Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87168617 87168617 + Silent SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ABCB1 NM_000927 exon20 c.C2364A p.L788L GTATCGGAGCCGC . 46.0 10.0 29.0 0.0 . 582 AKAP11 11215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 42876851 42876851 + Silent SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AKAP11 NM_016248 exon8 c.A3969T p.P1323P ATTACCACCAAGT . 132.0 24.0 193.0 0.0 . 227 AKAP3 10566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 4737115 4737115 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AKAP3 NM_006422 exon4 c.T953A p.L318Q TTCTTCAGTAGGA . 120.0 35.0 108.0 0.0 . 292 ALS2CL 259173 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 46727834 46727834 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ALS2CL NM_001190707 exon6 c.A630G p.T210T AGCCTGTGTGGCC . 115.0 29.0 131.0 1.0 . 155 ANKLE1 126549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17397348 17397348 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_152363 exon9 c.A1835T p.Q612L ACATCCAGGCCCG . 91.0 25.0 82.0 0.0 . . ANKRD30B 374860 broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 14851875 14851875 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ANKRD30B NM_001145029 exon36 c.G3575A p.S1192N ATCAAAGTGTCAC . 120.0 23.0 143.0 0.0 . 24 AP1M1 8907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16319967 16319967 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AP1M1 NM_001130524 exon5 c.C525A p.V175V GGACGTCATCGAG . 122.0 25.0 144.0 0.0 . 156 ARHGEF18 23370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7528840 7528840 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ARHGEF18 NM_001130955 exon12 c.G2208A p.K736K CACCAAGAGTAAG . 80.0 22.0 104.0 0.0 . 228 ATP6V0A4 50617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138394373 138394373 + Missense_Mutation SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ATP6V0A4 NM_130841 exon20 c.C2425G p.H809D ACCAGTGCAGTCG . 67.0 13.0 85.0 0.0 . 91 AVIL 10677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58207158 58207158 + Missense_Mutation SNP C C G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . AVIL NM_006576 exon3 c.G190C p.G64R CCTTCCCGATCCA . 65.0 10.0 106.0 0.0 . 514 BRMS1 25855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66109566 66109566 + Splice_Site SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . BRMS1 NM_015399 exon3 c.139+1G>T . GGCTCACCGGAGC . 54.0 12.0 80.0 0.0 . 90 C2orf71 388939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 29294547 29294547 + Nonsense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . C2orf71 NM_001029883 exon1 c.G2581T p.E861X GGGTTTCCTTGGG . 109.0 35.0 119.0 0.0 . 91 C7orf72 100130988 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50135733 50135733 + Missense_Mutation SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . C7orf72 NM_001161834 exon1 c.T52A p.S18T AAAAGGTCCATCC . 129.0 30.0 140.0 0.0 . 23 CCDC96 257236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 7043534 7043534 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CCDC96 NM_153376 exon1 c.G1132A p.E378K TGTTCTCCAGCCG . 81.0 18.0 93.0 0.0 . 90 CEP89 84902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33370231 33370231 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CEP89 NM_032816 exon19 c.G2189T p.R730L ATTCTTCGGTTTT . 65.0 15.0 72.0 0.0 . 94 CLTB 1212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 175819809 175819809 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CLTB NM_007097 exon6 c.T656C p.L219P GACATGAGCACCG . 133.0 27.0 93.0 0.0 . 90 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 238253847 238253847 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . COL6A3 NM_004369 exon33 c.G7102T p.G2368C TGTTGCCCTTGGG . 86.0 13.0 113.0 0.0 . 526 CRAMP1L 57585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1676129 1676129 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_020825 exon2 c.A502T p.T168S TGGAGCACAGAGG . 95.0 16.0 90.0 0.0 . . CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266136 41266136 + Missense_Mutation SNP T T C rs121913407 bycluster TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 CTNNB1,NS,carcinoma,0 CTNNB1 NM_001098209 exon3 c.T133C p.S45P GCTCCTTCTCTGA . 157.0 48.0 169.0 0.0 . 24361 CXCL2 2920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 74964377 74964377 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CXCL2 NM_002089 exon3 c.A249G p.K83K ACAAGCTTTCTGC . 113.0 44.0 153.0 0.0 . 90 CYP7B1 9420 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 65537039 65537039 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . CYP7B1 NM_004820 exon2 c.G180T p.L60L TAAGTTCAGGACC . 212.0 157.0 105.0 0.0 . 93 DEK 7913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 18258580 18258580 + Missense_Mutation SNP T T C rs147997771 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DEK NM_003472 exon3 c.A202G p.M68V CTTGCATTGTCAA . 281.0 89.0 218.0 0.0 T|1.000;C|0.000 658 DHX8 1659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 41590858 41590858 + Silent SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DHX8 NM_004941 exon17 c.G2631T p.T877T GGTGACGCCTATT . 77.0 26.0 151.0 0.0 . 229 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124419244 124419244 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DNAH10 NM_207437 exon77 c.C13200T p.P4400P CAAACCCAAGGTG . 105.0 30.0 112.0 0.0 . 95 DNAH6 1768 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 84784866 84784866 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DNAH6 NM_001370 exon11 c.T1610G p.I537S ATGGTATTTTGGG . 166.0 35.0 159.0 0.0 . 69 DSE 29940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 116720771 116720771 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . DSE NM_001080976 exon2 c.A358T p.I120F GAGAACATTGAAG . 78.0 25.0 88.0 0.0 . 91 ENOX2 10495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129813673 129813673 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ENOX2 NM_182314 exon7 c.A390G p.V130V CACAAATACTGTT . 121.0 65.0 148.0 0.0 . 131 FAM19A2 338811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 62148740 62148740 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAM19A2 NM_178539 exon3 c.A172G p.I58V CTTCTATCTTGTT . 130.0 37.0 145.0 0.0 . 515 FAM83H 286077 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 144810754 144810754 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAM83H NM_198488 exon5 c.C877T p.R293C CCATGCGGGCCAG . 105.0 34.0 55.0 0.0 . 92 FANCD2 2177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 10076196 10076196 + Silent SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FANCD2 NM_001018115 exon4 c.G249C p.L83L GACCCTGAGGAGA . 133.0 27.0 163.0 0.0 . 229 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 45650881 45650882 + Frame_Shift_Ins INS - - A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FANCM NM_020937 exon16 c.4359_4360insA p.V1453fs TGCTGTCAAAAAG . 120.0 32.0 148.0 0.0 . 569 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187539094 187539094 + Silent SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FAT1 NM_005245 exon10 c.T8646C p.N2882N CTGGTAATTGTCT . 95.0 28.0 107.0 0.0 . 34 FGD6 55785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 95603889 95603889 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FGD6 NM_018351 exon2 c.A1171C p.N391H CACTGTTGGATTC . 85.0 22.0 109.0 0.0 . 137 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152277443 152277443 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FLG NM_002016 exon3 c.C9919A p.Q3307K ACTGCTGGTGGCG . 166.0 101.0 130.0 0.0 . 106 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 152287879 152287879 + Nonsense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . FLG NM_002016 exon2 c.T54A p.Y18X TTTTGAATATTGC . 437.0 87.0 327.0 0.0 . 106 GABRG2 2566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161569259 161569259 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GABRG2 NM_198903 exon8 c.G979A p.V327I CTCATTGTCGTCC . 178.0 39.0 168.0 0.0 . 95 GAPVD1 26130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 128094293 128094293 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GAPVD1 NM_015635 exon12 c.G2262T p.R754S TGTCAGGGAGGTC . 72.0 22.0 82.0 0.0 . 93 GPATCH8 23131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 42552196 42552196 + Splice_Site SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . GPATCH8 NM_001002909 exon3 c.120+1G>T . ATCTTACCGATTC . 106.0 27.0 112.0 0.0 . 94 HIF3A 64344 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 46815884 46815884 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HIF3A NM_152795 exon8 c.T999C p.S333S GGAGAGTATCGTC . 97.0 26.0 120.0 1.0 . 228 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 12122422 12122422 + Silent SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HIVEP1 NM_002114 exon4 c.A2394T p.P798P AAAACCAGTGGGA . 211.0 75.0 130.0 0.0 . 139 HLCS 3141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38128887 38128887 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HLCS NM_000411 exon11 c.G1965T p.G655G GTTGGGCCCTTTG . 159.0 44.0 155.0 0.0 . 157 HMGCLL1 54511 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 55378944 55378944 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . HMGCLL1 NM_019036 exon6 c.C534T p.S178S GCTAAAGGATTCA . 92.0 49.0 97.0 1.0 . 94 IGF2R 3482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160494446 160494446 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGF2R NM_000876 exon34 c.A4892G p.K1631R TGGACAAGCAGAC . 88.0 25.0 100.0 0.0 . 118 IGF2R 3482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 160523558 160523558 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGF2R NM_000876 exon46 c.T6850G p.F2284V GTGGGCTTTGACA . 158.0 31.0 192.0 0.0 . 118 IGSF9B 22997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 133790932 133790932 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . IGSF9B NM_014987 exon18 c.C2688T p.N896N GTCCTCGTTCTCC . 34.0 10.0 46.0 0.0 . 68 INSRR 3645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 156815580 156815580 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . INSRR NM_014215 exon10 c.G2005A p.D669N GCGGATCGTTGTT . 180.0 70.0 108.0 0.0 . 1403 KLF15 28999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 126071030 126071030 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KLF15 NM_014079 exon2 c.G736T p.V246F CCTTGACATTCTC . 141.0 38.0 137.0 0.0 . 91 KNDC1 85442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 135015133 135015133 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KNDC1 NM_152643 exon17 c.G3118T p.V1040L AGGTCCGTAAAAG . 112.0 35.0 101.0 0.0 . 229 KRT79 338785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53223841 53223841 + Missense_Mutation SNP T T G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KRT79 NM_175834 exon4 c.A821C p.Q274P ATCTCCTGGGTCA . 107.0 26.0 114.0 0.0 . 72 KRTAP19-1 337882 broad.mit.edu;ucsc.edu;mdanderson.org 37 21 31852477 31852477 + Nonsense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . KRTAP19-1 NM_181607 exon1 c.G160T p.G54X CATATCCGTAGCT . 116.0 23.0 106.0 1.0 . 68 L3MBTL2 83746 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41616796 41616796 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . L3MBTL2 NM_031488 exon7 c.G777T p.W259C CTTCTGGTGCAAC . 47.0 14.0 61.0 1.0 . 92 LINGO3 645191 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 2290105 2290105 + Silent SNP C C G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_001101391 exon2 c.G1671C p.G557G GTGCTGCCCGCGG . 121.0 29.0 166.0 0.0 . . MAP10 54627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 232943321 232943321 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_019090 exon1 c.A2552G p.Y851C CTTGCTATTCTGA . 113.0 17.0 105.0 0.0 . . MFSD3 113655 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 145735205 145735205 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MFSD3 NM_138431 exon1 c.G489T p.W163C CTCGTGGCCGCAA . 121.0 56.0 53.0 0.0 . 69 MTHFD2L 441024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 75040279 75040279 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MTHFD2L NM_001144978 exon2 c.T200C p.I67T AAGAAATACAGCG . 78.0 32.0 108.0 0.0 . 91 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 9088914 9088914 + Nonsense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . MUC16 NM_024690 exon1 c.G2901A p.W967X CTCTGGCCAAGTT . 131.0 35.0 163.0 0.0 . 566 NADKD1 133686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 36219713 36219713 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NADKD1 NM_001085411 exon5 c.A629G p.Y210C CCACGATAGAACT . 49.0 9.0 45.0 0.0 . 92 NAT10 55226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 34152419 34152419 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NAT10 NM_024662 exon13 c.G1304A p.S435N AACAGAGCGCCCA . 60.0 16.0 58.0 0.0 . 92 NCAM1 4684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 113103884 113103884 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NCAM1 NM_001242607 exon15 c.C1616T p.P539L CTTCACCATCCAT . 78.0 22.0 80.0 0.0 . 23 NLRX1 79671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 119054109 119054109 + Silent SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NLRX1 NM_024618 exon10 c.C2889A p.V963V CGAGGTCAGGGCC . 30.0 6.0 31.0 0.0 . 92 NPB 256933 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 79860624 79860624 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_148896 exon2 c.A378G p.X126W CGCCTGAGCCCGG . 177.0 53.0 159.0 0.0 . . NUDCD3 23386 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 44425666 44425666 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . NUDCD3 NM_015332 exon6 c.G1030T p.G344C GCTGGCCTCGGAA . 66.0 19.0 75.0 0.0 . 90 PCDHB13 56123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140595793 140595793 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PCDHB13 NM_018933 exon1 c.C2098A p.L700I TCTTCGCTCTTCC . 60.0 28.0 65.0 0.0 . 93 PCDHB16 57717 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140564287 140564287 + Missense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PCDHB16 NM_020957 exon1 c.G2153T p.R718M GGAGCAGGGCGGC . 80.0 45.0 88.0 0.0 . 92 PEG10 23089 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 94293280 94293280 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PEG10 NM_001172438 exon2 c.G640A p.E214K AAGCTGGAGCGCT . 62.0 23.0 79.0 0.0 . 23 PITPNM1 9600 ucsc.edu;bcgsc.ca 37 11 67266192 67266192 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PITPNM1 NM_001130848 exon10 c.G1359A p.V453V CGTCTGCACATCC . 38.0 4.0 52.0 0.0 . 227 POU4F1 5457 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 79175699 79175699 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . POU4F1 NM_006237 exon2 c.G1111A p.E371K AGGCCTCGAGGGA . 42.0 8.0 51.0 0.0 . 515 PYGO2 90780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 154931467 154931467 + Missense_Mutation SNP C C A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . PYGO2 NM_138300 exon3 c.G1009T p.V337L CGTTCACCTCACT . 100.0 24.0 59.0 0.0 . 227 RAD54L2 23132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 51690041 51690041 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . RAD54L2 NM_015106 exon19 c.G3081A p.Q1027Q TGTGCAGTCCACC . 72.0 20.0 109.0 0.0 . 93 SCRIB 23513 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 144885835 144885835 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SCRIB NM_015356 exon23 c.G3396A p.E1132E GATGCCCTCGTCT . 62.0 14.0 45.0 0.0 . 228 SLC12A4 6560 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67995581 67995581 + Missense_Mutation SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 SLC12A4,NS,carcinoma,+1 SLC12A4 NM_001145962 exon2 c.C245G p.S82W AGAGACGATACCT . 51.0 18.0 84.0 0.0 . 91 SLC8A3 6547 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 70634966 70634966 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SLC8A3 NM_183002 exon2 c.C174T p.V58V CAGGATGACACCC . 76.0 5.0 94.0 0.0 . 225 SLCO1B3 28234 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 21008043 21008043 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SLCO1B3 NM_019844 exon4 c.G166A p.E56K CAAATAGAAAGGA . 139.0 33.0 143.0 0.0 . 155 SMG1 23049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 16 18852978 18852978 + Nonsense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SMG1 NM_015092 exon41 c.C6605A p.S2202X AGTCCTGATCTTG . 184.0 85.0 181.0 0.0 . 1160 SMIM5 643008 broad.mit.edu;mdanderson.org 37 17 73636294 73636294 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_001162995 exon2 c.G13A p.D5N GCCACCGACTTCG . 52.0 12.0 59.0 1.0 . . SORCS2 57537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 7725465 7725465 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . SORCS2 NM_020777 exon19 c.C2466T p.D822D TGGGGACGGCTTC . 50.0 17.0 68.0 0.0 . 91 SRCIN1 80725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 36719591 36719591 + Silent SNP A A C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_025248 exon5 c.T708G p.A236A GTTGCGAGCCTCG . 79.0 15.0 63.0 0.0 . . ST14 6768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 130058517 130058517 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ST14 NM_021978 exon3 c.G334A p.E112K TCCACTGAGTTTG . 52.0 10.0 60.0 0.0 . 94 TAS2R1 50834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 9630121 9630121 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TAS2R1 NM_019599 exon1 c.C24T p.I8I AAAATAGATAATG . 261.0 119.0 234.0 1.0 . 93 TBATA 219793 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 72541762 72541764 + In_Frame_Del DEL CTT CTT - novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . . NM_152710 exon4 c.70_72del p.24_24del CCCTGACTTCTTC . 72.0 10.0 70.0 0.0 . . TGM5 9333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43552276 43552276 + Missense_Mutation SNP A A T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TGM5 NM_201631 exon3 c.T410A p.I137N AGCAGGATGAACT . 55.0 7.0 42.0 0.0 . 90 THBS4 7060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79351761 79351761 + Missense_Mutation SNP A A G novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . THBS4 NM_003248 exon3 c.A446G p.Q149R GCATCCAGGTGGA . 135.0 23.0 85.0 0.0 . 90 TMEM26 219623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 63195964 63195964 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TMEM26 NM_178505 exon2 c.A234G p.P78P TAATGATGGAACG . 40.0 12.0 56.0 0.0 . 90 TMEM51 55092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 15541674 15541674 + Missense_Mutation SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TMEM51 NM_018022 exon2 c.T91A p.W31R GCCATGTGGAACC . 36.0 16.0 39.0 0.0 . 90 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32064613 32064613 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TNXB NM_019105 exon3 c.G1017A p.T339T GCTCCGCGTACCA . 104.0 23.0 97.0 0.0 . 90 TPO 7173 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 1488563 1488563 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TPO NM_175719 exon9 c.C1534T p.P512S GAGCACCCCGACC . 79.0 18.0 131.0 1.0 . 332 TRAF3IP3 80342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 209953855 209953855 + Missense_Mutation SNP C C G rs147808288 TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRAF3IP3 NM_025228 exon15 c.C1353G p.N451K CCCTAACGAAGTG . 121.0 26.0 98.0 0.0 C|1.000;G|0.000 291 TRAK2 66008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202250957 202250957 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRAK2 NM_015049 exon14 c.A1947G p.A649A TCCACCTGCTGAA . 122.0 36.0 152.0 0.0 . 90 TRIM58 25893 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 248020828 248020828 + Missense_Mutation SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRIM58 NM_015431 exon1 c.C280T p.R94W GGGGCGCGGCGAT . 25.0 4.0 30.0 0.0 . 96 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 230661327 230661327 + Frame_Shift_Del DEL G G - novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRIP12 NM_004238 exon24 c.3571delC p.H1191fs ATACATGAAGAAA . 184.0 46.0 143.0 0.0 . 572 TRMT61A 115708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 103996384 103996384 + Silent SNP T T A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRMT61A NM_152307 exon2 c.T69A p.G23G CCATGGTGCAATG . 42.0 11.0 64.0 0.0 . 90 TROAP 10024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 49723688 49723688 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TROAP NM_005480 exon12 c.C1213T p.L405L AGGTCACTGGAGG . 127.0 8.0 121.0 0.0 . 91 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 31325061 31325061 + Missense_Mutation SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TRPM1 NM_001252020 exon21 c.C2834T p.A945V GAAATGGCCACGA . 126.0 29.0 170.0 0.0 . 94 TTC13 79573 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 231059660 231059660 + Missense_Mutation SNP G G C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TTC13 NM_024525 exon15 c.C1741G p.P581A GCACGGGCTGGTC . 120.0 22.0 77.0 1.0 . 92 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179593438 179593438 + Silent SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . TTN NM_001267550 exon66 c.A19215G p.E6405E AACACATTCCAAG . 181.0 54.0 197.0 0.0 . 636 VPS52 6293 ucsc.edu;bcgsc.ca 37 6 33218759 33218759 + Silent SNP C C T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . VPS52 NM_022553 exon20 c.G2031A p.A677A GGTCAGCGCTCCC . 44.0 4.0 45.0 0.0 . 95 ZNF16 7564 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 8 146157910 146157910 + Nonsense_Mutation SNP G G T novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ZNF16 NM_006958 exon3 c.C263A p.S88X GCCTGTGATTCCA . 500.0 48.0 239.0 0.0 . 95 ZNF366 167465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 71756953 71756953 + Missense_Mutation SNP T T C novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ZNF366 NM_152625 exon2 c.A371G p.Y124C GAGTCATACTTGG . 218.0 56.0 163.0 0.0 . 91 ZNF467 168544 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149462853 149462853 + Silent SNP G G A novel TCGA-O8-A75V-01A-11D-A32G-10 TCGA-O8-A75V-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed 296a0e3f-6a54-44cf-bb8d-480cda70d695 . ZNF467 NM_207336 exon5 c.C738T p.C246C CTCCGCGCACGGG . 116.0 30.0 113.0 1.0 . 90