Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
MEGF6	1953	hgsc.bcm.edu	hg19	1	3407516	3407516	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MEGF6	NM_001409	exon36	c.C4524T	p.P1508P	CCGGAGGGGCCCA	.	52.0	20.0	61.0	0.0	.	91	.	.	Atlas-SNP
MASP2	10747	hgsc.bcm.edu	hg19	1	11102990	11102990	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MASP2	NM_006610	exon6	c.C831G	p.T277T	GACAAAGGTGATG	.	88.0	24.0	98.0	0.0	.	71	.	.	Atlas-SNP
PADI2	11240	hgsc.bcm.edu	hg19	1	17395676	17395676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PADI2	NM_007365	exon16	c.C1861T	p.L621F	CCAGGAGGCCACG	.	135.0	48.0	88.0	0.0	.	72	.	.	Atlas-SNP
ELOVL1	64834	hgsc.bcm.edu	hg19	1	43830911	43830911	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ELOVL1	NM_001256399	exon3	c.C183T	p.F61F	AATCATGAAGCCA	.	198.0	65.0	206.0	0.0	.	18	.	.	Atlas-SNP
KDM4A	9682	hgsc.bcm.edu	hg19	1	44170005	44170005	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	KDM4A	NM_014663	exon22	c.T3159G	p.Y1053X	AGATTATATTGAG	.	96.0	26.0	80.0	0.0	.	74	.	.	Atlas-SNP
C8B	732	hgsc.bcm.edu	hg19	1	57395082	57395082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	C8B	NM_000066	exon12	c.T1771G	p.S591A	GCTAGGAGCAGTC	.	76.0	22.0	31.0	0.0	.	107	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70504820	70504820	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	LRRC7,colon,carcinoma,0,1	LRRC7	NM_020794	exon19	c.G3199C	p.A1067P	AACATCGCCAAGG	.	145.0	40.0	79.0	0.0	.	400	.	.	Atlas-SNP
PTGFR	5737	hgsc.bcm.edu	hg19	1	78958702	78958702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PTGFR	NM_000959	exon2	c.T274C	p.Y92H	TTTGTATATGCTT	.	101.0	38.0	75.0	0.0	.	121	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103444972	103444972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	COL11A1	NM_080629	exon32	c.G2612T	p.G871V	GGAAACCCAGGGA	.	220.0	62.0	109.0	0.0	.	972	.	.	Atlas-SNP
GABPB2	126626	hgsc.bcm.edu	hg19	1	151070417	151070417	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GABPB2	NM_144618	exon5	c.G561A	p.T187T	CTTCACGTCGGGT	.	194.0	48.0	155.0	0.0	.	41	.	.	Atlas-SNP
FLG2	388698	hgsc.bcm.edu	hg19	1	152326933	152326933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	FLG2	NM_001014342	exon3	c.G3329A	p.G1110D	GACTGACCTGAGC	.	197.0	44.0	55.0	0.0	.	431	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842253	154842253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	KCNN3	NM_001204087	exon1	c.C188A	p.P63H	TGCGGAGGCTGAG	.	109.0	15.0	70.0	0.0	.	141	.	.	Atlas-SNP
CD1B	910	hgsc.bcm.edu	hg19	1	158300831	158300831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CD1B	NM_001764	exon2	c.T83A	p.F28Y	ACATGAAAGGAGG	.	320.0	88.0	157.0	0.0	.	78	.	.	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	hg19	1	171033398	171033398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_001163629	exon22	c.C2503A	p.P835T	TTGAAGCCTCTTT	.	491.0	246.0	250.0	0.0	.	.	.	.	Atlas-SNP
MROH9	80133	hgsc.bcm.edu	hg19	1	171033399	171033399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_001163629	exon22	c.C2504A	p.P835H	TGAAGCCTCTTTA	.	488.0	243.0	249.0	0.0	.	.	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175360435	175360435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TNR	NM_003285	exon7	c.G1496A	p.S499N	GAGACGCTGGCCG	.	106.0	33.0	54.0	0.0	.	399	.	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	hg19	2	26477337	26477337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	HADHB	NM_000183	exon3	c.C104G	p.A35G	GAGCTGCCCCAGG	.	199.0	72.0	132.0	0.0	.	50	.	.	Atlas-SNP
LTBP1	4052	hgsc.bcm.edu	hg19	2	33359882	33359882	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LTBP1	NM_206943	exon5	c.C1056A	p.I352I	CCGCATCAAGGTG	.	246.0	70.0	136.0	0.0	.	317	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54858513	54858513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SPTBN1	NM_003128	exon16	c.A3329T	p.E1110V	AGAACGAGATCGA	.	189.0	77.0	162.0	0.0	.	378	.	.	Atlas-SNP
LCT	3938	hgsc.bcm.edu	hg19	2	136555611	136555611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LCT	NM_002299	exon13	c.T4964C	p.L1655P	TTGTTGAGGCCTG	.	42.0	14.0	38.0	0.0	.	309	.	.	Atlas-SNP
FMNL2	114793	hgsc.bcm.edu	hg19	2	153399308	153399308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	FMNL2	NM_052905	exon3	c.A257G	p.Y86C	AAGGCTATCTGGA	.	124.0	38.0	69.0	0.0	.	75	.	.	Atlas-SNP
CYTIP	9595	hgsc.bcm.edu	hg19	2	158272637	158272637	+	Missense_Mutation	SNP	G	G	C	rs374851359	alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	CYTIP,NS,carcinoma,0,1	CYTIP	NM_004288	exon8	c.C632G	p.P211R	AAACTGGGGCAAT	.	86.0	33.0	52.0	0.0	.	45	.	.	Atlas-SNP
STAT1	6772	hgsc.bcm.edu	hg19	2	191854348	191854348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	STAT1	NM_007315	exon12	c.T1090C	p.F364L	TATCAAATAAGAC	.	512.0	184.0	398.0	0.0	.	93	.	.	Atlas-SNP
AAMP	14	hgsc.bcm.edu	hg19	2	219134201	219134201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	AAMP	NM_001087	exon2	c.G178A	p.G60S	CGTTGCCCTCTTC	.	121.0	41.0	106.0	0.0	.	29	.	.	Atlas-SNP
ASIC4	55515	hgsc.bcm.edu	hg19	2	220396813	220396813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_182847	exon3	c.C1199T	p.P400L	TGTCCCCAGGCTT	.	97.0	37.0	114.0	0.0	.	.	.	.	Atlas-SNP
CXXC11	285093	hgsc.bcm.edu	hg19	2	242814897	242814897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_173821	exon2	c.T1190A	p.L397H	AGGGCCTCGTCCC	.	53.0	15.0	96.0	0.0	.	.	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	CTNNB1,NS,carcinoma,0,1	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	150.0	54.0	55.0	0.0	.	4904	.	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	hg19	3	45132884	45132884	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CDCP1	NM_022842	exon7	c.A1774T	p.K592X	GCTCCTTAAAGAA	.	75.0	19.0	87.0	0.0	.	61	.	.	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	hg19	3	49006081	49006081	+	Missense_Mutation	SNP	A	A	G	rs144088007		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ARIH2	NM_006321	exon7	c.A653G	p.Y218C	GGGACTATGTGGA	.	41.0	16.0	54.0	0.0	.	32	.	A|1.000;G|0.000	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58067391	58067391	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	FLNB	NM_001457	exon4	c.G675A	p.V225V	GGATGTGGACGAG	.	124.0	52.0	71.0	0.0	.	430	.	.	Atlas-SNP
DCUN1D1	54165	hgsc.bcm.edu	hg19	3	182665421	182665421	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	DCUN1D1	NM_020640	exon6	c.521-1G>T	.	CTAGATCTGAAAT	.	542.0	156.0	374.0	0.0	.	27	.	.	Atlas-SNP
ATP8A1	10396	hgsc.bcm.edu	hg19	4	42457611	42457611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ATP8A1	NM_006095	exon28	c.G2625T	p.W875C	GGCAAACCAGATC	.	245.0	79.0	174.0	0.0	.	206	.	.	Atlas-SNP
OCIAD1	54940	hgsc.bcm.edu	hg19	4	48834685	48834685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	OCIAD1	NM_001168254	exon2	c.C59T	p.P20L	AGGTTCCAAGACC	.	77.0	23.0	79.0	0.0	.	27	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62845399	62845399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LPHN3	NM_015236	exon15	c.G2720A	p.S907N	TCCAGAGTGACCG	.	115.0	41.0	61.0	0.0	.	800	.	.	Atlas-SNP
STAP1	26228	hgsc.bcm.edu	hg19	4	68442954	68442954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	STAP1	NM_012108	exon4	c.G340A	p.G114S	TGGAGAGGCTTCA	.	339.0	115.0	188.0	0.0	.	46	.	.	Atlas-SNP
PRSS12	8492	hgsc.bcm.edu	hg19	4	119204214	119204214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PRSS12	NM_003619	exon12	c.C2092A	p.L698M	GTACCAGAGTATG	.	71.0	22.0	38.0	0.0	.	71	.	.	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154525446	154525446	+	Silent	SNP	A	A	G	rs17030219	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	KIAA0922	NM_001131007	exon25	c.A3282G	p.S1094S	AACTTCAGAGAAC	.	368.0	104.0	173.0	0.0	.	214	.	A|0.987;C|0.013	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156135952	156135952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	NPY2R	NM_000910	exon2	c.C861A	p.F287L	TGCCTTCCAGCTT	.	132.0	37.0	49.0	0.0	.	87	.	.	Atlas-SNP
NPY2R	4887	hgsc.bcm.edu	hg19	4	156135953	156135953	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	NPY2R,NS,carcinoma,0,1	NPY2R	NM_000910	exon2	c.C862T	p.Q288X	GCCTTCCAGCTTG	.	132.0	37.0	49.0	0.0	.	87	.	.	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	hg19	5	82837017	82837017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	VCAN	NM_004385	exon8	c.C8195A	p.A2732E	CTATTGCAGACCA	.	145.0	35.0	30.0	0.0	.	498	.	.	Atlas-SNP
ADAMTS19	171019	hgsc.bcm.edu	hg19	5	128864307	128864307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	ADAMTS19,NS,carcinoma,0,1	ADAMTS19	NM_133638	exon6	c.T1247C	p.L416S	TACATTTAGAGAT	.	352.0	172.0	127.0	0.0	.	216	.	.	Atlas-SNP
PPP2CA	5515	hgsc.bcm.edu	hg19	5	133541801	133541801	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PPP2CA	NM_002715	exon2	c.G124C	p.E42Q	TGGATTCTTTTGT	.	179.0	38.0	90.0	0.0	.	29	.	.	Atlas-SNP
SLC36A3	285641	hgsc.bcm.edu	hg19	5	150678157	150678157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SLC36A3	NM_181774	exon2	c.G216T	p.L72F	TACCAACAAGCCG	.	80.0	37.0	62.0	0.0	.	54	.	.	Atlas-SNP
SOX30	11063	hgsc.bcm.edu	hg19	5	157078733	157078733	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SOX30	NM_178424	exon1	c.C354T	p.G118G	GGTGGCGCCGTCT	.	97.0	12.0	62.0	0.0	.	67	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176721059	176721059	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	NSD1	NM_022455	exon23	c.A6690G	p.P2230P	GCCTCCAGGGCCA	.	77.0	25.0	44.0	0.0	.	416	.	.	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327286	16327286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ATXN1	NM_001128164	exon7	c.G1256C	p.G419A	GGCTTCCCTAAAT	.	53.0	16.0	49.0	0.0	.	117	.	.	Atlas-SNP
GNL1	2794	hgsc.bcm.edu	hg19	6	30520392	30520392	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GNL1	NM_005275	exon8	c.G951A	p.G317G	GGTGGCCCCAGCC	.	59.0	15.0	54.0	0.0	.	47	.	.	Atlas-SNP
ZBTB22	9278	hgsc.bcm.edu	hg19	6	33283384	33283384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ZBTB22	NM_001145338	exon2	c.C1310T	p.S437F	TGTGAGGATGAGG	.	109.0	38.0	124.0	0.0	.	48	.	.	Atlas-SNP
PI16	221476	hgsc.bcm.edu	hg19	6	36926970	36926970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PI16	NM_001199159	exon3	c.G221A	p.C74Y	GGCAGTGCGTGTG	.	129.0	44.0	135.0	0.0	.	50	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	hg19	6	42227293	42227293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TRERF1	NM_033502	exon9	c.A2053G	p.S685G	GCTGGCTCTGGTA	.	170.0	54.0	166.0	0.0	.	124	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155450964	155450964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TIAM2	NM_012454	exon3	c.A607C	p.T203P	TCACCTACCTTAG	.	66.0	15.0	63.0	0.0	.	161	.	.	Atlas-SNP
CCZ1	51622	hgsc.bcm.edu	hg19	7	5965278	5965278	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CCZ1	NM_015622	exon15	c.T1409G	p.L470R	AGAAACTTTGTGC	.	852.0	247.0	851.0	2.0	.	21	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48411826	48411826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ABCA13	NM_152701	exon33	c.T10865C	p.M3622T	AGAACATGGCTGT	.	122.0	31.0	45.0	0.0	.	1192	.	.	Atlas-SNP
RNF148	378925	hgsc.bcm.edu	hg19	7	122342165	122342165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	RNF148	NM_198085	exon1	c.A640G	p.T214A	TAGGTGTAAGTCT	.	51.0	16.0	22.0	0.0	.	71	.	.	Atlas-SNP
HIPK2	28996	hgsc.bcm.edu	hg19	7	139316421	139316421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	HIPK2	NM_022740	exon3	c.G1154A	p.W385X	AGGGACCACATGT	.	93.0	30.0	47.0	0.0	.	192	.	.	Atlas-SNP
SLC4A2	6522	hgsc.bcm.edu	hg19	7	150765081	150765081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SLC4A2	NM_003040	exon8	c.C1087A	p.P363T	GGGAAGCCCCACG	.	72.0	22.0	84.0	0.0	.	98	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2976077	2976077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CSMD1	NM_033225	exon42	c.C6274T	p.P2092S	GAAATGGGGGTGG	.	79.0	39.0	128.0	0.0	.	1469	.	.	Atlas-SNP
GFRA2	2675	hgsc.bcm.edu	hg19	8	21608422	21608422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GFRA2	NM_001495	exon4	c.A472G	p.S158G	GGTTGCTCTTGGC	.	81.0	50.0	111.0	0.0	.	23	.	.	Atlas-SNP
DUSP26	78986	hgsc.bcm.edu	hg19	8	33449660	33449660	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	DUSP26	NM_024025	exon4	c.G507A	p.L169L	GTGGTACAGCATG	.	75.0	32.0	120.0	0.0	.	42	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69031729	69031729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PREX2	NM_024870	exon28	c.C3484A	p.L1162I	AGTTGCCTTGAGC	.	212.0	84.0	40.0	0.0	.	614	.	.	Atlas-SNP
POP1	10940	hgsc.bcm.edu	hg19	8	99170330	99170330	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	POP1	NM_001145860	exon16	c.A2906T	p.Q969L	TGACTCAGGGAGA	.	115.0	43.0	37.0	0.0	.	85	.	.	Atlas-SNP
NIPAL2	79815	hgsc.bcm.edu	hg19	8	99224705	99224705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	NIPAL2	NM_024759	exon6	c.A583G	p.I195V	GGAGAATGCAGAA	.	185.0	23.0	21.0	0.0	.	23	.	.	Atlas-SNP
ODF1	4956	hgsc.bcm.edu	hg19	8	103572893	103572893	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	ODF1,NS,carcinoma,0,1	ODF1	NM_024410	exon2	c.G534A	p.P178P	CTTGCCGCCCTGT	.	304.0	33.0	78.0	0.0	.	55	.	.	Atlas-SNP
AARD	441376	hgsc.bcm.edu	hg19	8	117950586	117950586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_001025357	exon1	c.A104G	p.D35G	CGTGCGACTTCTT	.	586.0	219.0	130.0	0.0	.	.	.	.	Atlas-SNP
PIGO	84720	hgsc.bcm.edu	hg19	9	35092036	35092036	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PIGO	NM_032634	exon7	c.C1848T	p.H616H	ACCATTGTGCCGT	.	109.0	35.0	91.0	0.0	.	86	.	.	Atlas-SNP
ALDH1B1	219	hgsc.bcm.edu	hg19	9	38397141	38397141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ALDH1B1	NM_000692	exon2	c.G1396C	p.G466R	CAGGCCGGGACCG	.	107.0	34.0	83.0	0.0	.	50	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96018645	96018645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	WNK2	NM_006648	exon9	c.C2099A	p.P700Q	ACTTCCCGGATCC	.	74.0	20.0	79.0	0.0	.	277	.	.	Atlas-SNP
ERP44	23071	hgsc.bcm.edu	hg19	9	102782996	102782996	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ERP44	NM_015051	exon6	c.C489A	p.I163I	TCCAATGATATTT	.	78.0	19.0	35.0	0.0	.	38	.	.	Atlas-SNP
ENG	2022	hgsc.bcm.edu	hg19	9	130588910	130588910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ENG	NM_001114753	exon4	c.C402A	p.N134K	TGTGGTGTTGACC	.	87.0	5.0	104.0	0.0	.	44	.	.	Atlas-SNP
NUP214	8021	hgsc.bcm.edu	hg19	9	134073496	134073496	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	NUP214	NM_005085	exon29	c.A4615T	p.K1539X	GTTAAAAAAGAAC	.	113.0	42.0	101.0	0.0	.	166	.	.	Atlas-SNP
PNPLA7	375775	hgsc.bcm.edu	hg19	9	140361782	140361782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PNPLA7	NM_001098537	exon26	c.A3026G	p.K1009R	CACTGCTTGGCCC	.	80.0	30.0	68.0	0.0	.	124	.	.	Atlas-SNP
PITX3	5309	hgsc.bcm.edu	hg19	10	103991819	103991819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PITX3	NM_005029	exon2	c.A19C	p.S7R	CCTCGCTGAGCAG	.	76.0	22.0	77.0	0.0	.	9	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127806605	127806605	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ADAM12	NM_003474	exon7	c.612+2T>C	.	CCCCTTACCCTTC	.	62.0	18.0	31.0	0.0	.	388	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1093305	1093305	+	Silent	SNP	C	C	G	rs62637245	alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MUC2	NM_002457	exon30	c.C5124G	p.T1708T	GGTGACCCCAACC	.	19.0	7.0	20.0	0.0	.	614	.	.	Atlas-SNP
OR51A7	119687	hgsc.bcm.edu	hg19	11	4928615	4928615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	OR51A7	NM_001004749	exon1	c.A16G	p.N6D	CTCAATAACTCCG	.	61.0	19.0	22.0	0.0	.	86	.	.	Atlas-SNP
MED17	9440	hgsc.bcm.edu	hg19	11	93526996	93526996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MED17	NM_004268	exon4	c.T740G	p.I247S	TCCAAATTCCTAG	.	132.0	43.0	96.0	0.0	.	37	.	.	Atlas-SNP
PGR	5241	hgsc.bcm.edu	hg19	11	100933279	100933279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PGR	NM_000926	exon4	c.A2111G	p.D704G	GTGTTGTCATGTC	.	168.0	50.0	72.0	0.0	.	115	.	.	Atlas-SNP
LMBR1L	55716	hgsc.bcm.edu	hg19	12	49496110	49496110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LMBR1L	NM_018113	exon10	c.G819C	p.Q273H	CAGGACCTGTCTG	.	143.0	42.0	95.0	0.0	.	61	.	.	Atlas-SNP
FAM186A	121006	hgsc.bcm.edu	hg19	12	50749666	50749666	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	FAM186A	NM_001145475	exon4	c.C949G	p.Q317E	TCTGCTGAAGCAT	.	54.0	13.0	56.0	0.0	.	181	.	.	Atlas-SNP
CCDC59	29080	hgsc.bcm.edu	hg19	12	82750988	82750988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CCDC59	NM_014167	exon2	c.G215A	p.R72Q	TCCTTCCGTAGCA	.	91.0	35.0	82.0	0.0	.	17	.	.	Atlas-SNP
GAS2L3	283431	hgsc.bcm.edu	hg19	12	101017580	101017580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GAS2L3	NM_174942	exon10	c.C997T	p.P333S	TCAAAACCCAGCG	.	140.0	38.0	69.0	0.0	.	76	.	.	Atlas-SNP
UBE3B	89910	hgsc.bcm.edu	hg19	12	109959357	109959357	+	Splice_Site	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	UBE3B	NM_183415	exon21	c.2364+1G>T	.	TATGAGGTAGGAA	.	84.0	4.0	77.0	0.0	.	116	.	.	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	hg19	13	42179341	42179341	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	.	NM_015058	exon40	c.A4949T	p.Q1650L	TGCACCTGTCGCC	.	68.0	29.0	29.0	0.0	.	.	.	.	Atlas-SNP
LMO7	4008	hgsc.bcm.edu	hg19	13	76381866	76381866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LMO7	NM_015842	exon7	c.G748A	p.D250N	TTTGAAGACTTTA	.	84.0	4.0	60.0	0.0	.	334	.	.	Atlas-SNP
POTEG	404785	hgsc.bcm.edu	hg19	14	19566058	19566058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	POTEG,NS,malignant_melanoma,0,1	POTEG	NM_001005356	exon6	c.G1102A	p.V368I	CTAAAAGTCTCTT	.	570.0	78.0	246.0	0.0	.	118	.	.	Atlas-SNP
KLHDC1	122773	hgsc.bcm.edu	hg19	14	50192421	50192421	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	KLHDC1	NM_172193	exon6	c.G501A	p.W167X	ATTCTGGGGATGG	.	830.0	302.0	562.0	0.0	.	24	.	.	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	hg19	14	77493179	77493179	+	Silent	SNP	C	C	A	rs370738204	alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	IRF2BPL	NM_024496	exon1	c.G957T	p.S319S	TGCCACCGACGAA	.	64.0	35.0	157.0	0.0	.	40	.	.	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	hg19	15	23890281	23890281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	MAGEL2_ENST00000532292,right_upper_lobe,carcinoma,0,1	MAGEL2	NM_019066	exon1	c.A2609G	p.E870G	GAGGCCTCTTGAG	.	139.0	47.0	100.0	0.0	.	108	.	.	Atlas-SNP
HERC2	8924	hgsc.bcm.edu	hg19	15	28419679	28419679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	HERC2	NM_004667	exon65	c.G9919A	p.E3307K	GGCCTTCTAAGCC	.	499.0	138.0	495.0	0.0	.	501	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93496619	93496619	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CHD2	NM_001271	exon14	c.G1535C	p.G512A	AAATGGGCCTAGG	.	131.0	43.0	95.0	0.0	.	280	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93567763	93567763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CHD2	NM_001271	exon39	c.A5315G	p.E1772G	TGGGGGAATATAA	.	165.0	8.0	135.0	0.0	.	280	.	.	Atlas-SNP
MRPL28	10573	hgsc.bcm.edu	hg19	16	419990	419990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MRPL28	NM_006428	exon2	c.C229T	p.R77W	ACCCCCGCTGGGA	.	45.0	9.0	80.0	0.0	.	15	.	.	Atlas-SNP
C16orf71	146562	hgsc.bcm.edu	hg19	16	4794959	4794959	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	C16orf71	NM_139170	exon6	c.G990T	p.R330R	TGCCCGGAAGGTG	.	122.0	42.0	114.0	0.0	.	46	.	.	Atlas-SNP
TGFB1I1	7041	hgsc.bcm.edu	hg19	16	31488866	31488866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TGFB1I1	NM_001042454	exon11	c.G1355A	p.C452Y	CCTACTGCCAGCC	.	91.0	30.0	111.0	0.0	.	60	.	.	Atlas-SNP
ZDHHC1	29800	hgsc.bcm.edu	hg19	16	67440191	67440191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ZDHHC1	NM_013304	exon3	c.C164T	p.A55V	AGCCAGGCCACAA	.	250.0	104.0	252.0	0.0	.	28	.	.	Atlas-SNP
EIF5A	1984	hgsc.bcm.edu	hg19	17	7212975	7212975	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	EIF5A_ENST00000336452,NS,carcinoma,0,2	EIF5A	NM_001143760	exon2	c.C111G	p.F37L	GGACTTCGAGACA	.	66.0	14.0	65.0	0.0	.	28	.	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10535931	10535931	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MYH3	NM_002470	exon34	c.G4818A	p.V1606V	GCTCCGCACCTCG	.	58.0	20.0	69.0	0.0	.	227	.	.	Atlas-SNP
COG1	9382	hgsc.bcm.edu	hg19	17	71197399	71197399	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	COG1	NM_018714	exon7	c.A1433T	p.E478V	GGTCTGAGAGTCC	.	141.0	74.0	88.0	0.0	.	46	.	.	Atlas-SNP
RECQL5	9400	hgsc.bcm.edu	hg19	17	73625530	73625530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	RECQL5	NM_004259	exon16	c.G1973T	p.G658V	GGGAAACCAGCTC	.	152.0	42.0	113.0	0.0	.	77	.	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73831523	73831523	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	UNC13D	NM_199242	exon20	c.G1815T	p.L605L	CCGCGCCAGGGCC	.	117.0	52.0	97.0	0.0	.	68	.	.	Atlas-SNP
MFSD11	79157	hgsc.bcm.edu	hg19	17	74737143	74737143	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	MFSD11	NM_001242536	exon4	c.A257T	p.Y86F	TATTTTACAGGTA	.	82.0	18.0	76.0	0.0	.	47	.	.	Atlas-SNP
AATK	9625	hgsc.bcm.edu	hg19	17	79093268	79093268	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	AATK	NM_001080395	exon13	c.T3996G	p.A1332A	GAAGGGAGCGGGC	.	150.0	9.0	94.0	0.0	.	102	.	.	Atlas-SNP
TGIF1	7050	hgsc.bcm.edu	hg19	18	3447754	3447754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TGIF1	NM_173207	exon1	c.A17G	p.K6R	CGGGCAAAAGTTG	.	135.0	51.0	108.0	0.0	.	41	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21441694	21441694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	LAMA3	NM_001127717	exon35	c.G4507A	p.V1503M	AGTATGGTGGCGG	.	85.0	33.0	63.0	0.0	.	397	.	.	Atlas-SNP
PPAP2C	8612	hgsc.bcm.edu	hg19	19	287716	287716	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PPAP2C	NM_177543	exon3	c.C303T	p.D101D	GAGCCGGTCTGTG	.	82.0	22.0	113.0	0.0	.	38	.	.	Atlas-SNP
CAMSAP3	57662	hgsc.bcm.edu	hg19	19	7670161	7670161	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CAMSAP3	NM_020902	exon2	c.G198T	p.A66A	GTACGCGCAGGAG	.	138.0	50.0	173.0	0.0	.	131	.	.	Atlas-SNP
CACNA1A	773	hgsc.bcm.edu	hg19	19	13409467	13409467	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CACNA1A	NM_001127221	exon19	c.G2983C	p.E995Q	GGCCCTCGCCCTC	.	158.0	7.0	110.0	0.0	.	715	.	.	Atlas-SNP
NCAN	1463	hgsc.bcm.edu	hg19	19	19345806	19345806	+	Missense_Mutation	SNP	C	C	G	rs374113750	alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	NCAN	NM_004386	exon10	c.C3151G	p.L1051V	GACTGCCTCTGCA	.	53.0	16.0	59.0	0.0	.	277	.	.	Atlas-SNP
PLD3	23646	hgsc.bcm.edu	hg19	19	40875888	40875888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PLD3	NM_012268	exon7	c.C503G	p.P168R	GCAAGCCCAGCGG	.	95.0	34.0	97.0	0.0	.	71	.	.	Atlas-SNP
SIGLEC8	27181	hgsc.bcm.edu	hg19	19	51958750	51958750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SIGLEC8	NM_014442	exon4	c.G973T	p.E325X	TGAATTCCCCTTC	.	131.0	41.0	125.0	0.0	.	130	.	.	Atlas-SNP
ZNF468	90333	hgsc.bcm.edu	hg19	19	53344837	53344837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ZNF468	NM_001008801	exon4	c.A710C	p.H237P	TCTAAGTGAATTA	.	91.0	33.0	52.0	0.0	.	46	.	.	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	hg19	19	53645787	53645787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ZNF347	NM_001172675	exon5	c.G297A	p.M99I	ATCTTTCATTACA	.	64.0	14.0	42.0	0.0	.	87	.	.	Atlas-SNP
SIRPG	55423	hgsc.bcm.edu	hg19	20	1629706	1629706	+	Missense_Mutation	SNP	G	G	A	rs370649250		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SIRPG	NM_001039508	exon2	c.C422T	p.A141V	CCCAAAGCCATCT	.	112.0	40.0	51.0	0.0	.	61	.	.	Atlas-SNP
TSHZ2	128553	hgsc.bcm.edu	hg19	20	51870043	51870043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TSHZ2	NM_173485	exon2	c.G46A	p.A16T	GGCTACGCCCAGG	.	44.0	16.0	23.0	0.0	.	209	.	.	Atlas-SNP
ZNF512B	57473	hgsc.bcm.edu	hg19	20	62592718	62592718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	ZNF512B	NM_020713	exon16	c.A2371C	p.K791Q	ACTCCTTCGGACA	.	32.0	12.0	33.0	0.0	.	72	.	.	Atlas-SNP
CLDN14	23562	hgsc.bcm.edu	hg19	21	37833541	37833541	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	CLDN14	NM_144492	exon3	c.G453A	p.L151L	GGGCAGCAGCGGG	.	83.0	25.0	75.0	0.0	.	25	.	.	Atlas-SNP
TRAPPC10	7109	hgsc.bcm.edu	hg19	21	45451995	45451995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	TRAPPC10	NM_003274	exon2	c.A91C	p.T31P	TTATTTACCTCTG	.	104.0	29.0	66.0	0.0	.	109	.	.	Atlas-SNP
GNAZ	2781	hgsc.bcm.edu	hg19	22	23437953	23437953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GNAZ	NM_002073	exon2	c.G71C	p.R24P	ACCTGCGCTCAGA	.	96.0	30.0	146.0	0.0	.	45	.	.	Atlas-SNP
APOBEC3A	200315	hgsc.bcm.edu	hg19	22	39357505	39357505	+	Missense_Mutation	SNP	C	C	G	rs373904674	alternate_allele	TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	APOBEC3A	NM_145699	exon3	c.C288G	p.I96M	GTTCATCTCCTGG	.	106.0	30.0	111.0	0.0	.	20	.	.	Atlas-SNP
SCO2	9997	hgsc.bcm.edu	hg19	22	50962567	50962567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	SCO2	NM_001169111	exon2	c.G274A	p.E92K	GGGCTTCTGTTCG	.	58.0	20.0	57.0	0.0	.	38	.	.	Atlas-SNP
WWC3	55841	hgsc.bcm.edu	hg19	X	10096096	10096096	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	WWC3	NM_015691	exon16	c.G2175A	p.V725V	TTCCGTGCAGGTG	.	148.0	102.0	151.0	0.0	.	142	.	.	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	hg19	X	91133725	91133725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PCDH11X	NM_001168363	exon2	c.T2486C	p.F829S	TTATTTTCATCAC	.	295.0	14.0	206.0	0.0	.	714	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135427542	135427542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GPR112	NM_153834	exon6	c.C1677A	p.F559L	TTCTTTCTTAACA	.	68.0	52.0	35.0	0.0	.	459	.	.	Atlas-SNP
GABRE	2564	hgsc.bcm.edu	hg19	X	151123897	151123897	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GABRE	NM_004961	exon8	c.G1080A	p.V360V	GTTGAGCACAGCA	.	26.0	7.0	73.0	0.0	.	141	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88983540	88983540	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PTPN21	NM_007039	exon3	c.247delC	p.P83fs	.	.	92.0	43.0	76.0	0.0	.	113	.	.	Atlas-Indel,Pindel
GPR78	27201	hgsc.bcm.edu	hg19	4	8589017	8589017	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	GPR78	NM_080819	exon3	c.1018delA	p.T340fs	.	.	239.0	69.0	275.0	0.0	.	58	.	.	Atlas-Indel,Pindel
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140573599	140573599	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	PCDHB10	NM_018930	exon1	c.1473delG	p.L491fs	.	.	176.0	36.0	135.0	0.0	.	177	.	.	Atlas-Indel,Pindel
INA	9118	hgsc.bcm.edu	hg19	10	105048343	105048372	+	In_Frame_Del	DEL	ATATTAGAGGAGACAGTAATATCTACTAAG	ATATTAGAGGAGACAGTAATATCTACTAAG	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	ATATTAGAGGAGACAGTAATATCTACTAAG	ATATTAGAGGAGACAGTAATATCTACTAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	INA	NM_032727	exon3	c.1416_1445del	p.472_482del	.	.	183.0	34.0	149.0	0.0	.	34	.	.	Atlas-Indel,Pindel
WDR87	83889	hgsc.bcm.edu	hg19	19	38376879	38376883	+	Frame_Shift_Del	DEL	CTTCT	CTTCT	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	CTTCT	CTTCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	WDR87	NM_031951	exon6	c.7312_7316del	p.2438_2439del	.	.	156.0	47.0	74.0	0.0	.	191	.	.	Atlas-Indel,Pindel
FGB	2244	hgsc.bcm.edu	hg19	4	155487089	155487090	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	FGB	NM_005141	exon2	c.244_245insA	p.Q82fs	.	.	205.0	43.0	126.0	0.0	.	71	.	.	Pindel
DEF8	54849	hgsc.bcm.edu	hg19	16	90028418	90028495	+	Frame_Shift_Del	DEL	CTGGTTGGGTGTTGCCCGCTGCACGGGCCCTGGGTGGGTGTGAGAGGTGTCACCCGGCCGTGCCTGGCAGGTTTCTCG	CTGGTTGGGTGTTGCCCGCTGCACGGGCCCTGGGTGGGTGTGAGAGGTGTCACCCGGCCGTGCCTGGCAGGTTTCTCG	-	novel		TCGA-2Y-A9H1-01A-11D-A382-10	TCGA-2Y-A9H1-10A-01D-A385-10	CTGGTTGGGTGTTGCCCGCTGCACGGGCCCTGGGTGGGTGTGAGAGGTGTCACCCGGCCGTGCCTGGCAGGTTTCTCG	CTGGTTGGGTGTTGCCCGCTGCACGGGCCCTGGGTGGGTGTGAGAGGTGTCACCCGGCCGTGCCTGGCAGGTTTCTCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	97b30224-993b-47df-ba5f-824fc6e21907	9f0f7a73-8f8c-40b4-a130-b04813913909	.	DEF8	NM_207514	exon9	c.991_997del	p.331_333del	.	.	38.0	13.0	44.0	0.0	.	28	.	.	Pindel