Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58861838	58861840	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	A1BG	NM_130786	exon6	c.1088_1090del	p.363_364del	CGGAAATGTTGTG	.	196.0	0.0	74.0	0.0	.	90
ABCC3	8714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734480	48734480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ABCC3	NM_003786	exon4	c.G422T	p.W141L	TCTTCTGGTTCCT	.	107.0	13.0	56.0	1.0	.	93
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48734481	48734481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ABCC3	NM_003786	exon4	c.G423T	p.W141C	CTTCTGGTTCCTG	.	107.0	13.0	56.0	0.0	.	93
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156934075	156934075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADAM19	NM_033274	exon10	c.G979A	p.G327R	TGACTCCTCCAGA	.	139.0	32.0	100.0	0.0	.	294
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	77323232	77323232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADAMTS18	NM_199355	exon22	c.G3479A	p.C1160Y	AGCAGACAACTTG	.	56.0	19.0	38.0	0.0	.	1036
ADARB1	104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46604970	46604970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADARB1	NM_015834	exon9	c.G1649A	p.R550Q	GGGAGCGGCTGCT	.	60.0	20.0	42.0	0.0	.	91
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7707833	7707833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ADCY2	NM_020546	exon9	c.C1283A	p.S428Y	ACATTTCTTCTGT	.	94.0	28.0	56.0	0.0	.	97
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147049794	147049794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_024694	exon20	c.C2437A	p.L813I	GGTAAACTCTCTG	.	60.0	16.0	61.0	0.0	.	.
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	147103205	147103205	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_024694	exon30	c.C3912T	p.S1304S	AGACTCCCACACT	.	71.0	9.0	60.0	0.0	.	.
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	76342325	76342325	+	Missense_Mutation	SNP	A	A	G	rs149788789	byfrequency	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	AGGF1	NM_018046	exon6	c.A1024G	p.I342V	AATACTATAGAGT	.	232.0	60.0	149.0	0.0	A|0.999;G|0.001	117
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	105417167	105417167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	AHNAK2	NM_138420	exon7	c.C4621A	p.L1541M	TGCTCAGGTCAGT	.	151.0	13.0	145.0	0.0	.	47
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74285252	74285252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ALB	NM_000477	exon13	c.C1681T	p.P561S	CACAAGCCCAAGG	.	30.0	15.0	30.0	0.0	.	96
ALS2CL	259173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46730917	46730917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ALS2CL	NM_001190707	exon2	c.A14T	p.E5V	GCCTCCTCAGGGT	.	119.0	15.0	66.0	0.0	.	155
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48866816	48866816	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ANP32D	NM_012404	exon1	c.C369T	p.C123C	CACTTGCGAGGTA	.	81.0	28.0	77.0	0.0	.	227
ARAP1	116985	broad.mit.edu;mdanderson.org	37	11	72414044	72414044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARAP1	NM_001040118	exon15	c.C2073A	p.F691L	CCCCGAGAAGCAG	.	26.0	4.0	25.0	0.0	.	91
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144194492	144194492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARHGAP15	NM_018460	exon8	c.C584T	p.S195L	AGGATTCAAGTTG	.	133.0	50.0	90.0	0.0	.	653
ARPC1B	10095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98987539	98987539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ARPC1B	NM_005720	exon5	c.A404G	p.K135R	TTTGCAAGCACAT	.	151.0	30.0	52.0	0.0	.	90
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176905453	176905453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ASTN1	NM_004319	exon15	c.G2431T	p.V811F	ACCGGACCTTCCA	.	97.0	18.0	48.0	0.0	.	319
ATF5	22809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50436140	50436141	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATF5	NM_012068	exon4	c.640_641del	p.214_214del	CAAAAGAAGAGAG	.	111.0	66.0	75.0	0.0	.	92
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96781503	96781503	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATG2B	NM_018036	exon23	c.C3630T	p.S1210S	ATGCCAGCTAAGC	.	146.0	19.0	116.0	0.0	.	93
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42571193	42571193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATP8A1	NM_006095	exon15	c.G1325A	p.C442Y	GGAGAGCAGCCAT	.	340.0	73.0	268.0	0.0	.	92
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142217617	142217617	+	Splice_Site	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ATR	NM_001184	exon33	c.5381-1G>T	.	TTCCATCTGAAAA	.	142.0	42.0	110.0	0.0	.	1139
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13604910	13604910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_148894	exon10	c.A3614G	p.K1205R	ATTTTCTTGGTCA	.	111.0	41.0	69.0	0.0	.	.
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1464728	1464728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BRSK2	NM_001256630	exon8	c.C781T	p.P261S	GCTCTGCCCTTCG	.	46.0	20.0	33.0	0.0	.	333
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu	37	X	79937564	79937576	+	Frame_Shift_Del	DEL	AACTTCATTTGTT	AACTTCATTTGTT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AACTTCATTTGTT	AACTTCATTTGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BRWD3	NM_153252	exon39	c.4415_4427del	p.1472_1476del	GGCTGCAACTTCA	.	83.0	13.0	40.0	0.0	.	134
BTBD16	118663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124090748	124090748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BTBD16	NM_144587	exon12	c.A1061T	p.Q354L	TCGACCAGGTTAC	.	81.0	18.0	62.0	0.0	.	91
BTN1A1	696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26505270	26505270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BTN1A1	NM_001732	exon3	c.G545A	p.G182E	CCAAGGGAGAGAA	.	205.0	88.0	101.0	1.0	.	92
BYSL	705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41889314	41889314	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	BYSL	NM_004053	exon1	c.A14T	p.K5M	AATTCAAGGCGGC	.	119.0	35.0	76.0	0.0	.	90
C11orf71	54494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114271008	114271008	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001271562	exon1	c.A46T	p.R16W	CCACCCTGCTCCT	.	158.0	60.0	87.0	0.0	.	.
C16orf96	342346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	4606659	4606659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001145011	exon1	c.C169T	p.Q57X	ACCTCGCAGGTGG	.	81.0	21.0	51.0	0.0	.	.
C21orf59	56683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33975557	33975557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C21orf59	NM_021254	exon5	c.G580T	p.A194S	TGGCTGCCCACCA	.	101.0	26.0	74.0	0.0	.	90
C3orf20	84077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14745959	14745959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C3orf20	NM_032137	exon7	c.A994G	p.T332A	TCTCAGACCCCGG	.	205.0	30.0	119.0	0.0	.	94
C5orf22	55322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31538578	31538578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C5orf22	NM_018356	exon4	c.T589G	p.S197A	TGTGACTCTTCTT	.	176.0	56.0	133.0	0.0	.	92
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88138481	88138481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	C6orf165	NM_001031743	exon9	c.G1098T	p.M366I	AGTGATGCAATGT	.	197.0	32.0	143.0	0.0	.	90
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61135274	61135274	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CA8	NM_004056	exon7	c.C672A	p.I224I	AGGTGGGATGGTG	.	69.0	28.0	62.0	0.0	.	90
CADPS2	93664	broad.mit.edu;mdanderson.org	37	7	122526241	122526241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CADPS2	NM_001167940	exon1	c.G151T	p.G51C	CGCCGCCGCCGCC	.	68.0	13.0	13.0	0.0	.	94
CCL8	6355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32647344	32647344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCL8	NM_005623	exon2	c.A133G	p.I45V	ATTCCTATCCAGA	.	38.0	29.0	54.0	0.0	.	90
CCPG1	9236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55651833	55651833	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCPG1	NM_020739	exon8	c.A2138T	p.E713V	TCATATTCCTTCA	.	111.0	11.0	63.0	0.0	.	91
CCR1	1230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46245458	46245458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR1	NM_001295	exon2	c.G347T	p.G116V	TACAAGCCTGTGT	.	166.0	44.0	108.0	1.0	.	660
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46400024	46400024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR2	NM_001123396	exon2	c.T1006C	p.Y336H	GTTTTCTACAGGG	.	79.0	22.0	41.0	0.0	.	568
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46307579	46307579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCR3	NM_178328	exon3	c.G993T	p.K331N	CCGGAAGTACCTG	.	63.0	23.0	29.0	0.0	.	660
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156294772	156294772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CCT3	NM_005998	exon6	c.A413G	p.K138R	ATTTTCTTTAGGG	.	41.0	26.0	37.0	0.0	.	92
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	110540596	110540596	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CDC40	NM_015891	exon11	c.A1120T	p.K374X	AACCGAAAAGTAC	.	115.0	18.0	99.0	0.0	.	90
CDKL4	344387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39414810	39414810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CDKL4	NM_001009565	exon6	c.C693A	p.N231K	AAACCCGTTACTT	.	77.0	37.0	58.0	0.0	.	334
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48686612	48686612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CELSR3	NM_001407	exon17	c.G6509T	p.W2170L	TCCAGCCAACCCT	.	66.0	13.0	50.0	0.0	.	523
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3740103	3740103	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CEP104	NM_014704	exon19	c.G2388C	p.T796T	GTGCTCCGTCAGA	.	57.0	17.0	56.0	0.0	.	92
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	53296958	53296958	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHD9	NM_025134	exon20	c.G4269A	p.W1423X	CTTCTGGCAAAAA	.	63.0	17.0	55.0	0.0	.	272
CHL1	10752	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	384669	384669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHL1	NM_001253388	exon6	c.A682G	p.K228E	TCAGTAAAGCATG	.	207.0	55.0	132.0	2.0	.	583
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	129520910	129520910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CHSY3	NM_175856	exon3	c.A2075T	p.K692M	CAATGAAGGGAGA	.	135.0	12.0	93.0	0.0	.	25
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58585618	58585629	+	In_Frame_Del	DEL	CCTGGGCCTGAG	CCTGGGCCTGAG	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CCTGGGCCTGAG	CCTGGGCCTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNOT1	NM_206999	exon23	c.3065_3076del	p.1022_1026del	CTGGAACCTGGGC	.	59.0	19.0	52.0	0.0	.	95
CNRIP1	25927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	68546450	68546450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNRIP1	NM_001111101	exon1	c.A83G	p.D28G	TGCCCGTCCACCT	.	57.0	25.0	26.0	0.0	.	69
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	99715953	99715953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CNTN5	NM_001243270	exon5	c.T536A	p.V179E	ACACTGTGGGGAG	.	56.0	15.0	43.0	0.0	.	366
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	21	47423312	47423312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	COL6A1	NM_001848	exon35	c.C2472G	p.F824L	CACGTTCTCCTCC	.	19.0	6.0	8.0	0.0	.	91
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	334785	334785	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	COLEC12	NM_130386	exon6	c.C1773T	p.P591P	GGCCAGGGGCACC	.	97.0	19.0	87.0	0.0	.	92
COLGALT2	23127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183909842	183909842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_015101	exon11	c.T1477A	p.Y493N	AGGAATAGTCGGC	.	338.0	63.0	215.0	2.0	.	.
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3860606	3860606	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CREBBP	NM_001079846	exon3	c.A973T	p.M325L	TTACCATATTTGG	.	92.0	38.0	74.0	0.0	.	1807
CRLF2	64109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	1327776	1327776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CRLF2	NM_022148	exon2	c.C105G	p.I35M	GAAGTAGATGATC	.	460.0	65.0	385.0	0.0	.	299
CRYGD	1421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	208986520	208986520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CRYGD	NM_006891	exon3	c.C402A	p.Y134X	CAGCTCGTAGAGG	.	98.0	48.0	80.0	0.0	.	90
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70881649	70881649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTH	NM_153742	exon2	c.A179G	p.Y60C	TTGAATATAGCCG	.	60.0	23.0	55.0	0.0	.	91
CTHRC1	115908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	104384015	104384015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTHRC1	NM_138455	exon1	c.A131G	p.Q44R	TCCGGCAGAGGGA	.	158.0	40.0	96.0	0.0	.	91
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11705647	11705647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CTSB	NM_147780	exon8	c.A461G	p.Y154C	GCAGGATAGCCAC	.	78.0	38.0	54.0	0.0	.	90
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17157488	17157488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	CUBN	NM_001081	exon7	c.G702A	p.M234I	CTCTCGCATTAAA	.	68.0	31.0	58.0	0.0	.	166
DCAKD	79877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43101864	43101864	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DCAKD	NM_001128631	exon5	c.A633G	p.T211T	GAGCCCTGTGAGG	.	35.0	29.0	56.0	0.0	.	90
DCD	117159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55040905	55040905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DCD	NM_053283	exon2	c.C97A	p.P33T	ACTCACGGTTCCC	.	33.0	5.0	29.0	0.0	.	91
DDI1	414301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103908253	103908253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DDI1	NM_001001711	exon1	c.C703A	p.P235T	GAGGCCCCCGAGA	.	102.0	58.0	76.0	0.0	.	137
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35287441	35287441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DEF6	NM_022047	exon8	c.A1356C	p.E452D	AGATGAAGAATCT	.	164.0	64.0	91.0	0.0	.	227
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66031083	66031083	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DENND4A	NM_001144823	exon6	c.A762G	p.V254V	AGAAAATACAGGC	.	192.0	54.0	120.0	0.0	.	229
DFFB	1677	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3775376	3775376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DFFB	NM_004402	exon2	c.T209G	p.V70G	AGCTGGTGCTGCT	.	53.0	13.0	43.0	1.0	.	91
DGCR14	8220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19132075	19132075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DGCR14	NM_022719	exon1	c.G79A	p.E27K	CAGCCTCTCCCGC	.	74.0	35.0	57.0	0.0	.	116
DHX57	90957	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	39081308	39081308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DHX57	NM_198963	exon9	c.A1918G	p.R640G	ACAGTCTGGTGGC	.	76.0	24.0	73.0	1.0	.	228
DIS3L	115752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	66621720	66621720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DIS3L	NM_001143688	exon14	c.A2518G	p.I840V	AGACATATCAACA	.	160.0	18.0	98.0	0.0	.	92
DNAH12	201625	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	57419403	57419403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DNAH12	NM_178504	exon31	c.T4739A	p.L1580H	CCAAAAAGTTGGC	.	70.0	8.0	37.0	0.0	.	47
DNAJB14	79982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100822217	100822218	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DNAJB14	NM_001031723	exon8	c.1108_1109insA	p.E370fs	GCCGCTCTAATTC	.	237.0	97.0	192.0	0.0	.	226
DSPP	1834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88535128	88535128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DSPP	NM_014208	exon5	c.C1314A	p.H438Q	TGGACACAGCAAT	.	191.0	28.0	145.0	0.0	.	90
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	102984322	102984322	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	DYNC2H1	NM_001377	exon2	c.A252G	p.E84E	ACCTGAAGTAATT	.	224.0	9.0	135.0	0.0	.	68
EDNRA	1909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148441067	148441067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EDNRA	NM_001957	exon3	c.C485A	p.P162H	TGTTCCCCTTTTT	.	112.0	53.0	75.0	0.0	.	586
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47144177	47144177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_014774	exon11	c.G1444A	p.G482R	ATCTTCCATCTCC	.	60.0	19.0	41.0	0.0	.	.
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	110915962	110915962	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EGF	NM_001963	exon20	c.C2931T	p.P977P	ATGTCCCCTGTCC	.	62.0	19.0	42.0	0.0	.	524
ENAH	55740	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	225707015	225707018	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TCTT	TCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ENAH	NM_001008493	exon5	c.684_687del	p.228_229del	TTCTTGTCTTTCT	.	93.0	22.0	56.0	0.0	.	516
EPB42	2038	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43502619	43502619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EPB42	NM_000119	exon5	c.G658T	p.D220Y	TGAGGTCAATGAC	.	40.0	7.0	33.0	0.0	.	92
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	93969103	93969103	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EPHA7	NM_004440	exon10	c.C1893T	p.S631S	AATACAGGAGGCA	.	92.0	62.0	90.0	0.0	.	1453
ERBB2IP	55914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	65370901	65370901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB2IP	NM_001253699	exon23	c.A3827G	p.N1276S	AGGCAAATTATAG	.	219.0	65.0	151.0	2.0	.	653
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56486845	56486845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB3	NM_001982	exon11	c.G1259T	p.G420V	TTGGAGGCAGAAG	.	77.0	12.0	56.0	0.0	.	1403
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56486836	56486836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ERBB3	NM_001982	exon11	c.C1250T	p.T417I	TGACAACCATTGG	.	80.0	12.0	62.0	0.0	.	1403
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72211880	72211880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	EYA1	NM_000503	exon8	c.C632T	p.S211L	TGCTGTGAACTAT	.	90.0	14.0	58.0	0.0	.	652
FAM104B	90736	broad.mit.edu;bcgsc.ca	37	X	55187569	55187569	+	Splice_Site	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM104B	NM_138362	exon2	c.20+1G>A	.	AACTTACCGTACA	.	58.0	5.0	47.0	0.0	.	130
FAM171B	165215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187627500	187627500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM171B	NM_177454	exon8	c.A2431G	p.T811A	AGCAAGACTAACA	.	241.0	102.0	186.0	0.0	.	141
FAM189A2	9413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72000833	72000833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM189A2	NM_004816	exon9	c.G826T	p.D276Y	AAGAGTGACCCTG	.	58.0	24.0	65.0	0.0	.	90
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49221275	49221275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAM65C	NM_080829	exon12	c.C981G	p.S327R	CGTGGGGCTGGGT	.	86.0	12.0	34.0	0.0	.	92
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207634821	207634821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FASTKD2	NM_001136193	exon3	c.A784G	p.I262V	GAACGTATCAATG	.	100.0	45.0	70.0	0.0	.	118
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150925186	150925186	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FAT2	NM_001447	exon9	c.C5502A	p.P1834P	GAAAGAGGGCATG	.	129.0	26.0	73.0	0.0	.	96
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127685696	127685696	+	Silent	SNP	A	A	G	rs183336575	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBN2	NM_001999	exon22	c.T2814C	p.D938D	AGCTGTATCTGTA	.	71.0	7.0	54.0	0.0	A|0.999;C|0.000	146
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127704957	127704957	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBN2	NM_001999	exon16	c.A2166G	p.A722A	GGTCACTGCACCG	.	92.0	16.0	60.0	0.0	.	146
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100190612	100190612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBXO24	NM_012172	exon5	c.G879T	p.E293D	TCAGGAGACCCAG	.	173.0	8.0	70.0	0.0	.	229
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147788727	147788727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FBXO38	NM_001271723	exon8	c.C909G	p.C303W	AGCTTGCAAAAAT	.	205.0	57.0	150.0	0.0	.	231
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40364247	40364247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FCGBP	NM_003890	exon31	c.C14395T	p.R4799C	AGTAGCGGCCATC	.	89.0	21.0	38.0	0.0	.	98
FPGT	8790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74671023	74671023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FPGT	NM_003838	exon4	c.G1292A	p.G431E	CAGTTGGGGAAAA	.	137.0	28.0	129.0	0.0	.	91
FUT1	2523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	49253497	49253497	+	Nonsense_Mutation	SNP	C	C	A	rs56131151	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	FUT1	NM_000148	exon4	c.G1042T	p.E348X	CCCACTCGGGCAG	.	47.0	18.0	21.0	0.0	.	227
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	27271951	27271951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001270873	exon3	c.G253T	p.V85L	GGTCCTGTGTCAT	.	150.0	50.0	143.0	0.0	.	.
GALNT3	2591	broad.mit.edu;mdanderson.org	37	2	166627194	166627194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GALNT3	NM_004482	exon2	c.G17T	p.R6L	ACTAGTCGCTTTA	.	23.0	14.0	9.0	0.0	.	92
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu	37	19	19612809	19612809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GATAD2A	NM_017660	exon10	c.G1532T	p.R511L	CGTTCCGCTCAGG	.	36.0	5.0	27.0	0.0	.	90
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120594723	120594723	+	Missense_Mutation	SNP	C	C	T	rs201424442		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GCN1L1	NM_006836	exon27	c.G3161A	p.R1054H	TGTAAGCGAGGCG	.	32.0	10.0	34.0	0.0	.	94
GIMAP6	474344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	150327197	150327197	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GIMAP6	NM_001244072	exon2	c.G34T	p.E12X	GATTCTCCTGGGG	.	106.0	11.0	45.0	0.0	.	93
GNAS	2778	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	20	57428390	57428390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GNAS	NM_080425	exon1	c.G70A	p.E24K	ATCGGGGAACAGC	.	126.0	11.0	68.0	0.0	.	4767
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121413069	121413069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GOLGB1	NM_001256486	exon13	c.G6301T	p.A2101S	TGTCTGCTAGGAC	.	67.0	9.0	42.0	0.0	.	161
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25464991	25464991	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GPR158	NM_020752	exon1	c.C642T	p.A214A	CCTGGCCAACGCC	.	46.0	23.0	34.0	0.0	.	141
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176025588	176025588	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	GPRIN1	NM_052899	exon2	c.G1248A	p.V416V	TGGATCCACCTTG	.	81.0	27.0	63.0	0.0	.	92
HBP1	26959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	106820464	106820464	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HBP1	NM_001244262	exon2	c.A156G	p.P52P	TTTGCCATCTTCA	.	120.0	31.0	85.0	0.0	.	91
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65144766	65144766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HELZ	NM_014877	exon20	c.G2540A	p.R847Q	TAGAGTCGGTCAA	.	84.0	55.0	35.0	0.0	.	92
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28422626	28422626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HERC2	NM_004667	exon60	c.G9193T	p.D3065Y	TTCCATCGACAGT	.	109.0	30.0	60.0	0.0	.	234
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81374398	81374398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HGF	NM_000601	exon6	c.C664A	p.L222I	CCATGAGACCTCG	.	59.0	11.0	35.0	0.0	.	516
HHEX	3087	broad.mit.edu;mdanderson.org	37	10	94450055	94450055	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HHEX	NM_002729	exon1	c.G312T	p.P104P	CTTCCCGCGGACG	.	88.0	12.0	62.0	0.0	.	227
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26056379	26056379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HIST1H1C	NM_005319	exon1	c.T278C	p.L93P	TGCACCAGAGTGC	.	129.0	60.0	65.0	0.0	.	231
HNRNPH2	3188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100668006	100668006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HNRNPH2	NM_001032393	exon2	c.G1030T	p.A344S	GTGGCAGCTATGG	.	111.0	45.0	75.0	0.0	.	130
HYOU1	10525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118922612	118922612	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	HYOU1	NM_006389	exon12	c.A1257T	p.A419A	GTACACTGCCCCC	.	104.0	33.0	64.0	0.0	.	90
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409382	21409382	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IFNA8	NM_002170	exon1	c.A207G	p.K69K	TGATAAACAGTTC	.	73.0	38.0	70.0	0.0	.	90
IL18	3606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	112014513	112014513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IL18	NM_001562	exon6	c.G388A	p.D130N	TTGTATCCTTGAT	.	81.0	44.0	60.0	0.0	.	90
IL4R	3566	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27374563	27374563	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IL4R	NM_000418	exon11	c.G1890T	p.G630G	AGAGGGGTATAAG	.	23.0	5.0	24.0	1.0	.	227
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44422488	44422488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	IPO13	NM_014652	exon5	c.A1111T	p.I371F	GATGATATTCTAT	.	38.0	19.0	31.0	0.0	.	226
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143586687	143586687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KCTD16	NM_020768	exon3	c.G410A	p.S137N	GCCACAGTGACTT	.	60.0	10.0	40.0	0.0	.	137
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	93775731	93775731	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KIAA0825	NM_001145678	exon14	c.T2453A	p.L818Q	TGATGCAGTAGGG	.	326.0	104.0	231.0	0.0	.	91
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245849630	245849630	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KIF26B	NM_018012	exon12	c.T3345C	p.S1115S	GGCGTCTAGGGAG	.	98.0	29.0	68.0	0.0	.	25
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	161068351	161068351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KLHDC9	NM_001007255	exon1	c.G26T	p.R9L	CGGGTCGGGCCGC	.	125.0	29.0	62.0	0.0	.	22
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39458187	39458187	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001257309	exon1	c.C917G	p.A306G	CAGCAAGCTGATT	.	62.0	28.0	86.0	0.0	.	.
KRTDAP	388533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35978347	35978347	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	KRTDAP	NM_207392	exon6	c.283delA	p.T95fs	CAGGAGTTGCGCT	.	84.0	19.0	50.0	0.0	.	90
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129588356	129588356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LAMA2	NM_000426	exon16	c.G2314A	p.E772K	ACTGGAGAATGCC	.	69.0	9.0	67.0	0.0	.	162
LAMC2	3918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	183209512	183209512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LAMC2	NM_005562	exon22	c.T3314A	p.L1105H	ACGGCCTCCTGCA	.	130.0	11.0	94.0	0.0	.	93
LGALS9	3965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	25972916	25972916	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LGALS9	NM_009587	exon7	c.C606T	p.S202S	GCAGAGCGCCCCT	.	300.0	148.0	184.0	0.0	.	226
LOXL4	84171	broad.mit.edu;mdanderson.org	37	10	100011440	100011440	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LOXL4	NM_032211	exon13	c.A1971T	p.A657A	GGCACATGCGTAG	.	62.0	8.0	44.0	0.0	.	230
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57552232	57552232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LRP1	NM_002332	exon11	c.A1609G	p.I537V	CCAGGCATCATCC	.	58.0	17.0	61.0	0.0	.	596
LRRC47	57470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3712543	3712543	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LRRC47	NM_020710	exon1	c.C498G	p.D166E	AAAGGAGTCTAGG	.	18.0	6.0	20.0	0.0	.	154
LTF	4057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	46480950	46480950	+	Missense_Mutation	SNP	G	G	T	rs149901533	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	LTF	NM_002343	exon15	c.C1745A	p.A582D	TCCTTAGCCCATG	.	130.0	37.0	66.0	0.0	G|0.999;A|0.000	703
MAG	4099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	35800910	35800919	+	Frame_Shift_Del	DEL	GAGCGAGCGG	GAGCGAGCGG	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GAGCGAGCGG	GAGCGAGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAG	NM_080600	exon8	c.1365_1374del	p.455_458del	GAACGAGAGCGAG	.	55.0	23.0	52.0	0.0	.	947
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	148798282	148798282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAGEA11	NM_005366	exon5	c.C1136T	p.P379L	CTGATCCTGCATG	.	123.0	68.0	47.0	0.0	.	132
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23890418	23890418	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_019066	exon1	c.C2472T	p.P824P	GGCAAAGGGATCC	.	86.0	23.0	74.0	0.0	.	.
MAN2A2	4122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91450650	91450650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MAN2A2	NM_006122	exon7	c.G1121T	p.R374L	TCAAACGCCTGCC	.	95.0	38.0	74.0	0.0	.	136
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57884114	57884114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MARS	NM_004990	exon6	c.G615T	p.Q205H	AAAGCAGCCCCAG	.	42.0	8.0	36.0	0.0	.	654
MCM7	4176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99695002	99695002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MCM7	NM_005916	exon10	c.A1123G	p.I375V	TGTTGATGTTGCC	.	96.0	21.0	37.0	0.0	.	651
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46787312	46787312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MEP1A	NM_005588	exon7	c.A427G	p.I143V	ATTTCCATTGGCC	.	95.0	53.0	59.0	0.0	.	183
MMP9	4318	hgsc.bcm.edu;bcgsc.ca	37	20	44642129	44642129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MMP9	NM_004994	exon9	c.C1566A	p.D522E	CTTCGACGCCATC	.	119.0	8.0	61.0	0.0	.	652
MOGAT3	346606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100839352	100839352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MOGAT3	NM_178176	exon7	c.C901T	p.L301F	GGTGGAGGCGCTG	.	67.0	21.0	39.0	0.0	.	92
MRPL51	51258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	6602118	6602118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MRPL51	NM_016497	exon2	c.A100G	p.I34V	GCCTTATACCGAT	.	78.0	33.0	66.0	0.0	.	90
MTM1	4534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	149818234	149818234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MTM1	NM_000252	exon10	c.G913A	p.E305K	AACGCCGAACTTT	.	149.0	10.0	62.0	0.0	.	228
MTMR7	9108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	17228586	17228586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MTMR7	NM_004686	exon3	c.C270A	p.C90X	GTCGTGGCAATCT	.	106.0	35.0	79.0	0.0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9071326	9071326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC16	NM_024690	exon3	c.G16120T	p.V5374L	TTGTCACCAGAAC	.	105.0	21.0	66.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9071328	9071328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC16	NM_024690	exon3	c.T16118G	p.L5373R	GTCACCAGAACAG	.	107.0	21.0	69.0	0.0	.	566
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1097846	1097847	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC2	NM_002457	exon37	c.6927_6928insC	p.V2309fs	CACTGTGCCCGGG	.	37.0	18.0	34.0	0.0	.	90
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1248993	1248993	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_002458	exon7	c.C756A	p.A252A	GCCGGCCGGCAAC	.	56.0	15.0	57.0	0.0	.	.
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1017897	1017897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MUC6	NM_005961	exon31	c.C4904A	p.T1635N	GCATGGGTAGGGG	.	282.0	30.0	285.0	0.0	.	23
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128380906	128380906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	MYO7B	NM_001080527	exon28	c.A3697T	p.S1233C	GGCCTCAGCGACC	.	58.0	9.0	29.0	0.0	.	47
NCAPH2	29781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50961497	50961497	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NCAPH2	NM_001185011	exon19	c.C1582A	p.R528R	GTCTCACGGTTCC	.	45.0	13.0	29.0	0.0	.	92
NEK3	4752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52718081	52718081	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NEK3	NM_002498	exon10	c.A846G	p.K282K	CGAATTTTTTATT	.	82.0	23.0	74.0	0.0	.	359
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56223244	56223244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NLRP9	NM_176820	exon8	c.G2765C	p.W922S	GCAATCCAGTCGA	.	154.0	53.0	88.0	0.0	.	294
NMNAT3	349565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	139297767	139297767	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NMNAT3	NM_178177	exon3	c.G129A	p.V43V	AGGGTCCACCCGG	.	99.0	18.0	87.0	0.0	.	90
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26949267	26949267	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NOVA1	NM_006489	exon3	c.A363C	p.R121R	CATTTCTCGAATT	.	85.0	30.0	83.0	0.0	.	229
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	96875737	96875737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NR2F2	NM_021005	exon1	c.C403A	p.R135S	TACTGCCGCCTCA	.	157.0	40.0	97.0	0.0	.	228
NSUN5P2	260294	bcgsc.ca;mdanderson.org	37	7	72419590	72419590	+	RNA	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NSUN5P2	.	.	.	.	AGACGCACCGGGC	.	165.0	34.0	63.0	0.0	.	90
NT5C2	22978	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	104899213	104899213	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	NT5C2	NM_012229	exon4	c.C125G	p.A42G	TCCATTGCTAAAC	.	75.0	7.0	58.0	1.0	.	90
NYAP1	222950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100085812	100085812	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_173564	exon4	c.C468T	p.S156S	GTCCAGCCGGAAG	.	202.0	44.0	93.0	0.0	.	.
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248569656	248569656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR2T1	NM_030904	exon1	c.A361G	p.M121V	ATTGACATGATGT	.	83.0	32.0	61.0	0.0	.	69
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55322576	55322576	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR4C15	NM_001001920	exon1	c.C794G	p.S265C	ACTTCTCCTTGTT	.	90.0	12.0	91.0	0.0	.	70
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20585602	20585602	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR4K17	NM_001004715	exon1	c.A37T	p.S13C	GGTATGAGTGATC	.	99.0	50.0	69.0	0.0	.	71
OR6P1	128366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158532535	158532535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OR6P1	NM_001160325	exon1	c.C860A	p.P287Q	ATGGCTGGGTTGA	.	131.0	30.0	77.0	0.0	.	68
OSBPL2	9885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60835074	60835074	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	OSBPL2	NM_144498	exon3	c.G75A	p.E25E	TTCAGAGGCAAAT	.	103.0	9.0	42.0	0.0	.	69
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80762078	80762078	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_173591	exon54	c.G6577C	p.V2193L	ACATCAGTTGTAT	.	60.0	17.0	55.0	0.0	.	.
PALD1	27143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	72289050	72289050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_014431	exon3	c.G251T	p.R84L	TGGGCCGGCTCTC	.	38.0	14.0	14.0	0.0	.	.
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139726111	139726111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PARP12	NM_022750	exon11	c.G1666T	p.A556S	CCACGGCCTTCCC	.	95.0	16.0	41.0	0.0	.	525
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	4967403	4967403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_032972	exon2	c.A1784G	p.Q595R	TTGATCAGAATGA	.	112.0	18.0	89.0	0.0	.	.
PCDH1	5097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141248170	141248170	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCDH1	NM_032420	exon2	c.A867G	p.L289L	CTCAGATAGTTCG	.	87.0	11.0	52.0	0.0	.	95
PCDH9	5101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	67800963	67800963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCDH9	NM_203487	exon2	c.G1610A	p.R537Q	ATGAATCGTTCTT	.	77.0	30.0	85.0	0.0	.	96
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24572377	24572377	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCK2	NM_004563	exon9	c.C1381T	p.L461L	GTACCCCTGGTAT	.	89.0	10.0	54.0	0.0	.	227
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78965753	78965753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PCSK5	NM_001190482	exon35	c.C4895A	p.A1632E	AAGGAGCGTTGAA	.	65.0	28.0	54.0	0.0	.	93
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178634089	178634089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE11A	NM_016953	exon10	c.C1750T	p.H584Y	TTGCATGGTATGA	.	55.0	27.0	38.0	0.0	.	93
PDE1B	5153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54963367	54963367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE1B	NM_000924	exon5	c.T448C	p.Y150H	CCCACTTACTCTA	.	111.0	47.0	90.0	0.0	.	92
PDE4C	5143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18321780	18321780	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDE4C	NM_000923	exon16	c.C2098G	p.P700A	GGTCTGGGCCGGC	.	89.0	34.0	77.0	0.0	.	94
PDHA1	5160	broad.mit.edu;bcgsc.ca	37	X	19367484	19367484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PDHA1	NM_001173454	exon3	c.A226G	p.I76V	TTTGAAATTAAGG	.	82.0	5.0	75.0	0.0	.	227
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	204429747	204429747	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PIK3C2B	NM_002646	exon7	c.C1353G	p.R451R	AAACTTGCGGCAG	.	144.0	9.0	60.0	0.0	.	1310
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110535606	110535606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PKHD1L1	NM_177531	exon76	c.C12475T	p.L4159F	ACTCCCCTTAGAA	.	123.0	7.0	91.0	0.0	.	145
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9319611	9319611	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLCB4	NM_182797	exon5	c.G296C	p.C99S	TAGTTTGTGTCTG	.	88.0	27.0	57.0	0.0	.	274
PLCE1	51196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96006140	96006140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLCE1	NM_016341	exon8	c.T2858C	p.I953T	TTGATATACACAC	.	112.0	51.0	92.0	0.0	.	229
PLEK	5341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	68613639	68613639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLEK	NM_002664	exon5	c.T478A	p.C160S	GGTAACTGCGTCA	.	77.0	16.0	50.0	0.0	.	91
PLXNB2	23654	broad.mit.edu;bcgsc.ca	37	22	50721222	50721234	+	Frame_Shift_Del	DEL	GGGACCCCCCGTA	GGGACCCCCCGTA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GGGACCCCCCGTA	GGGACCCCCCGTA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PLXNB2	NM_012401	exon18	c.2893_2905del	p.965_969del	GCACGGGGGACCC	.	35.0	7.0	48.0	0.0	.	211
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	128428491	128428491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001159542	exon1	c.A380G	p.E127G	AGAAGGAGAAGCT	.	73.0	34.0	32.0	0.0	.	.
PPAP2C	8612	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	291305	291305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PPAP2C	NM_003712	exon1	c.A32G	p.D11G	AGCACGTCGAGCA	.	94.0	15.0	53.0	1.0	.	90
PPP1R13B	23368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104205095	104205095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PPP1R13B	NM_015316	exon14	c.G2785A	p.V929I	CGCAGACGGCGTT	.	112.0	23.0	103.0	0.0	.	227
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43248679	43248679	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRDM15	NM_022115	exon19	c.G2475T	p.T825T	TTGGAACGTCTTG	.	58.0	9.0	38.0	0.0	.	90
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151254299	151254299	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRKAG2	NM_016203	exon16	c.A1698G	p.T566T	CGTTTCTGTCTCC	.	177.0	36.0	75.0	0.0	.	658
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48794637	48794637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRKDC	.	.	.	.	CTAACATGCCGTT	.	63.0	21.0	47.0	0.0	.	1515
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39588511	39588511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_025138	exon11	c.A878G	p.N293S	GGATGATTAATTG	.	59.0	25.0	45.0	0.0	.	.
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50119469	50119469	+	Silent	SNP	C	C	T	rs200097233		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PRR12	NM_020719	exon9	c.C5490T	p.S1830S	CCCCAGCGAGGAC	.	58.0	22.0	26.0	0.0	C|0.999;T|0.001	70
PSG3	5671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43237165	43237165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PSG3	NM_021016	exon3	c.G480T	p.E160D	CATGTCCTCCCTG	.	62.0	22.0	47.0	0.0	.	92
PTPN11	5781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112910827	112910827	+	Missense_Mutation	SNP	A	A	G	rs121918456		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PTPN11	NM_080601	exon7	c.A836G	p.Y279C	ATAGATATAAAAA	.	286.0	126.0	235.0	0.0	.	7239
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	7888209	7888209	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	PTPRM	NM_001105244	exon3	c.A302T	p.Y101F	TTCACTATTTTGT	.	86.0	20.0	97.0	0.0	.	228
RAB25	57111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156039508	156039508	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RAB25	NM_020387	exon4	c.C480G	p.T160T	CTCTACCAATGTT	.	188.0	48.0	126.0	0.0	.	227
RAD51	5888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40998470	40998470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RAD51	NM_001164270	exon4	c.A321T	p.K107N	CTCCAAAGAGCTT	.	337.0	108.0	234.0	0.0	.	563
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37191272	37191272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RALGAPB	NM_020336	exon24	c.G3629A	p.G1210D	ACCCTGGTTGGAC	.	217.0	29.0	124.0	0.0	.	92
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178427346	178427346	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RASAL2	NM_170692	exon14	c.A2919G	p.E973E	CATGGAAGATTTC	.	59.0	12.0	42.0	0.0	.	155
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24583179	24583180	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RBBP6	NM_006910	exon18	c.4792_4793insT	p.V1598fs	ACACAGGTTGAAA	.	147.0	30.0	123.0	0.0	.	230
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139265148	139265148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	REPS1	NM_001128617	exon6	c.A758G	p.Q253R	GTTGTCTGGTCCT	.	106.0	65.0	92.0	0.0	.	522
RGN	9104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	46949222	46949222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RGN	NM_004683	exon4	c.G394T	p.G132W	CACCAGGGGGCCC	.	55.0	7.0	43.0	0.0	.	130
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152322315	152322315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RIF1	NM_018151	exon30	c.C6281T	p.S2094F	GTAAATCTGAAGA	.	149.0	74.0	108.0	0.0	.	300
RMND1	55005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151751308	151751308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RMND1	NM_017909	exon5	c.G694A	p.G232R	CAGCTCCTTCCCT	.	389.0	56.0	322.0	0.0	.	90
RNF148	378925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	122342607	122342620	+	Frame_Shift_Del	DEL	AGAATGATTCCCGA	AGAATGATTCCCGA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AGAATGATTCCCGA	AGAATGATTCCCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RNF148	NM_198085	exon1	c.185_198del	p.62_66del	CAGAGGAGAATGA	.	117.0	23.0	59.0	0.0	.	204
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	77607255	77607255	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ROBO2	NM_002942	exon9	c.A1392T	p.R464S	TCCAAGAGCAACA	.	170.0	11.0	89.0	0.0	.	328
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10470654	10470654	+	Silent	SNP	G	G	A	rs200317816		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RP1L1	NM_178857	exon4	c.C954T	p.D318D	GCTGCCGTCCTCA	.	95.0	44.0	57.0	0.0	G|0.999;A|0.001	139
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	21770659	21770659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	RPGRIP1	NM_020366	exon4	c.G503A	p.R168K	GGGACAGGCTGAG	.	42.0	13.0	33.0	0.0	.	140
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23905055	23905055	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SACS	NM_014363	exon10	c.T12960C	p.L4320L	TTCTGGAAGCTTC	.	60.0	27.0	85.0	0.0	.	298
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23905368	23905368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SACS	NM_014363	exon10	c.A12647G	p.D4216G	GAATTGTCAGCAT	.	34.0	14.0	52.0	0.0	.	298
SAG	6295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234217900	234217900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SAG	NM_000541	exon2	c.G65T	p.R22L	TCTCCCGGGACAA	.	87.0	39.0	69.0	0.0	.	23
SALL2	6297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21991101	21991101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SALL2	NM_005407	exon2	c.C2761A	p.P921T	GGGAGGGAAAGGC	.	111.0	37.0	75.0	0.0	.	92
SAMD1	90378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14199510	14199510	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_138352	exon4	c.G1113A	p.P371P	CTGCTCCGGGAAT	.	94.0	21.0	68.0	0.0	.	.
SCLY	51540	broad.mit.edu;mdanderson.org	37	2	239006994	239006994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SCLY	NM_016510	exon12	c.T1360C	p.X454Q	CAGGCCTAGCACT	.	12.0	4.0	9.0	0.0	.	92
SCUBE1	80274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	43608519	43608519	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SCUBE1	NM_173050	exon17	c.G2133A	p.E711E	CCCGGGCTCAGGC	.	64.0	8.0	59.0	0.0	.	93
SFT2D2	375035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	168204373	168204373	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SFT2D2	NM_199344	exon4	c.A271T	p.K91X	CAGCTGAAGCGAA	.	213.0	119.0	136.0	0.0	.	69
SIGLECL1	284369	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	51770635	51770635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_173635	exon5	c.A419G	p.H140R	TGAAACATATCAG	.	13.0	7.0	9.0	0.0	.	.
SLC24A1	9187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65917213	65917213	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_004727	exon2	c.A795T	p.E265D	GGTAGAAGCAAAC	.	178.0	53.0	92.0	0.0	.	.
SLC26A4	5172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107314761	107314761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC26A4	NM_000441	exon5	c.A568G	p.S190G	ATTGCCAGTGCCC	.	143.0	30.0	62.0	1.0	.	96
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	9117613	9117613	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC2A5	NM_003039	exon3	c.G187T	p.E63X	AGTCTTCCATGAA	.	75.0	26.0	70.0	0.0	.	517
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9117614	9117614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC2A5	NM_003039	exon3	c.G186T	p.M62I	GTCTTCCATGAAT	.	75.0	26.0	70.0	0.0	.	517
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50256338	50256338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC38A3	NM_006841	exon14	c.G1264T	p.V422F	CTGCTGGTCATCT	.	69.0	13.0	36.0	0.0	.	67
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51864175	51864175	+	Splice_Site	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC4A8	NM_001258401	exon13	c.1366-1G>T	.	CTCTCAGAGTGCA	.	90.0	34.0	84.0	0.0	.	95
SLC4A9	83697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139740530	139740530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLC4A9	NM_001258428	exon2	c.C436T	p.P146S	GACTGCCCAGCTC	.	74.0	13.0	57.0	0.0	.	67
SLCO4A1	28231	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61287812	61287812	+	Silent	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SLCO4A1	NM_016354	exon2	c.C6G	p.P2P	GATGCCCCTGCAT	.	20.0	5.0	16.0	0.0	.	91
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11137010	11137010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SMARCA4	NM_003072	exon23	c.G3203T	p.G1068V	CTGGCGGCATTGT	.	102.0	11.0	87.0	0.0	.	1523
SP140L	93349	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	231256927	231256927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SP140L	NM_138402	exon12	c.C1090A	p.L364I	TGGCCCCTACGAC	.	110.0	53.0	106.0	0.0	.	23
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104136187	104136187	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	STAB2	NM_017564	exon56	c.C5886T	p.C1962C	AGCCTGCCCTGGA	.	67.0	27.0	53.0	0.0	.	104
SYT4	6860	broad.mit.edu;ucsc.edu;mdanderson.org	37	18	40854347	40854347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	SYT4	NM_020783	exon2	c.C47T	p.T16I	ACCACTGTGGGGA	.	21.0	5.0	14.0	0.0	.	132
TCTA	6988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49449889	49449889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TCTA	NM_022171	exon1	c.G30T	p.L10F	GGCCTTGCAGGCT	.	46.0	12.0	48.0	0.0	.	90
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43819108	43819108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	THADA	NM_001083953	exon3	c.A154G	p.I52V	AATGGATTTGTGA	.	128.0	62.0	99.0	0.0	.	228
THAP10	56906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	71175115	71175115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	THAP10	NM_020147	exon2	c.562delC	p.R188fs	GGTGACGGGGCCT	.	241.0	74.0	177.0	0.0	.	92
TMCO3	55002	hgsc.bcm.edu;bcgsc.ca	37	13	114201644	114201644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMCO3	NM_017905	exon11	c.T1720A	p.Y574N	GTGGCGTACGAGC	.	71.0	13.0	47.0	0.0	.	90
TMCO3	55002	hgsc.bcm.edu;broad.mit.edu	37	13	114201642	114201642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMCO3	NM_017905	exon11	c.1718delC	p.A573fs	TTGTGGCGTACGA	.	70.0	12.0	45.0	0.0	.	90
TMEM229A	730130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123672284	123672284	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001136002	exon1	c.C774T	p.F258F	GAAGGTGAAGAAG	.	145.0	24.0	58.0	0.0	.	.
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	41951403	41951403	+	Splice_Site	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMEM33	NM_018126	exon6	c.614+1G>T	.	TTGTCGGTAAGCT	.	25.0	11.0	23.0	0.0	.	91
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111780660	111780660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TMPRSS7	NM_001042575	exon9	c.A959T	p.Q320L	ATCATCAGACAAT	.	122.0	35.0	71.0	0.0	.	70
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76046694	76046694	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TNRC6C	NM_018996	exon4	c.G1551A	p.V517V	CGCTGTGCCAGCA	.	52.0	28.0	32.0	0.0	.	24
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	102.0	83.0	110.0	0.0	.	70225
TPM2	7169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35685682	35685688	+	Frame_Shift_Del	DEL	CTTCTGC	CTTCTGC	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CTTCTGC	CTTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPM2	NM_213674	exon3	c.330_336del	p.110_112del	CTCCAGCTTCTGC	.	48.0	17.0	54.0	0.0	.	515
TPO	7173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1481040	1481040	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPO	NM_175719	exon8	c.G1002T	p.P334P	CTCCCCGGCCCTA	.	74.0	7.0	29.0	0.0	.	332
TPRG1L	127262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3542442	3542442	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TPRG1L	NM_182752	exon3	c.A459G	p.K153K	CCCTAAATCGCTC	.	25.0	6.0	15.0	0.0	.	68
TRAF6	7189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36511424	36511424	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRAF6	NM_004620	exon7	c.G1533A	p.E511E	AAAACCCTCCCTC	.	95.0	29.0	105.0	0.0	.	660
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42243973	42243973	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRAK1	NM_001265608	exon13	c.1473delC	p.G491fs	CCCAGGCTCCCAC	.	211.0	26.0	123.0	0.0	.	91
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49686109	49686109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TRPM4	NM_001195227	exon11	c.A1538T	p.K513M	TGGGGAAGATGTG	.	69.0	15.0	55.0	0.0	.	91
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15480657	15480657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TUSC3	NM_178234	exon2	c.T207G	p.N69K	AATGAATGGTGAT	.	93.0	34.0	66.0	0.0	.	516
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15480659	15480659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	TUSC3	NM_178234	exon2	c.G209T	p.G70V	TGAATGGTGATAA	.	91.0	33.0	67.0	0.0	.	516
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	156974809	156974809	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	UBE3C	NM_014671	exon8	c.G778C	p.V260L	CAACAAGTTTTTA	.	148.0	24.0	76.0	0.0	.	704
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101750830	101750830	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	UTP20	NM_014503	exon43	c.A5661C	p.E1887D	AAAAGAATTACAG	.	77.0	11.0	64.0	0.0	.	155
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79973288	79973288	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	VPS13A	NM_001018038	exon57	c.C7969G	p.H2657D	CAGATACATGGTG	.	111.0	40.0	64.0	0.0	.	161
VWA5B2	90113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183959188	183959188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_138345	exon18	c.C3176G	p.P1059R	ACCTGCCCTTGGT	.	262.0	77.0	188.0	0.0	.	.
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73256365	73256365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	WBSCR27	NM_152559	exon2	c.G106T	p.A36S	CCGGAGCCCAGCG	.	125.0	15.0	34.0	0.0	.	90
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168106334	168106334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	XIRP2	NM_152381	exon9	c.A8432T	p.D2811V	GATCTGACAGAGG	.	131.0	55.0	102.0	0.0	.	104
YEATS2	55689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183480001	183480001	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	YEATS2	NM_018023	exon15	c.C1881A	p.S627S	TGTGTCCCCTCAA	.	47.0	10.0	46.0	0.0	.	138
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595192	129595192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZBTB43	NM_001135776	exon2	c.A404G	p.N135S	AGCTAAATCATGG	.	64.0	22.0	66.0	0.0	.	91
ZC3H15	55854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187351141	187351141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZC3H15	NM_018471	exon1	c.G32A	p.G11D	CCGGGGGCAGCAA	.	116.0	15.0	80.0	0.0	.	91
ZFHX3	463	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72984387	72984387	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZFHX3	NM_006885	exon3	c.C3197G	p.A1066G	AGGCTGGCCTCGT	.	76.0	31.0	60.0	1.0	.	72
ZKSCAN8	7745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28121655	28121655	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_006298	exon6	c.C1597G	p.L533V	ACTGGTCTCATTC	.	76.0	31.0	49.0	0.0	.	.
ZMIZ2	83637	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44798889	44798889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZMIZ2	NM_174929	exon6	c.G823A	p.G275R	TATCCAGGGCAGC	.	80.0	20.0	60.0	1.0	.	137
ZNF257	113835	hgsc.bcm.edu;broad.mit.edu	37	19	22271140	22271141	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF257	NM_033468	exon4	c.588_589del	p.196_197del	TCATATTAGAGAG	.	40.0	14.0	23.0	0.0	.	90
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129350034	129350035	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF280C	NM_017666	exon14	c.1569_1570insT	p.L523fs	AGTTGGTAATTTT	.	61.0	28.0	37.0	0.0	.	132
ZNF337	26152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656381	25656381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF337	NM_015655	exon5	c.C1543A	p.R515S	AAAAACGTTTCTC	.	97.0	30.0	72.0	0.0	.	90
ZNF337	26152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25656385	25656385	+	Missense_Mutation	SNP	C	C	G	rs190880125	alternate_allele	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF337	NM_015655	exon5	c.G1539C	p.E513D	ACGTTTCTCACCC	.	95.0	30.0	71.0	0.0	C|0.999;T|0.001	90
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12384142	12384142	+	Missense_Mutation	SNP	T	T	C	rs61737488	byfrequency	TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF44	NM_001164276	exon5	c.A1072G	p.T358A	TACATGTATAGGG	.	99.0	7.0	65.0	0.0	T|0.105;C|0.895	23
ZNF468	90333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53344538	53344538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF468	NM_001008801	exon4	c.G1009A	p.A337T	TATATGCGAAAGC	.	61.0	23.0	42.0	0.0	.	92
ZNF586	54807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	58290644	58290644	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF586	NM_001077426	exon2	c.G562T	p.E188X	ACACTGGAGAGAG	.	52.0	12.0	37.0	0.0	.	92
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57766370	57766370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZNF831	NM_178457	exon1	c.G296T	p.G99V	CTGAAGGGCCTGG	.	55.0	11.0	26.0	0.0	.	126
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53848860	53848860	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_138374	exon3	c.G117A	p.E39E	GCTGGAGAATTAT	.	59.0	29.0	31.0	0.0	.	.
ZSCAN25	221785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99226838	99226838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_145115	exon8	c.C830T	p.A277V	AGGAGGCAAAACC	.	117.0	27.0	58.0	0.0	.	.
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	126194031	126194032	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	ZXDC	NM_025112	exon1	c.678_679insA	p.K226fs	GTGCCGCTTGAGC	.	217.0	34.0	120.0	0.0	.	91
ZYG11A	440590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53352689	53352689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	NM_001004339	exon13	c.G2068A	p.A690T	CTCTGGGCACTAT	.	87.0	12.0	59.0	0.0	.	.
KRT83	3889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52715018	52715019	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.A34E	GGGGGCGGCGGTG	.	103.0	26.0	44.0	0.0	.	.
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73738729	73738730	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.I950K	TCTTTATCCGGCC	.	144.0	24.0	85.0	0.0	.	.
HHATL	57467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42735224	42735225	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.L378K	AGCCACAGTGTGG	.	101.0	19.0	60.0	0.0	.	.
TRAK1	22906	hgsc.bcm.edu;bcgsc.ca	37	3	42243975	42243976	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.S492*	CAGGCTCCCACGA	.	207.0	25.0	126.0	0.0	.	.
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99567271	99567272	+	Missense_Mutation	DNP	AG	AG	GT	novel		TCGA-MI-A75G-01A-11D-A32G-10	TCGA-MI-A75G-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	451ee39d-272a-47c5-9b55-cc1613bb6d2e	5d7b05ce-69de-4444-9baf-bb330ccce549	.	.	.	.	.	p.P1083H	TGCTGAAGGGCTG	.	228.0	38.0	149.0	0.0	.	.