Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ABCA3 21 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2338103 2338103 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ABCA3 NM_001089 exon21 c.C2928A p.S976S CAGCTGGGAGGTC . 23.0 11.0 37.0 1.0 . 1015 ABCA4 24 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 94510167 94510167 + Splice_Site SNP A A C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ABCA4 NM_000350 exon21 c.3050+2T>G . TCGCTTACTGGTG . 86.0 31.0 79.0 0.0 . 162 ABCC10 89845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43402429 43402429 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ABCC10 NM_001198934 exon4 c.G1451T p.R484L GAGCCCGAGTAGA . 103.0 29.0 53.0 0.0 . 96 ADAM11 4185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42854925 42854925 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ADAM11 NM_002390 exon22 c.C1857T p.I619I AGACATCAGTAGT . 64.0 28.0 63.0 0.0 . 227 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 33649699 33649699 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ADAMTS12 NM_030955 exon8 c.T1294C p.W432R TGGACCATGTCAG . 46.0 14.0 30.0 0.0 . 232 AFAP1L1 134265 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 148687115 148687115 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . AFAP1L1 NM_001146337 exon7 c.G686C p.R229P TGCTGCGGAAAAA . 56.0 23.0 45.0 0.0 . 136 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105414443 105414443 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . AHNAK2 NM_138420 exon7 c.G7345T p.V2449L CCTCCACGCTGGG . 57.0 20.0 60.0 0.0 . 47 AHR 196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 17375399 17375399 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . AHR NM_001621 exon9 c.G1149T p.Q383H AACTCAGAGACCA . 76.0 26.0 71.0 0.0 . 227 ANXA6 309 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 150516818 150516818 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ANXA6 NM_001155 exon6 c.A383G p.H128R AGCTGGTGCATCT . 74.0 28.0 66.0 1.0 . 22 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21236253 21236253 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . APOB NM_000384 exon25 c.C3995G p.S1332C TCTCGAGATGGCA . 56.0 20.0 59.0 0.0 . 175 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21255274 21255274 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . APOB NM_000384 exon10 c.A1304G p.D435G CGCTGATCCCTCG . 18.0 6.0 42.0 0.0 . 175 APOOL 139322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 84301522 84301522 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . APOOL NM_198450 exon2 c.A86G p.E29G AACAAGAGGAATC . 505.0 250.0 560.0 0.0 . 130 ATMIN 23300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 81076059 81076059 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ATMIN NM_015251 exon3 c.T636C p.T212T CCGAACTGGGCAC . 31.0 14.0 32.0 0.0 . 68 ATPAF1 64756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 47110923 47110923 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ATPAF1 NM_022745 exon7 c.A663G p.L221L AGCACATAGAAAC . 42.0 27.0 34.0 0.0 . 90 BCL11B 64919 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 99641711 99641711 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . BCL11B NM_138576 exon4 c.T1462A p.S488T CGTCGGAGCGGCC . 27.0 13.0 28.0 0.0 . 1147 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32706429 32706429 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . BIRC6 NM_016252 exon38 c.G7450C p.D2484H GAAATTGACCTTG . 215.0 110.0 210.0 0.0 . 233 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 13601419 13601419 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_148894 exon10 c.A7105T p.S2369C GCTTGCTCACTTC . 135.0 50.0 144.0 0.0 . . BTLA 151888 broad.mit.edu;ucsc.edu 37 3 112190146 112190146 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . BTLA NM_181780 exon3 c.C460A p.L154I ACAGGAGCCAGGG . 38.0 4.0 65.0 0.0 . 90 C1orf180 439927 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 85096333 85096333 + RNA SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . . . . . AGGATCTGAGGGC . 112.0 48.0 73.0 0.0 . . C1orf27 54953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186348970 186348970 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . C1orf27 NM_001164245 exon2 c.T53A p.I18K CAAACATAAATCT . 203.0 82.0 120.0 0.0 . 23 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2987241 2987241 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CARD11 NM_032415 exon3 c.C188T p.A63V ATAGGGGCATTAA . 121.0 61.0 118.0 0.0 . 870 CARD8 22900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48734142 48734142 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CARD8 NM_001184900 exon6 c.C664G p.L222V GCTGCAGGTCCAG . 28.0 8.0 27.0 0.0 . 227 CD300LB 124599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72519756 72519756 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CD300LB NM_174892 exon3 c.C516T p.T172T GCTGTTGGTAGGT . 87.0 34.0 77.0 0.0 . 91 CDC42BPA 8476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 227216680 227216680 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CDC42BPA NM_003607 exon29 c.C4005A p.T1335T GTGACGGGTCTTG . 56.0 14.0 26.0 0.0 . 549 CES1 1066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 55850865 55850865 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CES1 NM_001025195 exon8 c.T916C p.S306P CCAGAGATAAGAA . 60.0 9.0 53.0 0.0 . 68 CFTR 1080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 117307000 117307000 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CFTR NM_000492 exon27 c.C4281T p.I1427I TTCCATCCAGAAA . 105.0 47.0 89.0 0.0 . 518 CHML 1122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 241799048 241799048 + Silent SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CHML NM_001821 exon1 c.A21C p.T7T AAACTCTGTGGGA . 197.0 51.0 130.0 0.0 . 96 CHRM2 1129 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 136700608 136700608 + Frame_Shift_Del DEL A A - novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CHRM2 NM_001006632 exon3 c.996delA p.P332fs GACCCCAAAAAGT . 76.0 40.0 73.0 0.0 . 94 CIZ1 25792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 130929424 130929424 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CIZ1 NM_001257975 exon16 c.C2483A p.S828Y TCTCTGGATATAT . 60.0 29.0 53.0 0.0 . 92 CLDN18 51208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 137748665 137748665 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CLDN18 NM_016369 exon4 c.T530C p.V177A TGTTCGTGGGCTG . 62.0 33.0 106.0 0.0 . 92 CLIP2 7461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 73752825 73752825 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CLIP2 NM_032421 exon3 c.G169A p.A57T CCGGCCGCAGCTG . 79.0 34.0 72.0 0.0 . 93 CLMP 79827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 122954395 122954395 + Silent SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CLMP NM_024769 exon4 c.T549A p.S183S AATCCTAGATTTG . 44.0 10.0 61.0 0.0 . 91 CNBD1 168975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 88249211 88249211 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CNBD1 NM_173538 exon6 c.T642C p.Y214Y CGTGTATAAAAAT . 153.0 53.0 87.0 0.0 . 3 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 46911137 46911137 + Splice_Site SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . COL18A1 NM_130445 exon22 c.2068-2A>T . TCTTCCAGGGAGA . 165.0 69.0 146.0 0.0 . 90 COL2A1 1280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 48370680 48370680 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . COL2A1 NM_001844 exon48 c.A3350T p.D1117V CCTTTGTCACCTC . 41.0 17.0 55.0 0.0 . 92 COL4A6 1288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 107423750 107423750 + Nonsense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . COL4A6 NM_001847 exon25 c.T2129A p.L710X CCTGGTAATTCAG . 120.0 53.0 114.0 0.0 . 199 CPA5 93979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 130002351 130002351 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CPA5 NM_080385 exon8 c.C607A p.H203N ATCACCCATGCCA . 35.0 22.0 34.0 0.0 . 92 CRLF1 9244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 18710417 18710417 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 CRLF1,brain,glioma,+1 CRLF1 NM_004750 exon2 c.C355A p.R119S CGTCACGGGCGTG . 45.0 18.0 39.0 0.0 . 514 CROCC 9696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 17280833 17280833 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CROCC NM_014675 exon22 c.G3302T p.S1101I CCCAGAGCCGGCA . 71.0 31.0 58.0 0.0 . 137 CSAD 51380 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 53553988 53553988 + Missense_Mutation SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CSAD NM_015989 exon14 c.A1163C p.D388A AGACAGTCCACAC . 33.0 5.0 29.0 0.0 . 91 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113529405 113529405 + Silent SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CSMD3 NM_198123 exon28 c.T4614A p.T1538T ATTTCGAGTCCCA . 125.0 14.0 72.0 0.0 . 1132 CTBP2 1488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 126715391 126715391 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CTBP2 NM_022802 exon1 c.A938T p.Q313L AAGCCCTGCTGCA . 30.0 27.0 74.0 0.0 . 90 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266098 41266098 + Missense_Mutation SNP A A T rs121913396 bycluster TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 CTNNB1,gallbladder,other,+1 CTNNB1 NM_001098209 exon3 c.A95T p.D32V ACCTGGACTCTGG . 150.0 73.0 122.0 0.0 . 24361 CWC22 57703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 180851443 180851443 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . CWC22 NM_020943 exon4 c.A185G p.Y62C CTATCATAAGAAC . 60.0 23.0 46.0 0.0 . 90 DBC1 1620 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 121929740 121929740 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DBC1 NM_014618 exon8 c.C1908T p.G636G CACGGGGCCCTGG . 87.0 46.0 63.0 1.0 . 582 DBC1 1620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 121930107 121930107 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DBC1 NM_014618 exon8 c.C1541A p.T514N AAGAAGGTGTCGA . 68.0 25.0 57.0 0.0 . 582 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 155256019 155256019 + Splice_Site SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DCHS2 NM_017639 exon9 c.1216+1G>C . TACTTACTCAAGG . 26.0 9.0 47.0 0.0 . 94 DDX1 1653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 15736869 15736869 + Silent SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DDX1 NM_004939 exon4 c.A144T p.T48T AGAAACAGGAAGT . 528.0 236.0 474.0 1.0 . 253 DENND3 22898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 142190927 142190927 + Missense_Mutation SNP C C T rs201075864 TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DENND3 NM_014957 exon17 c.C2678T p.A893V CACAAGCGGTGGA . 66.0 16.0 25.0 0.0 C|0.999;T|0.001 91 DENND5B 160518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 31576572 31576572 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DENND5B NM_144973 exon11 c.A2429T p.Q810L CTGTCCTGAAATT . 134.0 85.0 134.0 0.0 . 24 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 38802359 38802359 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DNAH8 NM_001206927 exon32 c.G4307A p.G1436E AGGAAGGACCTAT . 256.0 70.0 177.0 0.0 . 615 DOCK10 55619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 225652011 225652011 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DOCK10 NM_014689 exon49 c.A5522T p.E1841V TGTTTCTCAAAGA . 61.0 24.0 73.0 0.0 . 92 DOPEY2 9980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 37618611 37618611 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DOPEY2 NM_005128 exon19 c.C4333T p.L1445L AAGCTGCTGCAGG . 49.0 14.0 30.0 0.0 . 91 DZIP1L 199221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 137787109 137787109 + Silent SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DZIP1L NM_173543 exon13 c.A1716C p.P572P ACGAGTTGGTGGG . 78.0 17.0 86.0 0.0 . 92 DZIP3 9666 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 108405433 108405433 + Splice_Site SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . DZIP3 NM_014648 exon28 c.3149+2T>A . ACCAGGTACCTTA . 152.0 40.0 202.0 1.0 . 91 EFHC2 80258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 44109644 44109644 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . EFHC2 NM_025184 exon5 c.C654A p.T218T TTTCAGGGTGTCG . 85.0 33.0 91.0 0.0 . 135 ENPP6 133121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 4 185074757 185074757 + Nonsense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ENPP6 NM_153343 exon2 c.G371A p.W124X GTGACCCACAGAG . 113.0 55.0 130.0 0.0 . 90 ERP44 23071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 102784454 102784454 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ERP44 NM_015051 exon5 c.G341A p.R114H CCATTACGAAACA . 243.0 52.0 220.0 0.0 . 90 FAIM3 9214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207087190 207087190 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FAIM3 NM_005449 exon2 c.A287G p.E96G TCACTTTCTGTCA . 190.0 52.0 133.0 0.0 . 90 FAM163A 148753 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 179783084 179783084 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FAM163A NM_173509 exon5 c.T264C p.C88C GCCCTGTGGGGTG . 57.0 20.0 62.0 1.0 . 91 FAM189A1 23359 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 29429300 29429300 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FAM189A1 NM_015307 exon6 c.C728T p.P243L GGGAGTGGGGGGA . 21.0 8.0 28.0 0.0 . 22 FBLN2 2199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 13612450 13612450 + Missense_Mutation SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FBLN2 NM_001998 exon2 c.T595G p.Y199D TACAGCTATGACC . 62.0 23.0 41.0 0.0 . 91 FBXO44 93611 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 11718615 11718615 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FBXO44 NM_033182 exon4 c.G418A p.D140N GTGGTGGACCTCA . 39.0 18.0 47.0 0.0 . 227 FLAD1 80308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 154961247 154961247 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FLAD1 NM_025207 exon2 c.C1039A p.P347T CGTTTGCCCCAGG . 71.0 25.0 41.0 0.0 . 93 FOXM1 2305 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 2983155 2983155 + Missense_Mutation SNP G G A rs143720765 byfrequency TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FOXM1 NM_001243089 exon2 c.C490T p.R164W TCTCCCGTTTCTG . 141.0 78.0 145.0 1.0 G|1.000;A|0.000 227 FRMD4B 23150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 69221075 69221075 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FRMD4B NM_015123 exon23 c.C3042T p.N1014N CTCCAGGTTGTCT . 143.0 53.0 171.0 0.0 . 72 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 186670102 186670102 + Nonsense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FSIP2 NM_173651 exon17 c.G16336T p.E5446X GTATATGAACAGT . 168.0 85.0 217.0 0.0 . 90 FUT5 2527 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 5866696 5866696 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . FUT5 NM_002034 exon2 c.A1041T p.A347A AGCCAGTGCCCAG . 115.0 41.0 115.0 0.0 . 90 GLB1 2720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 33110391 33110391 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . GLB1 NM_000404 exon3 c.A317T p.Y106F AGAAAATATTCCA . 78.0 35.0 75.0 0.0 . 135 GLB1L3 112937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 134188589 134188589 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . GLB1L3 NM_001080407 exon19 c.C1844A p.P615H TTGGGCCTCAGAA . 84.0 37.0 120.0 0.0 . 69 GPR45 11250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 105858703 105858703 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . GPR45 NM_007227 exon1 c.G388A p.V130M ATCAGCGTGGACC . 117.0 64.0 114.0 0.0 . 154 GRIN2D 2906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 48925128 48925128 + Nonsense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . GRIN2D NM_000836 exon10 c.T2178A p.Y726X CAACTATCCCGAC . 87.0 28.0 93.0 0.0 . 156 H1FOO 132243 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 129266304 129266304 + Silent SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . H1FOO NM_153833 exon2 c.C159A p.P53P CCACCCCCCGGTG . 43.0 10.0 85.0 0.0 . 91 HCN4 10021 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 73615218 73615218 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HCN4 NM_005477 exon8 c.C3216T p.P1072P GAGCGGGGGTGTG . 21.0 14.0 29.0 0.0 . 96 HMCN1 83872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186056637 186056637 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HMCN1 NM_031935 exon60 c.A9223T p.T3075S GAGGGAACTTCTG . 113.0 44.0 85.0 0.0 . 113 HMGN5 79366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 80370663 80370663 + Nonsense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HMGN5 NM_030763 exon7 c.G334T p.G112X CTCCTCCCTTTTC . 532.0 257.0 547.0 0.0 . 130 HNRNPH1 3187 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 179045165 179045165 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HNRNPH1 NM_001257293 exon6 c.G696T p.R232S ACCACGCCTCATC . 83.0 51.0 104.0 2.0 . 22 HPSE2 60495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 100995494 100995494 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HPSE2 NM_001166246 exon1 c.A66T p.L22L CGGGGCTAGGCAC . 102.0 49.0 103.0 0.0 . 91 HTR3D 200909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183756700 183756700 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . HTR3D NM_001163646 exon8 c.C1302A p.F434L GCTCTTCCGCCTC . 85.0 23.0 95.0 0.0 . 90 IDI1 3422 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 1094803 1094803 + Splice_Site SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . IDI1 NM_004508 exon2 c.140+1G>A . ACAGTACCTGATC . 52.0 22.0 56.0 0.0 . 90 IFNA6 3443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 21350829 21350829 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . IFNA6 NM_021002 exon1 c.T58A p.C20S GAGAGCAGCTTGA . 69.0 23.0 87.0 0.0 . 68 IL1RAPL2 26280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105011034 105011034 + Nonsense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . IL1RAPL2 NM_017416 exon11 c.A1441T p.R481X ATTCTCAGACGGG . 236.0 112.0 227.0 0.0 . 194 IL31RA 133396 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 55178923 55178923 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . IL31RA NM_001242637 exon5 c.A506T p.K169I GCATCAAACGAAT . 114.0 54.0 122.0 0.0 . 91 ILDR1 286676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121712723 121712723 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ILDR1 NM_001199799 exon7 c.A873T p.K291N CAGTTCTTTCTCC . 30.0 17.0 25.0 0.0 . 91 INADL 10207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 62516654 62516654 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . INADL NM_176877 exon31 c.A4049T p.E1350V GCACCGAACCTAT . 42.0 20.0 48.0 0.0 . 94 ITGA10 8515 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 145532113 145532113 + Splice_Site SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ITGA10 NM_003637 exon8 c.759-2A>T . CTTCTCAGCACAG . 24.0 11.0 26.0 0.0 . 231 ITGA9 3680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 37574811 37574811 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ITGA9 NM_002207 exon14 c.G1380T p.R460S AGCAAGGCCTGTC . 43.0 22.0 45.0 0.0 . 715 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54783459 54783459 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_198510 exon8 c.C3048T p.S1016S GAACTTGGATTCC . 47.0 22.0 37.0 0.0 . . KANSL2 54934 ucsc.edu;bcgsc.ca 37 12 49061538 49061538 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_017822 exon7 c.C911A p.A304D ACAAAGGCCAAGC . 23.0 4.0 32.0 0.0 . . KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 211093249 211093249 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KCNH1 NM_172362 exon7 c.A1195T p.S399C CAATGCTGTACCA . 227.0 70.0 138.0 0.0 . 94 KCNH3 23416 broad.mit.edu;mdanderson.org 37 12 49943273 49943273 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KCNH3 NM_012284 exon9 c.C1518T p.R506R CCAGCGCATGTAC . 35.0 11.0 47.0 0.0 . 90 KCNK10 54207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 88652001 88652001 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KCNK10 NM_138318 exon7 c.T1510A p.S504T TGCTGGAGTTGTC . 254.0 122.0 219.0 1.0 . 95 KCNQ3 3786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133192469 133192469 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KCNQ3 NM_004519 exon4 c.C712A p.L238M TCCGCAGCATGCG . 57.0 9.0 35.0 0.0 . 138 KIAA0556 23247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27751968 27751968 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIAA0556 NM_015202 exon15 c.T2350A p.W784R CTGGCCTGGAAGG . 26.0 12.0 26.0 0.0 . 141 KIAA1109 84162 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 123268771 123268771 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIAA1109 NM_015312 exon74 c.G12966A p.Q4322Q GGAGCAGCCAAGT . 105.0 40.0 131.0 1.0 . 80 KIAA1522 57648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 33235646 33235646 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIAA1522 NM_020888 exon6 c.A866T p.E289V AGACAGAGGCCAT . 64.0 24.0 50.0 0.0 . 90 KIAA1614 57710 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 180904469 180904469 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIAA1614 NM_020950 exon5 c.T1424A p.V475E GCCAGGTGCTGAG . 47.0 22.0 31.0 0.0 . 26 KIF18B 146909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 43010040 43010040 + Splice_Site SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIF18B NM_001264573 exon10 c.1238+1G>T . AACTCACTGTTCT . 27.0 11.0 22.0 0.0 . 70 KIF20B 9585 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 91520384 91520384 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KIF20B NM_016195 exon28 c.T4662C p.N1554N CAGAAATAAAATA . 108.0 54.0 88.0 1.0 . 93 KRT25 147183 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 38907463 38907463 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KRT25 NM_181534 exon4 c.T785A p.L262H TCTGCAAGGGCTT . 74.0 36.0 89.0 1.0 . 92 KRT31 3881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39550414 39550414 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KRT31 NM_002277 exon7 c.A1105T p.S369C GATTGCTGGGCAG . 53.0 27.0 44.0 0.0 . 90 KTN1 3895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 56122805 56122805 + Silent SNP A A G rs143735954 TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . KTN1 NM_004986 exon29 c.A2847G p.L949L CATGCTAAAAGAG . 278.0 127.0 249.0 1.0 A|1.000;G|0.000 1147 LATS1 9113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 6 150005471 150005471 + Nonsense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 LATS1,NS,carcinoma,+1 LATS1 NM_001270519 exon4 c.A754T p.R252X GGCCTCTTGGAGG . 52.0 46.0 88.0 0.0 . 992 LYL1 4066 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 13211833 13211833 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . LYL1 NM_005583 exon2 c.C153T p.S51S GGGCGAGGAGCCT . 32.0 8.0 45.0 0.0 . 658 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39929343 39929343 + Silent SNP A A C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MACF1 NM_012090 exon91 c.A15561C p.G5187G GATCGGAGAGAAT . 134.0 65.0 92.0 0.0 . 165 MAGEA8 4107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 149013280 149013280 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MAGEA8 NM_005364 exon3 c.T234A p.T78T CAGCACTCTGTGG . 62.0 27.0 56.0 0.0 . 130 MDM2 4193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 69233083 69233083 + Missense_Mutation SNP A A C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MDM2 NM_002392 exon11 c.A948C p.E316D CAATGAAATGAAT . 33.0 16.0 45.0 0.0 . 1270 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49433836 49433836 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MLL2 NM_003482 exon31 c.G7717A p.G2573S GCTTGCCCAAGGT . 53.0 8.0 60.0 0.0 . 612 MPHOSPH9 10198 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 123702951 123702951 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MPHOSPH9 NM_022782 exon2 c.A512T p.E171V CTTTGCTCATTTC . 312.0 76.0 349.0 0.0 . 514 MTERF 7978 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 91503797 91503797 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MTERF NM_006980 exon3 c.A311T p.E104V TCCTGCTCATTGG . 91.0 35.0 92.0 0.0 . 90 MTSS1L 92154 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 70698128 70698128 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MTSS1L NM_138383 exon15 c.C1696T p.R566C GTGTGCGGCGGAT . 41.0 21.0 30.0 0.0 . 68 MXD1 4084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 70165400 70165400 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MXD1 NM_002357 exon6 c.C650T p.A217V ACAAGGCGTGTCT . 79.0 33.0 71.0 0.0 . 226 MYD88 4615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 38181897 38181897 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MYD88 NM_002468 exon3 c.T521A p.F174Y AGCGTTTCGATGC . 84.0 38.0 58.0 0.0 . 901 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1843065 1843065 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . MYT1L NM_015025 exon21 c.C2930G p.P977R GCCAAGGGGCACC . 52.0 31.0 63.0 0.0 . 95 NCOA1 8648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24881562 24881562 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NCOA1 NM_147223 exon3 c.G16T p.D6Y CTCGGGGACAGTT . 75.0 34.0 87.0 0.0 . 228 NETO1 81832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 70417483 70417483 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NETO1 NM_001201465 exon9 c.C1355A p.A452D ATAGAAGCATCTC . 202.0 117.0 170.0 0.0 . 94 NHS 4810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 17745541 17745541 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NHS NM_198270 exon6 c.T3252C p.R1084R CCACCGTCATCCA . 143.0 75.0 143.0 0.0 . 197 NOTCH4 4855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32170085 32170085 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NOTCH4 NM_004557 exon21 c.G3523T p.A1175S CCTTGGCTCCGGG . 60.0 21.0 42.0 0.0 . 1321 NOX1 27035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100104832 100104832 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NOX1 NM_013955 exon10 c.C1225G p.P409A CAAAGGGGGTGAC . 293.0 163.0 241.0 0.0 . 131 NOX3 50508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155774563 155774563 + Silent SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NOX3 NM_015718 exon4 c.C315T p.V105V ATAGGCGACCAGT . 63.0 57.0 174.0 0.0 . 91 NR0B2 8431 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27240140 27240140 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NR0B2 NM_021969 exon1 c.C292A p.L98I ACCCAAGCAGGAA . 59.0 38.0 55.0 1.0 . 186 NR4A2 4929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 157186238 157186238 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . NR4A2 NM_006186 exon3 c.A461T p.Q154L TAGTTCTGGTGGA . 88.0 39.0 75.0 0.0 . 189 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228528927 228528927 + Silent SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OBSCN NM_001271223 exon84 c.C20700A p.V6900V TACCGTCAGCTAC . 72.0 17.0 38.0 0.0 . 403 OPN4 94233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 88415951 88415951 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OPN4 NM_033282 exon2 c.A184G p.T62A CTCCCCACGGTTG . 104.0 43.0 105.0 0.0 . 69 OR52R1 119695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4824853 4824853 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OR52R1 NM_001005177 exon1 c.C758A p.A253D TAAAGAGCCAAGA . 58.0 13.0 50.0 0.0 . 69 OR6C2 341416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 55846722 55846722 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OR6C2 NM_054105 exon1 c.A725T p.H242L CATCCCACATGAT . 134.0 47.0 175.0 0.0 . 70 OR9A4 130075 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141618728 141618728 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OR9A4 NM_001001656 exon1 c.G53T p.G18V TCCCTGGCTCTGA . 125.0 43.0 145.0 1.0 . 91 OSBPL7 114881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45890656 45890656 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OSBPL7 NM_145798 exon16 c.A1713G p.R571R GAAGCCTCGGTCA . 30.0 13.0 26.0 0.0 . 68 OTOP1 133060 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 4 4228502 4228502 + Silent SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OTOP1 NM_177998 exon1 c.T90A p.P30P CGAGGGAGGCGAG . 15.0 11.0 8.0 0.0 . 92 OXCT1 5019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 41739504 41739504 + Silent SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . OXCT1 NM_000436 exon16 c.G1509C p.G503G ATCACACCCAGTA . 128.0 52.0 123.0 0.0 . 133 P2RX6 9127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 21369505 21369505 + Silent SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_001159554 exon1 c.A42T p.P14P CTCCCCAGGGGCT . 40.0 18.0 35.0 0.0 . . PAK4 10298 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 39664257 39664257 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PAK4 NM_001014832 exon4 c.G705T p.G235G AGCGGGGGGCCTG . 28.0 17.0 24.0 0.0 . 957 PCDHA6 56142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140209357 140209357 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PCDHA6 NM_018909 exon1 c.A1681T p.N561Y AACGACAACGCGC . 56.0 26.0 51.0 0.0 . 92 PCDHB6 56130 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 140531345 140531345 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PCDHB6 NM_018939 exon1 c.T1507A p.S503T CTGGTCTCCATCA . 42.0 14.0 36.0 0.0 . 91 PDE6A 5145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 149314265 149314265 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PDE6A NM_000440 exon2 c.A491G p.D164G ACAAAGTCACAGA . 68.0 30.0 66.0 0.0 . 92 PHF20 51230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34451299 34451299 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PHF20 NM_016436 exon6 c.G785A p.R262K GAGGCAGACCCCC . 78.0 31.0 76.0 0.0 . 515 PI3 5266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43804641 43804641 + Silent SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PI3 NM_002638 exon2 c.T219G p.P73P TAAGCCTGGCTCC . 89.0 48.0 69.0 0.0 . 514 PION 54103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 76982269 76982269 + Missense_Mutation SNP A A C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PION NM_017439 exon18 c.T1483G p.W495G TATTCCAAGTGAG . 92.0 41.0 113.0 0.0 . 514 PIP4K2A 5305 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 22829005 22829005 + Splice_Site SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PIP4K2A NM_005028 exon10 c.1037-2A>T . CGAGTCTGCAGAG . 46.0 22.0 36.0 0.0 . 665 PLB1 151056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 28824137 28824137 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PLB1 NM_153021 exon37 c.G2545A p.D849N CATGAAGACTGGA . 78.0 37.0 79.0 0.0 . 141 PLCB1 23236 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 8608977 8608977 + Missense_Mutation SNP A A T rs199888561 alternate_allele TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PLCB1 NM_015192 exon4 c.C283T p.P95S GGGAACATCGGGC . 120.0 59.0 83.0 1.0 A|0.999;G|0.001 297 PLEKHG4 25894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67320230 67320230 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PLEKHG4 NM_001129728 exon15 c.T2496C p.D832D CTCCGATGCCCTG . 63.0 27.0 45.0 0.0 . 92 PMP22 5376 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 15162456 15162456 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PMP22 NM_153322 exon2 c.T133C p.S45P AGGAAGAGGTGCT . 51.0 46.0 74.0 0.0 . 90 POLQ 10721 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121264699 121264699 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . POLQ NM_199420 exon1 c.A26T p.K9I CGCCGTTTCCCAC . 40.0 15.0 37.0 0.0 . 664 POU3F4 5456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 82764109 82764109 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . POU3F4 NM_000307 exon1 c.G777T p.A259A GGAGGCGGATTCG . 127.0 54.0 114.0 0.0 . 131 PTK2B 2185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 27315905 27315905 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . PTK2B NM_173174 exon36 c.A2909T p.E970V TAAGTGAGGAGTG . 16.0 15.0 43.0 0.0 . 1378 RAB18 22931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 27793366 27793366 + Missense_Mutation SNP G G C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RAB18 NM_001256411 exon1 c.G68C p.S23T AGTCCAGGTGAGG . 55.0 31.0 44.0 0.0 . 227 RAPGEF5 9771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 22259519 22259519 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RAPGEF5 NM_012294 exon9 c.A503T p.Q168L TCCGTCTGCAAAA . 153.0 76.0 161.0 0.0 . 206 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 109693862 109693862 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RGAG1 NM_020769 exon3 c.A17G p.H6R CCTTACATTCACT . 65.0 29.0 61.0 0.0 . 132 RHBDL3 162494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 30621329 30621329 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RHBDL3 NM_138328 exon5 c.A536G p.Y179C TCCTCTACAATGG . 118.0 55.0 112.0 0.0 . 91 RIMS1 22999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 73102430 73102430 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RIMS1 NM_014989 exon31 c.T4536A p.A1512A GGGAGCTGACAGT . 72.0 64.0 126.0 0.0 . 144 RNF40 9810 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30779293 30779293 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RNF40 NM_014771 exon12 c.G1508A p.R503Q CCCAGCGATACAA . 49.0 17.0 51.0 0.0 . 226 RNU6-71 100873774 broad.mit.edu;ucsc.edu;mdanderson.org 37 6 56468122 56468122 + RNA SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . . . . . GGCCTCTGGGAAA . 134.0 38.0 95.0 0.0 . . ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 78737868 78737868 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ROBO1 NM_002941 exon9 c.C1100A p.T367N GTTACAGTCCGTC . 51.0 16.0 57.0 0.0 . 67 RRAGA 10670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 19050112 19050112 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RRAGA NM_006570 exon1 c.C455T p.S152F GTCTGTCTCGCCC . 52.0 18.0 62.0 0.0 . 90 RTL1 388015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 101350239 101350239 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RTL1 NM_001134888 exon1 c.A887T p.Q296L CCGCCCTGCCTGA . 33.0 16.0 34.0 0.0 . 46 RUFY3 22902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 71659507 71659507 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RUFY3 NM_001037442 exon13 c.G1343A p.R448H GATTGCGCCAGGC . 195.0 41.0 155.0 0.0 . 90 RUNX2 860 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 45296466 45296466 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . RUNX2 NM_001024630 exon2 c.G3T p.M1I GACTATGGCATCA . 156.0 92.0 105.0 1.0 . 417 SALL1 6299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 51174758 51174758 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SALL1 NM_002968 exon2 c.G1375A p.G459R CACTCCCAAAGAC . 52.0 26.0 57.0 0.0 . 98 SEC31B 25956 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 102269083 102269083 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SEC31B NM_015490 exon4 c.A389G p.N130S AAAGGATTCAAGT . 70.0 22.0 70.0 0.0 . 91 SHANK1 50944 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51169670 51169670 + Silent SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SHANK1 NM_016148 exon22 c.A5547G p.P1849P CAGAGGTGGTGGC . 53.0 27.0 56.0 0.0 . 153 SIRPB1 10326 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 1551748 1551748 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SIRPB1 NM_006065 exon4 c.A787G p.R263G CTGCCCTCATGGG . 101.0 48.0 77.0 1.0 . 91 SLAMF7 57823 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160720138 160720138 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SLAMF7 NM_021181 exon4 c.C694A p.L232M TGTCTCCTGTTGG . 183.0 72.0 208.0 1.0 . 93 SLC10A4 201780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 48490859 48490859 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SLC10A4 NM_152679 exon3 c.A1217T p.Y406F TTTCTTATAAAAA . 76.0 34.0 60.0 0.0 . 90 SLC12A8 84561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 124826958 124826958 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SLC12A8 NM_024628 exon10 c.A1072G p.K358E GTGTTTTGTTTGG . 49.0 14.0 48.0 0.0 . 22 SLC36A2 153201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150701730 150701730 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SLC36A2 NM_181776 exon9 c.A1057T p.T353S CATAGGTGCACAG . 63.0 26.0 49.0 0.0 . 91 SLC41A3 54946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 125769824 125769824 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SLC41A3 NM_017836 exon3 c.A343T p.N115Y CCAGGTTCCCCTT . 25.0 15.0 30.0 0.0 . 90 SMAD3 4088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 67477190 67477190 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SMAD3 NM_005902 exon7 c.A997G p.K333E GTCTGCAAGATCC . 43.0 24.0 57.0 0.0 . 904 SPAG17 200162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 118623785 118623785 + Silent SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SPAG17 NM_206996 exon15 c.T2148C p.D716D TCTATTATCAGGG . 150.0 66.0 152.0 0.0 . 158 SPATA31D4 389761 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 84547809 84547809 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_001145197 exon4 c.C2733T p.P911P GAAGCCCATATTA . 172.0 56.0 173.0 0.0 . . SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158589013 158589013 + Silent SNP T T G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SPTA1 NM_003126 exon45 c.A6529C p.R2177R CACACCTGGTTTC . 107.0 39.0 108.0 0.0 . 142 STAB1 23166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52558211 52558211 + Silent SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . STAB1 NM_015136 exon68 c.C7638T p.T2546T CGACACCTTTTGT . 86.0 48.0 62.0 0.0 . 139 STAC 6769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 36485045 36485045 + Missense_Mutation SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . STAC NM_003149 exon2 c.C301G p.L101V GCTGGTCTGCATC . 41.0 23.0 36.0 0.0 . 94 SUGP2 10147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 19136956 19136956 + Silent SNP T T A rs144099788 alternate_allele TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SUGP2 NM_014884 exon3 c.A201T p.G67G TACAGATCCACTG . 23.0 8.0 27.0 0.0 T|1.000;C|0.000 91 SULF1 23213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 70541750 70541750 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SULF1 NM_001128205 exon19 c.A2120T p.Q707L CTGCTCAGGAAGT . 224.0 54.0 117.0 0.0 . 518 SYT9 143425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 7437386 7437386 + Silent SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . SYT9 NM_175733 exon4 c.A1158G p.G386G AACAGGAGCATCA . 52.0 14.0 67.0 0.0 . 155 TBX18 9096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 85446945 85446945 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TBX18 NM_001080508 exon8 c.A1282T p.N428Y ATCGGTTGAGGGT . 72.0 66.0 100.0 0.0 . 73 TERF1 7013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 73939235 73939235 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TERF1 NM_017489 exon6 c.A835T p.S279C AAACCTAGTGGTA . 42.0 10.0 24.0 0.0 . 228 TGM6 343641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2384055 2384055 + Silent SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TGM6 NM_198994 exon8 c.C1002G p.V334V CCATGTCTGGAAT . 72.0 35.0 60.0 0.0 . 94 TGM7 116179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43574767 43574767 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TGM7 NM_052955 exon8 c.A1056T p.P352P GTATCCTGGTGGG . 41.0 23.0 41.0 0.0 . 92 THAP4 51078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242542471 242542471 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_015963 exon4 c.C1424T p.T475M TTGCGCGTGTCCG . 23.0 13.0 31.0 0.0 . . THEMIS 387357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 128134158 128134158 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . THEMIS NM_001010923 exon4 c.T1628C p.M543T CTCCGCATCATGT . 35.0 31.0 77.0 0.0 . 94 TMEM163 81615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 135260482 135260482 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TMEM163 NM_030923 exon5 c.T545C p.L182P TCTGGGAGCAGCC . 94.0 39.0 96.0 0.0 . 90 TMEM63B 55362 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 44116103 44116103 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TMEM63B NM_018426 exon13 c.A1102G p.N368D TTCCACAATGAGA . 63.0 12.0 25.0 0.0 . 92 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175046732 175046732 + Missense_Mutation SNP G G A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TNN NM_022093 exon2 c.G178A p.A60T GTTGACGCTGACC . 96.0 49.0 77.0 0.0 . 138 TOP1MT 116447 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144408432 144408432 + Missense_Mutation SNP T T C novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TOP1MT NM_052963 exon4 c.A443G p.K148R GCGGCCTTGTCCA . 163.0 9.0 68.0 0.0 . 91 TRAP1 10131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3716009 3716009 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TRAP1 NM_016292 exon12 c.G1346A p.R449Q CCCTCCCGCATGA . 95.0 41.0 88.0 0.0 . 226 TRIM31 11074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30080321 30080321 + Missense_Mutation SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TRIM31 NM_007028 exon2 c.T262C p.S88P TTTTGGACTGCAC . 126.0 35.0 85.0 0.0 . 658 TRIM49 57093 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 89531677 89531677 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TRIM49 NM_020358 exon8 c.G980A p.S327N AGAAAACTTCTAG . 74.0 17.0 96.0 0.0 . 84 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77435310 77435310 + Silent SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TRPM6 NM_017662 exon9 c.C1044A p.I348I CATGCAGATGATC . 52.0 18.0 32.0 0.0 . 335 TSPYL6 388951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 54482488 54482488 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TSPYL6 NM_001003937 exon1 c.A801T p.R267S TTGGCCTCTAATC . 95.0 49.0 74.0 0.0 . 90 TUBB8 347688 broad.mit.edu;mdanderson.org 37 10 93652 93652 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TUBB8 NM_177987 exon4 c.A680T p.H227L ACCAGGTGGTTCA . 24.0 9.0 20.0 0.0 . 69 TUBGCP5 114791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 22848918 22848918 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . TUBGCP5 NM_052903 exon10 c.A965T p.Q322L ATGGCCAGGTTGT . 52.0 27.0 62.0 0.0 . 91 UGGT1 56886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 128870806 128870806 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . UGGT1 NM_020120 exon6 c.A670T p.N224Y AAAATCAATTATG . 247.0 93.0 275.0 0.0 . 91 UGT2B4 7363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 70346460 70346460 + Silent SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . UGT2B4 NM_021139 exon6 c.G1479C p.V493V CCCAGTCACATCC . 107.0 55.0 117.0 0.0 . 92 ULK2 9706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 19698995 19698995 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ULK2 NM_001142610 exon20 c.C2041A p.P681T ATATAGGAGTCTT . 116.0 109.0 204.0 0.0 . 334 UNC13A 23025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 17716933 17716933 + Missense_Mutation SNP G G T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . UNC13A NM_001080421 exon42 c.C5042A p.A1681D TCCTTGGCCACCT . 53.0 16.0 76.0 0.0 . 25 UNC45B 146862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33504605 33504605 + Missense_Mutation SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . UNC45B NM_173167 exon17 c.T2237A p.L746Q CCAACCTGTCTGG . 47.0 24.0 31.0 0.0 . 157 UNK 85451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73805856 73805856 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . UNK NM_001080419 exon2 c.C120A p.F40L AGAATTCCGCACA . 54.0 21.0 45.0 0.0 . 68 VAV1 7409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6773000 6773000 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . VAV1 NM_005428 exon1 c.A182T p.N61I AGGTCAACCTGCG . 67.0 29.0 78.0 0.0 . 1276 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 82816442 82816442 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . VCAN NM_004385 exon7 c.A2317T p.T773S ACAGCAACTCCAG . 53.0 27.0 45.0 0.0 . 238 VPS37D 155382 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 73085576 73085576 + Missense_Mutation SNP C C T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . VPS37D NM_001077621 exon4 c.C626T p.A209V CACCAGCAGTGCC . 40.0 17.0 36.0 0.0 . 68 VPS72 6944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151156881 151156881 + Silent SNP T T A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . VPS72 NM_001271087 exon4 c.A474T p.R158R CCCCTTTCGCCGT . 77.0 36.0 55.0 0.0 . 154 VTA1 51534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 142468439 142468439 + Silent SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . VTA1 NM_016485 exon1 c.A15G p.A5A GCTTGCACCGCTG . 22.0 18.0 35.0 0.0 . 90 ZC2HC1A 51101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 79590890 79590890 + Silent SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_016010 exon3 c.A186G p.P62P TATTCCAACAGTA . 146.0 61.0 99.0 0.0 . . ZCRB1 85437 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 42711634 42711634 + Silent SNP A A G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ZCRB1 NM_033114 exon4 c.T180C p.D60D GTCTTTATCCAAA . 98.0 62.0 133.0 0.0 . 91 ZKSCAN7 55888 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 44612664 44612665 + Frame_Shift_Ins INS - - A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . . NM_018651 exon6 c.2062_2063insA p.E688fs ACTGGGGAAAAAC . 56.0 21.0 65.0 0.0 . . ZNF185 7739 hgsc.bcm.edu;mdanderson.org 37 X 152110314 152110314 + Missense_Mutation SNP C C A novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ZNF185 NM_001178115 exon1 c.C62A p.A21D TGCCGGCCGCCAG . 108.0 46.0 91.0 0.0 . 133 ZNF391 346157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27368962 27368962 + Missense_Mutation SNP C C G novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ZNF391 NM_001076781 exon3 c.C813G p.H271Q AACACACACTGGG . 118.0 38.0 86.0 0.0 . 69 ZNF665 79788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 53668959 53668959 + Missense_Mutation SNP A A T novel TCGA-RC-A6M4-01A-11D-A32G-10 TCGA-RC-A6M4-10A-01D-A32G-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 559b7362-9b75-4be3-b8bc-5f3e28b71cd8 eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2 . ZNF665 NM_024733 exon4 c.T784A p.Y262N ACTTGTAAGGTTT . 85.0 27.0 67.0 0.0 . 70