Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215813394	215813394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCA12	NM_173076	exon47	c.G7030A	p.D2344N	CCAGGTCATCTAA	.	159.0	59.0	140.0	0.0	.	99
ABCB5	340273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20685646	20685646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCB5	NM_001163941	exon9	c.T866A	p.V289E	CAAAAGTGTCTCT	.	165.0	42.0	117.0	1.0	.	158
ABCC11	85320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48234210	48234210	+	Missense_Mutation	SNP	C	C	T	rs16945928	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCC11	NM_033151	exon14	c.G2059A	p.V687I	CCAGGACGACCGT	.	60.0	27.0	76.0	0.0	C|0.988;T|0.012	95
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141567	25141567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ADCY3	NM_004036	exon1	c.C290A	p.A97D	ACCACAGCACACA	.	138.0	52.0	147.0	0.0	.	94
ALDH7A1	501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	125896800	125896800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ALDH7A1	NM_001202404	exon10	c.A969G	p.E323E	TCCAAGTTCCAAC	.	505.0	172.0	473.0	0.0	.	227
ANKRD55	79722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55472050	55472050	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ANKRD55	NM_024669	exon4	c.T241C	p.L81L	TCTTCAACAGCAG	.	100.0	41.0	76.0	0.0	.	91
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201531449	201531449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	AOX1	NM_001159	exon32	c.A3583G	p.I1195V	TGCAGTATAAATC	.	83.0	39.0	73.0	0.0	.	96
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133327679	133327679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ASS1	NM_054012	exon2	c.G64T	p.V22L	ATCCTCGTGTGGC	.	53.0	26.0	68.0	0.0	.	91
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32084267	32084267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ATF6B	NM_004381	exon17	c.G1872A	p.M624I	GGGGGCCATGGCA	.	175.0	54.0	61.0	0.0	.	90
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43846653	43846653	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	BLVRA	NM_001253823	exon9	c.C710G	p.S237C	CTGGGTCCTTGGA	.	72.0	26.0	56.0	0.0	.	91
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57513362	57513362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001145101	exon3	c.G383A	p.G128E	AACTTTCCACCCT	.	108.0	43.0	100.0	0.0	.	.
C8orf86	389649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38386043	38386043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	C8orf86	NM_207412	exon1	c.A113G	p.E38G	CCAAGCTCCTCAG	.	47.0	32.0	74.0	0.0	.	90
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67699851	67699851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CAND1	NM_018448	exon10	c.A2403C	p.K801N	TGCCAAATGTGTA	.	80.0	38.0	63.0	0.0	.	516
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180359906	180359906	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC39	NM_181426	exon13	c.T1749A	p.L583L	TAGGGAAAGAACT	.	102.0	42.0	83.0	0.0	.	72
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	132290493	132290493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74A	NM_001258305	exon5	c.G740A	p.R247K	CCCGGAGGAAGCT	.	218.0	42.0	260.0	0.0	.	69
CCDC74B	91409	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130897613	130897613	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74B	NM_207310	exon6	c.G933A	p.E311E	AGCTTCCTCCGGG	.	75.0	28.0	74.0	1.0	.	90
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34057783	34057783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CEP250	NM_007186	exon10	c.A920G	p.K307R	TGATAAAGGCTCT	.	85.0	38.0	66.0	0.0	.	27
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57731023	57731023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CGNL1	NM_001252335	exon3	c.C826T	p.L276F	GATGTTCTTCCCT	.	237.0	58.0	196.0	0.0	.	100
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281700	140281700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CLSTN2	NM_022131	exon14	c.T2260G	p.Y754D	ATCCGCTACCGCA	.	121.0	47.0	116.0	0.0	.	157
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98996755	98996755	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNGA3	NM_001298	exon4	c.C333A	p.S111S	GGTGTCCAGCCAA	.	90.0	38.0	115.0	0.0	.	96
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	1189706	1189706	+	Nonsense_Mutation	SNP	G	G	A	rs144055237	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNTN6	NM_014461	exon2	c.G14A	p.W5X	TGCTATGGAAACT	.	171.0	62.0	122.0	0.0	G|1.000;C|0.000	345
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103548452	103548452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL11A1	NM_001854	exon2	c.C183G	p.C61W	GTTTGTGCAAAAT	.	62.0	25.0	47.0	0.0	.	586
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94027070	94027070	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL1A2	NM_000089	exon2	c.G81A	p.E27E	ACAAGAGGTGAGT	.	301.0	83.0	148.0	0.0	.	521
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130129336	130129336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_153264	exon20	c.G4630T	p.V1544L	AAAGGGGTGCAAG	.	129.0	57.0	98.0	0.0	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	CTGGACTCTGGAA	.	154.0	70.0	183.0	0.0	.	24361
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155007	43155007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CUL9	NM_015089	exon6	c.C1411T	p.P471S	TGGAATCCTATGG	.	204.0	40.0	63.0	1.0	.	529
DCPS	28960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126201385	126201385	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DCPS	NM_014026	exon3	c.G462A	p.T154T	AGAGACGGGAGAT	.	45.0	25.0	55.0	1.0	.	90
DGCR14	8220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19124884	19124884	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DGCR14	NM_022719	exon8	c.A987G	p.E329E	CGACCCTTCAACT	.	126.0	52.0	148.0	0.0	.	116
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61525548	61525548	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DIDO1	NM_001193369	exon13	c.2573-2A>T	.	CTGGCCTGAAGAA	.	38.0	17.0	41.0	0.0	.	96
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52434364	52434364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DNAH1	NM_015512	exon78	c.T12700A	p.S4234T	GGACACTCTACCA	.	78.0	34.0	87.0	0.0	.	67
DOCK3	1795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51412013	51412013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DOCK3	NM_004947	exon50	c.G5407A	p.G1803R	GAGAACGGACAGG	.	164.0	72.0	155.0	1.0	.	22
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108381599	108381599	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	EXPH5	NM_015065	exon6	c.G4635A	p.Q1545Q	TGCCTCCTGACTT	.	89.0	43.0	89.0	0.0	.	95
FAM124A	220108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	51854702	51854702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM124A	NM_145019	exon5	c.C1059A	p.S353R	TGGCAGCAGCCAG	.	44.0	13.0	49.0	0.0	.	90
FAM208A	23272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56681127	56681127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001112736	exon14	c.C1638A	p.S546R	TATGGCGCTTATA	.	158.0	69.0	129.0	1.0	.	.
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190067609	190067609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM5C	NM_199051	exon8	c.C1840A	p.L614M	TCCCCAGAGTTAA	.	73.0	21.0	67.0	0.0	.	228
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37580989	37580998	+	Frame_Shift_Del	DEL	CAAAGAGCGG	CAAAGAGCGG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CAAAGAGCGG	CAAAGAGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM83D	NM_030919	exon4	c.1674_1683del	p.558_561del	CTTGAACAAAGAG	.	91.0	16.0	125.0	0.0	.	93
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10136948	10136948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FANCD2	NM_001018115	exon41	c.G4028A	p.G1343E	TGTGTGGGCATTC	.	117.0	58.0	110.0	0.0	.	229
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531036	92531036	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAT3	NM_001008781	exon9	c.C4857T	p.V1619V	ACCGGTCCTAGGC	.	174.0	75.0	182.0	0.0	.	73
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156492	34156492	+	Missense_Mutation	SNP	C	C	A	rs147225084	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FHOD3	NM_025135	exon6	c.C590A	p.T197N	TGTACACTCTCAT	.	86.0	32.0	82.0	0.0	C|1.000;T|0.000	139
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152282595	152282595	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLG	NM_002016	exon3	c.C4767A	p.R1589R	TCCCTGGCGCCTG	.	142.0	39.0	136.0	0.0	.	106
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089139	86089139	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLRT2	NM_013231	exon2	c.C1281A	p.L427L	CCAGCTCTCTATC	.	137.0	58.0	171.0	0.0	.	94
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359765	33359765	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T321C	p.S107S	TCTCTGACTTCCC	.	166.0	44.0	111.0	0.0	.	23
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359984	33359984	+	Silent	SNP	A	A	T	rs184741064	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T102A	p.S34S	TTTCATAGAGAAC	.	127.0	39.0	79.0	0.0	A|0.999;G|0.000	23
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79373018	79373018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FRAS1	NM_025074	exon46	c.G6556C	p.D2186H	TTGATTGACAAGT	.	55.0	20.0	56.0	0.0	.	68
GLDC	2731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6604681	6604681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GLDC	NM_000170	exon7	c.T965A	p.V322E	AGTGGCACTCCAA	.	253.0	69.0	113.0	1.0	.	92
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89325566	89325566	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GTF2B	NM_001514	exon5	c.A534G	p.K178K	CTTACCTTTAAAT	.	68.0	28.0	50.0	0.0	.	154
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50688856	50688856	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HDAC10	NM_032019	exon3	c.G291T	p.P97P	ACGCACCGGGTGG	.	57.0	36.0	68.0	0.0	.	226
HIST2H2BE	8349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858163	149858163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HIST2H2BE	NM_003528	exon1	c.G28T	p.A10S	TAGGGGCCGGAGC	.	192.0	58.0	125.0	1.0	.	69
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	3241784	3241784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HTT	NM_002111	exon67	c.T9427A	p.X3143R	ACCTGCTGAGCGC	.	81.0	44.0	88.0	0.0	.	281
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977380	107977380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	IRS4	NM_003604	exon1	c.A2195G	p.H732R	CGAGAGTGGCGCT	.	85.0	78.0	115.0	0.0	.	623
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618461	78618461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ITM2A	NM_004867	exon3	c.C419G	p.A140G	ATAATTGCTGCAG	.	157.0	140.0	140.0	1.0	.	131
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37432206	37432207	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001144990	exon4	c.370_371insA	p.E124fs	TTAGGTGAAAAAT	.	63.0	28.0	60.0	0.0	.	.
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334479	21334479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	KLHL9	NM_018847	exon1	c.A380G	p.E127G	GCAGCTTCAAGTG	.	116.0	46.0	107.0	0.0	.	94
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60892042	60892042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMA5	NM_005560	exon56	c.A7549G	p.R2517G	TGGCCCTCTGGGT	.	32.0	17.0	23.0	0.0	.	93
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111767	183111767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMC1	NM_002293	exon28	c.G4672A	p.V1558M	AGGAAAGTGTCTG	.	125.0	37.0	71.0	0.0	.	252
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32740006	32740006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCK	NM_005356	exon2	c.C76G	p.P26A	CATTATCCCATAG	.	95.0	46.0	79.0	0.0	.	1378
LCTL	197021	broad.mit.edu;bcgsc.ca	37	15	66850163	66850163	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCTL	NM_207338	exon8	c.C819G	p.P273P	GTCCTTGGGGTTA	.	204.0	10.0	113.0	0.0	.	92
MAGEA6	4105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151870008	151870008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAGEA6	NM_005363	exon3	c.G698T	p.G233V	TTGAGGGGAGGGA	.	222.0	10.0	134.0	0.0	.	90
MAP6D1	79929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	183543020	183543020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAP6D1	NM_024871	exon1	c.G316A	p.A106T	GTGGCGCGGAGGA	.	23.0	10.0	30.0	0.0	.	90
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87024360	87024360	+	Missense_Mutation	SNP	G	G	A	rs138883015		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAPK10	NM_002753	exon6	c.C404T	p.T135M	TCCAGCGTTTTCT	.	50.0	19.0	43.0	0.0	G|1.000;A|0.000	1402
MECOM	2122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168810848	168810848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MECOM	NM_004991	exon14	c.G3062C	p.G1021A	ATCGCACCTGTAC	.	62.0	6.0	45.0	1.0	.	853
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135095832	135095832	+	Silent	SNP	G	G	A	rs138350444		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MGAT5	NM_002410	exon6	c.G648A	p.A216A	CTAGGCGGAAATT	.	228.0	103.0	226.0	0.0	G|0.999;A|0.001	93
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31328358	31328358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MORC2	NM_014941	exon25	c.A2643G	p.I881M	AAAAGATATTAGC	.	54.0	30.0	69.0	0.0	.	92
MTHFD1	4522	broad.mit.edu;bcgsc.ca	37	14	64914955	64914955	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MTHFD1	NM_005956	exon23	c.A2199G	p.K733K	TGAAAAAGGCTTC	.	98.0	6.0	74.0	0.0	.	92
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42338684	42338684	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYBL2	NM_002466	exon10	c.C1587T	p.Y529Y	GAAGTACGGACCC	.	71.0	16.0	103.0	0.0	.	415
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10399270	10399270	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon35	c.C5166G	p.T1722T	CACCTGGGTGTGC	.	59.0	28.0	63.0	0.0	.	171
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408340	10408340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon22	c.G2478A	p.M826I	CACATTCATGAAG	.	67.0	31.0	85.0	0.0	.	171
NCOA6	23054	broad.mit.edu;ucsc.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	38.0	4.0	57.0	0.0	.	292
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75590868	75590868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NEK9	NM_033116	exon2	c.G278A	p.R93H	TCACGACGTTCCT	.	134.0	13.0	131.0	0.0	.	359
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32166274	32166274	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NOTCH4	NM_004557	exon26	c.G4680T	p.A1560A	AGGGAGCGCCCCA	.	176.0	67.0	99.0	0.0	.	1321
NSUN3	63899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93802963	93802963	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NSUN3	NM_022072	exon3	c.A135G	p.T45T	ACTAACATCTCCA	.	117.0	48.0	126.0	0.0	.	91
NUAK2	81788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205273292	205273292	+	Silent	SNP	C	C	T	rs149020592	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NUAK2	NM_030952	exon7	c.G1173A	p.T391T	ATCAGCCGTGTCA	.	107.0	32.0	90.0	0.0	C|0.999;T|0.001	391
OR2W5	441932	hgsc.bcm.edu;bcgsc.ca	37	1	247655247	247655247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR2W5	NM_001004698	exon1	c.818delT	p.V273fs	GGGAAGTTCCTGA	.	301.0	101.0	180.0	0.0	.	115
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875237	247875237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR6F1	NM_001005286	exon1	c.T821C	p.V274A	ACGTGGACAGCTT	.	93.0	30.0	69.0	0.0	.	68
OR9Q2	219957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57958110	57958110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR9Q2	NM_001005283	exon1	c.C148T	p.R50C	CTGATCCGTGGCG	.	91.0	44.0	126.0	0.0	.	115
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133197658	133197658	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	P2RX2	NM_170683	exon8	c.G846A	p.K282K	CCCCAAGTACTCC	.	42.0	24.0	50.0	0.0	.	68
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90690655	90690655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PABPC5	NM_080832	exon2	c.C79T	p.P27S	TTGGACCCAGATG	.	62.0	15.0	61.0	0.0	.	110
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3893207	3893207	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PANK2	NM_153638	exon4	c.G1338A	p.V446V	CAAAGTGGATAAA	.	121.0	36.0	77.0	0.0	.	115
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52598201	52598201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PBRM1	NM_018313	exon24	c.C3665T	p.T1222I	ATTTCAGTTGGCC	.	70.0	31.0	79.0	0.0	.	575
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145748546	145748546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZK1	NM_002614	exon4	c.A419G	p.K140R	TCGTGAAGGAAGG	.	467.0	268.0	284.0	0.0	.	90
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	41949558	41949558	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZRN4	NM_001164595	exon7	c.T1361A	p.L454X	GGATTTTGCAAGT	.	71.0	31.0	72.0	0.0	.	296
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61258660	61258660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PEX13	NM_002618	exon2	c.A199G	p.S67G	AGTAGCAGTGTGA	.	92.0	31.0	78.0	0.0	.	91
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120284487	120284487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PHGDH	NM_006623	exon10	c.C1176A	p.N392K	GGTGAACGCTAAG	.	43.0	15.0	50.0	0.0	.	91
PIGW	284098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	34894023	34894034	+	In_Frame_Del	DEL	AAGTAAATGTAG	AAGTAAATGTAG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	AAGTAAATGTAG	AAGTAAATGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PIGW	NM_178517	exon2	c.1073_1084del	p.358_362del	TAGTTCAAGTAAA	.	53.0	12.0	53.0	0.0	.	226
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526271	159526271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PKP4	NM_001005476	exon17	c.G2768A	p.G923D	TCCCCGGCGGCAA	.	186.0	83.0	224.0	0.0	.	97
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39792440	39792440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLCG1	NM_182811	exon10	c.T977C	p.L326P	ACCCTCTTTCCCA	.	82.0	39.0	73.0	0.0	.	911
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131829964	131829964	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLXNA4	NM_020911	exon29	c.C5139A	p.I1713I	GTACTTGATGGCC	.	195.0	44.0	136.0	0.0	.	91
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54763785	54763785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPAP2A	NM_176895	exon3	c.G406A	p.D136N	CTGGATCACAAAC	.	76.0	31.0	83.0	0.0	.	92
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113558467	113558467	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPP1R3A	NM_002711	exon1	c.T585A	p.V195V	AGGAGGAACCAAT	.	126.0	39.0	75.0	0.0	.	832
PRDM8	56978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	81123282	81123282	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRDM8	NM_001099403	exon4	c.C666A	p.G222G	TTTAGGCCCGGGT	.	154.0	67.0	213.0	0.0	.	91
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	42858275	42858275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRICKLE1	NM_001144882	exon7	c.C1561G	p.L521V	ACTCCAGGGAATC	.	108.0	47.0	89.0	0.0	.	518
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47192900	47192900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRKD2	NM_016457	exon14	c.A1865T	p.K622I	AACACTTTCTCAG	.	103.0	47.0	128.0	0.0	.	759
PRMT10	90826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148575293	148575293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRMT10	NM_138364	exon9	c.A1755T	p.L585F	CACATCTAACACG	.	148.0	69.0	148.0	2.0	.	91
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27222637	27222637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRSS16	NM_005865	exon10	c.T1316C	p.V439A	ACAAAGTGCTGTT	.	181.0	63.0	55.0	0.0	.	94
PSG3	5671	broad.mit.edu;mdanderson.org	37	19	43234066	43234066	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSG3	NM_021016	exon4	c.C852A	p.P284P	TACCCTGGGACTG	.	26.0	14.0	31.0	0.0	.	92
PSMB7	5695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127174695	127174695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSMB7	NM_002799	exon4	c.C331G	p.L111V	TGGAGAGGGAGTG	.	109.0	54.0	85.0	0.0	.	90
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113785076	113785076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	QTRTD1	NM_001256835	exon3	c.G238A	p.A80T	TACAGAGCAGAAC	.	59.0	27.0	50.0	0.0	.	91
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11348447	11348447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ROCK2	NM_004850	exon19	c.A2330T	p.E777V	AGGAGCTCATTTA	.	49.0	18.0	38.0	0.0	.	546
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51173435	51173435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SALL1	NM_002968	exon2	c.A2698G	p.N900D	AATCATTGGTCAG	.	65.0	25.0	67.0	0.0	.	98
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101058948	101058948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SENP7	NM_020654	exon16	c.T2348A	p.F783Y	AGGTAAAAATCAA	.	293.0	116.0	258.0	0.0	.	661
SETD2	29072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47164905	47164905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SETD2	NM_014159	exon3	c.T1221C	p.S407S	AGACCTAGAGTGA	.	110.0	56.0	109.0	2.0	.	1273
SIRPB1	10326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1551500	1551500	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SIRPB1	NM_006065	exon4	c.C1035G	p.A345A	CTCCAGGGCATAG	.	107.0	34.0	70.0	1.0	.	91
SLC14A2	8170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43223109	43223109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC14A2	NM_001242692	exon10	c.C1139T	p.A380V	TCTGTGCATACAT	.	99.0	41.0	72.0	1.0	.	93
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4544613	4544613	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC1A1	NM_004170	exon2	c.T138C	p.T46T	CTCAACTCTAGAG	.	204.0	51.0	137.0	0.0	.	514
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	33769276	33769276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLFN13	NM_144682	exon5	c.G1228T	p.E410X	GGGACTCTGGAGT	.	43.0	19.0	41.0	0.0	.	91
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	67358566	67358566	+	Missense_Mutation	SNP	G	G	T	rs191612061	by1000genomes	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SMAD3	NM_005902	exon1	c.G74T	p.G25V	AGAACGGGCAGGA	.	89.0	27.0	87.0	0.0	G|0.999;T|0.000	904
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36508355	36508355	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SOCS7	NM_014598	exon1	c.C228T	p.V76V	GACAGTCGGTGGG	.	38.0	12.0	28.0	0.0	.	227
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231090583	231090583	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP140	NM_007237	exon1	c.G24A	p.G8G	GCAGGGGCAGATG	.	100.0	38.0	72.0	1.0	.	90
SP3	6670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	174820558	174820558	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP3	NM_003111	exon4	c.682delA	p.I228fs	GTGGTATGAGATT	.	63.0	32.0	72.0	0.0	.	227
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381480	47381480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SPI1	NM_001080547	exon3	c.A257G	p.Y86C	TGGCGGTAGAGCT	.	28.0	11.0	25.0	0.0	.	226
SSMEM1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129856208	129856208	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_145268	exon3	c.G633A	p.A211A	GTTGGCGCACCAT	.	381.0	106.0	219.0	2.0	.	.
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67953257	67953257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SUV420H1	NM_017635	exon3	c.T299G	p.M100R	GTATTCATTTTGT	.	98.0	38.0	70.0	0.0	.	228
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20876328	20876328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TEP1	NM_007110	exon2	c.A271C	p.M91L	TCTCCATGGTCTT	.	182.0	75.0	173.0	0.0	.	95
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5352548	5352548	+	Silent	SNP	T	T	G	rs112615228	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TNRC18	NM_001080495	exon27	c.A7974C	p.S2658S	GGAGGATGAGGAC	.	30.0	13.0	32.0	0.0	T|0.500;A|0.500	46
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23545860	23545860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TRA2A	NM_013293	exon6	c.G667C	p.G223R	CGCCGCCGCCTCC	.	116.0	40.0	76.0	0.0	.	91
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768705	31768705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TSHZ3	NM_020856	exon2	c.G1994A	p.R665H	TGGCTGCGGAAGC	.	44.0	18.0	65.0	0.0	.	232
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231096999	231096999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTC13	NM_001122835	exon2	c.T322G	p.S108A	AGGGTGATGATCC	.	106.0	27.0	67.0	0.0	.	92
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	33361419	33361419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001265581	exon5	c.T962A	p.I321N	TCCAGGATGGGGA	.	47.0	39.0	87.0	0.0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484523	179484523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTN	NM_001267550	exon250	c.G46521T	p.K15507N	TTCCACCTTATCT	.	77.0	40.0	62.0	0.0	.	636
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5442825	5442825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TUBAL3	NM_024803	exon2	c.T229A	p.L77M	GCTCCAAGTCCAC	.	71.0	30.0	67.0	0.0	.	91
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54285333	54285333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TXNL1	NM_004786	exon4	c.A394G	p.K132E	CAGCTTTGTTAAT	.	51.0	23.0	47.0	0.0	.	90
TYW1B	441250	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	72277659	72277659	+	RNA	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	GTATACCTTGGTG	.	133.0	37.0	108.0	0.0	.	.
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118245829	118245829	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBE4A	NM_004788	exon9	c.A1356G	p.L452L	GAAGCTATGCCAG	.	111.0	53.0	91.0	0.0	.	229
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu	37	3	196159225	196159226	+	In_Frame_Ins	INS	-	-	CCC	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBXN7	NM_015562	exon1	c.46_47insGGG	p.L16delinsGL	GAATTAACCCCTT	.	151.0	57.0	154.0	0.0	.	71
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75276369	75276369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP54	NM_152586	exon18	c.C3815G	p.S1272C	AGCTGAGAATCAC	.	70.0	24.0	57.0	0.0	.	721
USP6	9098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5072174	5072174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP6	NM_004505	exon27	c.A3341G	p.D1114G	CACGAGACCCGGC	.	188.0	88.0	218.0	1.0	.	662
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102239757	102239757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	WNT8B	NM_003393	exon3	c.G229A	p.G77R	CATGGTGGGCTTC	.	36.0	16.0	41.0	0.0	.	625
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75230510	75230510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	YLPM1	NM_019589	exon1	c.G318T	p.P106P	GCCACCGATGCCC	.	45.0	15.0	38.0	0.0	.	71
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595723	129595723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB43	NM_001135776	exon2	c.A935T	p.D312V	ATTATGATGAGCA	.	56.0	18.0	51.0	0.0	.	91
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37440805	37440805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB5	NM_014872	exon2	c.C1744A	p.P582T	ACTGTGGAGGGCC	.	71.0	36.0	70.0	0.0	.	92
ZDHHC20	253832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	21974596	21974597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC20	NM_153251	exon7	c.510_511insT	p.F170fs	CAGGAAGAATTTG	.	405.0	177.0	332.0	0.0	.	23
ZDHHC23	254887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113667674	113667674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC23	NM_173570	exon2	c.C25T	p.P9S	ATGAAGCCTGTGA	.	65.0	29.0	48.0	0.0	.	92
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	72017346	72017346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZFC3H1	NM_144982	exon24	c.T4538G	p.V1513G	TCAGCTACTATTC	.	96.0	48.0	61.0	0.0	.	138
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340049	62340049	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZGPAT	NM_032527	exon2	c.G117A	p.L39L	CCAGCTGCAGGGG	.	41.0	15.0	43.0	0.0	.	90
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306248	43306248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF318	NM_014345	exon10	c.A5488C	p.M1830L	CAATCATTAGCAA	.	272.0	61.0	136.0	0.0	.	157
ZNF331	55422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080362	54080362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF331	NM_001253801	exon5	c.G548T	p.G183V	ATACTGGGGAGAA	.	100.0	51.0	113.0	0.0	.	663
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57839129	57839129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF543	NM_213598	exon4	c.A299G	p.E100G	TGCCTGAGGAAGT	.	220.0	46.0	239.0	0.0	.	92
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57529339	57529339	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF716	NM_001159279	exon4	c.T1172A	p.L391X	TTAGCTTACCCTC	.	73.0	33.0	78.0	0.0	.	24
ZNF7	7553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	146067786	146067786	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF7	NM_003416	exon5	c.C1294T	p.Q432X	CAGCATCAGCTGA	.	59.0	20.0	36.0	0.0	.	94
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58549467	58549467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZSCAN1	NM_182572	exon3	c.G263A	p.G88D	TCCTGGGCGCGCT	.	37.0	21.0	19.0	0.0	.	92
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116972883	116972883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZUFSP	NM_145062	exon7	c.A1168T	p.I390F	TTGGAATGCAAGG	.	51.0	46.0	29.0	0.0	.	69
C12orf68	387856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48578199	48578200	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.Q99K	GCCCCGCCAGGGC	.	25.0	13.0	19.0	0.0	.	.
ATP8A2	51761	hgsc.bcm.edu;bcgsc.ca	37	13	26273415	26273416	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.L773F	GTACGCGCTCTCC	.	56.0	18.0	68.0	0.0	.	.
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186839647	186839648	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.ML38II	TGACATGCGTAAG	.	113.0	30.0	57.0	0.0	.	.
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151687721	151687722	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.R160L	CTGTGGCCGTGGA	.	54.0	46.0	95.0	0.0	.	.
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	7103697	7103698	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.C813D	ATCTTCTGCAGAC	.	106.0	15.0	63.0	0.0	.	.