Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94564351	94564351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ABCA4	NM_000350	exon6	c.T767C	p.V256A	CTTACCACACGGA	.	55.0	21.0	56.0	0.0	.	162
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	4228867	4228867	+	Nonsense_Mutation	SNP	G	G	T	rs140080149	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ADRA1D	NM_000678	exon1	c.C738A	p.C246X	GATACCGCAGAAG	.	86.0	35.0	97.0	0.0	G|0.996;A|0.004	522
ANKRD13B	124930	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	27940598	27940598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANKRD13B	NM_152345	exon15	c.T1879C	p.X627Q	GAGCAGTAGCGCC	.	20.0	8.0	24.0	0.0	.	90
ANXA10	11199	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169108554	169108554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANXA10	NM_007193	exon12	c.C944T	p.A315V	TGCTTGCCATCTG	.	384.0	43.0	434.0	1.0	.	90
ARHGEF10	9639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	1871942	1871942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARHGEF10	NM_014629	exon21	c.C2390T	p.S797F	GCAGATCTGGGCG	.	110.0	10.0	137.0	0.0	.	272
ARL14	80117	broad.mit.edu;mdanderson.org	37	3	160395171	160395171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARL14	NM_025047	exon1	c.C37T	p.Q13X	ACCAAACAAGCCC	.	215.0	12.0	223.0	1.0	.	90
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	160206490	160206490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	BAZ2B	NM_013450	exon28	c.C4592T	p.T1531I	GAACCAGTATTAA	.	134.0	11.0	135.0	0.0	.	94
C2orf47	79568	broad.mit.edu;mdanderson.org	37	2	200820961	200820961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C2orf47	NM_024520	exon2	c.G440T	p.G147V	CCGAGGGAGCGAA	.	18.0	4.0	32.0	0.0	.	90
C5orf60	285679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179069453	179069453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001142306	exon5	c.C721T	p.R241C	GAAAGCGGGACCC	.	55.0	27.0	70.0	0.0	.	.
C8B	732	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	57406665	57406665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C8B	NM_000066	exon9	c.A1255G	p.M419V	CCACCATGGTGTC	.	62.0	26.0	41.0	1.0	.	92
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46782348	46782348	+	Silent	SNP	G	G	A	rs147425309		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CELSR1	NM_014246	exon19	c.C6690T	p.N2230N	CCGCACGTTGCGT	.	97.0	57.0	82.0	1.0	G|1.000;A|0.000	525
CHMP7	91782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23104433	23104433	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHMP7	NM_152272	exon2	c.G225A	p.R75R	TCTGCGGGACTTG	.	28.0	12.0	58.0	1.0	.	90
CHST13	166012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126260674	126260674	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHST13	NM_152889	exon3	c.G279A	p.P93P	ACAGCCGGAGGAC	.	49.0	15.0	50.0	0.0	.	90
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7287981	7287981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CLSTN3	NM_014718	exon4	c.C442G	p.R148G	GTGGAACGGCTGT	.	103.0	39.0	98.0	2.0	.	153
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38301745	38301745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CYP1B1	NM_000104	exon2	c.C787T	p.Q263X	TGAGCTGCTCGAA	.	194.0	11.0	204.0	0.0	.	515
DDX19B	11269	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70363839	70363839	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DDX19B	NM_007242	exon9	c.G891A	p.L297L	CAAACTGAAGCGT	.	115.0	30.0	148.0	1.0	.	226
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75359658	75359658	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DLST	NM_001933	exon8	c.C564T	p.P188P	GGTGCCCTCGCCC	.	78.0	8.0	62.0	0.0	.	227
EEF1G	1937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62334990	62334990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001404	exon6	c.C533G	p.P178R	AAAGAAGGCTCTA	.	53.0	10.0	74.0	1.0	.	.
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31845450	31845450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EIF4ENIF1	NM_019843	exon12	c.T1652G	p.L551W	GGCTCCAAGCTCC	.	72.0	24.0	77.0	0.0	.	91
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41574846	41574846	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EP300	NM_001429	exon31	c.T7131C	p.A2377A	GCTTGCTAGCAAT	.	63.0	22.0	87.0	0.0	.	2011
EXOSC7	23016	broad.mit.edu;bcgsc.ca	37	3	45048999	45048999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EXOSC7	NM_015004	exon7	c.G703T	p.V235F	AAGGGAGTTGTGA	.	66.0	5.0	79.0	0.0	.	90
FAM208B	54906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5788372	5788372	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_017782	exon15	c.C2988T	p.Y996Y	TGTGTACGGCACC	.	51.0	5.0	82.0	0.0	.	.
FAM210A	125228	broad.mit.edu;ucsc.edu	37	18	13666480	13666480	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001098801	exon5	c.A818G	p.X273X	GCACCTTATTCCA	.	92.0	38.0	113.0	1.0	.	.
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45658377	45658377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	FANCM	NM_020937	exon20	c.G5152A	p.V1718M	TCCAAGGTGCGTT	.	176.0	77.0	174.0	0.0	.	569
GLT1D1	144423	broad.mit.edu;bcgsc.ca	37	12	129360597	129360597	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GLT1D1	NM_144669	exon2	c.G207A	p.R69R	AGGCAGGCTTTTG	.	53.0	5.0	46.0	0.0	.	90
GPR56	9289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57685514	57685514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GPR56	NM_001145773	exon3	c.G482C	p.S161T	CCGCCAGCTTCAC	.	55.0	20.0	55.0	1.0	.	90
HECTD4	283450	ucsc.edu;bcgsc.ca	37	12	112622701	112622701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001109662	exon61	c.G9667C	p.A3223P	TGAGTGCGCGGTG	.	59.0	28.0	61.0	2.0	.	.
HEPACAM	220296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124794662	124794662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HEPACAM	NM_152722	exon2	c.C389G	p.T130S	GTGAAGGTGTCGT	.	34.0	13.0	64.0	0.0	.	91
HYOU1	10525	broad.mit.edu;bcgsc.ca	37	11	118925964	118925964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HYOU1	NM_006389	exon5	c.G352A	p.A118T	AGCGGGCCTGGTA	.	78.0	5.0	111.0	0.0	.	90
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81593848	81593848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IL16	NM_001172128	exon15	c.T3313G	p.L1105V	GCAACATTAAAGG	.	63.0	19.0	56.0	0.0	.	653
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	2751518	2751518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IRX2	NM_001134222	exon1	c.C10A	p.P4T	CCTGCGGGTAGGA	.	23.0	10.0	32.0	0.0	.	226
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	31414896	31414896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ITGAD	NM_005353	exon7	c.C634T	p.Q212X	AGCCAGCAGAGCC	.	76.0	27.0	62.0	0.0	.	226
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6985309	6985309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LAMA1	NM_005559	exon39	c.A5587T	p.N1863Y	CTGCGTTCCTTTG	.	71.0	23.0	77.0	1.0	.	149
LCE4A	199834	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152681721	152681721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LCE4A	NM_178356	exon1	c.G170A	p.G57D	GAGGTGGCTGCTG	.	118.0	32.0	82.0	1.0	.	90
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55148029	55148029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LILRB1	NM_001081637	exon14	c.C1738T	p.P580S	TCTCCTCCTTCCC	.	122.0	10.0	134.0	0.0	.	137
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75648383	75648383	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MAGEE1	NM_020932	exon1	c.G60A	p.A20A	TACTGCGCACAAC	.	138.0	15.0	152.0	0.0	.	262
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18159634	18159634	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MRGPRX3	NM_054031	exon3	c.G885T	p.L295L	GGCTCTGCAGGAC	.	53.0	19.0	51.0	0.0	.	92
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186524	50186524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NCKAP5L	NM_001037806	exon11	c.C3586T	p.P1196S	AGGCTGGCATGCT	.	96.0	29.0	57.0	0.0	.	68
NIPBL	25836	broad.mit.edu;ucsc.edu	37	5	36976361	36976361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NIPBL	NM_015384	exon9	c.C1352T	p.S451F	AGACTTCTGTGGT	.	52.0	13.0	55.0	2.0	.	293
NOA1	84273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57842963	57842963	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_032313	exon1	c.G789A	p.R263R	CCGCAGCCTCTGC	.	64.0	10.0	84.0	0.0	.	.
NOB1	28987	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69776359	69776359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NOB1	NM_014062	exon9	c.C1115T	p.P372L	ACAAAGGGTGACA	.	80.0	6.0	117.0	1.0	.	90
NUP93	9688	broad.mit.edu;mdanderson.org	37	16	56870513	56870513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NUP93	NM_014669	exon17	c.C1783T	p.P595S	TGTCAGCCTGGAG	.	33.0	4.0	47.0	0.0	.	205
OMP	4975	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76814313	76814313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_006189	exon1	c.T428C	p.V143A	TCCTCGTCACCTT	.	43.0	12.0	48.0	1.0	.	.
OR5T2	219464	ucsc.edu;bcgsc.ca	37	11	56000549	56000549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR5T2	NM_001004746	exon1	c.T113C	p.L38P	AAATCTAGAACAA	.	86.0	37.0	103.0	2.0	.	70
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676932	123676932	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR6M1	NM_001005325	exon1	c.C126A	p.T42T	GATGATGGTGATG	.	100.0	15.0	129.0	0.0	.	70
OS9	10956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58087958	58087958	+	Missense_Mutation	SNP	C	C	T	rs150848860	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OS9	NM_001261423	exon1	c.C14T	p.T5M	CGGAAACGCTGCT	.	124.0	32.0	80.0	0.0	C|0.997;G|0.003	493
PDCD7	10081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65411134	65411134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PDCD7	NM_005707	exon5	c.G1379A	p.G460D	AAGTTGCCTTTGG	.	80.0	37.0	73.0	1.0	.	227
PHACTR3	116154	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	58349512	58349512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PHACTR3	NM_080672	exon7	c.G1141A	p.D381N	TATCAGGACGAGG	.	54.0	7.0	76.0	1.0	.	93
PLCH1	23007	broad.mit.edu;bcgsc.ca	37	3	155200721	155200721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PLCH1	NM_001130960	exon23	c.G3118A	p.G1040R	TGTCCCCTTGGCT	.	106.0	7.0	104.0	1.0	.	151
PNMAL1	55228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46973078	46973078	+	Silent	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PNMAL1	NM_018215	exon2	c.T1215A	p.P405P	GCCCCGAGGGGCC	.	53.0	20.0	53.0	1.0	.	68
PPP1R10	5514	broad.mit.edu;bcgsc.ca	37	6	30574619	30574619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PPP1R10	NM_002714	exon7	c.G397A	p.A133T	CTGAGGCCAATTT	.	170.0	11.0	196.0	1.0	.	660
PRICKLE2	166336	broad.mit.edu;bcgsc.ca	37	3	64085071	64085071	+	Missense_Mutation	SNP	T	T	C	rs148689951	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRICKLE2	NM_198859	exon8	c.A2191G	p.S731G	GGAAGCTCCGCTG	.	76.0	30.0	66.0	1.0	T|0.999;C|0.001	95
PRKDC	5591	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48732069	48732069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRKDC	.	.	.	.	AGAATAATTCTTA	.	163.0	27.0	165.0	1.0	.	1515
PRSS35	167681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84233979	84233979	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRSS35	NM_153362	exon2	c.G819A	p.L273L	TACCTTGGACTAT	.	56.0	17.0	66.0	1.0	.	91
R3HDM4	91300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	900139	900139	+	Silent	SNP	G	G	A	rs199817764		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_138774	exon5	c.C483T	p.P161P	ATAGGCGGGGTCC	.	52.0	27.0	60.0	0.0	G|0.999;A|0.001	.
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22347988	22347988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RAPGEF5	NM_012294	exon5	c.T191A	p.L64H	GGAATGAGAGGCA	.	64.0	19.0	61.0	0.0	.	206
RP1L1	94137	ucsc.edu;bcgsc.ca	37	8	10467415	10467415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RP1L1	NM_178857	exon4	c.G4193T	p.G1398V	GGAAGTCCTTCCT	.	41.0	4.0	49.0	0.0	.	139
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50378093	50378093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SHROOM4	NM_020717	exon4	c.G980A	p.C327Y	CTGAGGCAACAGA	.	101.0	32.0	76.0	0.0	.	131
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66268836	66268836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC16A6	NM_001174166	exon5	c.T449C	p.I150T	GTGACTATGGAAC	.	135.0	32.0	107.0	0.0	.	90
SLC45A3	85414	broad.mit.edu;bcgsc.ca	37	1	205632672	205632672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC45A3	NM_033102	exon3	c.G247A	p.G83S	GGCGGCCATAGCG	.	56.0	4.0	52.0	0.0	.	98
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48497559	48497559	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC9A8	NM_001260491	exon13	c.C1305T	p.I435I	GTTCATCATGTGG	.	113.0	34.0	115.0	0.0	.	91
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47231256	47231256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	STRN4	NM_001039877	exon8	c.C1048G	p.R350G	TGACCCGACGGCT	.	51.0	13.0	50.0	0.0	.	90
TMEM30B	161291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61747549	61747549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TMEM30B	NM_001017970	exon1	c.G317A	p.G106D	ACTGGGCCCTGGA	.	25.0	9.0	14.0	0.0	.	90
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38385769	38385769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_031951	exon4	c.A457T	p.M153L	CTGGCATGGAGAC	.	45.0	22.0	65.0	0.0	.	.
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62594086	62594086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF512B	NM_020713	exon13	c.G2017A	p.G673S	CCACACCCAGCGG	.	69.0	21.0	77.0	0.0	.	90