Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene TranscriptID Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq ACOX2 8309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 58517052 58517052 + Missense_Mutation SNP G G T rs75760511 TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ACOX2 NM_003500 exon7 c.C745A p.Q249K CTGTTTGATCAAA . 65.0 26.0 99.0 0.0 . 90 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 41554074 41554074 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ANK1 NM_001142446 exon27 c.G2890C p.G964R AACCACCCCGGGC . 69.0 23.0 90.0 0.0 . 716 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89350329 89350329 + Missense_Mutation SNP G G A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ANKRD11 NM_001256183 exon9 c.C2621T p.A874V AGCTTGGCCACAG . 81.0 21.0 74.0 0.0 . 139 ARID5B 84159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 63851284 63851284 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ARID5B NM_032199 exon10 c.T2062C p.S688P ATCATGTCCCCAC . 159.0 10.0 143.0 0.0 . 94 ATAD2 29028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 124340448 124340448 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ATAD2 NM_014109 exon25 c.G3850A p.D1284N TTTCATCAGAAAT . 67.0 17.0 53.0 0.0 . 92 ATP10B 23120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 160047535 160047535 + Missense_Mutation SNP C C A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ATP10B NM_025153 exon15 c.G2235T p.Q745H AGTCACCTGCTCA . 179.0 50.0 198.0 0.0 . 72 C16orf55 124045 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 89724816 89724816 + Silent SNP A A T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . C16orf55 NM_001271910 exon2 c.A198T p.A66A GCCGGCAGCTTCG . 39.0 24.0 72.0 0.0 . 90 CCDC41 51134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 94703723 94703723 + Missense_Mutation SNP T T A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . CCDC41 NM_016122 exon16 c.A1972T p.M658L GTTCCATGCTTGG . 147.0 57.0 170.0 0.0 . 90 CCDC53 51019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 102439885 102439885 + Missense_Mutation SNP G G C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_016053 exon3 c.C163G p.L55V GTGAAAGGTCTGC . 194.0 108.0 248.0 0.0 . . CDH4 1002 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60318687 60318687 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . CDH4 NM_001794 exon3 c.G238T p.G80W AAAGTTGGGGCAG . 109.0 29.0 147.0 1.0 . 282 CELSR2 1952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109794350 109794350 + Missense_Mutation SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . CELSR2 NM_001408 exon1 c.A1649G p.D550G GACATGACTTCCC . 68.0 26.0 147.0 0.0 . 526 COL3A1 1281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 189871670 189871670 + Missense_Mutation SNP C C A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . COL3A1 NM_000090 exon44 c.C3209A p.A1070D GCCCTGCTGGCCC . 186.0 98.0 187.0 0.0 . 581 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 3216738 3216738 + Silent SNP G G A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . CSMD1 NM_033225 exon21 c.C3240T p.A1080A CTTGGTGGCACCT . 156.0 41.0 118.0 0.0 . 86 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 41266113 41266113 + Missense_Mutation SNP C C G rs121913403 bycluster TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc CTNNB1,gallbladder,other,0 CTNNB1 NM_001098209 exon3 c.C110G p.S37C TCCATTCTGGTGC . 115.0 49.0 181.0 0.0 . 24361 DNM2 1785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10906053 10906053 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . DNM2 NM_001005361 exon9 c.G1134T p.E378D GATGGAGTTTGAC . 45.0 29.0 53.0 0.0 . 471 EMC7 56851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 34376643 34376643 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_020154 exon5 c.G621A p.L207L ATCAGGCAACTCA . 151.0 44.0 154.0 0.0 . . GAREML 150946 ucsc.edu;bcgsc.ca 37 2 26399314 26399314 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_001168241 exon2 c.G214T p.V72F CACTATGTCATCG . 40.0 4.0 64.0 0.0 . . HLA-DMB 3109 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 32906517 32906518 + Frame_Shift_Ins INS - - GCCCATT novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . HLA-DMB NM_002118 exon2 c.281_282insAATGGGC p.L94fs TTCTGAAGCCCAT . 148.0 45.0 150.0 0.0 . 90 HSD3B7 80270 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 30997473 30997473 + Frame_Shift_Del DEL A A - novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . HSD3B7 NM_025193 exon3 c.270delA p.V90fs GCTGGTAGACGTG . 162.0 43.0 216.0 0.0 . 90 IGSF10 285313 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151161484 151161484 + Missense_Mutation SNP G G A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . IGSF10 NM_178822 exon5 c.C5251T p.R1751C TGGTACGTCTCTC . 197.0 51.0 173.0 0.0 . 102 IL6 3569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 22767222 22767222 + Missense_Mutation SNP T T A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . IL6 NM_000600 exon2 c.T179A p.I60N GGTACATCCTCGA . 84.0 56.0 122.0 0.0 . 514 IQSEC2 23096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53277343 53277343 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . IQSEC2 NM_001111125 exon7 c.G2535A p.R845R CTGAACCCGGATA . 88.0 79.0 120.0 0.0 . 178 ISG20 3669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 89182609 89182609 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ISG20 NM_002201 exon2 c.C12T p.S4S TGGGAGCCGTGAG . 41.0 29.0 52.0 0.0 . 90 KANSL1 284058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 44109414 44109414 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_001193466 exon14 c.A3089G p.Q1030R CTTACCTGTTCAT . 88.0 30.0 64.0 0.0 . . LCE1F 353137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152748923 152748923 + Missense_Mutation SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . LCE1F NM_178354 exon1 c.A76G p.T26A TGCCCCACACCGA . 695.0 114.0 481.0 0.0 . 68 LTK 4058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41800366 41800366 + Missense_Mutation SNP A A G rs55683312 TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . LTK NM_002344 exon9 c.T1150C p.C384R AAGGGCAGTGACT . 70.0 22.0 73.0 0.0 A|0.999;G|0.001 1377 MLLT4 4301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 168314939 168314939 + Missense_Mutation SNP G G A rs149079362 byfrequency TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . MLLT4 NM_001040000 exon16 c.G2129A p.R710Q TTAGTCGGATCAC . 140.0 63.0 98.0 0.0 G|0.999;A|0.001 685 MROH8 140699 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 35769604 35769604 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . . . . . AGTTAGCAGTAAT . 88.0 25.0 120.0 0.0 . . MYO16 23026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 109707405 109707405 + Silent SNP G G A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . MYO16 NM_001198950 exon26 c.G3060A p.K1020K AAAAAAGAAAGGA . 570.0 349.0 336.0 0.0 . 142 NCOA3 8202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46265070 46265070 + Missense_Mutation SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . NCOA3 NM_001174088 exon12 c.A1970G p.K657R GTTGTAAAGAATC . 93.0 58.0 126.0 0.0 . 229 NTRK1 4914 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 156849827 156849827 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . NTRK1 NM_002529 exon16 c.C2083T p.P695S TGGATGCCGCCCG . 185.0 12.0 124.0 0.0 . 1393 NUP88 4927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 5290351 5290351 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . NUP88 NM_002532 exon15 c.C1996A p.Q666K TCAGCTGTAATTC . 46.0 43.0 74.0 0.0 . 204 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228494331 228494331 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . OBSCN NM_001271223 exon55 c.C14789T p.T4930I CCCTCACTGTCAC . 91.0 50.0 91.0 0.0 . 403 OR4M1 441670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 20249255 20249255 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . OR4M1 NM_001005500 exon1 c.C774A p.Y258X CATCTACATTTAT . 368.0 82.0 355.0 0.0 . 68 OSR1 130497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 19553505 19553505 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . OSR1 NM_145260 exon2 c.A62G p.Y21C AAGGAGTAGTTGG . 126.0 16.0 138.0 0.0 . 257 OTOP2 92736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72926856 72926856 + Missense_Mutation SNP G G C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . OTOP2 NM_178160 exon6 c.G1126C p.A376P GGTGCCGCCCTGG . 130.0 68.0 122.0 0.0 . 134 PCCA 5095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 100925472 100925472 + Silent SNP C C A rs138149179 alternate_allele TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PCCA NM_001178004 exon12 c.C937A p.R313R GAGACTCGAAGAG . 179.0 57.0 88.0 0.0 C|0.999;T|0.000 227 PCDHA1 56147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140167835 140167835 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PCDHA1 NM_031410 exon1 c.C1960G p.H654D AAGGATCACGGTG . 61.0 38.0 58.0 0.0 . 23 PCDHB16 57717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140562669 140562669 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PCDHB16 NM_020957 exon1 c.C535T p.R179W CATTTCCGGGTTC . 78.0 16.0 64.0 0.0 . 92 PDRG1 81572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 30538175 30538175 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PDRG1 NM_030815 exon2 c.A103G p.T35A TTTTAGTGTCCAG . 66.0 44.0 66.0 0.0 . 90 PHF2 5253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 96416768 96416768 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PHF2 NM_005392 exon7 c.C863G p.S288C CTGCCTCTAACCA . 59.0 40.0 80.0 0.0 . 91 PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 64401788 64401788 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PHF3 NM_015153 exon4 c.C2351G p.T784S CAGATACTTTGGA . 215.0 104.0 142.0 0.0 . 229 PIPOX 51268 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27380528 27380528 + Missense_Mutation SNP G G A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PIPOX NM_016518 exon4 c.G575A p.S192N CCAGGAGCTACCA . 216.0 103.0 185.0 1.0 . 90 PKD1L3 342372 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 71967898 71967898 + RNA SNP T T A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PKD1L3 . . . . GTGTCCTGCTGAT . 136.0 48.0 167.0 1.0 . 68 PLA2G4D 283748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42378519 42378519 + Silent SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PLA2G4D NM_178034 exon4 c.T279C p.Y93Y CTCATCATAGATG . 50.0 30.0 65.0 0.0 . 136 POC5 134359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 74998430 74998430 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . POC5 NM_001099271 exon5 c.G513A p.K171K CCGTACCTTAAGA . 92.0 27.0 69.0 0.0 . 45 PRAMEF4 400735 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 12942131 12942131 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PRAMEF4 NM_001009611 exon3 c.G419C p.C140S CTTGGACAGTCCT . 13.0 9.0 22.0 0.0 . 45 PRNP 5621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 4680289 4680289 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . PRNP NM_000311 exon2 c.C423T p.F141F ACATTTCGGCAGT . 92.0 23.0 115.0 0.0 . 514 PRRT4 401399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127999248 127999248 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_001174164 exon4 c.G712A p.E238K TAGTTTCACCTGG . 115.0 71.0 147.0 0.0 . . RASA3 22821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114751254 114751254 + Missense_Mutation SNP T T G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . RASA3 NM_007368 exon23 c.A2261C p.K754T ACAGATTTGCTCC . 149.0 89.0 117.0 0.0 . 658 SENP7 57337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 101136470 101136470 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SENP7 NM_020654 exon5 c.A449G p.E150G AGAGGTTCTAATT . 129.0 34.0 91.0 0.0 . 661 SERBP1 26135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67895954 67895954 + Silent SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SERBP1 NM_001018067 exon1 c.C30A p.G10G CACGCAGCCGAAG . 134.0 50.0 186.0 0.0 . 91 SFMBT2 57713 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 7205790 7205790 + Frame_Shift_Del DEL T T - novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SFMBT2 NM_001029880 exon21 c.2627delA p.K876fs CATAACTTGATGG . 68.0 37.0 94.0 0.0 . 141 SLC29A2 3177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66135014 66135014 + Silent SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SLC29A2 NM_001532 exon7 c.T654C p.F218F GCGGGCAAACTTC . 62.0 56.0 131.0 0.0 . 91 SLC30A1 7779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 211749002 211749002 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SLC30A1 NM_021194 exon2 c.C1252A p.Q418K CAGGCTGAATGGT . 125.0 120.0 107.0 1.0 . 93 SLC5A8 160728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 101561932 101561932 + Frame_Shift_Del DEL C C - novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SLC5A8 NM_145913 exon11 c.1262delG p.G421fs GGTCCACCAACCA . 207.0 59.0 235.0 0.0 . 90 SLCO1C1 53919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 20858984 20858984 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SLCO1C1 NM_017435 exon4 c.C373T p.L125F ACACTGCTCATTG . 89.0 19.0 57.0 0.0 . 97 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 20490566 20490566 + Frame_Shift_Del DEL A A - novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SLIT2 NM_004787 exon8 c.736delA p.N246fs GGCCATAATGTAG . 101.0 38.0 191.0 0.0 . 521 SMUG1 23583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 54576393 54576393 + Missense_Mutation SNP T T G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . SMUG1 NM_001243790 exon4 c.A300C p.E100D GCTTACTTCCCCA . 73.0 20.0 74.0 0.0 . 227 SOGA2 23255 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 8783884 8783884 + Silent SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . . Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . . NM_015210 exon6 c.C774T p.S258S ACCCAGCATTCCT . 64.0 22.0 110.0 0.0 . . STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104048376 104048376 + Missense_Mutation SNP T T C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . STAB2 NM_017564 exon13 c.T1451C p.V484A AGAAGGTAAAAAT . 140.0 41.0 158.0 0.0 . 104 STX2 2054 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 131285985 131285985 + Missense_Mutation SNP C C G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . STX2 NM_194356 exon7 c.G512C p.G171A GGCTTCCCGCTCT . 150.0 12.0 165.0 0.0 . 90 TAAR2 9287 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 132938951 132938951 + Missense_Mutation SNP A A C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . TAAR2 NM_001033080 exon2 c.T394G p.F132V GATGAAAAATGGA . 143.0 9.0 122.0 0.0 . 91 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 bycluster TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc TP53,head_neck,carcinoma,0 TP53 NM_000546 exon7 c.G743A p.R248Q GGCCTCCGGTTCA . 46.0 42.0 102.0 0.0 C|1.000;|0.000 70225 XIRP1 165904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39226567 39226567 + Missense_Mutation SNP G G T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . XIRP1 NM_194293 exon2 c.C4370A p.A1457D TCAGGGGCCCCTT . 54.0 23.0 83.0 0.0 . 158 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168104195 168104195 + Missense_Mutation SNP C C T novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . XIRP2 NM_152381 exon9 c.C6293T p.S2098L AAGAATCAGACAG . 212.0 60.0 221.0 0.0 . 104 ZBTB8OS 339487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 33087489 33087489 + Nonsense_Mutation SNP C C A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ZBTB8OS NM_178547 exon7 c.G514T p.E172X AAACTTCCGGGTT . 47.0 24.0 74.0 0.0 . 90 ZNF518B 85460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 10445315 10445315 + Missense_Mutation SNP G G C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ZNF518B NM_053042 exon3 c.C2638G p.L880V TGGAAAGCAGTCT . 39.0 5.0 82.0 0.0 . 72 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57829551 57829551 + Missense_Mutation SNP A A G novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ZNF831 NM_178457 exon5 c.A4787G p.Y1596C GCCAGTATGGGTG . 194.0 62.0 233.0 0.0 . 126 ZSCAN21 7589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 99662023 99662023 + Missense_Mutation SNP G G C novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ZSCAN21 NM_145914 exon4 c.G1205C p.G402A ATGCGGGCCTCAG . 62.0 19.0 60.0 0.0 . 93 ZSWIM1 90204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 44511960 44511960 + Missense_Mutation SNP C C A novel TCGA-UB-A7MC-01A-11D-A33Q-10 TCGA-UB-A7MC-10A-01D-A33Q-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 7021c007-2dca-4528-a727-24cc186289b5 0856f8bb-d4eb-4f86-9bae-e349845c39dc . ZSWIM1 NM_080603 exon2 c.C729A p.H243Q GGCTCACCGCTGG . 41.0 10.0 70.0 0.0 . 91