Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABHD12B 145447 ucsc.edu;bcgsc.ca;mdanderson.org 37 14 51368576 51368576 + Silent SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ABHD12B NM_001206673 exon10 c.T810A p.R270R TTTACGTACACTT . 319.0 99.0 330.0 2.0 . 153 ACOT12 134526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 80640019 80640019 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ACOT12 NM_130767 exon9 c.T940G p.Y314D CCCGATAGCGTCT . 196.0 51.0 155.0 0.0 . 92 ACSM2B 348158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20554485 20554485 + Missense_Mutation SNP G G A rs143500332 TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ACSM2B NM_182617 exon12 c.C1381T p.R461W CTGCCCGTCCCAT . 155.0 47.0 263.0 0.0 G|1.000;A|0.000 94 ADAMTS1 9510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 28210528 28210528 + Silent SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ADAMTS1 NM_006988 exon9 c.G2274A p.Q758Q TCCCCTCTGGTTC . 68.0 29.0 64.0 0.0 . 272 ADH1A 124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100205700 100205700 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ADH1A NM_000667 exon5 c.C423A p.F141L GCCAAGGAAGTGG . 139.0 32.0 112.0 0.0 . 227 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148072845 148072845 + Missense_Mutation SNP G G C rs149966195 alternate_allele TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AFF2 NM_002025 exon21 c.G3919C p.D1307H CGCATCGATGCCC . 34.0 25.0 28.0 0.0 G|1.000;A|0.000 135 AGAP3 116988 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 150817090 150817090 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AGAP3 NM_001042535 exon8 c.G986T p.G329V GCGGCGGCAGCGC . 38.0 16.0 49.0 0.0 . 92 AGXT2L2 85007 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 177649437 177649437 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AGXT2L2 NM_153373 exon8 c.C846T p.N282N GTGGCCGTTGCCA . 170.0 78.0 120.0 1.0 . 91 AHR 196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 17379497 17379497 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AHR NM_001621 exon10 c.A2048G p.Q683R TCAGTCAAGAGTT . 52.0 19.0 71.0 0.0 . 227 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 91669986 91669986 + Splice_Site SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AKAP9 NM_005751 exon18 c.4693-2A>C . TATTAAAGATTCA . 86.0 32.0 91.0 0.0 . 755 AMER3 205147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 131520150 131520150 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_152698 exon2 c.A505G p.N169D CGGAGAAACAAGA . 32.0 10.0 28.0 0.0 . . AMPH 273 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 38457550 38457550 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . AMPH NM_001635 exon17 c.G1273T p.A425S ATTCAGCCTTGGA . 107.0 42.0 95.0 1.0 . 95 ANO7 50636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242148731 242148731 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ANO7 NM_001001891 exon12 c.T1271C p.V424A GCACCGTGTTCTT . 32.0 7.0 24.0 0.0 . 92 APOBEC3B 9582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 39388141 39388141 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . APOBEC3B NM_004900 exon7 c.1121delG p.R374fs GGCTGCGGGCCAT . 92.0 20.0 78.0 0.0 . 227 ARC 23237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 143695326 143695326 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ARC NM_015193 exon1 c.G307C p.A103P GGTTGGCGATGGT . 38.0 6.0 20.0 0.0 . 135 ARHGEF37 389337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 148996303 148996303 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ARHGEF37 NM_001001669 exon5 c.A632G p.N211S ATATCAATGAGTA . 146.0 33.0 109.0 0.0 . 90 ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24011501 24011501 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ATAD2B NM_001242338 exon20 c.G2657T p.R886I TGTATTCTAAAGA . 99.0 36.0 120.0 0.0 . 68 ATF6 22926 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 161762113 161762114 + Frame_Shift_Ins INS - - A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ATF6 NM_007348 exon6 c.684_685insA p.T228fs ACCCACTAAAGGT . 32.0 11.0 30.0 0.0 . 93 ATG4B 23192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242590731 242590731 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_178326 exon3 c.G165A p.R55R ATACAGGAAAAAC . 78.0 21.0 83.0 0.0 . . BAGE3 85318 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 11049620 11049620 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_182481 exon4 c.G281A p.R94Q TTCCTTCGCTATA . 551.0 31.0 545.0 0.0 . . BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 13610294 13610294 + Splice_Site SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_148894 exon9 c.1604-2A>G . CCTGCCTAGAAAA . 83.0 36.0 83.0 0.0 . . BTN3A1 11119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26409957 26409957 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . BTN3A1 NM_007048 exon5 c.A912G p.T304T AAGCACAAGAGGT . 48.0 9.0 20.0 0.0 . 92 C10orf90 118611 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 128118392 128118392 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . C10orf90 NM_001004298 exon7 c.G1925A p.C642Y GAAATGCACCGTT . 95.0 33.0 90.0 1.0 . 92 C12orf42 374470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 103762676 103762676 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . C12orf42 NM_001099336 exon4 c.T248A p.L83Q AAATTCAGAAAGT . 242.0 72.0 256.0 0.0 . 91 C2CD2 25966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 43332526 43332526 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . C2CD2 NM_015500 exon7 c.G868T p.V290L GCTGCACGACGCA . 48.0 20.0 46.0 0.0 . 91 C4orf45 152940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 159956201 159956201 + Missense_Mutation SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_152543 exon1 c.A48C p.K16N CATTTGTTTTCCC . 87.0 33.0 82.0 0.0 . . C4orf47 441054 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 186366160 186366160 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001114357 exon6 c.C757A p.H253N CCATCACATTCTG . 163.0 7.0 203.0 0.0 . . C5orf55 116349 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 442609 442609 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_138464 exon1 c.C329T p.S110L CCCAGTGACCCAC . 37.0 16.0 19.0 0.0 . . CACNA1A 773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13365942 13365942 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CACNA1A NM_001127221 exon29 c.G4725A p.M1575I GGCGATCATGGCC . 24.0 9.0 26.0 0.0 . 67 CALR3 125972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16601349 16601349 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CALR3 NM_145046 exon3 c.G226A p.A76T AGATGGCATAGAA . 92.0 30.0 93.0 0.0 . 90 CAMKK1 84254 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 3779538 3779538 + Silent SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CAMKK1 NM_172207 exon11 c.C1089A p.S363S CTGGCCGGAATCA . 38.0 23.0 47.0 0.0 . 334 CCDC178 374864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 30554599 30554599 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001105528 exon21 c.T2435A p.F812Y AGTTTGAAGTGCT . 67.0 34.0 45.0 0.0 . . CCDC65 85478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49298898 49298898 + Splice_Site SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CCDC65 NM_033124 exon2 c.300+2T>C . TCAAGGTAGGCAC . 37.0 18.0 52.0 0.0 . 92 CCNO 10309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 54528358 54528358 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CCNO NM_021147 exon2 c.G398T p.R133L TTACAGCGGGATT . 127.0 65.0 72.0 1.0 . 90 CCSER1 401145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 91645123 91645123 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001145065 exon7 c.A1991T p.E664V TTACTGAAGAGCC . 349.0 135.0 360.0 0.0 . . CD1E 913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158325807 158325807 + Silent SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CD1E NM_030893 exon4 c.C816A p.T272T AGCAACCCTGGAT . 111.0 28.0 89.0 0.0 . 93 CDH11 1009 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 65025685 65025685 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CDH11 NM_001797 exon6 c.797delC p.P266fs AACTTTGGTGGGT . 52.0 22.0 78.0 0.0 . 852 CDK5RAP1 51654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 31967440 31967440 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CDK5RAP1 NM_016408 exon8 c.G934C p.E312Q GGACCTCCGAATT . 107.0 44.0 90.0 0.0 . 230 CLASP2 23122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 33638205 33638205 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CLASP2 NM_015097 exon19 c.A1949G p.D650G TTACCATCCAGCT . 358.0 134.0 334.0 0.0 . 93 CLCA2 9635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 86913417 86913417 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CLCA2 NM_006536 exon11 c.A1940T p.E647V AGCCAGAGACTGG . 38.0 11.0 37.0 0.0 . 155 CLCA4 22802 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 87029375 87029375 + Silent SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CLCA4 NM_012128 exon4 c.C480G p.L160L TCACCTCCGGTGG . 138.0 50.0 134.0 1.0 . 92 CMPK2 129607 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 7003625 7003625 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CMPK2 NM_001256478 exon2 c.G760A p.V254I CAACAACCTGGAA . 81.0 26.0 43.0 1.0 . 68 CNTN2 6900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 205041085 205041085 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CNTN2 NM_005076 exon20 c.G2555T p.W852L GCTACTGGAAAGC . 52.0 20.0 39.0 0.0 . 91 COL4A2 1284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 111090978 111090978 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . COL4A2 NM_001846 exon15 c.A875C p.K292T CCTTGAAGGGAGA . 119.0 39.0 114.0 0.0 . 95 COL9A1 1297 ucsc.edu;bcgsc.ca 37 6 71004221 71004221 + Silent SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . COL9A1 NM_001851 exon5 c.G345T p.T115T AAACGTCGTCAAG . 71.0 40.0 122.0 2.0 . 94 COX6B1 1340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36142167 36142167 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . COX6B1 NM_001863 exon2 c.A22G p.K8E GAGACCAAAATCA . 79.0 19.0 70.0 0.0 . 226 CR2 1380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207644213 207644213 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CR2 NM_001006658 exon7 c.C1354G p.Q452E TCCATACAGTGTA . 96.0 24.0 70.0 0.0 . 232 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 113314168 113314168 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 CSMD3,NS,carcinoma,-1 CSMD3 NM_198123 exon53 c.C8294A p.P2765H TTTGGAGGTGTAG . 104.0 17.0 41.0 0.0 . 1132 CSPP1 79848 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 68062027 68062027 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CSPP1 NM_024790 exon16 c.A1970G p.N657S ATTTGAATAGGAT . 320.0 17.0 181.0 1.0 . 138 CXCL14 9547 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 134914414 134914414 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CXCL14 NM_004887 exon1 c.C91T p.R31C CCACACGCGCGGT . 57.0 32.0 40.0 0.0 . 650 CXCR3 2833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70836903 70836903 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . CXCR3 NM_001142797 exon2 c.T560A p.L187H AGCAGGAGGGCTC . 17.0 13.0 28.0 0.0 . 660 DDX3Y 8653 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 Y 15024659 15024659 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DDX3Y NM_004660 exon5 c.G302T p.S101I GACGGAGTGACTA . 109.0 85.0 97.0 0.0 . 136 DEDD2 162989 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 42713936 42713936 + Nonsense_Mutation SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DEDD2 NM_133328 exon4 c.A505T p.R169X GCCGTCTGGCACC . 37.0 11.0 26.0 0.0 . 90 DENND2A 27147 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 140221816 140221816 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DENND2A NM_015689 exon16 c.T2750C p.F917S GTCAGGAACAAAG . 77.0 29.0 66.0 0.0 . 138 DGKB 1607 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 14741336 14741336 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DGKB NM_145695 exon6 c.C486T p.D162D ATCCGTGTCATAA . 191.0 66.0 214.0 1.0 . 276 DIP2C 22982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 329266 329266 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DIP2C NM_014974 exon35 c.C4240A p.R1414S CTGTGCGTGCCCA . 100.0 37.0 69.0 0.0 . 156 DIRAS1 148252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 2717599 2717599 + Missense_Mutation SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DIRAS1 NM_145173 exon2 c.C206G p.P69R ATGGCCGGGAACT . 38.0 15.0 31.0 0.0 . 659 DPY19L1 23333 broad.mit.edu;bcgsc.ca 37 7 34981498 34981498 + Splice_Site SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DPY19L1 NM_015283 exon19 c.1351-2A>G . ACCAGCTGAAAGA . 307.0 92.0 278.0 1.0 . 68 DSP 1832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 7571705 7571705 + Silent SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . DSP NM_004415 exon14 c.A1791T p.S597S AGGCTCAGAGATG . 173.0 43.0 85.0 0.0 . 518 EEF2K 29904 ucsc.edu;bcgsc.ca 37 16 22291635 22291635 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . EEF2K NM_013302 exon17 c.C2006T p.A669V TGCTGGCCAGGGA . 31.0 4.0 49.0 0.0 . 856 EIF3A 8661 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120801558 120801558 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . EIF3A NM_003750 exon19 c.C3474T p.P1158P CCGTCTGGGAAAC . 93.0 42.0 80.0 1.0 . 226 ENTPD1 953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 97602202 97602202 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ENTPD1 NM_001164178 exon4 c.C400A p.Q134K CAGCACCAAGAGA . 135.0 52.0 129.0 0.0 . 93 EPHA6 285220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 97185271 97185271 + Silent SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . EPHA6 NM_173655 exon5 c.A15C p.P5P CTCTCCATTTCAA . 68.0 30.0 67.0 0.0 . 1561 ERMN 57471 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 158177872 158177872 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ERMN NM_001009959 exon4 c.T805C p.S269P ATCTGGAATAAGC . 102.0 5.0 130.0 0.0 . 92 FAM194A 131831 hgsc.bcm.edu;broad.mit.edu 37 3 150421522 150421523 + In_Frame_Ins INS - - CCTCCT novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FAM194A NM_152394 exon1 c.164_165insAGGAGG p.V55delinsEEV TCCACCACCTCCT . 40.0 14.0 33.0 0.0 . 93 FAM196B 100131897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169310676 169310676 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001129891 exon2 c.C227T p.P76L GTGGGGGGAAGAT . 106.0 31.0 71.0 0.0 . . FASN 2194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80040839 80040839 + Silent SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FASN NM_004104 exon33 c.G5718A p.Q1906Q CCCACGCTGTATC . 68.0 21.0 40.0 0.0 . 90 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92616284 92616284 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FAT3 NM_001008781 exon23 c.T12662C p.V4221A GCAACGTCTACCA . 46.0 13.0 31.0 0.0 . 73 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48764821 48764821 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FBN1 NM_000138 exon35 c.C4263T p.L1421L TGCATTGAGGCAC . 67.0 17.0 57.0 0.0 . 92 FERMT1 55612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 6057861 6057861 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FERMT1 NM_017671 exon15 c.G1993A p.D665N CCTCATCGAGTGT . 74.0 30.0 56.0 0.0 . 495 FMNL2 114793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 153471456 153471456 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FMNL2 NM_052905 exon12 c.C1154A p.A385D AAGATGCTGAAAC . 90.0 40.0 92.0 0.0 . 516 FOXD3 27022 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 63788839 63788839 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . FOXD3 NM_012183 exon1 c.A110G p.E37G TGGAAGAGAAGGA . 20.0 7.0 10.0 0.0 . 226 GABBR1 2550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 29572726 29572726 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GABBR1 NM_001470 exon21 c.T2479C p.S827P GGCTGGACAGAAT . 74.0 27.0 48.0 0.0 . 521 GABRR3 200959 broad.mit.edu;bcgsc.ca 37 3 97736568 97736568 + Splice_Site SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GABRR3 NM_001105580 exon5 c.239-2A>T . AGACCCTTAAGAA . 42.0 13.0 48.0 1.0 . 68 GLI2 2736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 121747847 121747847 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GLI2 NM_005270 exon13 c.A4357T p.M1453L ATCCACATGTACG . 99.0 38.0 96.0 0.0 . 954 GLS2 27165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56868406 56868406 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GLS2 NM_013267 exon12 c.T1146C p.S382S TTCAGCACTCAGC . 28.0 10.0 25.0 0.0 . 91 GPR156 165829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 119885965 119885965 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GPR156 NM_153002 exon9 c.G2359T p.G787W GCCCCCCAGTAGG . 80.0 31.0 57.0 0.0 . 92 GPR62 118442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 51990739 51990739 + Silent SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GPR62 NM_080865 exon1 c.C1071A p.P357P GAGCCCCGCATAC . 130.0 44.0 96.0 0.0 . 91 GRIA2 2891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 158281153 158281153 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GRIA2 NM_000826 exon13 c.T2149C p.S717P CGGAAGTCCAAAG . 89.0 24.0 91.0 0.0 . 515 GRIA4 2893 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 105797567 105797567 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . GRIA4 NM_001077243 exon13 c.C1948G p.R650G GTTGAGCGAATGG . 144.0 54.0 129.0 1.0 . 230 GUCY1B3 2983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 156724875 156724875 + Nonsense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_000857 exon11 c.G1513T p.E505X ATGATGGAAATTG . 59.0 22.0 48.0 0.0 . . H2AFZ 3015 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100870052 100870052 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . H2AFZ NM_002106 exon4 c.C241T p.R81C TAATACGCTTTAC . 167.0 50.0 173.0 1.0 . 90 HEPACAM2 253012 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92848433 92848433 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . HEPACAM2 NM_001039372 exon2 c.G411T p.K137N TTGTATCTTCTGA . 75.0 31.0 67.0 1.0 . 157 HERC2P3 283755 broad.mit.edu;mdanderson.org 37 15 20658890 20658890 + RNA SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . HERC2P3 . . . . TCCCTCAGGAATA . 148.0 20.0 124.0 0.0 . 92 HOXB7 3217 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 46685380 46685380 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . HOXB7 NM_004502 exon2 c.C478T p.R160C GGTAGCGATTGTA . 105.0 24.0 66.0 0.0 . 90 HOXC8 3224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54403335 54403335 + Silent SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . HOXC8 NM_022658 exon1 c.T267C p.Y89Y ATTCTATGGCTAC . 66.0 22.0 65.0 0.0 . 91 IFT88 8100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 21175874 21175874 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . IFT88 NM_175605 exon14 c.A870G p.T290T AGTTACATTTATT . 180.0 53.0 208.0 0.0 . 91 IGSF11 152404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 118647489 118647489 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . IGSF11 NM_001015887 exon3 c.C291T p.T97T TGGCATGGTGCCT . 73.0 21.0 53.0 0.0 . 90 INADL 10207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62341008 62341008 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . INADL NM_176877 exon21 c.A2929C p.N977H AATCTTAATTCAT . 392.0 144.0 406.0 0.0 . 94 IPO9 55705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201817700 201817700 + Silent SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . IPO9 NM_018085 exon4 c.T492C p.H164H CGTCCATGGAGCC . 105.0 26.0 98.0 0.0 . 228 IQCG 84223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 197670818 197670818 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . IQCG NM_032263 exon4 c.C113T p.P38L TCTTTAGGTATTC . 79.0 33.0 107.0 0.0 . 90 JARID2 3720 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 6 15496837 15496837 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . JARID2 NM_004973 exon7 c.A1381G p.K461E AAGATGAAAGGGG . 67.0 15.0 12.0 0.0 . 228 KCNG3 170850 hgsc.bcm.edu;mdanderson.org 37 2 42720469 42720469 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KCNG3 NM_172344 exon1 c.G173T p.R58L TCGTTGCGCTCGC . 24.0 8.0 9.0 0.0 . 90 KCNK2 3776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215259976 215259976 + Silent SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KCNK2 NM_001017425 exon2 c.C312G p.S104S CATATCCCAACAT . 96.0 24.0 60.0 0.0 . 90 KDM6A 7403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 44870266 44870266 + Splice_Site SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KDM6A NM_021140 exon5 c.443+2T>G . CAGTGGTAAGTTG . 40.0 26.0 49.0 0.0 . 2748 KDR 3791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55963911 55963911 + Silent SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KDR NM_002253 exon18 c.C2532G p.A844A GCCAAAGGCACCA . 63.0 20.0 47.0 0.0 . 2298 KIAA0125 9834 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 106388399 106388399 + RNA SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NR_026800 exon4 c.1095-1G>T . GACACAGCAAGAA . 333.0 136.0 236.0 0.0 . . KIF1C 10749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4905414 4905414 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KIF1C NM_006612 exon6 c.G424A p.V142M TACTCTGTGGAGG . 43.0 20.0 76.0 0.0 . 92 KIF4A 24137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69595074 69595074 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KIF4A NM_012310 exon17 c.A1799G p.K600R GCCGCAAACGTCT . 70.0 54.0 62.0 0.0 . 134 KIR2DL1 3802 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 55284949 55284949 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KIR2DL1 NM_014218 exon3 c.G235A p.G79R CATGATGGGGTCT . 26.0 21.0 33.0 0.0 . 90 KRTAP5-2 440021 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 11 1619366 1619366 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . KRTAP5-2 NM_001004325 exon1 c.G115A p.G39S CAGAGCCACAGCC . 38.0 13.0 40.0 0.0 . 44 LAMA1 284217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 7033066 7033066 + Missense_Mutation SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LAMA1 NM_005559 exon15 c.A2080T p.S694C TAGAGCTGGCTAT . 36.0 11.0 51.0 0.0 . 149 LHX8 431707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75608866 75608866 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LHX8 NM_001001933 exon6 c.A453G p.R151R CCGGAGAGCCAAG . 97.0 27.0 76.0 0.0 . 93 LHX9 56956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197887089 197887089 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LHX9 NM_020204 exon1 c.C136T p.R46C GAGGCCCGTCTGG . 111.0 29.0 81.0 0.0 . 91 LOC728819 0 ucsc.edu;mdanderson.org 37 2 43902537 43902537 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001101330 exon1 c.C925T p.P309S CAACTGGAGGCAA . 76.0 32.0 98.0 1.0 . . LPIN1 23175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 11922631 11922631 + Missense_Mutation SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LPIN1 NM_001261428 exon9 c.G1409C p.R470T GGAAAAGAGGTAC . 70.0 21.0 68.0 0.0 . 156 LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 42356423 42356423 + Silent SNP C C A rs140770648 TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LRFN5 NM_152447 exon3 c.C595A p.R199R ATGACTCGGTTAG . 52.0 17.0 55.0 0.0 C|0.999;A|0.001 97 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57603645 57603645 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LRP1 NM_002332 exon80 c.C12433T p.P4145S AAGCAGCCCGAAG . 26.0 10.0 28.0 0.0 . 596 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170003385 170003385 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LRP2 NM_004525 exon69 c.C12675A p.F4225L GTCCTCGAAAACC . 149.0 49.0 153.0 0.0 . 175 LRRC37B 114659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 30348372 30348372 + Silent SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LRRC37B NM_052888 exon1 c.G207T p.P69P AGCCCCGGGGGAC . 87.0 6.0 67.0 0.0 . 92 LRRCC1 85444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 86048194 86048194 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LRRCC1 NM_033402 exon14 c.A2325G p.Q775Q GGCACAACAAGGT . 235.0 39.0 133.0 0.0 . 90 LSP1 4046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 1887904 1887904 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . LSP1 NM_001242932 exon2 c.T200C p.V67A AATGTGTTTTCCC . 60.0 20.0 70.0 0.0 . 90 MAG 4099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35786342 35786342 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MAG NM_080600 exon3 c.T31C p.W11R CTGTTCTGGATTA . 59.0 21.0 65.0 0.0 . 947 MAGEB4 4115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 30260451 30260451 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MAGEB4 NM_002367 exon1 c.C199A p.P67T GAGCCACCCACCA . 64.0 45.0 58.0 0.0 . 131 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 79082460 79082460 + Missense_Mutation SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MAGI2 NM_012301 exon1 c.A177C p.K59N CACCAATTTGCTG . 79.0 22.0 72.0 0.0 . 461 MAT2A 4144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 85770059 85770059 + Silent SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MAT2A NM_005911 exon8 c.T987C p.S329S ATTATCTATCTCC . 172.0 57.0 181.0 0.0 . 90 MDM1 56890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 68715374 68715374 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MDM1 NM_017440 exon6 c.C836T p.A279V ATCTCTGCTTCCA . 89.0 20.0 73.0 0.0 . 95 MEF2C 4208 hgsc.bcm.edu;broad.mit.edu 37 5 88057132 88057132 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MEF2C NM_001193350 exon4 c.A272G p.K91R AGGCCCTTCTTTC . 82.0 5.0 63.0 0.0 . 704 MMP16 4325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 89053953 89053953 + Silent SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MMP16 NM_005941 exon10 c.A1560T p.G520G TGGATATCCAGGT . 152.0 65.0 106.0 0.0 . 231 MPO 4353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56348028 56348028 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MPO NM_000250 exon12 c.G2227C p.E743Q AGGCTTCCCTCCA . 104.0 23.0 80.0 0.0 . 156 MROH5 389690 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 142451260 142451260 + RNA SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . . . . . TGAGGATGGCCAC . 49.0 12.0 20.0 0.0 . . MROH5 389690 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 142489405 142489405 + RNA SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . . . . . CCGCCAGCCCCAA . 96.0 32.0 56.0 0.0 . . MRPL47 57129 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 179310438 179310438 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MRPL47 NM_020409 exon6 c.T623G p.F208C CTGAGAAAATGGT . 78.0 27.0 57.0 0.0 . 90 MTA1 9112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 105931048 105931048 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MTA1 NM_004689 exon15 c.C1382G p.P461R GGAGCCCCAAGTT . 81.0 24.0 49.0 0.0 . 135 MTTP 4547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100532577 100532577 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MTTP NM_000253 exon15 c.G1956A p.Q652Q CTTTCAGTACATT . 150.0 57.0 153.0 0.0 . 93 MUC17 140453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100683826 100683826 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MUC17 NM_001040105 exon3 c.A9129T p.E3043D TAGTGAAGGAAGT . 46.0 21.0 50.0 0.0 . 95 MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27420004 27420004 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . MYO18A NM_078471 exon33 c.T4942G p.F1648V ACTCAAAGTCCCG . 36.0 9.0 37.0 0.0 . 22 NCAPD3 23310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134076627 134076627 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . NCAPD3 NM_015261 exon8 c.G883T p.V295F TGATGACCTAGAA . 81.0 43.0 70.0 0.0 . 229 NECAP1 25977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8242584 8242584 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . NECAP1 NM_015509 exon2 c.A148T p.T50S CGAATCACTTCAA . 52.0 22.0 76.0 0.0 . 91 NLGN4Y 22829 hgsc.bcm.edu;bcgsc.ca 37 Y 16941900 16941900 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_014893 exon5 c.A1102G p.M368V GACATCATGCTGG . 199.0 106.0 188.0 1.0 . . NTM 50863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 132205003 132205003 + Missense_Mutation SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . NTM NM_001144058 exon8 c.T1031A p.L344Q GGCTGCTGCCTCT . 35.0 20.0 29.0 0.0 . 95 OPCML 4978 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 132526997 132526997 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . OPCML NM_002545 exon2 c.385delC p.H129fs TTAGGTGAACCCG . 147.0 45.0 135.0 0.0 . 93 OR2S2 56656 broad.mit.edu;bcgsc.ca 37 9 35957695 35957695 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . OR2S2 NM_019897 exon1 c.C401T p.S134F ATCACGGAGTACC . 29.0 4.0 56.0 0.0 . 68 OR8K3 219473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56085886 56085886 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . OR8K3 NM_001005202 exon1 c.A104G p.Y35C TGATCTATGTGAT . 67.0 36.0 80.0 0.0 . 70 OVCH1 341350 broad.mit.edu;ucsc.edu 37 12 29628111 29628111 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . OVCH1 NM_183378 exon14 c.G1483T p.G495X ACATTCCACAAAG . 142.0 43.0 133.0 1.0 . 210 OVCH1 341350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 29628110 29628110 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . OVCH1 NM_183378 exon14 c.G1484T p.G495V AACATTCCACAAA . 143.0 42.0 135.0 0.0 . 210 PADI4 23569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17690059 17690059 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PADI4 NM_012387 exon16 c.C1801A p.P601T CCCAAGCCCTTCG . 114.0 50.0 84.0 0.0 . 70 PAK7 57144 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 9546703 9546703 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PAK7 NM_177990 exon5 c.T1319C p.V440A GGGCTGACCACCA . 59.0 18.0 73.0 0.0 . 1434 PCDHA7 56141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140215935 140215935 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PCDHA7 NM_031852 exon1 c.A1967T p.E656V ACGGGGAGCCCTC . 78.0 39.0 54.0 0.0 . 94 PDZD7 79955 bcgsc.ca;mdanderson.org 37 10 102783278 102783278 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PDZD7 NM_001195263 exon4 c.C457T p.L153L TGGTCAGCACCTT . 33.0 16.0 30.0 1.0 . 136 PKN1 5585 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 14581098 14581098 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PKN1 NM_213560 exon19 c.A2435T p.Y812F TGCTCTACGAGAT . 19.0 5.0 26.0 0.0 . 1481 PKNOX2 63876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 125267956 125267956 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PKNOX2 NM_022062 exon7 c.C586G p.Q196E CACTCACAGGTAA . 89.0 30.0 68.0 0.0 . 93 PLA2G7 7941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46682256 46682256 + Silent SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PLA2G7 NM_005084 exon5 c.T411A p.P137P CCTCAGAGGGGAA . 121.0 23.0 58.0 0.0 . 90 PLEKHA6 22874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204210871 204210871 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PLEKHA6 NM_014935 exon16 c.C2244T p.I748I AAGGCTGATGTCT . 100.0 33.0 95.0 0.0 . 654 PLXNA3 55558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153698841 153698841 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PLXNA3 NM_017514 exon30 c.C5043A p.H1681Q AGCCCACCGGGGC . 94.0 68.0 105.0 0.0 . 132 PNPLA7 375775 bcgsc.ca;mdanderson.org 37 9 140391674 140391674 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_1 WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PNPLA7 NM_001098537 exon18 c.G1978T p.A660S CCCCGGCCAGGCG . 35.0 20.0 34.0 1.0 . 91 POMC 5443 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 25384341 25384341 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . POMC NM_001035256 exon4 c.C413T p.S138F GAGTAGGAGCGCT . 30.0 16.0 12.0 0.0 . 91 PRDM1 639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 106536266 106536266 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PRDM1 NM_001198 exon2 c.A233T p.Q78L CGGTTCAGGCGGA . 73.0 33.0 76.0 0.0 . 862 PREX1 57580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47267445 47267445 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PREX1 NM_020820 exon23 c.C2804T p.A935V TAGCAGGCAATCC . 44.0 14.0 48.0 0.0 . 231 PRKDC 5591 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 48715984 48715984 + Silent SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PRKDC . . . . CGTCTCTGGTTTT . 101.0 13.0 59.0 0.0 . 1515 PRTG 283659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 55912922 55912922 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PRTG NM_173814 exon19 c.A3137G p.K1046R TTGTTTTTAATTA . 133.0 42.0 107.0 0.0 . 92 PTCH2 8643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 45292375 45292375 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PTCH2 NM_001166292 exon18 c.G2761A p.A921T AGTCTGCAGTCTT . 29.0 8.0 34.0 0.0 . 851 PTCHD2 57540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 11574466 11574466 + Missense_Mutation SNP G G T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . PTCHD2 NM_020780 exon4 c.G1336T p.G446W CTCTATGGGGGGA . 41.0 13.0 61.0 0.0 . 209 RABGAP1L 9910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 174957891 174957891 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RABGAP1L NM_001243765 exon8 c.C876A p.D292E GAAGGACTCACTT . 86.0 36.0 91.0 0.0 . 540 RADIL 55698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 4854972 4854972 + Missense_Mutation SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RADIL NM_018059 exon9 c.C2076G p.H692Q GAAGAAGTGCTCT . 46.0 17.0 42.0 0.0 . 994 RASGRF1 5923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 79327481 79327481 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RASGRF1 NM_001145648 exon6 c.T950A p.L317Q AGGACCAGCGTGG . 45.0 21.0 48.0 0.0 . 662 RASGRF1 5923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 79339166 79339166 + Missense_Mutation SNP A A C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RASGRF1 NM_001145648 exon5 c.T800G p.L267R GGGCGCAGGAAAT . 46.0 20.0 38.0 0.0 . 662 RECK 8434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 36122844 36122844 + Silent SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RECK NM_021111 exon21 c.A2718G p.A906A AGAAGCAGAGAAG . 46.0 23.0 65.0 0.0 . 93 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 109695556 109695556 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RGAG1 NM_020769 exon3 c.A1711G p.T571A GCCATGACTTCTG . 63.0 6.0 70.0 0.0 . 132 RHOA 387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49400013 49400013 + Silent SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RHOA NM_001664 exon4 c.C324T p.P108P CACGTTGGGACAG . 111.0 39.0 120.0 0.0 . 1273 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 55534100 55534100 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . RP1 NM_006269 exon2 c.C574A p.Q192K GTCATGCAGCGCC . 92.0 44.0 61.0 0.0 . 102 SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 198266711 198266711 + Missense_Mutation SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SF3B1 NM_012433 exon15 c.A2221C p.K741Q TTACCTTTCCTCT . 169.0 60.0 155.0 0.0 . 140 SLC45A4 57210 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 142229096 142229096 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SLC45A4 NM_001080431 exon4 c.G490T p.G164W CCAGCCCACCCAG . 182.0 30.0 107.0 1.0 . 70 SLC6A2 6530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 55725901 55725901 + Silent SNP C C T rs180935423 TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SLC6A2 NM_001172501 exon6 c.C855T p.P285P GCTGCCCGGAGCC . 30.0 18.0 59.0 0.0 C|0.999;T|0.001 526 SPAG6 9576 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 22678098 22678098 + Frame_Shift_Del DEL C C - novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SPAG6 NM_172242 exon7 c.862delC p.L288fs TCACAGCTGGTAG . 107.0 37.0 74.0 0.0 . 153 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220336992 220336992 + Silent SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SPEG NM_005876 exon15 c.T3879C p.A1293A GGTGGCTGTGACG . 28.0 11.0 33.0 0.0 . 383 SRP54 6729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35492189 35492189 + Silent SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SRP54 NM_003136 exon14 c.G1230C p.S410S AGGATCGGGTGTA . 70.0 24.0 77.0 0.0 . 227 SSX2IP 117178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 85121516 85121516 + Missense_Mutation SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . SSX2IP NM_001166417 exon12 c.A1388T p.E463V AATACCTCCAATC . 61.0 25.0 73.0 0.0 . 92 STK31 56164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 23825118 23825118 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . STK31 NM_031414 exon18 c.A2170G p.M724V CTTACAATGAGCT . 90.0 21.0 100.0 0.0 . 338 STMN1 3925 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 26227524 26227524 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . STMN1 NM_005563 exon5 c.G433T p.E145X CAGTCTCGTCAGC . 125.0 44.0 108.0 0.0 . 90 TBCD 6904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 80851463 80851463 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TBCD NM_005993 exon17 c.A1604T p.D535V CAGCTGACTATTT . 430.0 231.0 312.0 0.0 . 22 TBR1 10716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162273138 162273138 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TBR1 NM_006593 exon1 c.G217A p.D73N TCCAAGGACTCAC . 64.0 28.0 62.0 0.0 . 91 TBX22 50945 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79283541 79283541 + Silent SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TBX22 NM_016954 exon7 c.T915G p.T305T TTTCACTCTCGAT . 55.0 9.0 63.0 0.0 . 628 TBX2 6909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 59485645 59485645 + Silent SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TBX2 NM_005994 exon7 c.C1917T p.T639T CACCACCGGGCTG . 187.0 54.0 96.0 0.0 . 226 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 167645700 167645700 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001122679 exon23 c.C4777G p.H1593D GGCATCCACCAAT . 186.0 36.0 105.0 0.0 . . TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 78369307 78369307 + Silent SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . . NM_001098816 exon34 c.G8106C p.A2702A GGCCCACGCTTGG . 69.0 28.0 44.0 0.0 . . TGFB2 7042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 218607497 218607497 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TGFB2 NM_001135599 exon4 c.A668T p.E223V GAGCAGAAGGCGA . 161.0 72.0 124.0 0.0 . 710 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 30010589 30010589 + Nonsense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TJP1 NM_003257 exon21 c.G3757T p.E1253X CCTCTTCTTCGGT . 93.0 29.0 75.0 0.0 . 95 TM6SF1 53346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 15 83795555 83795555 + Nonsense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TM6SF1 NM_023003 exon8 c.C757T p.Q253X CAATTTCAAGAGC . 98.0 40.0 62.0 0.0 . 91 TNK2 10188 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195596397 195596397 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TNK2 NM_001010938 exon12 c.G1748A p.R583H GGTGGGCGAGGTG . 28.0 7.0 25.0 0.0 . 957 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578457 7578457 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 TP53,NS,carcinoma,0 TP53 NM_000546 exon5 c.G473A p.R158H ATGGCGCGGACGC . 41.0 18.0 60.0 1.0 . 70225 TRIM36 55521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 114506870 114506870 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TRIM36 NM_001017397 exon2 c.C113T p.T38M TCCGTCGTCTTCC . 129.0 56.0 94.0 0.0 . 725 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77397736 77397736 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TRPM6 NM_017662 exon22 c.G2953C p.A985P CTATGGCCATGAT . 59.0 38.0 105.0 0.0 . 335 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 2122984 2122984 + Frame_Shift_Del DEL G G - novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TSC2 NM_001114382 exon21 c.2355delG p.Q785fs CAAACAGGTAGGA . 36.0 15.0 36.0 0.0 . 1908 TTBK1 84630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43214466 43214466 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TTBK1 NM_032538 exon2 c.T68C p.I23T CCGACATCCTGCC . 206.0 24.0 113.0 0.0 . 353 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179479034 179479034 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TTN NM_001267550 exon262 c.A49090G p.T16364A CATTGGTTACATC . 140.0 46.0 133.0 0.0 . 636 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179489420 179489420 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TTN NM_001267550 exon242 c.A44587G p.T14863A CGACCGTCTGGTC . 91.0 33.0 87.0 0.0 . 636 TUBB8 347688 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 93331 93331 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TUBB8 NM_177987 exon4 c.A1001G p.Q334R TTATCTTGAATGT . 95.0 7.0 100.0 0.0 . 69 TXNDC2 84203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 9886946 9886946 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . TXNDC2 NM_001098529 exon2 c.T470C p.I157T AACCCATCCAGCC . 140.0 55.0 138.0 0.0 . 92 USP19 10869 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 49153162 49153162 + Missense_Mutation SNP C C A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . USP19 NM_001199161 exon11 c.G1687T p.A563S CCGAGGCCAGGTG . 135.0 43.0 116.0 2.0 . 663 USP21 27005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161132173 161132173 + Silent SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . USP21 NM_012475 exon4 c.C774T p.L258L AGAGCTCACTGAA . 148.0 51.0 120.0 0.0 . 660 USP25 29761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 17250204 17250204 + Silent SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . USP25 NM_013396 exon23 c.C2889T p.V963V TATTGTCCCATTT . 167.0 59.0 170.0 0.0 . 663 WSCD2 9671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 108589818 108589818 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . WSCD2 NM_014653 exon2 c.T209C p.M70T GTGACATGCATCT . 48.0 17.0 63.0 0.0 . 136 WTAP 9589 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160163131 160163131 + Missense_Mutation SNP A A G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . WTAP NM_001270533 exon4 c.A98G p.Y33C AACAATATGAAGC . 158.0 64.0 240.0 1.0 . 90 ZKSCAN2 342357 broad.mit.edu;bcgsc.ca 37 16 25258229 25258229 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZKSCAN2 NM_001012981 exon5 c.G1288A p.A430T CACGGGCTGCAGG . 85.0 5.0 114.0 0.0 . 138 ZNF189 7743 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 104171388 104171388 + Missense_Mutation SNP G G C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF189 NM_003452 exon3 c.G1338C p.Q446H TATACAGCAGGAA . 33.0 4.0 45.0 0.0 . 229 ZNF266 10781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9525003 9525003 + Missense_Mutation SNP C C T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF266 NM_001271314 exon11 c.G598A p.A200T GCACAGCAAGGTC . 73.0 25.0 67.0 0.0 . 91 ZNF274 10782 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58718123 58718123 + Missense_Mutation SNP C C G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF274 . . . . TGGATCCTCTTCC . 106.0 44.0 87.0 0.0 . 91 ZNF398 57541 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 148876417 148876417 + Missense_Mutation SNP T T C novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF398 NM_170686 exon6 c.T1453C p.C485R TTCTCCTGCCCTC . 39.0 12.0 41.0 0.0 . 91 ZNF468 90333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 53352366 53352366 + Missense_Mutation SNP T T G novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF468 NM_001008801 exon3 c.A116C p.E39A TAATTCTCCAGCA . 17.0 7.0 13.0 0.0 . 92 ZNF571 51276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38056846 38056846 + Missense_Mutation SNP T T A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF571 NM_016536 exon4 c.A484T p.N162Y CTATATTATGATT . 79.0 29.0 65.0 0.0 . 90 ZNF653 115950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11598499 11598499 + Missense_Mutation SNP G G A novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZNF653 NM_138783 exon4 c.C779T p.P260L CACAGCGGGGTAC . 144.0 55.0 119.0 0.0 . 90 ZRANB1 54764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 126631850 126631850 + Missense_Mutation SNP A A T novel TCGA-MI-A75I-01A-11D-A32G-10 TCGA-MI-A75I-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c9dad44d-b8c3-40f4-83ee-da8c82890611 dc087f7d-68c4-44c3-aa12-a62a8bf3c9a3 . ZRANB1 NM_017580 exon1 c.A788T p.D263V AGACTGATTGGCT . 42.0 15.0 38.0 0.0 . 660