Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57215517	57215517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	AASDH	NM_181806	exon11	c.C2400A	p.Y800X	CCCAGAGTAAAAG	.	123.0	50.0	152.0	0.0	.	94
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu	37	2	73680580	73680580	+	Missense_Mutation	SNP	C	C	T	rs147001219	by1000genomes	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ALMS1	NM_015120	exon8	c.C6923T	p.T2308M	CTTCCACGGGTGT	.	86.0	4.0	74.0	0.0	C|0.999;T|0.000	142
ANXA6	309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150483246	150483246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ANXA6	NM_001155	exon25	c.1847delG	p.G616fs	TCTGTGCCAGCAC	.	53.0	22.0	86.0	0.0	.	22
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49719195	49719195	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	APEH	NM_001640	exon16	c.C1479T	p.S493S	TGGCAGCCCTCCA	.	166.0	21.0	187.0	0.0	.	91
C19orf43	79002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12845284	12845284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	C19orf43	NM_024038	exon1	c.G188A	p.G63D	AAGCTGCCGTCGT	.	20.0	5.0	27.0	0.0	.	90
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	1263800	1263800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CACNA1H	NM_021098	exon27	c.T4798C	p.Y1600H	CCCTACTATGCCG	.	22.0	5.0	35.0	0.0	.	67
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65788038	65788038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CATSPER1	NM_053054	exon7	c.T1988C	p.L663P	CACTTGAGGAAGA	.	120.0	42.0	105.0	0.0	.	92
CEP135	9662	hgsc.bcm.edu;broad.mit.edu	37	4	56835289	56835289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CEP135	NM_025009	exon9	c.C1105T	p.Q369X	AAACTTCAGCTGG	.	125.0	5.0	117.0	0.0	.	94
CERS4	79603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8321909	8321909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_024552	exon9	c.G689A	p.R230H	TGCTGCGCATTGG	.	212.0	17.0	215.0	0.0	.	.
CKB	1152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103986257	103986257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CKB	NM_001823	exon8	c.G1090A	p.E364K	GCTGCTCCATCTC	.	43.0	16.0	47.0	0.0	.	115
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56345032	56345032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CLOCK	NM_004898	exon6	c.A206T	p.D69V	GATTTGTCCATCT	.	104.0	43.0	102.0	0.0	.	515
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180815590	180815590	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CWC22	NM_020943	exon18	c.C1881T	p.A627A	GTTGATGGCAAAC	.	32.0	18.0	48.0	0.0	.	90
DEK	7913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18249918	18249918	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DEK	NM_003472	exon7	c.G726A	p.E242E	TGAAGACTCTTCC	.	111.0	8.0	58.0	0.0	.	658
DTNA	1837	hgsc.bcm.edu;bcgsc.ca	37	18	32418068	32418068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DTNA	NM_001390	exon11	c.1105delA	p.K369fs	CCTCCCAAGGACA	.	93.0	25.0	114.0	0.0	.	153
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42116418	42116418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GLI3	NM_000168	exon4	c.C406A	p.P136T	CAATTGGTACAGG	.	175.0	33.0	161.0	0.0	.	1149
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	54756722	54756722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GPR84	NM_020370	exon2	c.G914A	p.R305K	GCTCTTCTGGCTC	.	135.0	9.0	154.0	0.0	.	523
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65680865	65680865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	IGDCC4	NM_020962	exon16	c.A2767T	p.M923L	CCCCCATCTTGAA	.	82.0	30.0	101.0	0.0	.	93
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133141974	133141974	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KCNQ3	NM_004519	exon15	c.G2154C	p.V718V	CAGGTTCACAGGG	.	304.0	89.0	176.0	0.0	.	138
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901509	24901509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KHNYN	NM_015299	exon3	c.C1042A	p.H348N	CGGCTCCACAATG	.	150.0	8.0	174.0	0.0	.	93
LRP12	29967	broad.mit.edu;bcgsc.ca	37	8	105502999	105502999	+	Missense_Mutation	SNP	G	G	A	rs138849088	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	LRP12	NM_013437	exon7	c.C2482T	p.R828C	CACAGCGCTCACA	.	393.0	26.0	281.0	1.0	G|1.000;A|0.000	90
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119425666	119425666	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_033364	exon2	c.T135C	p.F45F	ATTGTTTATTGTG	.	90.0	28.0	121.0	1.0	.	.
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1998979	1998979	+	Silent	SNP	G	G	A	rs112978000	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	MYOM2	NM_003970	exon2	c.G99A	p.A33A	ATATGCGTCAAAA	.	99.0	41.0	134.0	0.0	A|0.001;C|0.000;G|0.999	95
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95152228	95152228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	OGN	NM_033014	exon5	c.C538G	p.L180V	GTTTTAGTAGTTG	.	29.0	14.0	56.0	0.0	.	492
PCBP3	54039	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	47330914	47330914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PCBP3	NM_001130141	exon7	c.C570A	p.C190X	CCAGTGCGTCAAG	.	76.0	29.0	93.0	1.0	.	227
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu	37	Y	5605945	5605945	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_032973	exon5	c.A3985T	p.R1329X	CCGTCCAGAGGTG	.	242.0	220.0	241.0	1.0	.	.
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87622910	87622910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPN13	NM_006264	exon7	c.G1151T	p.R384I	GAGAGAGACAAAA	.	64.0	8.0	119.0	1.0	.	230
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	40730794	40730795	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPRT	NM_133170	exon27	c.3741_3742insTC	p.S1247fs	ATTGCTGGATTCT	.	138.0	62.0	173.0	0.0	.	664
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48953741	48953742	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	RB1	NM_000321	exon14	c.1344_1345insG	p.L448fs	CAAACTTGGAGTT	.	25.0	19.0	91.0	0.0	.	3784
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54624616	54624616	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SKIV2L2	NM_015360	exon5	c.A492C	p.S164S	TACCTCAGCGGGA	.	66.0	27.0	76.0	0.0	.	92
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23429092	23429092	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC25A37	NM_016612	exon4	c.C741T	p.L247L	GGCCCTCGCCGCG	.	33.0	16.0	39.0	0.0	.	90
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203672	2203672	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SMG6	NM_017575	exon2	c.T375C	p.A125A	TTGTCCAGCAGTC	.	17.0	15.0	30.0	0.0	.	228
STC1	6781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23709890	23709890	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	STC1	NM_003155	exon2	c.G126T	p.V42V	ACGAACCACTTCA	.	115.0	44.0	127.0	1.0	.	94
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141464093	141464093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TAS2R3	NM_016943	exon1	c.C135G	p.D45E	GTCTGACTTCATC	.	148.0	6.0	172.0	0.0	.	90
TCHH	7062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152081138	152081138	+	Missense_Mutation	SNP	C	C	G	rs189687085	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TCHH	NM_007113	exon3	c.G4555C	p.E1519Q	CCTCCTCGAGGAA	.	120.0	24.0	73.0	1.0	C|0.999;T|0.000	72
TDO2	6999	ucsc.edu;bcgsc.ca	37	4	156826233	156826233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TDO2	NM_005651	exon3	c.G156T	p.L52F	AGTTTTGAATGCA	.	42.0	4.0	100.0	0.0	.	514
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19245614	19245614	+	Missense_Mutation	SNP	C	C	G	rs143085909	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TMEM161A	NM_001256766	exon2	c.G86C	p.R29P	AGCCAGCGCGCGA	.	56.0	27.0	56.0	0.0	C|1.000;A|0.000	154
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30365347	30365347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TPX2	NM_012112	exon9	c.G788T	p.R263L	ACTTCCGCACAGA	.	153.0	68.0	169.0	0.0	.	290
UGT2B4	7363	hgsc.bcm.edu;bcgsc.ca	37	4	70361558	70361580	+	Frame_Shift_Del	DEL	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	UGT2B4	NM_021139	wholegene			GAAGAGCTGAAGT	.	58.0	5.0	73.0	0.0	.	92
USE1	55850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17330476	17330476	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_018467	exon8	c.C634G	p.L212V	CAGAACCTGGAGA	.	162.0	10.0	145.0	0.0	.	.
WDFY4	57705	broad.mit.edu;ucsc.edu	37	10	50108278	50108278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WDFY4	NM_020945	exon46	c.G7450T	p.E2484X	GCCCTGGAGATCT	.	136.0	63.0	167.0	1.0	.	22
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414248	32414248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WT1	NM_024424	exon8	c.T1303C	p.S435P	GGTCTGAACGAGA	.	243.0	101.0	260.0	0.0	.	6891
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100004329	100004329	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZCWPW1	NM_001258008	exon12	c.G1161A	p.E387E	TGATAGCTCCAGG	.	85.0	8.0	83.0	0.0	.	90
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3335687	3335687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZNF263	NM_005741	exon3	c.C575G	p.S192C	CATTATCTGCTCC	.	142.0	27.0	133.0	0.0	.	94