Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	18888005	18888005	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADAMTSL1	NM_001040272	exon24	c.4426delG	p.G1476fs	GAGGCAGGGGTGC	.	96.0	16.0	109.0	0.0	.	230
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100232814	100232814	+	Splice_Site	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADH1B	NM_000668	exon8	c.829-1G>A	.	AGCCATCTGGAAT	.	59.0	7.0	65.0	0.0	.	136
ADNP2	22850	broad.mit.edu;bcgsc.ca	37	18	77896513	77896513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ADNP2	NM_014913	exon4	c.A3217G	p.I1073V	AAGGAAATAGAAC	.	62.0	4.0	65.0	0.0	.	140
AFTPH	54812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	64779926	64779926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	AFTPH	NM_017657	exon2	c.T1318G	p.S440A	TTTGGCTCTGCCA	.	67.0	5.0	69.0	0.0	.	70
ALS2CR11	151254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	202436741	202436741	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ALS2CR11	NM_001168217	exon8	c.A756G	p.L252L	AGGTTTTAACTGA	.	54.0	14.0	36.0	0.0	.	155
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114275909	114275909	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANK2	NM_001148	exon38	c.A6135G	p.T2045T	GAAAACAGAGAAT	.	151.0	40.0	154.0	0.0	.	583
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	94022288	94022288	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ANKRD32	NM_032290	exon16	c.A1986G	p.S662S	TTCTTCACAGGAA	.	67.0	14.0	34.0	0.0	.	92
ASPRV1	151516	hgsc.bcm.edu;broad.mit.edu	37	2	70188307	70188356	+	Frame_Shift_Del	DEL	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	AGGCCTTCAGGAGGGCCTCTTTCACAGTCCCATAGTCTCCCTGGTCCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ASPRV1	NM_152792	exon1	c.465_514del	p.155_172del	CCCCAAAGGCCTT	.	70.0	7.0	65.0	0.0	.	69
ATG4C	84938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63294791	63294791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ATG4C	NM_178221	exon7	c.G877T	p.V293F	ATTCTAGTTCCTG	.	116.0	27.0	107.0	0.0	.	91
C3orf27	23434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128292489	128292489	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	C3orf27	NM_007354	exon3	c.C84T	p.R28R	CTGGAGGCGGGAG	.	115.0	24.0	126.0	0.0	.	90
CCDC125	202243	hgsc.bcm.edu;bcgsc.ca	37	5	68595919	68595919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCDC125	NM_176816	exon7	c.C736G	p.L246V	TATCAAGCATGGC	.	110.0	6.0	71.0	0.0	.	90
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550515	167550515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CCR6	NM_004367	exon3	c.G797A	p.C266Y	TGGCTTGTCAGAT	.	77.0	16.0	58.0	0.0	.	227
CD200R1	131450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112648003	112648003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD200R1	NM_138939	exon4	c.C554T	p.S185L	TCTGGTGATGTGA	.	80.0	11.0	72.0	0.0	.	93
CD69	969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9906144	9906144	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CD69	NM_001781	exon5	c.A533C	p.N178T	TCTGTGTTTTTCA	.	123.0	15.0	97.0	0.0	.	90
CHST1	8534	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45671573	45671573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CHST1	NM_003654	exon4	c.C901T	p.R301C	CGTAGCGCACCAA	.	49.0	13.0	61.0	1.0	.	95
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	7295867	7295867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CLSTN3	NM_014718	exon12	c.A1807G	p.T603A	TTTGCCACGCCCG	.	30.0	12.0	36.0	0.0	.	153
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	41422971	41422971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTN1	NM_001843	exon23	c.G2930A	p.R977H	AGGTTCGCGCGCA	.	114.0	33.0	95.0	0.0	.	1149
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7851880	7851898	+	Frame_Shift_Del	DEL	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GGGGGGCTCTGCCTGCTGA	GGGGGGCTCTGCCTGCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CNTROB	NM_001037144	exon17	c.2456_2474del	p.819_825del	GGGGCTGGGGGGC	.	91.0	20.0	150.0	0.0	.	153
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137713941	137713941	+	Splice_Site	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	COL5A1	NM_000093	exon59	c.4555-2A>T	.	CTTTTCAGGGTAT	.	28.0	9.0	25.0	0.0	.	524
CPA6	57094	hgsc.bcm.edu;bcgsc.ca	37	8	68658304	68658304	+	Missense_Mutation	SNP	A	A	G	rs147067921	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CPA6	NM_020361	exon1	c.T61C	p.F21L	TCAAAAAGAGCCA	.	225.0	13.0	126.0	0.0	A|1.000;T|0.000	92
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	159.0	60.0	129.0	0.0	.	24361
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10785358	10785358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CTR9	NM_014633	exon9	c.G1126A	p.E376K	AATTACGAAACTA	.	64.0	8.0	55.0	0.0	.	92
CYB5D2	124936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4058038	4058038	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	CYB5D2	NM_144611	exon3	c.G462A	p.A154A	AGCTGCGATCACC	.	110.0	43.0	148.0	0.0	.	155
DCAF12	25853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34089528	34089528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DCAF12	NM_015397	exon8	c.T1085C	p.L362P	AACAGCAGGGAGC	.	52.0	23.0	45.0	0.0	.	90
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32234735	32234735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DEPDC5	NM_001242896	exon27	c.C2419T	p.L807F	CAACGTCTCATGC	.	58.0	20.0	87.0	0.0	.	519
DHX15	1665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24531241	24531241	+	Silent	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DHX15	NM_001358	exon13	c.A2253T	p.T751T	GATATCTGTACAT	.	120.0	10.0	94.0	0.0	.	91
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38159367	38159367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	DLEC1	NM_007337	exon33	c.G4556A	p.R1519Q	ACTTCCGGCTTAT	.	80.0	19.0	84.0	0.0	.	161
EFCAB13	124989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45452306	45452306	+	Missense_Mutation	SNP	C	C	T	rs144496511		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_152347	exon12	c.C1346T	p.T449M	CGTCTACGGAAAA	.	184.0	8.0	149.0	0.0	C|0.999;T|0.001	.
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38409153	38409153	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	EGFLAM	NM_001205301	exon10	c.C1296T	p.H432H	CGAACACGGGAGG	.	67.0	14.0	66.0	0.0	.	187
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15255230	15255230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAM171A1	NM_001010924	exon8	c.C2357T	p.T786M	AGCTGCGTGTAGG	.	101.0	11.0	136.0	0.0	.	138
FAT4	79633	hgsc.bcm.edu;broad.mit.edu	37	4	126373179	126373179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon9	c.T11008C	p.S3670P	CTGAATTCCCAGC	.	51.0	5.0	43.0	0.0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126241701	126241701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FAT4	NM_024582	exon1	c.G4135T	p.D1379Y	AAACTGGACTTTG	.	93.0	21.0	97.0	0.0	.	108
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157516904	157516904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL5	NM_031281	exon3	c.G136A	p.G46R	GAAATCCCTTGCA	.	87.0	5.0	51.0	0.0	.	156
FCRL6	343413	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159778188	159778188	+	Silent	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FCRL6	NM_001004310	exon3	c.A273C	p.P91P	TATTCCACAGACA	.	312.0	139.0	300.0	2.0	.	93
FLG	2312	hgsc.bcm.edu;bcgsc.ca	37	1	152279556	152279556	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FLG	NM_002016	exon3	c.C7806A	p.G2602G	TCTGGAGCCATCT	.	257.0	61.0	202.0	0.0	.	106
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169535273	169535273	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FOXI1	NM_012188	exon2	c.G795A	p.E265E	CCCAGAGAAGCGG	.	161.0	19.0	110.0	0.0	.	229
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79158773	79158773	+	Splice_Site	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	FRAS1	NM_001166133	exon3	c.216+2T>C	.	AGAAGGTACGGTA	.	42.0	7.0	52.0	0.0	.	68
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182071	120182071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GLUD2	NM_012084	exon1	c.C533G	p.P178R	ATGTGCCGTTTGG	.	46.0	27.0	34.0	0.0	.	131
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64055851	64055851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR137	NM_001170726	exon7	c.G997A	p.V333I	TACCTGGTATTTG	.	31.0	7.0	50.0	0.0	.	68
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89979611	89979611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	GPR98	NM_032119	exon28	c.C5873T	p.S1958F	GTGGTTCTTTGGG	.	110.0	39.0	103.0	0.0	.	103
IFNA10	3446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	21206860	21206860	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	IFNA10	NM_002171	exon1	c.C237T	p.V79V	ATGGAGGACAGAG	.	154.0	14.0	151.0	0.0	.	90
KHDC1L	100129128	broad.mit.edu;bcgsc.ca	37	6	73935081	73935081	+	Silent	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C51A	p.P17P	GTTTTCGGGCAGG	.	86.0	27.0	81.0	0.0	.	1
KHDC1L	100129128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935082	73935082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KHDC1L	NM_001126063	exon1	c.C50A	p.P17H	TTTTCGGGCAGGG	.	86.0	27.0	82.0	0.0	.	1
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	138619874	138619874	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIAA1244	NM_020340	exon22	c.C3780T	p.F1260F	ACCTTTCGAGCGC	.	95.0	8.0	72.0	0.0	.	228
KIF11	3832	broad.mit.edu;bcgsc.ca	37	10	94376541	94376541	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	KIF11	NM_004523	exon9	c.G1080A	p.L360L	CATATTGAATAAG	.	60.0	5.0	49.0	0.0	.	227
LCE1E	353135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152760020	152760020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCE1E	NM_178353	exon2	c.A245G	p.H82R	ACAGGCACCACAG	.	176.0	82.0	142.0	1.0	.	90
LCMT2	9836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43621087	43621087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCMT2	NM_014793	exon1	c.G1601T	p.R534L	GAATGCCGGGCTT	.	36.0	8.0	22.0	0.0	.	90
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169689689	169689689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LCP2	NM_005565	exon13	c.A876C	p.E292D	ATGTCTTTCCGTG	.	152.0	52.0	119.0	0.0	.	23
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	44893693	44893693	+	Splice_Site	SNP	T	T	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LDOC1L	.	.	.	.	GGGCCCTGGAGGA	.	48.0	7.0	38.0	0.0	.	69
LHFPL5	222662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35773531	35773531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LHFPL5	NM_182548	exon1	c.G84A	p.M28I	CGTGATGTGGGGT	.	136.0	43.0	95.0	0.0	.	91
LRSAM1	90678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	130242226	130242226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	LRSAM1	NM_001005373	exon14	c.C1012T	p.R338W	TCCAGCCGGATCC	.	144.0	12.0	166.0	0.0	.	90
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	84118684	84118684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MBTPS1	NM_003791	exon10	c.G1190C	p.G397A	CGCACGCCAGCAC	.	123.0	11.0	200.0	0.0	.	92
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41075734	41075734	+	Silent	SNP	G	G	T	rs201514957		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MCHR1	NM_005297	exon1	c.G285T	p.S95S	CACTTCGGCAGGT	.	63.0	21.0	65.0	0.0	.	90
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190922105	190922105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MSTN	NM_005259	exon3	c.C1007G	p.A336G	GGGCCTGCTGAAC	.	79.0	18.0	55.0	0.0	.	650
MTMR9	66036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11167038	11167038	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MTMR9	NM_015458	exon6	c.A812T	p.Y271F	AAAGGTATCACAT	.	44.0	15.0	45.0	0.0	.	226
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	3239233	3239233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MXRA5	NM_015419	exon5	c.C4493A	p.T1498K	AGAATTGTGGATG	.	106.0	5.0	75.0	0.0	.	136
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52652277	52652277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYO5A	NM_000259	exon25	c.A3311G	p.H1104R	GGCACATGCTGCA	.	51.0	13.0	54.0	0.0	.	93
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3134722	3134722	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	MYOM1	NM_003803	exon16	c.G2310T	p.G770G	GTAGTACCCGACC	.	196.0	86.0	90.0	0.0	.	94
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134027961	134027961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPD3	NM_015261	exon31	c.C4036T	p.P1346S	ACATGGGCCTGTG	.	42.0	12.0	37.0	0.0	.	229
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97017638	97017638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NCAPH	NM_015341	exon7	c.A790G	p.T264A	CTGTCCACTCTCC	.	74.0	19.0	72.0	0.0	.	228
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	236193033	236193033	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NID1	NM_002508	exon7	c.C1555T	p.Q519X	CAGCCTGGCGAGT	.	61.0	26.0	75.0	0.0	.	154
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7063785	7063785	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NLRP14	NM_176822	exon4	c.A528G	p.P176P	ACAGCCACAGATC	.	100.0	24.0	125.0	0.0	.	295
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115349517	115349517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRAP	NM_001261463	exon41	c.G4996A	p.G1666S	TCCAGCCAACACC	.	64.0	7.0	44.0	0.0	.	522
NRP2	8828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	206581088	206581088	+	Silent	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NRP2	NM_201279	exon3	c.C423A	p.I141I	CGAGATCTTCAAG	.	54.0	16.0	66.0	0.0	.	93
NUBPL	80224	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32030678	32030678	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	NUBPL	NM_025152	exon1	c.T33C	p.G11G	TTTTGGTGGGGTG	.	31.0	6.0	41.0	0.0	.	226
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411561	51411561	+	Silent	SNP	G	G	A	rs5011060		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4A5	NM_001005272	exon1	c.C835T	p.L279L	GACTCAGCATGTG	.	81.0	15.0	88.0	0.0	.	92
OR4K17	390436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20585954	20585954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR4K17	NM_001004715	exon1	c.C389A	p.T130N	GCTTCACTCAGAT	.	92.0	18.0	85.0	0.0	.	71
OR8B4	283162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124294034	124294034	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	OR8B4	NM_001005196	exon1	c.T734A	p.I245N	ACAGCAATTATGT	.	55.0	13.0	68.0	1.0	.	69
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	746557	746557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PALM	NM_002579	exon9	c.A907G	p.M303V	ATCTTCATGGGTT	.	55.0	22.0	83.0	0.0	.	68
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138450819	138450819	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PCDH18	NM_019035	exon1	c.C2424G	p.I808M	TGATGAGATTGTC	.	71.0	17.0	74.0	0.0	.	185
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140737153	140737153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_018917	exon1	c.G2386T	p.D796Y	ACTCAGGATTTAC	.	167.0	58.0	136.0	0.0	.	.
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105183390	105183390	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PDCD11	NM_014976	exon19	c.A2738T	p.D913V	ACCAGGACTTGGT	.	63.0	8.0	63.0	1.0	.	275
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209218741	209218741	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PIKFYVE	NM_015040	exon40	c.A5964G	p.L1988L	CCCTCTATATATT	.	95.0	22.0	99.0	0.0	.	583
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42298317	42298317	+	Silent	SNP	G	G	A	rs189566576	by1000genomes	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001206670	exon4	c.C396T	p.N132N	TAGCACGTTCTAG	.	96.0	31.0	137.0	0.0	G|0.997;A|0.003	.
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204192627	204192627	+	Missense_Mutation	SNP	C	C	A	rs201146402	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PLEKHA6	NM_014935	exon22	c.G3118T	p.A1040S	TGTCGGCGCCCCG	.	161.0	15.0	157.0	0.0	.	654
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74973679	74973679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	POC5	NM_001099271	exon11	c.A1504C	p.I502L	TGCTAATTCTATT	.	104.0	29.0	64.0	0.0	.	45
POM121L2	94026	broad.mit.edu;bcgsc.ca	37	6	27278073	27278073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_033482	exon1	c.C1877A	p.T626N	AGGGTGGTGGACA	.	127.0	7.0	83.0	0.0	.	.
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81747020	81747020	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PPFIA2	NM_001220476	exon16	c.T1872A	p.D624E	ATCATCATCAATA	.	117.0	40.0	74.0	0.0	.	231
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106552731	106552731	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRDM1	NM_001198	exon5	c.C696T	p.S232S	ACCGAGCACTGAG	.	60.0	7.0	38.0	0.0	.	862
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	69020369	69020369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PREX2	NM_024870	exon24	c.C2741T	p.A914V	ATAGGGCCTGGCC	.	94.0	5.0	50.0	0.0	.	390
PRKDC	5591	broad.mit.edu;mdanderson.org	37	8	48794656	48794656	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PRKDC	.	.	.	.	GGCACTCACCTGA	.	56.0	10.0	35.0	0.0	.	1515
PTGER2	5732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52781678	52781678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTGER2	NM_000956	exon1	c.A412G	p.I138V	CTCTCGATCGGGC	.	56.0	14.0	72.0	0.0	.	658
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70949887	70949887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PTPRB	NM_001109754	exon19	c.T4756C	p.S1586P	CCGTGGAGTTCTG	.	76.0	6.0	81.0	0.0	.	226
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31438867	31438867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	PUM1	NM_014676	exon13	c.C2048T	p.A683V	AGGGTGGCGCCGA	.	135.0	15.0	124.0	0.0	.	92
RASSF10	644943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	13031864	13031864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_001080521	exon1	c.C741G	p.H247Q	GCTCCACGAGCTG	.	117.0	32.0	130.0	0.0	.	.
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65422089	65422089	+	Silent	SNP	G	G	T	rs150493312	alternate_allele	TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RELA	NM_021975	exon11	c.C1416A	p.S472S	AAACTCGGAGTTG	.	73.0	20.0	81.0	0.0	G|1.000;C|0.000	872
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111732714	111732714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	REV3L	NM_002912	exon3	c.A373G	p.I125V	GATAGATCTTCAT	.	234.0	56.0	131.0	0.0	.	294
RGPD4	285190	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108487761	108487761	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RGPD4	NM_182588	exon20	c.C3301G	p.R1101G	CTGATGCGAAGAG	.	28.0	5.0	14.0	0.0	.	2
RTKN2	219790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	63976948	63976948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RTKN2	NM_145307	exon9	c.949delC	p.L317fs	AATAGAGTTTACC	.	151.0	39.0	174.0	0.0	.	68
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33825515	33825515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	RYR3	NM_001243996	exon5	c.C358A	p.L120I	CAGTATCTAACAT	.	31.0	7.0	26.0	0.0	.	520
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	116728796	116728796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SIK3	NM_025164	exon20	c.C3067T	p.H1023Y	ACCCGTGGGGCGG	.	80.0	22.0	124.0	0.0	.	919
SLC22A15	55356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	116574033	116574033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC22A15	NM_018420	exon6	c.A775C	p.S259R	CGACTGAGTGAGG	.	100.0	21.0	112.0	0.0	.	67
SLC25A32	81034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104427069	104427069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLC25A32	NM_030780	exon1	c.G97A	p.G33S	AGACGCCGCCGCT	.	173.0	102.0	113.0	0.0	.	91
SLC51A	200931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195953959	195953959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_152672	exon3	c.G257A	p.R86Q	AGAGGCGGACTCT	.	51.0	5.0	43.0	0.0	.	.
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168123358	168123358	+	Silent	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SLIT3	NM_001271946	exon28	c.C3042T	p.N1014N	GGCATTGTTTTCG	.	74.0	32.0	68.0	0.0	.	95
SNX15	29907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64802558	64802558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	SNX15	NM_147777	exon5	c.G400T	p.V134L	TTGGAGGTGTCCA	.	109.0	9.0	140.0	0.0	.	227
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104157269	104157269	+	Splice_Site	SNP	G	G	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STAB2	NM_017564	exon68	c.7489-1G>C	.	CAAACAGTCGGAA	.	75.0	21.0	69.0	0.0	.	104
STXBP4	252983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	53158439	53158439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	STXBP4	NM_178509	exon16	c.A1384G	p.T462A	TCTCAGACTTCCC	.	131.0	47.0	105.0	0.0	.	91
TAMM41	132001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	11858718	11858718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_138807	exon5	c.T656C	p.I219T	TGTAGTATGCTGC	.	71.0	16.0	90.0	0.0	.	.
TCF23	150921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	27372096	27372096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TCF23	NM_175769	exon1	c.G95A	p.R32K	CTGACAGGAAGAG	.	109.0	6.0	98.0	0.0	.	90
TGOLN2	10618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85554158	85554158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TGOLN2	NM_001206841	exon2	c.G697A	p.D233N	GCCCGTCTATTGG	.	58.0	7.0	78.0	0.0	.	22
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	129569203	129569203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TMEM132D	NM_133448	exon6	c.G1488T	p.M496I	GCCTTTCATTTCT	.	95.0	19.0	109.0	0.0	.	106
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G824A	p.C275Y	CAGGCACAAACAC	.	52.0	15.0	84.0	0.0	.	70225
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234875362	234875362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TRPM8	NM_024080	exon15	c.C1988T	p.A663V	TGGAGGCCACAGA	.	73.0	23.0	47.0	0.0	.	94
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427137	179427137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	TTN	NM_001267550	exon326	c.G83722A	p.E27908K	ACTTTTCACTCCC	.	64.0	17.0	33.0	0.0	.	636
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70504723	70504723	+	Silent	SNP	C	C	T	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	UGT2A1	NM_001252274	exon3	c.G1239A	p.Q413Q	GGTCATCTGGTCA	.	196.0	22.0	160.0	0.0	.	92
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215808006	215808006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USH2A	NM_206933	exon70	c.G15092T	p.R5031L	TTGCTCCGCGATC	.	155.0	18.0	94.0	0.0	.	115
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58260713	58260713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	USP32	NM_032582	exon31	c.G3936T	p.L1312F	TGGTACCAAAAAA	.	161.0	84.0	111.0	0.0	.	704
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79820239	79820239	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	VPS13A	NM_001018038	exon4	c.A198G	p.K66K	TCTTAAACTTATA	.	235.0	56.0	213.0	0.0	.	161
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105932273	105932273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	WDR96	NM_025145	exon20	c.A2481C	p.E827D	GTCATTTTCTTCC	.	40.0	11.0	45.0	0.0	.	95
ZC2HC1A	51101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79598833	79598833	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_016010	exon4	c.T342C	p.S114S	ACCTTCTTATGAT	.	270.0	37.0	127.0	0.0	.	.
ZNF683	257101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26694244	26694244	+	Silent	SNP	A	A	G	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	NM_173574	exon3	c.T159C	p.H53H	TGGGCCATGAGCA	.	81.0	19.0	101.0	0.0	.	.
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23545412	23545412	+	Silent	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNF91	NM_003430	exon4	c.A369G	p.R123R	ACCTTTTCTTAAC	.	39.0	4.0	40.0	0.0	.	90
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47864862	47864862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	ZNFX1	NM_021035	exon14	c.A4699G	p.M1567V	CATCCATGTGGCA	.	72.0	35.0	85.0	0.0	.	24
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51233078	51233079	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RG-A7D4-01A-12D-A33Q-10	TCGA-RG-A7D4-10A-01D-A33Q-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d11dc224-6c52-4463-837f-20d99569f8b9	473df61f-c817-4a0c-a458-934d47687fa9	.	.	.	.	.	p.FL527LM	CTTGCAGGAAGAA	.	81.0	14.0	78.0	0.0	.	.