Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215843664	215843664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA12	NM_173076	exon32	c.G4841A	p.G1614E	AGCTCTCCCCCAA	.	128.0	22.0	75.0	0.0	.	99
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48443391	48443391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA13	NM_152701	exon39	c.G11985T	p.R3995S	GTCGAGGACCGTG	.	50.0	14.0	48.0	0.0	.	521
ABCA7	10347	ucsc.edu;bcgsc.ca	37	19	1058628	1058628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA7	NM_019112	exon38	c.T5161C	p.F1721L	AGGCAGTTCCAGT	.	41.0	5.0	60.0	0.0	.	98
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	87214868	87214868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCB1	NM_000927	exon5	c.246delA	p.A82fs	ATTTCCTGCATTT	.	40.0	11.0	46.0	0.0	.	582
ABCC9	10060	ucsc.edu;bcgsc.ca	37	12	21991070	21991070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCC9	NM_005691	exon28	c.C3508A	p.P1170T	GCAGAGGGAGCTG	.	38.0	4.0	48.0	0.0	.	96
ACSF3	197322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89167289	89167289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ACSF3	NM_174917	exon3	c.C200T	p.T67M	GCCACACGTACAG	.	13.0	6.0	45.0	0.0	.	68
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77329000	77329000	+	Silent	SNP	T	T	C	rs142130362		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAMTS18	NM_199355	exon19	c.A2826G	p.T942T	GCTGCATGTACTC	.	29.0	4.0	38.0	0.0	T|1.000;C|0.000	1036
ADGB	79747	ucsc.edu;bcgsc.ca	37	6	147006934	147006934	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_024694	exon10	c.T1281C	p.F427F	TTTGTTTGAAAAC	.	64.0	6.0	27.0	0.0	.	.
AGBL1	123624	ucsc.edu;bcgsc.ca	37	15	86838529	86838529	+	Missense_Mutation	SNP	T	T	C	rs190282686	by1000genomes	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_152336	exon16	c.T2126C	p.V709A	AAGAGGTCTACTT	.	37.0	4.0	30.0	1.0	T|0.999;C|0.000	.
AP3B2	8120	ucsc.edu;bcgsc.ca	37	15	83331891	83331891	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AP3B2	NM_004644	exon21	c.C2535A	p.T845T	TACCAGGGTGGAG	.	31.0	4.0	48.0	0.0	.	94
ARVCF	421	ucsc.edu;bcgsc.ca	37	22	19967280	19967280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARVCF	NM_001670	exon6	c.G1382A	p.R461H	AGCTCACGGACCT	.	44.0	5.0	46.0	0.0	.	91
ASIC3	9311	ucsc.edu;mdanderson.org	37	7	150746506	150746506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_020322	exon1	c.G534A	p.T178T	CACCACGGTGAGC	.	17.0	8.0	14.0	0.0	.	.
ATP1A3	478	broad.mit.edu;mdanderson.org	37	19	42489335	42489335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1A3	NM_001256214	exon8	c.C767T	p.T256M	CGAGCCGTGCCTG	.	23.0	8.0	26.0	1.0	.	92
ATP1B4	23439	ucsc.edu;bcgsc.ca	37	X	119509404	119509404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1B4	NM_001142447	exon5	c.T740C	p.I247T	CCTGCATCCTTCT	.	41.0	4.0	30.0	0.0	.	131
BRAP	8315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112093435	112093435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRAP	NM_006768	exon10	c.C1246G	p.L416V	ATTCCAGCTGGCT	.	105.0	38.0	78.0	0.0	.	710
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57512438	57512438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001145101	exon3	c.C1307A	p.S436Y	TCTGGGGAGTGGC	.	52.0	26.0	71.0	0.0	.	.
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58855185	58855185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C3orf67	NM_198463	exon9	c.G509A	p.R170Q	CATGATCGGTTAT	.	154.0	46.0	100.0	0.0	.	68
CADPS	8618	broad.mit.edu;bcgsc.ca	37	3	62578422	62578422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CADPS	NM_003716	exon7	c.T1327G	p.W443G	TGCCCCAGCTGCA	.	13.0	5.0	24.0	0.0	.	281
CAPSL	133690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35910562	35910562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CAPSL	NM_144647	exon3	c.T221A	p.V74D	TCCATGACCACAG	.	115.0	36.0	94.0	0.0	.	91
CASR	846	ucsc.edu;bcgsc.ca	37	3	122003982	122003982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASR	NM_001178065	exon7	c.A3211G	p.S1071G	TCACAGAGCTTTG	.	44.0	4.0	34.0	0.0	.	97
CCDC6	8030	ucsc.edu;bcgsc.ca	37	10	61554242	61554242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC6	NM_005436	exon8	c.C1219A	p.H407N	TACCATGGGATGT	.	41.0	4.0	35.0	0.0	.	686
CDH8	1006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61859057	61859057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDH8	NM_001796	exon5	c.A694G	p.M232V	TGTCCATGTTGGG	.	79.0	25.0	45.0	0.0	.	161
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180064893	180064893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CEP350	NM_014810	exon35	c.T8747C	p.V2916A	TGGCAGTCCCCCA	.	140.0	31.0	73.0	0.0	.	26
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6196807	6196807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD5	NM_015557	exon16	c.T2555A	p.L852H	TTCTTGAGGCGGT	.	53.0	17.0	80.0	0.0	.	719
CPEB4	80315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173382915	173382915	+	Silent	SNP	G	G	T	rs199562365	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPEB4	NM_030627	exon10	c.G1965T	p.V655V	GCAGGTGGAAGTT	.	39.0	6.0	27.0	0.0	G|0.999;A|0.001	90
CPT1A	1374	ucsc.edu;bcgsc.ca	37	11	68525193	68525193	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPT1A	NM_001876	exon19	c.T2241C	p.S747S	GCGATGAGAATCC	.	42.0	4.0	30.0	0.0	.	149
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41275047	41275047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTNNB1	NM_001098209	exon9	c.C1213T	p.L405F	GGGACTCTTGTTC	.	63.0	18.0	56.0	0.0	.	24361
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43172823	43172823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CUL9	NM_015089	exon23	c.G4602T	p.L1534F	CGCCTTGCTGCAG	.	25.0	5.0	37.0	0.0	.	529
DDX42	11325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61890756	61890756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX42	NM_203499	exon15	c.G1844T	p.R615L	TGGTCCGGAACTT	.	85.0	23.0	87.0	0.0	.	230
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	169938117	169938117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DHRS9	NM_005771	exon5	c.T26A	p.L9Q	GCCTCCTAATCCT	.	50.0	11.0	31.0	0.0	.	90
DNTT	1791	ucsc.edu;bcgsc.ca	37	10	98064323	98064323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNTT	NM_001017520	exon1	c.G69T	p.M23I	CTTGATGGCCTCC	.	31.0	4.0	27.0	0.0	.	228
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134018356	134018356	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DPYSL4	NM_006426	exon14	c.T1641C	p.D547D	GGCTGATGACCAC	.	68.0	29.0	86.0	0.0	.	514
EHMT1	79813	ucsc.edu;bcgsc.ca	37	9	140693366	140693366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EHMT1	NM_024757	exon17	c.G2607T	p.Q869H	CTGTCAGGTACAG	.	23.0	4.0	25.0	0.0	.	154
ENGASE	64772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77077980	77077980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ENGASE	NM_001042573	exon7	c.G873T	p.R291S	TCTCAGGGTCTTC	.	116.0	37.0	99.0	1.0	.	91
EPB41L3	23136	ucsc.edu;bcgsc.ca	37	18	5397364	5397364	+	Missense_Mutation	SNP	G	G	T	rs140230336	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPB41L3	NM_012307	exon18	c.C2534A	p.P845Q	CTAAGCGGCAGGT	.	50.0	4.0	44.0	0.0	G|0.998;A|0.002	95
EPHA3	2042	ucsc.edu;bcgsc.ca	37	3	89391167	89391167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA3	NM_005233	exon5	c.C1233A	p.A411A	TGATGCCGTTAAT	.	53.0	5.0	42.0	0.0	.	1500
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97202883	97202883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA6	NM_001080448	exon10	c.T2180C	p.I727T	TTCGTATTGAGAG	.	93.0	39.0	85.0	0.0	.	1561
ERGIC2	51290	ucsc.edu;bcgsc.ca	37	12	29509352	29509352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ERGIC2	NM_016570	exon8	c.A535G	p.N179D	CTTTATTGACATA	.	43.0	4.0	37.0	0.0	.	91
ESRP1	54845	ucsc.edu;bcgsc.ca	37	8	95654259	95654259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ESRP1	NM_001122827	exon2	c.A208G	p.I70V	ACTAAAATAGACG	.	42.0	4.0	38.0	0.0	.	94
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2698242	2698242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM193A	NM_001256667	exon17	c.G2622T	p.L874F	TTTGTTGCAGTTT	.	190.0	54.0	163.0	0.0	.	93
FCGR1A	2209	bcgsc.ca;mdanderson.org	37	1	149761838	149761838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FCGR1A	NM_000566	exon5	c.C788A	p.A263D	AGGCTGCCACAGA	.	203.0	91.0	165.0	2.0	.	23
FGA	2243	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155505870	155505870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FGA	NM_000508	exon6	c.G2007T	p.L669F	TCCTCCCAAACTG	.	56.0	7.0	54.0	0.0	.	93
GALNT18	374378	ucsc.edu;bcgsc.ca	37	11	11348656	11348656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_198516	exon9	c.A1489G	p.I497V	GGCAGATGTACAT	.	36.0	4.0	36.0	0.0	.	.
GH2	2689	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61957781	61957781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GH2	NM_002059	exon5	c.A554C	p.N185T	CCGTAGTTCTTGA	.	334.0	34.0	307.0	1.0	.	93
GPHN	10243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67382766	67382766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPHN	NM_001024218	exon6	c.G436C	p.G146R	CTGCCAGGTAGCA	.	73.0	20.0	70.0	1.0	.	228
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41555141	41555141	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPR34	NM_001097579	exon3	c.A255G	p.K85K	CCGTAAAAGAAAT	.	105.0	50.0	49.0	0.0	.	131
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45948313	45948313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GYLTL1B	NM_152312	exon10	c.C1216T	p.R406W	GAGTTCCGGCAGC	.	34.0	16.0	32.0	0.0	.	92
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50686155	50686155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HDAC10	NM_032019	exon14	c.T1388C	p.L463P	TACAGGAGCTTCC	.	31.0	4.0	50.0	0.0	.	226
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62196247	62196247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001037335	exon9	c.C3928A	p.P1310T	CCGACGGGGGCAC	.	42.0	4.0	69.0	0.0	.	.
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28465614	28465614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HERC2	NM_004667	exon37	c.C5829A	p.D1943E	CTCTGTGTCCGAA	.	23.0	9.0	18.0	0.0	.	234
HIST1H3B	8358	ucsc.edu;bcgsc.ca	37	6	26032260	26032260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HIST1H3B	NM_003537	exon1	c.A29G	p.K10R	GTGGATTTCCGAG	.	26.0	4.0	33.0	0.0	.	92
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33296847	33296847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HUNK	NM_014586	exon2	c.G329A	p.R110Q	TGCGGCGAGAGGG	.	67.0	18.0	38.0	0.0	.	334
IKBKE	9641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206649567	206649567	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IKBKE	NM_001193322	exon6	c.C402T	p.R134R	GCATCGCGACATC	.	64.0	38.0	58.0	0.0	.	1061
INTS10	55174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	19682357	19682358	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	INTS10	NM_018142	exon8	c.880_881insA	p.Y294_M295delinsX	TGCAGATACATGA	.	64.0	27.0	57.0	0.0	.	91
IQUB	154865	ucsc.edu;bcgsc.ca	37	7	123101527	123101527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IQUB	NM_178827	exon11	c.C1891A	p.L631I	TCTGAAGGTTAAT	.	36.0	4.0	68.0	0.0	.	156
ISLR	3671	ucsc.edu;bcgsc.ca	37	15	74468332	74468332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISLR	NM_201526	exon2	c.C1133A	p.P378Q	TGCAGCCATCAGG	.	40.0	4.0	43.0	0.0	.	155
ISYNA1	51477	ucsc.edu;bcgsc.ca	37	19	18545774	18545774	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISYNA1	NM_016368	exon11	c.C1626A	p.T542T	ATCACCGGTGCAG	.	71.0	8.0	116.0	0.0	.	92
KIAA0930	23313	ucsc.edu;bcgsc.ca	37	22	45593691	45593691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA0930	NM_015264	exon9	c.C1169A	p.P390Q	TGCAGCGGCAACG	.	51.0	5.0	71.0	0.0	.	90
KIAA1549L	25758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33682506	33682506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_012194	exon19	c.G5214A	p.Q1738Q	GAACCAGGCCTGG	.	37.0	11.0	33.0	0.0	.	.
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51530742	51530742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLK11	NM_144947	exon1	c.A32G	p.K11R	GATGACTTCCAGT	.	31.0	14.0	34.0	0.0	.	650
KLKB1	3818	ucsc.edu;bcgsc.ca	37	4	187175845	187175845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLKB1	NM_000892	exon12	c.C1417A	p.Q473K	ATTCACCAAAACT	.	43.0	4.0	78.0	0.0	.	227
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46117591	46117591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP10-12	NM_198699	exon1	c.C475T	p.P159S	TGCAAGCCCATCT	.	107.0	37.0	163.0	0.0	.	90
LMO4	8543	ucsc.edu;bcgsc.ca	37	1	87805235	87805235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LMO4	NM_006769	exon3	c.G253T	p.G85C	AATAGCGGTGCTT	.	57.0	5.0	51.0	0.0	.	226
LPIN3	64900	ucsc.edu;bcgsc.ca	37	20	39985684	39985684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LPIN3	NM_022896	exon15	c.G1808A	p.R603H	AGCGGCGCCTGAA	.	25.0	5.0	28.0	0.0	.	93
LRIT3	345193	ucsc.edu;bcgsc.ca	37	4	110791566	110791566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRIT3	NM_198506	exon4	c.T1661C	p.V554A	CCTGTGTCTGTCC	.	46.0	4.0	53.0	0.0	.	90
LRP6	4040	ucsc.edu;bcgsc.ca	37	12	12332824	12332824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRP6	NM_002336	exon7	c.C1465A	p.L489I	AACCAAGAGAAGT	.	44.0	4.0	52.0	0.0	.	661
LRRC16A	55604	broad.mit.edu;bcgsc.ca	37	6	25492251	25492251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC16A	NM_001173977	exon15	c.C1219A	p.R407R	TCTCACCGGTATA	.	186.0	10.0	133.0	0.0	.	137
MAD2L1BP	9587	ucsc.edu;bcgsc.ca	37	6	43608100	43608100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MAD2L1BP	NM_001003690	exon4	c.C751A	p.R251S	GGACACCGCAACT	.	43.0	4.0	38.0	0.0	.	90
MED12	9968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	70338632	70338632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED12	NM_005120	exon1	c.G28C	p.E10Q	AGCTACGAACACC	.	72.0	54.0	90.0	1.0	.	272
MED23	9439	ucsc.edu;bcgsc.ca	37	6	131917145	131917145	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED23	NM_015979	exon23	c.G2955T	p.P985P	GGATACCGGAAGC	.	36.0	5.0	37.0	0.0	.	24
MEGF11	84465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66209210	66209210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MEGF11	NM_032445	exon17	c.C2171T	p.A724V	TGGCAGGCCCCGT	.	81.0	29.0	44.0	0.0	.	69
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39883537	39883537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MGAT3	NM_002409	exon2	c.C185A	p.P62H	CCAGCCCCGAGCC	.	47.0	18.0	60.0	0.0	.	90
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66204833	66204833	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MRPL11	NM_170739	exon3	c.301delG	p.A101fs	GCCGGGCCCCCTT	.	42.0	12.0	75.0	0.0	.	90
MSRB1	51734	ucsc.edu;bcgsc.ca	37	16	1991321	1991321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	GGTCTCGGTGAAC	.	26.0	4.0	30.0	0.0	.	.
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9028261	9028261	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MUC16	NM_024690	exon11	c.C36531T	p.G12177G	GTAGGGGCCCAGC	.	66.0	15.0	73.0	1.0	.	566
MYO10	4651	ucsc.edu;bcgsc.ca	37	5	16783575	16783575	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO10	NM_012334	exon5	c.T471C	p.G157G	ACTTTCACCACTG	.	72.0	6.0	67.0	0.0	.	3
MYO9B	4650	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17317927	17317927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO9B	NM_001130065	exon35	c.C5498T	p.A1833V	GGGTGGCCCTGCT	.	59.0	16.0	74.0	0.0	.	67
NAT14	57106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55997777	55997777	+	Silent	SNP	C	C	T	rs201053971		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAT14	NM_020378	exon3	c.C75T	p.A25A	ACAGGCCGGCGTG	.	21.0	11.0	15.0	0.0	C|0.999;T|0.000	91
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NBEA	NM_015678	exon29	c.G4739A	p.R1580H	AGTATCGTGACAT	.	184.0	62.0	76.0	0.0	.	144
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409410	142409410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NMBR	NM_002511	exon1	c.T386G	p.V129G	ACGGAAACCCCCA	.	23.0	7.0	20.0	0.0	.	946
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917336	26917336	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NOVA1	NM_002515	exon5	c.T1353A	p.T451T	TGCACCAGTCAAC	.	263.0	96.0	232.0	0.0	.	229
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44575878	44575878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NPC1L1	NM_001101648	exon4	c.T1831C	p.F611L	CCTGGAACATGCC	.	40.0	4.0	51.0	0.0	.	94
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115385895	115385895	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NRAP	NM_001261463	exon21	c.C2155A	p.R719R	TCTGCCGGTAGTT	.	42.0	4.0	39.0	0.0	.	522
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128722192	128722192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OCRL	NM_000276	exon21	c.C2293T	p.L765F	GAAGAGCTCCAGC	.	35.0	28.0	27.0	0.0	.	206
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347263	48347263	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR4C3	NM_001004702	exon1	c.G771A	p.G257G	AGATGGGAGATGC	.	206.0	21.0	183.0	0.0	.	69
OR5I1	10798	bcgsc.ca;mdanderson.org	37	11	55703216	55703216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR5I1	NM_006637	exon1	c.T661C	p.F221L	TGAAAAAGTAGGA	.	52.0	26.0	48.0	2.0	.	69
OSBPL2	9885	ucsc.edu;bcgsc.ca	37	20	60847187	60847187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBPL2	NM_144498	exon5	c.T265C	p.S89P	GAGCTGTCCAAGA	.	42.0	5.0	33.0	0.0	.	69
OTX1	5013	ucsc.edu;bcgsc.ca	37	2	63281316	63281316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OTX1	NM_014562	exon4	c.C232T	p.P78S	AACCTGCCGGAGT	.	33.0	4.0	51.0	0.0	.	70
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563257	140563257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCDHB16	NM_020957	exon1	c.T1123A	p.S375T	CCTGACTCCGGAA	.	59.0	26.0	77.0	0.0	.	92
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17208109	17208109	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCSK2	NM_002594	exon1	c.C159T	p.H53H	AGAACACGGCTTT	.	86.0	33.0	80.0	0.0	.	157
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28269056	28269056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGBD1	NM_001184743	exon7	c.G1425T	p.R475S	TAGAAGGGAAATG	.	129.0	54.0	94.0	0.0	.	94
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204438107	204438107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PIK3C2B	NM_002646	exon3	c.C824T	p.A275V	CTCCTGGCCACGG	.	67.0	22.0	51.0	0.0	.	1310
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38528998	38528998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLA2G6	NM_003560	exon7	c.G917A	p.R306Q	CAGCCCCGTTTCA	.	39.0	17.0	57.0	0.0	.	91
PLEKHG3	26030	ucsc.edu;bcgsc.ca	37	14	65208684	65208684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHG3	NM_015549	exon14	c.A2281G	p.I761V	GTGAAGATCTGGG	.	27.0	4.0	35.0	0.0	.	91
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57860856	57860856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR2B	NM_000938	exon5	c.A400G	p.K134E	GTCATTAAAGAAG	.	46.0	29.0	54.0	0.0	.	92
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29242666	29242666	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POMP	NM_015932	exon4	c.A219G	p.L73L	GGGTCTATTTGCT	.	75.0	19.0	68.0	0.0	.	90
PPARA	5465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46615711	46615711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPARA	NM_001001928	exon6	c.A511C	p.I171L	CTAGCGATTCGTT	.	43.0	22.0	25.0	0.0	.	611
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4943555	4943555	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPL	NM_002705	exon13	c.C1479A	p.T493T	ATTCTCGGTCTTC	.	48.0	4.0	70.0	0.0	.	95
PSRC1	84722	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	109824628	109824628	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PSRC1	NM_001032291	exon4	c.G132T	p.R44R	GAGGCCCCGTCGA	.	22.0	8.0	31.0	0.0	.	90
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	112145782	112145782	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPN3	NM_002829	exon23	c.2303delG	p.G768fs	AAGCCGCCGTGGT	.	55.0	18.0	60.0	0.0	.	229
PTPRE	5791	broad.mit.edu;bcgsc.ca	37	10	129871633	129871633	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPRE	NM_006504	exon17	c.C1497A	p.T499T	CGCCACCCAGGGG	.	79.0	6.0	92.0	0.0	.	227
RALGPS2	55103	broad.mit.edu;bcgsc.ca	37	1	178866879	178866879	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RALGPS2	NM_152663	exon17	c.C1512A	p.T504T	GGCTACCGAAAGA	.	197.0	10.0	118.0	0.0	.	226
RBM20	282996	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	112572161	112572161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001134363	exon9	c.G2006A	p.W669X	CTGACTGGGGCAA	.	20.0	5.0	21.0	0.0	.	.
RBM22	55696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150072842	150072842	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBM22	NM_018047	exon9	c.A939G	p.K313K	TTTCTCTTTTTCT	.	29.0	6.0	49.0	0.0	.	226
RCN2	5955	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77241537	77241537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RCN2	NM_001271837	exon8	c.G982T	p.D328Y	CATGATGACTATT	.	37.0	9.0	50.0	0.0	.	90
ROBO2	6092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77626718	77626718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ROBO2	NM_002942	exon15	c.G2281T	p.D761Y	TCCTGGGATCCTC	.	133.0	47.0	84.0	1.0	.	328
RP1L1	94137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10470139	10470139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RP1L1	NM_178857	exon4	c.G1469T	p.G490V	TCAGCCCCTATCT	.	36.0	11.0	25.0	0.0	.	139
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254616	55254616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A619G	p.M207V	AGTCCATATTTTC	.	50.0	16.0	22.0	0.0	.	155
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254618	55254618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A617C	p.N206T	TCCATATTTTCTG	.	49.0	17.0	21.0	0.0	.	155
SEPT4	5414	broad.mit.edu;bcgsc.ca	37	17	56599413	56599413	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEPT4	NM_001256782	exon7	c.C757A	p.R253R	CGTCTCGGAAATA	.	174.0	9.0	121.0	0.0	.	68
SIN3A	25942	ucsc.edu;bcgsc.ca	37	15	75694204	75694204	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SIN3A	NM_001145358	exon10	c.T1515C	p.S505S	GAAAGGAGAGACT	.	32.0	4.0	40.0	0.0	.	230
SLC10A1	6554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70252897	70252897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC10A1	NM_003049	exon2	c.T484C	p.S162P	CCAGTGATATCAC	.	76.0	36.0	70.0	0.0	.	91
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48595052	48595052	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC12A1	NM_001184832	exon27	c.T3270C	p.N1090N	AGGAAATCACAAA	.	89.0	31.0	66.0	0.0	.	24
SLC19A3	80704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228563990	228563990	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC19A3	NM_025243	exon3	c.G441T	p.T147T	GGCCAGCGTGACG	.	43.0	9.0	31.0	0.0	.	92
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42065035	42065035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC30A9	NM_006345	exon11	c.C929T	p.S310L	TTTCTTCGCTAAT	.	411.0	17.0	246.0	0.0	.	91
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139947621	139947621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC35A4	NM_080670	exon3	c.C867A	p.V289V	GGTGGTCAACGCC	.	61.0	23.0	52.0	0.0	.	90
SLC35G5	83650	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	11189305	11189305	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_054028	exon1	c.G690A	p.G230G	GGTGGGGCTGCTG	.	55.0	22.0	60.0	0.0	.	.
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC39A10	NM_020342	exon9	c.C2279A	p.T760K	ACATCACACTTTG	.	315.0	151.0	162.0	0.0	.	92
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52549455	52549455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STAB1	NM_015136	exon37	c.G3881T	p.S1294I	GGAAGAGCTGTGT	.	35.0	16.0	50.0	0.0	.	139
STIL	6491	ucsc.edu;bcgsc.ca	37	1	47748108	47748108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STIL	NM_003035	exon11	c.G1157T	p.G386V	ATCTTCCCAGAAG	.	40.0	6.0	28.0	0.0	.	659
SUN1	23353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	909049	909049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUN1	NM_001130965	exon17	c.C2044T	p.L682F	GTGAGGCTCTCCA	.	22.0	6.0	24.0	0.0	.	90
SUPT6H	6830	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27027520	27027520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUPT6H	NM_003170	exon35	c.G4796A	p.S1599N	GCAGCAGTGCTTA	.	30.0	5.0	41.0	0.0	.	93
TATDN2	9797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10290922	10290922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TATDN2	NM_014760	exon2	c.G38T	p.S13I	ACTGGAGCAGCAC	.	63.0	13.0	52.0	0.0	.	92
TBC1D8	11138	ucsc.edu;bcgsc.ca	37	2	101624722	101624722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D8	NM_001102426	exon20	c.A2984G	p.Q995R	CAGAACTGGATAA	.	34.0	4.0	23.0	0.0	.	25
TET1	80312	ucsc.edu;bcgsc.ca	37	10	70333688	70333688	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TET1	NM_030625	exon2	c.C1593A	p.A531A	TATAGCCCAACTC	.	43.0	4.0	30.0	0.0	.	663
TMEM174	134288	ucsc.edu;bcgsc.ca	37	5	72469916	72469916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMEM174	NM_153217	exon2	c.A656G	p.E219G	TAGAAGAGACACA	.	45.0	4.0	39.0	0.0	.	91
TNFAIP2	7127	ucsc.edu;bcgsc.ca	37	14	103600074	103600074	+	Missense_Mutation	SNP	G	G	A	rs201264217		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP2	NM_006291	exon10	c.G1757A	p.R586H	TCATTCGCCTGCA	.	25.0	4.0	18.0	0.0	.	90
TNFAIP8L3	388121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51397266	51397266	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP8L3	NM_207381	exon1	c.G108A	p.R36R	GGCATCCCTTGTG	.	126.0	37.0	111.0	0.0	.	90
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175048705	175048705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNN	NM_022093	exon3	c.G646A	p.V216M	CGCGGCGTGTGCC	.	54.0	26.0	55.0	0.0	.	138
TOR2A	27433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130494466	130494466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOR2A	NM_001134430	exon4	c.C685T	p.R229C	GAGCACGCAGTGC	.	47.0	19.0	78.0	0.0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	61.0	35.0	79.0	0.0	.	70225
TRAF6	7189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36516546	36516546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRAF6	NM_004620	exon5	c.A658G	p.T220A	GTATAGTATTGCA	.	354.0	123.0	197.0	0.0	.	660
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73254017	73254017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM3	NM_001007471	exon11	c.C1540A	p.R514S	GAAAACGGTGCAT	.	42.0	5.0	53.0	0.0	.	521
TRPM5	29850	ucsc.edu;bcgsc.ca	37	11	2426267	2426267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM5	NM_014555	exon24	c.A3398G	p.Q1133R	CAGTGCTGAGAGC	.	44.0	4.0	46.0	0.0	.	137
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179648462	179648462	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTN	NM_001267550	exon17	c.A2826G	p.P942P	AGTTGGTGGAGTA	.	161.0	76.0	96.0	0.0	.	636
UBAP2L	9898	hgsc.bcm.edu;bcgsc.ca	37	1	154221748	154221748	+	Missense_Mutation	SNP	G	G	T	rs200980910	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBAP2L	NM_001127320	exon12	c.G1048T	p.G350C	GATGTCGGTGAAG	.	231.0	13.0	170.0	0.0	G|0.999;A|0.000	91
UBE3C	9690	ucsc.edu;bcgsc.ca	37	7	157046656	157046656	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBE3C	NM_014671	exon20	c.A2703G	p.E901E	AGTTGAACTAAAA	.	40.0	4.0	36.0	0.0	.	704
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17530990	17530990	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USH1C	NM_153676	exon18	c.T1926C	p.N642N	CACTGGATTGCCT	.	91.0	21.0	96.0	0.0	.	91
USP6NL	9712	ucsc.edu;bcgsc.ca	37	10	11543112	11543112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USP6NL	NM_001080491	exon6	c.G423T	p.R141S	CAGGTCCCTTGTT	.	47.0	4.0	46.0	0.0	.	628
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69965734	69965734	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WWP2	NM_001270454	exon16	c.C1623T	p.R541R	CCTGCGCCGCCGG	.	23.0	13.0	32.0	0.0	.	658
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	745776	745776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	YES1	NM_005433	exon6	c.A656G	p.N219S	CCACCATTGTCAA	.	152.0	62.0	103.0	0.0	.	547
ZAK	0	broad.mit.edu;bcgsc.ca	37	2	173955772	173955772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZAK	NM_133646	exon2	c.G13T	p.G5C	TCTCTCGGTGCCT	.	216.0	11.0	118.0	0.0	.	522
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	8	77766028	77766028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZFHX4	NM_024721	exon10	c.A6871G	p.T2291A	GCAGAAACAAAAG	.	41.0	4.0	39.0	0.0	.	98
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133733009	133733009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF10	NM_015394	exon5	c.A1177G	p.I393V	CATCTCATTCTGC	.	66.0	25.0	64.0	0.0	.	154
ZNF248	57209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38121994	38121994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF248	NM_001267606	exon4	c.G289C	p.D97H	GGTCATCTTCATT	.	76.0	26.0	40.0	0.0	.	91
ZNF268	10795	broad.mit.edu;bcgsc.ca	37	12	133768159	133768159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF268	NM_152943	exon4	c.A319G	p.R107G	CTGTACAGGAGTG	.	147.0	8.0	119.0	0.0	.	23
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43323547	43323547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF318	NM_014345	exon4	c.C1525T	p.R509C	GAATGCGGGAAAA	.	104.0	40.0	64.0	1.0	.	157
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23545393	23545393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF91	NM_003430	exon4	c.G388T	p.D130Y	ACTCATCCACACT	.	130.0	37.0	104.0	0.0	.	90