 1 VWA5A 4013 ucsc.edu;bcgsc.ca 37 11 124013226 124013226 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . VWA5A NM_014622 exon16 c.G2101T p.A701S GATCTAGCCAAGA . 42.0 4.0 68.0 0.0 . 92 VWF 7450 broad.mit.edu;bcgsc.ca 37 12 6161738 6161738 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . VWF NM_000552 exon16 c.A2157G p.E719E GATGTCTTCTGGC . 66.0 5.0 115.0 0.0 . 163 WDR78 79819 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 67292730 67292730 + Splice_Site SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . WDR78 NM_024763 exon16 c.2113-1G>A . TGGACCCTAGAAA . 183.0 83.0 159.0 1.0 . 92 WDR90 197335 broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 712780 712780 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . WDR90 NM_145294 exon34 c.C4247T p.T1416M CGGGCACGCTGTG . 31.0 11.0 49.0 0.0 . 92 XPNPEP2 7512 ucsc.edu;bcgsc.ca 37 X 128896688 128896688 + Missense_Mutation SNP A A T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . XPNPEP2 NM_003399 exon19 c.A1682T p.D561V ATAAGGATGGAGA . 33.0 4.0 44.0 0.0 . 130 ZBTB40 9923 ucsc.edu;bcgsc.ca 37 1 22839460 22839460 + Silent SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZBTB40 NM_001083621 exon13 c.T2505C p.P835P GAAGCCTTTCTCC . 40.0 5.0 24.0 0.0 . 91 ZDHHC16 84287 broad.mit.edu;bcgsc.ca 37 10 99213323 99213323 + Missense_Mutation SNP G G T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZDHHC16 NM_198043 exon6 c.G593T p.R198L ACCATCGGTACTT . 97.0 8.0 194.0 0.0 . 91 ZFP36 7538 broad.mit.edu;ucsc.edu;mdanderson.org 37 19 39899108 39899108 + Nonsense_Mutation SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZFP36 NM_003407 exon2 c.C768A p.C256X CTGTTGCCCCTCC . 67.0 24.0 71.0 1.0 . 227 ZFYVE1 53349 ucsc.edu;bcgsc.ca 37 14 73460001 73460001 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZFYVE1 NM_021260 exon4 c.T1053C p.P351P GGCTTCAGGGAAA . 41.0 4.0 55.0 0.0 . 91 ZNF518A 9849 broad.mit.edu;ucsc.edu 37 10 97918109 97918109 + RNA SNP C C A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZNF518A . . . . AACAACCAATTAG . 53.0 7.0 68.0 0.0 . 23 ZNF546 339327 ucsc.edu;bcgsc.ca 37 19 40520384 40520384 + Missense_Mutation SNP C C T novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZNF546 NM_178544 exon7 c.C1207T p.H403Y GTTCAACATCAGA . 43.0 4.0 45.0 0.0 . 155 ZNF638 27332 ucsc.edu;bcgsc.ca 37 2 71577282 71577282 + Missense_Mutation SNP G G A novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZNF638 NM_014497 exon2 c.G1198A p.D400N CATGCTGATGCCC . 37.0 4.0 48.0 0.0 . 94 ZNF804B 219578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 88963115 88963115 + Silent SNP A A G novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZNF804B NM_181646 exon4 c.A819G p.T273T AGATACACACCTT . 109.0 54.0 119.0 0.0 . 101 ZRANB3 84083 ucsc.edu;bcgsc.ca 37 2 136029433 136029433 + Missense_Mutation SNP T T C novel TCGA-G3-A25U-01A-11D-A16V-10 TCGA-G3-A25U-10A-01D-A16V-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 656f2a16-cd8a-4255-b6ff-703f560a74a7 c178796c-e0ab-403c-9ab1-95aa12c72f0e . ZRANB3 NM_032143 exon10 c.A1111G p.S371G AAACACTTCCATC . 37.0 4.0 31.0 0.0 . 658