Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79094718	79094718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AATK	NM_001080395	exon11	c.G3018C	p.E1006D	GGTGGCCTCGGCC	.	71.0	21.0	64.0	0.0	.	933
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160197285	160197285	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ACAT2	NM_005891	exon6	c.C738T	p.V246V	AACAGTCACCCCA	.	62.0	15.0	90.0	0.0	.	91
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39506032	39506032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ADAM18	NM_014237	exon12	c.T1216A	p.C406S	TGTGACTGTGGTA	.	65.0	34.0	134.0	1.0	.	228
AGPAT1	10554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32138234	32138234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AGPAT1	NM_006411	exon4	c.T478C	p.S160P	CCTCAGACATGAC	.	37.0	15.0	39.0	0.0	.	90
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	427999	427999	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AHRR	NM_020731	exon9	c.G852A	p.P284P	CCCGCCGCGGCTG	.	130.0	20.0	93.0	0.0	.	225
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106967133	106967133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AIM1	NM_001624	exon2	c.T826C	p.F276L	TCCTTATTTGAAA	.	100.0	35.0	138.0	0.0	.	139
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34005903	34005903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AMACR	NM_014324	exon2	c.T349G	p.C117G	ACCGGCAGAAGCT	.	32.0	5.0	37.0	0.0	.	90
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	112550033	112550033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANAPC1	NM_022662	exon38	c.C4618T	p.R1540C	AGAAGCGACAAAG	.	389.0	125.0	521.0	1.0	.	228
ANKRD36B	57730	bcgsc.ca;mdanderson.org	37	2	98154646	98154646	+	Missense_Mutation	SNP	C	C	G	rs2258816	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_025190	exon32	c.G2074C	p.G692R	ATTTCCCACCGCC	.	196.0	41.0	244.0	1.0	.	.
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	428795	428795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANO9	NM_001012302	exon12	c.C947T	p.P316L	TAGTCGGGGCAGT	.	42.0	12.0	60.0	0.0	.	227
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	77298849	77298849	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AP3B1	NM_003664	exon27	c.A3162G	p.S1054S	CATCAATGACCCA	.	42.0	17.0	39.0	0.0	.	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	21252519	21252519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	APOB	NM_000384	exon12	c.A1609G	p.K537E	TGTCTTTAGGCTC	.	36.0	13.0	50.0	0.0	.	175
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10401666	10401666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ATP2B2	NM_001001331	exon13	c.A1801T	p.T601S	TGAAGGTGTACAC	.	30.0	11.0	33.0	0.0	.	95
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100608970	100608970	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	BTK	NM_000061	exon17	c.C1638G	p.V546V	ATCCAGGACATAC	.	57.0	16.0	58.0	0.0	.	1395
C18orf8	29919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21110006	21110006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C18orf8	NM_013326	exon17	c.A1509G	p.E503E	ACATGAACTTGTT	.	90.0	35.0	112.0	1.0	.	91
C1orf65	164127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568587	223568587	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1orf65	NM_152610	exon1	c.T1770C	p.P590P	GCTCCCTCAGGCC	.	222.0	53.0	195.0	1.0	.	91
C1QC	714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22970634	22970634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1QC	NM_001114101	exon2	c.G118A	p.G40S	ATGCCCGGCCTGC	.	99.0	37.0	115.0	0.0	.	90
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44137245	44137245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CAPN11	NM_007058	exon3	c.A316G	p.N106D	GTGCAGAACATCT	.	118.0	39.0	151.0	0.0	.	136
CASP10	843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202082364	202082364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CASP10	NM_032977	exon10	c.G1469C	p.R490T	GTCGAAGAGTGGA	.	162.0	53.0	197.0	0.0	.	1086
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77808750	77808751	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CBX4	NM_003655	exon5	c.691_692insC	p.N231fs	TTCCGTTGGGGGG	.	123.0	14.0	120.0	0.0	.	228
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	15777776	15777776	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_173550	exon19	c.A2850G	p.V950V	TAAAGTAAACACA	.	62.0	29.0	72.0	0.0	.	.
CD80	941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119263583	119263583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CD80	NM_005191	exon3	c.T232A	p.S78T	CCCCAGACATCAT	.	93.0	34.0	132.0	0.0	.	92
CFB	629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31915210	31915210	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CFB	NM_001710	exon4	c.C570T	p.H190H	CTACCACTGCAGC	.	35.0	15.0	50.0	0.0	.	91
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17342344	17342344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CNTLN	NM_017738	exon12	c.G1788T	p.K596N	AATAAAGAGAGCA	.	140.0	45.0	193.0	0.0	.	91
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36564429	36564429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	COL8A2	NM_005202	exon2	c.G853A	p.A285T	CTGCTGCCCCTGG	.	57.0	17.0	62.0	0.0	.	90
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008954	88008954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CPXCR1	NM_001184771	exon3	c.G539A	p.C180Y	TAGCATGTCTTTA	.	142.0	54.0	183.0	0.0	.	133
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34258042	34258042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CSMD2	NM_052896	exon11	c.A1412G	p.Q471R	GTCTTCTGGTCCC	.	113.0	38.0	151.0	0.0	.	103
CWH43	80157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49005828	49005828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CWH43	NM_025087	exon7	c.T879A	p.F293L	CATCTTTACTGCA	.	69.0	9.0	103.0	0.0	.	93
DDR1	780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30861167	30861167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DDR1	NM_001202523	exon10	c.C1368A	p.L456L	CATGCTCTGGCGG	.	23.0	6.0	21.0	0.0	.	1403
DLC1	10395	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	12957573	12957573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DLC1	NM_182643	exon9	c.C2273T	p.P758L	GTAACAGGGCTGG	.	10.0	5.0	27.0	0.0	.	657
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57356458	57356458	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAH12	NM_178504	exon50	c.G7833A	p.T2611T	AAGACCCGTGGGA	.	67.0	23.0	74.0	0.0	.	47
DNAJC5B	85479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	66992665	66992665	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAJC5B	NM_033105	exon5	c.G387T	p.L129L	CTGCCTGTGCTGC	.	113.0	26.0	84.0	1.0	.	226
DOK4	55715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57509446	57509446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DOK4	NM_018110	exon4	c.C261G	p.D87E	TGCCGAGTCATCA	.	18.0	5.0	19.0	0.0	.	227
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7576541	7576541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DSP	NM_004415	exon19	c.A2645G	p.E882G	ACCTGGAGAAACA	.	85.0	30.0	103.0	0.0	.	518
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	158135124	158135124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EBF1	NM_024007	exon15	c.G1607A	p.S536N	GAGGAGCTGCTGC	.	25.0	12.0	72.0	0.0	.	92
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2885054	2885054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EMILIN2	NM_032048	exon3	c.A350G	p.D117G	GGGGAGATTGCCA	.	59.0	22.0	76.0	0.0	.	93
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22915685	22915685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EPHA8	NM_020526	exon5	c.C1301T	p.T434I	ACATCACCACGAA	.	99.0	28.0	104.0	0.0	.	1380
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20802201	20802219	+	Frame_Shift_Del	DEL	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ERI2	NM_080663	exon9	c.768_786del	p.256_262del	ATGCTGGTCCCCT	.	277.0	48.0	379.0	0.0	.	153
FAM22G	441457	bcgsc.ca;mdanderson.org	37	9	99701238	99701238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FAM22G	NM_001170741	exon7	c.C2033A	p.A678D	CTCCTGCCAGCAA	.	151.0	37.0	203.0	0.0	.	69
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	162431553	162431553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FSTL5	NM_020116	exon11	c.G1336T	p.E446X	TACCTTCTTCTCT	.	308.0	103.0	346.0	0.0	.	158
FZD10	11211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130648395	130648395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FZD10	NM_007197	exon1	c.G908A	p.G303E	AGGAGGGACTGGA	.	18.0	6.0	26.0	0.0	.	658
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120580319	120580320	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GCN1L1	NM_006836	exon44	c.5821_5822insT	p.K1941_R1942delinsX	TTCTCTTATCTGC	.	90.0	36.0	87.0	0.0	.	94
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14027290	14027290	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GEMIN8	NM_001042480	exon5	c.473-2A>T	.	CCGCCCTGAGAAC	.	81.0	25.0	103.0	0.0	.	130
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353689	182353689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GLUL	NM_001033056	exon7	c.A973G	p.I325V	GGGGAATGCGTAT	.	95.0	41.0	83.0	0.0	.	90
GRID1	2894	broad.mit.edu;mdanderson.org	37	10	87362151	87362151	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRID1	NM_017551	exon16	c.C2909A	p.S970X	TTGGGTGACCTGT	.	83.0	17.0	147.0	1.0	.	142
GRIK3	2899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37270816	37270816	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRIK3	NM_000831	exon15	c.C2337A	p.I779I	GATGGTGATCTTG	.	34.0	5.0	59.0	0.0	.	158
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025434	71025434	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HKDC1	NM_025130	exon17	c.C2466T	p.C822C	GGTGTGCGGAGCC	.	80.0	38.0	87.0	0.0	.	95
HNRNPC	3183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21681136	21681136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HNRNPC	NM_031314	exon6	c.C545T	p.S182F	TTGGAAGATCCCC	.	64.0	26.0	110.0	1.0	.	90
HOXA5	3202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27183054	27183054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HOXA5	NM_019102	exon1	c.G173A	p.R58H	CCCGAGCGGCCGA	.	33.0	7.0	38.0	1.0	.	514
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141284	114141284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HTR2C	NM_000868	exon6	c.C683G	p.T228R	CGCTGACGATTAT	.	113.0	42.0	164.0	0.0	.	133
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15468865	15468865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JARID2	NM_004973	exon5	c.A586C	p.K196Q	GACGTCAAAACAG	.	82.0	29.0	102.0	0.0	.	228
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75227318	75227318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JPH1	NM_020647	exon2	c.G917C	p.G306A	CACTCCCCTTCAT	.	176.0	34.0	133.0	0.0	.	91
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965315	48965315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KCNJ14	NM_013348	exon2	c.G334A	p.G112S	CTCATTGCCTCGC	.	43.0	26.0	22.0	0.0	.	91
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138655844	138655844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KIAA1244	NM_020340	exon33	c.G5861C	p.G1954A	CCGGGGGCTTCTC	.	46.0	12.0	50.0	0.0	.	228
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464367	39464367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_001146182	exon1	c.C1139G	p.P380R	GAACTGGGTATGT	.	115.0	24.0	119.0	0.0	.	.
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31669449	31669449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	LIMK2	NM_005569	exon14	c.G1570C	p.D524H	AGCTATGATGAGA	.	54.0	14.0	62.0	0.0	.	548
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51639742	51639742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MAGED1	NM_001005333	exon5	c.G1159A	p.A387T	CCACCAGCCTGGC	.	113.0	48.0	158.0	0.0	.	133
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168833394	168833394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MECOM	NM_004991	exon8	c.C2266G	p.P756A	GGACTGGAGTCAA	.	68.0	26.0	77.0	0.0	.	853
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41961695	41961695	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MGA	NM_001080541	exon2	c.G603A	p.L201L	TTACCTGCCGAGG	.	90.0	23.0	92.0	0.0	.	522
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222802341	222802341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MIA3	NM_198551	exon4	c.C1779G	p.D593E	CAGAGACAGTGTG	.	131.0	23.0	98.0	0.0	.	98
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49933287	49933287	+	Silent	SNP	G	G	A	rs201143544		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MST1R	NM_002447	exon12	c.C2823T	p.I941I	ACCCAGGATATGA	.	44.0	12.0	39.0	0.0	G|0.999;A|0.001	1406
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52521421	52521421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MYO5C	NM_018728	exon25	c.A3116G	p.E1039G	ATCTTCTCATCCT	.	37.0	14.0	62.0	0.0	.	145
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33684417	33684417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	NPAS3	NM_001164749	exon3	c.G170T	p.R57L	AATCCCGAGATGC	.	95.0	26.0	93.0	0.0	.	93
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549068	158549068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR10X1	NM_001004477	exon1	c.A622G	p.S208G	GGTTACTGTCTAT	.	273.0	57.0	161.0	0.0	.	69
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487416	248487416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR2M7	NM_001004691	exon1	c.G455C	p.G152A	GTAGAGCCCAGGA	.	136.0	19.0	117.0	1.0	.	70
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587833	55587833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR5D18	NM_001001952	exon1	c.C728T	p.A243V	CCTGTGCCTCCCA	.	70.0	20.0	87.0	0.0	.	71
OR7G1	125962	broad.mit.edu;bcgsc.ca	37	19	9225688	9225688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR7G1	NM_001005192	exon1	c.T752C	p.F251S	CCATAGAACAAGG	.	67.0	5.0	69.0	0.0	.	70
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57268479	57268479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OTX2	NM_001270525	exon3	c.T868A	p.S290T	ACGAGGATGTCTG	.	72.0	33.0	101.0	0.0	.	205
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140530762	140530762	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PCDHB6	NM_018939	exon1	c.G924A	p.E308E	TTTTGAGGAAATT	.	46.0	7.0	91.0	0.0	.	91
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24513001	24513001	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PDK3	NM_001142386	exon2	c.248+1G>C	.	GAGTTGGTAAGTA	.	76.0	24.0	110.0	0.0	.	377
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	208219318	208219318	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PLXNA2	NM_025179	exon18	c.3400delG	p.D1134fs	TGGTGTCGTTGTA	.	170.0	132.0	198.0	0.0	.	92
POTEH	23784	hgsc.bcm.edu;broad.mit.edu	37	22	16279260	16279260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	POTEH	NM_001136213	exon4	c.963delA	p.K321fs	TTGCTGTTTTTGC	.	389.0	41.0	387.0	0.0	.	1
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109241956	109241956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PRPF38B	NM_018061	exon6	c.C955G	p.R319G	AGATCCCGAAGTA	.	238.0	49.0	159.0	0.0	.	90
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113949983	113949983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PSD4	NM_012455	exon6	c.C1655T	p.S552F	TGAACTCTTCTTG	.	45.0	11.0	62.0	0.0	.	229
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56468670	56468670	+	RNA	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	.	TCTCTTTAGACCC	.	59.0	16.0	80.0	0.0	.	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237875069	237875069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	RYR2	NM_001035	exon71	c.T10255G	p.F3419V	CAGAACTTCGTTG	.	208.0	18.0	185.0	0.0	.	158
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77057677	77057677	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SCAPER	NM_020843	exon13	c.1613+1G>T	.	GCCAGACCTTTTA	.	95.0	26.0	125.0	0.0	.	137
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	2954826	2954826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SERPINB6	NM_001271823	exon4	c.G487A	p.G163S	TTTCACCTTCTGT	.	43.0	12.0	45.0	0.0	.	226
SLC10A3	8273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153715955	153715955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC10A3	NM_001142392	exon3	c.C1325A	p.A442D	TAGTCAGCTTGAA	.	124.0	37.0	130.0	0.0	.	132
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19560719	19560719	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC24A3	NM_020689	exon4	c.423+1G>C	.	TGTGAGGTACGTG	.	105.0	58.0	101.0	0.0	.	91
SLC29A4	222962	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5331370	5331370	+	Missense_Mutation	SNP	C	C	A	rs140428222	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC29A4	NM_153247	exon5	c.C462A	p.D154E	CTGCGACGTGTGG	.	58.0	25.0	68.0	1.0	C|1.000;T|0.000	515
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32396397	32396397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC30A6	NM_001193513	exon2	c.T45A	p.F15L	CTTTTTTGGCAAG	.	89.0	33.0	100.0	0.0	.	90
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42273946	42273946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SREBF2	NM_004599	exon9	c.G1580T	p.G527V	TCTTAGGTTCTGG	.	34.0	14.0	45.0	0.0	.	154
SYNM	23336	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	99669633	99669633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYNM	.	.	.	.	AAGGAATCTATTT	.	48.0	16.0	57.0	0.0	.	26
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	7273526	7273526	+	Silent	SNP	C	C	T	rs146068689	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYT9	NM_175733	exon1	c.C109T	p.L37L	TACCACCTGCGGG	.	57.0	23.0	52.0	0.0	C|1.000;G|0.000	155
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48895554	48895554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TFE3	NM_006521	exon5	c.G866A	p.G289E	TGCAGTCCTGTGG	.	130.0	46.0	144.0	0.0	.	658
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90035650	90035650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TIGD2	NM_145715	exon1	c.C1525T	p.L509F	AGGAGGCTTCGGA	.	80.0	34.0	110.0	0.0	.	90
TLN1	7094	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35703574	35703574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLN1	NM_006289	exon48	c.A6457T	p.I2153L	GCCGTATGTGTTC	.	35.0	5.0	67.0	0.0	.	609
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937389	12937389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLR8	NM_138636	exon2	c.A230G	p.H77R	TCACACACATAAC	.	306.0	99.0	394.0	0.0	.	629
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	TP53,NS,carcinoma,+1	TP53	NM_000546	exon6	c.G644A	p.S215N	ACCACACTATGTC	.	51.0	29.0	108.0	1.0	.	70225
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3446875	3446875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TRPV3	NM_001258205	exon5	c.A359C	p.K120T	CGCTTCTTCAGCC	.	26.0	20.0	60.0	0.0	.	94
TSPEAR	54084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45941865	45941865	+	Missense_Mutation	SNP	G	G	C	rs201105425	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TSPEAR	NM_144991	exon9	c.C1467G	p.F489L	CACCAGGAACGAG	.	123.0	43.0	119.0	0.0	G|0.999;A|0.001	244
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179615005	179615005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TTN	NM_133379	exon46	c.T12122A	p.V4041D	GCTTTGACATCAT	.	84.0	31.0	110.0	0.0	.	636
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68543400	68543400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBA6	NM_018227	exon6	c.T394C	p.Y132H	GAACGTATGGATT	.	55.0	6.0	82.0	0.0	.	90
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616615	25616615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBE3A	NM_000462	exon7	c.A715G	p.I239V	TTCTAATGGCATC	.	69.0	29.0	59.0	0.0	.	660
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118971720	118971720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UPF3B	NM_080632	exon10	c.G1302C	p.K434N	CAGCACCTTGTTT	.	55.0	19.0	56.0	0.0	.	133
VASN	114990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4431099	4431099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VASN	NM_138440	exon2	c.G221T	p.G74V	TTGCCGGCCTGCC	.	49.0	12.0	73.0	1.0	.	68
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6125791	6125791	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VWF	NM_000552	exon30	c.G5202A	p.Q1734Q	TCCATACTGCAGC	.	111.0	28.0	102.0	0.0	.	163
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	31030549	31030549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	WRN	NM_000553	exon35	c.G4230A	p.W1410X	TGTGTGGTTTGCC	.	35.0	16.0	80.0	0.0	.	1036
XCL2	6846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168510343	168510343	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	XCL2	NM_003175	exon3	c.T192C	p.R64R	TAGGCCACGTTTG	.	169.0	22.0	107.0	0.0	.	91
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64167242	64167242	+	Missense_Mutation	SNP	C	C	A	rs199803183	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF107	NM_016220	exon7	c.C560A	p.P187H	AGAAACCCAACAA	.	73.0	27.0	63.0	0.0	C|0.999;T|0.001	69
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22000753	22000753	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF43	NM_001256653	exon3	c.C193T	p.L65L	GCTCCAGACAGGT	.	52.0	34.0	61.0	0.0	.	154
ZNF615	284370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52506956	52506956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF615	NM_001199324	exon3	c.G9C	p.Q3H	CTGGGCCTGCATC	.	66.0	10.0	62.0	0.0	.	95
ZNF678	339500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227843314	227843314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF678	NM_178549	exon4	c.C1528A	p.H510N	AGAATTCATACTG	.	79.0	16.0	66.0	0.0	.	91
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44512235	44512235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZSWIM1	NM_080603	exon2	c.C1004T	p.T335I	TCTGCACAGGGCC	.	96.0	51.0	77.0	0.0	.	91
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58207024	58207025	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	p.V201L	ATCCCACCACAAA	.	94.0	44.0	106.0	0.0	.	.