Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PANK4	55229	hgsc.bcm.edu	hg19	1	2441560	2441560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PANK4	NM_018216	exon17	c.G1975A	p.D659N	TCACGTCGTTCAG	.	119.0	24.0	231.0	0.0	.	64	.	.	Atlas-SNP
ESPN	83715	hgsc.bcm.edu	hg19	1	6488312	6488312	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ESPN	NM_031475	exon2	c.C321T	p.V107V	CACAGTCTTGCAT	.	104.0	25.0	201.0	0.0	.	32	.	.	Atlas-SNP
DNAJC11	55735	hgsc.bcm.edu	hg19	1	6698364	6698364	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DNAJC11	NM_018198	exon12	c.G1314A	p.A438A	GGACTCCGCCTCT	.	24.0	4.0	58.0	0.0	.	93	.	.	Atlas-SNP
PTCHD2	57540	hgsc.bcm.edu	hg19	1	11561132	11561132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PTCHD2	NM_020780	exon2	c.T83A	p.F28Y	AAACCTTTTTAGG	.	67.0	9.0	158.0	0.0	.	193	.	.	Atlas-SNP
EPHA2	1969	hgsc.bcm.edu	hg19	1	16464921	16464921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EPHA2	NM_004431	exon4	c.C828A	p.C276X	AGGCGAGCAGGCT	.	53.0	9.0	84.0	0.0	.	102	.	.	Atlas-SNP
PRPF38A	84950	hgsc.bcm.edu	hg19	1	52871471	52871471	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PRPF38A	NM_032864	exon2	c.A250T	p.K84X	CCCGAGAAGGATA	.	106.0	8.0	132.0	0.0	.	36	.	.	Atlas-SNP
DNAJC6	9829	hgsc.bcm.edu	hg19	1	65830467	65830467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DNAJC6	NM_001256864	exon2	c.A343T	p.S115C	GTGACCAGGTACG	.	93.0	16.0	44.0	0.0	.	104	.	.	Atlas-SNP
RPE65	6121	hgsc.bcm.edu	hg19	1	68910485	68910485	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	RPE65	NM_000329	exon4	c.A327G	p.P109P	GGGATCTGGGAAA	.	110.0	21.0	137.0	0.0	.	87	.	.	Atlas-SNP
IFI44L	10964	hgsc.bcm.edu	hg19	1	79102796	79102796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	IFI44L	NM_006820	exon6	c.T956C	p.V319A	ACTGTGTGGCTTA	.	86.0	21.0	80.0	0.0	.	93	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103444973	103444973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	COL11A1	NM_080629	exon32	c.G2611T	p.G871W	GAAACCCAGGGAA	.	133.0	11.0	150.0	0.0	.	972	.	.	Atlas-SNP
HIPK1	204851	hgsc.bcm.edu	hg19	1	114483828	114483828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	HIPK1	NM_198268	exon2	c.T823G	p.L275V	CAGAACTTATATG	.	78.0	12.0	103.0	0.0	.	195	.	.	Atlas-SNP
PDZK1	5174	hgsc.bcm.edu	hg19	1	145748506	145748506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PDZK1	NM_002614	exon4	c.G379A	p.V127M	GGAGGTGTGCAAA	.	378.0	120.0	383.0	0.0	.	15	.	.	Atlas-SNP
FLG	2312	hgsc.bcm.edu	hg19	1	152282251	152282251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FLG	NM_002016	exon3	c.C5111A	p.S1704Y	ACTACAGATGAAT	.	81.0	12.0	88.0	0.0	.	900	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176992547	176992547	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ASTN1	NM_004319	exon7	c.C1431T	p.P477P	AGTTTCGGGGTCA	.	166.0	14.0	203.0	0.0	.	314	.	.	Atlas-SNP
RALGPS2	55103	hgsc.bcm.edu	hg19	1	178871314	178871314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	RALGPS2	NM_152663	exon18	c.C1598A	p.P533H	AACATCCTGATCT	.	85.0	9.0	44.0	0.0	.	69	.	.	Atlas-SNP
ABL2	27	hgsc.bcm.edu	hg19	1	179077338	179077338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ABL2	NM_007314	exon12	c.G3064A	p.G1022R	TCTTTCCTCCTTC	.	71.0	13.0	81.0	0.0	.	307	.	.	Atlas-SNP
CEP350	9857	hgsc.bcm.edu	hg19	1	179989802	179989802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CEP350	NM_014810	exon12	c.G2893A	p.A965T	ATGCAAGCCTGTT	.	199.0	61.0	191.0	0.0	.	418	.	.	Atlas-SNP
NVL	4931	hgsc.bcm.edu	hg19	1	224482050	224482050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NVL	NM_002533	exon12	c.C1244T	p.S415L	TCTAACGAGTCTG	.	71.0	5.0	85.0	0.0	.	74	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231885681	231885681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DISC1	NM_001164537	exon5	c.T1223C	p.L408S	AGACGTTACAACA	.	235.0	25.0	129.0	0.0	.	207	.	.	Atlas-SNP
ARID4B	51742	hgsc.bcm.edu	hg19	1	235345805	235345805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ARID4B	NM_016374	exon20	c.A2429G	p.D810G	GTTGTGTCCTTCT	.	79.0	5.0	104.0	0.0	.	142	.	.	Atlas-SNP
HEATR1	55127	hgsc.bcm.edu	hg19	1	236757400	236757400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	HEATR1	NM_018072	exon9	c.G1105A	p.G369R	CCATTCCTTCAGT	.	84.0	10.0	69.0	0.0	.	197	.	.	Atlas-SNP
ACTN2	88	hgsc.bcm.edu	hg19	1	236911058	236911058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ACTN2	NM_001103	exon13	c.A1498G	p.R500G	CAGAAGAGGAGAG	.	211.0	21.0	203.0	0.0	.	191	.	.	Atlas-SNP
AHCTF1	25909	hgsc.bcm.edu	hg19	1	247016531	247016531	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	AHCTF1	NM_015446	exon32	c.G4452A	p.E1484E	CCTGCGCTCAGAG	.	377.0	39.0	350.0	0.0	.	187	.	.	Atlas-SNP
OR2T6	254879	hgsc.bcm.edu	hg19	1	248550917	248550917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	OR2T6	NM_001005471	exon1	c.A8G	p.E3G	TGAATGAAAACAA	.	96.0	6.0	51.0	0.0	.	101	.	.	Atlas-SNP
ADCY3	109	hgsc.bcm.edu	hg19	2	25045489	25045489	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ADCY3	NM_004036	exon18	c.A2894T	p.N965I	TTGGGATTGTCCA	.	63.0	6.0	93.0	0.0	.	114	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28785968	28785968	+	Splice_Site	SNP	T	T	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PLB1	NM_153021	exon18	c.1206+2T>G	.	TCACGGTAAGTGA	.	102.0	13.0	95.0	0.0	.	255	.	.	Atlas-SNP
KCNG3	170850	hgsc.bcm.edu	hg19	2	42671524	42671524	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KCNG3	NM_133329	exon2	c.C861G	p.T287T	CCTCAAGGTGACT	.	132.0	19.0	112.0	0.0	.	19	.	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	hg19	2	61726983	61726983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	XPO1	NM_003400	exon7	c.A455T	p.D152V	ACAATATCACTGA	.	244.0	39.0	268.0	0.0	.	108	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84822866	84822866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DNAH6	NM_001370	exon18	c.A2821C	p.S941R	CCCAACAGTGTAG	.	68.0	10.0	102.0	0.0	.	194	.	.	Atlas-SNP
ACOXL	55289	hgsc.bcm.edu	hg19	2	111850452	111850452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ACOXL	NM_001142807	exon17	c.T1451C	p.L484S	GTCTGTTGTATGG	.	91.0	6.0	68.0	0.0	.	93	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167266356	167266356	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SCN7A	NM_002976	exon24	c.C3801A	p.A1267A	CATCATGGCTATT	.	178.0	22.0	118.0	0.0	.	410	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167266357	167266357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SCN7A	NM_002976	exon24	c.C3800T	p.A1267V	ATCATGGCTATTG	.	179.0	22.0	116.0	0.0	.	410	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179417552	179417552	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TTN	NM_001267550	exon335	c.G90075A	p.V30025V	AGCCTTCACTGGC	.	175.0	13.0	76.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179531559	179531559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TTN	NM_001267550	exon163	c.C35867T	p.S11956L	GTTGGTGATGGTG	.	86.0	15.0	74.0	0.0	.	18412	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211442191	211442191	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CPS1	NM_001122633	exon5	c.G446A	p.W149X	ACCACTGGCTGGC	.	106.0	9.0	89.0	0.0	.	485	.	.	Atlas-SNP
CPS1	1373	hgsc.bcm.edu	hg19	2	211527868	211527868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	CPS1_ENST00000430249,NS,carcinoma,0,4	CPS1	NM_001122633	exon34	c.C3967T	p.R1323W	TGGCCCCGGTTGA	.	121.0	20.0	114.0	0.0	.	485	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212522515	212522515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ERBB4	NM_001042599	exon16	c.C1910A	p.P637Q	GTCCATGGGTAGT	.	93.0	11.0	174.0	0.0	.	480	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222428899	222428899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EPHA4	NM_004438	exon3	c.C375A	p.Y125X	ATAGTAGTACAGG	.	99.0	17.0	98.0	0.0	.	263	.	.	Atlas-SNP
PAX3	5077	hgsc.bcm.edu	hg19	2	223066833	223066833	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PAX3	NM_181457	exon8	c.G1250C	p.G417A	AGACCCCCGGTGA	.	121.0	12.0	86.0	0.0	.	106	.	.	Atlas-SNP
CNTN6	27255	hgsc.bcm.edu	hg19	3	1444079	1444079	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CNTN6	NM_014461	exon22	c.A2895G	p.P965P	GGTTCCATTTGAA	.	241.0	30.0	209.0	0.0	.	245	.	.	Atlas-SNP
IFT57	55081	hgsc.bcm.edu	hg19	3	107881360	107881360	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	IFT57	NM_018010	exon11	c.C1254T	p.A418A	AACTGTGGCATGC	.	109.0	19.0	68.0	0.0	.	44	.	.	Atlas-SNP
RHO	6010	hgsc.bcm.edu	hg19	3	129251433	129251433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	RHO	NM_000539	exon4	c.C754A	p.R252S	GTCACCCGCATGG	.	58.0	10.0	95.0	0.0	.	57	.	.	Atlas-SNP
LRCH3	84859	hgsc.bcm.edu	hg19	3	197518150	197518150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LRCH3	NM_032773	exon1	c.A1C	p.M1L	TGGGAAATGGCGG	.	114.0	23.0	228.0	0.0	.	96	.	.	Atlas-SNP
OTOP1	133060	hgsc.bcm.edu	hg19	4	4199209	4199209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	OTOP1	NM_177998	exon5	c.C1352T	p.P451L	TTTTCAGGCTCTC	.	116.0	15.0	85.0	0.0	.	118	.	.	Atlas-SNP
BOD1L1	259282	hgsc.bcm.edu	hg19	4	13603610	13603610	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	BOD1L,NS,carcinoma,0,1	.	NM_148894	exon10	c.C4914A	p.I1638I	GGCTTCGATTTTA	.	67.0	4.0	34.0	0.0	.	.	.	.	Atlas-SNP
SEPSECS	51091	hgsc.bcm.edu	hg19	4	25160666	25160666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	SEPSECS_ENST00000382103,NS,carcinoma,0,1	SEPSECS	NM_016955	exon2	c.A178T	p.I60F	CCATGATTGCAAG	.	151.0	15.0	208.0	1.0	.	55	.	.	Atlas-SNP
KDR	3791	hgsc.bcm.edu	hg19	4	55974019	55974019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KDR	NM_002253	exon10	c.G1297T	p.D433Y	AGGAATCCACAGG	.	137.0	18.0	70.0	0.0	.	307	.	.	Atlas-SNP
PPAT	5471	hgsc.bcm.edu	hg19	4	57272854	57272854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PPAT	NM_002703	exon3	c.T209C	p.V70A	TGATTTACAAGAC	.	57.0	5.0	57.0	0.0	.	41	.	.	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86898763	86898763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ARHGAP24	NM_001025616	exon8	c.A847G	p.M283V	AACAAAATGAGTG	.	136.0	25.0	129.0	0.0	.	116	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	hg19	4	140811090	140811090	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	MAML3	NM_018717	exon2	c.G1500A	p.Q500Q	CTGCTGCTGCTGC	.	42.0	19.0	25.0	0.0	.	192	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	hg19	4	140811102	140811102	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	MAML3	NM_018717	exon2	c.G1488A	p.Q496Q	CTGCTGCTGCTGC	.	43.0	11.0	73.0	0.0	.	192	.	.	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	hg19	4	140811104	140811104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	MAML3	NM_018717	exon2	c.C1486A	p.Q496K	GCTGCTGCTGCTG	.	42.0	10.0	74.0	0.0	.	192	.	.	Atlas-SNP
TBC1D9	23158	hgsc.bcm.edu	hg19	4	141590109	141590109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TBC1D9	NM_015130	exon9	c.C1550T	p.P517L	CTCTCCGGGATGC	.	57.0	8.0	66.0	0.0	.	198	.	.	Atlas-SNP
LRBA	987	hgsc.bcm.edu	hg19	4	151656474	151656474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LRBA	NM_006726	exon36	c.A5690T	p.N1897I	GCTTCATTTGCTA	.	108.0	15.0	66.0	0.0	.	253	.	.	Atlas-SNP
GRIA2	2891	hgsc.bcm.edu	hg19	4	158257008	158257008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	GRIA2	NM_000826	exon10	c.G1452A	p.M484I	TGGGATGGTTGGA	.	168.0	32.0	92.0	0.0	.	358	.	.	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	hg19	4	175897786	175897786	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ADAM29	NM_001130703	exon4	c.T1110C	p.S370S	TTGTAGTTATGGT	.	108.0	25.0	75.0	0.0	.	262	.	.	Atlas-SNP
VEGFC	7424	hgsc.bcm.edu	hg19	4	177608548	177608548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	VEGFC	NM_005429	exon6	c.A938G	p.N313S	CATGAGTTTCTGT	.	78.0	7.0	62.0	0.0	.	94	.	.	Atlas-SNP
C5orf38	153571	hgsc.bcm.edu	hg19	5	2752404	2752404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	C5orf38	NM_178569	exon1	c.T26C	p.F9S	GGGTCTTCCTCCG	.	157.0	30.0	228.0	0.0	.	20	.	.	Atlas-SNP
EGFLAM	133584	hgsc.bcm.edu	hg19	5	38431349	38431349	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EGFLAM	NM_001205301	exon15	c.T2125C	p.L709L	GGAATCTTACAGG	.	129.0	10.0	79.0	0.0	.	302	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90449149	90449149	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	GPR98	NM_032119	exon89	c.C18736T	p.Q6246X	TATGGCCAGGGGT	.	115.0	11.0	98.0	0.0	.	605	.	.	Atlas-SNP
FAM81B	153643	hgsc.bcm.edu	hg19	5	94749835	94749835	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FAM81B	NM_152548	exon4	c.C478T	p.L160L	AAGTTACTGGAAA	.	140.0	7.0	95.0	0.0	.	51	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127645693	127645693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FBN2	NM_001999	exon40	c.G5182T	p.G1728X	GGCCTCCATTGAC	.	216.0	59.0	129.0	0.0	.	858	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127681186	127681186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	FBN2_ENST00000508053,NS,carcinoma,0,4	FBN2	NM_001999	exon24	c.G3080T	p.C1027F	ACAGCACAGCAGC	.	192.0	18.0	204.0	0.0	.	858	.	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	hg19	5	131953889	131953889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	RAD50_ENST00000265335,NS,carcinoma,0,2	RAD50	NM_005732	exon21	c.C3292T	p.R1098W	CAATTTCGGGATG	.	359.0	44.0	405.0	0.0	.	246	.	.	Atlas-SNP
PHF15	23338	hgsc.bcm.edu	hg19	5	133902158	133902158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PHF15	NM_015288	exon9	c.A1322T	p.Q441L	CCAACCAGCCGCT	.	117.0	36.0	173.0	0.0	.	60	.	.	Atlas-SNP
PCDHA5	56143	hgsc.bcm.edu	hg19	5	140203048	140203048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	PCDHA5_ENST00000529859,colon,carcinoma,0,2	PCDHA5	NM_018908	exon1	c.C1688T	p.A563V	CGCCGGCGCTGCT	.	91.0	27.0	121.0	0.0	.	361	.	.	Atlas-SNP
PCDHB4	56131	hgsc.bcm.edu	hg19	5	140501987	140501987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PCDHB4	NM_018938	exon1	c.A407T	p.E136V	AAAGGGAAGTGCT	.	163.0	53.0	156.0	0.0	.	177	.	.	Atlas-SNP
ZNF300	91975	hgsc.bcm.edu	hg19	5	150275988	150275988	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF300	NM_001172831	exon7	c.T861C	p.C287C	TGTAACACATACA	.	110.0	28.0	53.0	0.0	.	69	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151771949	151771949	+	Missense_Mutation	SNP	A	A	T	rs368060763		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NMUR2	NM_020167	exon4	c.T1051A	p.S351T	GCTGGGAGTGCCA	.	175.0	17.0	108.0	0.0	.	111	.	.	Atlas-SNP
NSD1	64324	hgsc.bcm.edu	hg19	5	176722371	176722371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NSD1	NM_022455	exon23	c.G8002A	p.G2668R	GGAAGAGGGCAAG	.	243.0	25.0	268.0	0.0	.	416	.	.	Atlas-SNP
MXD3	83463	hgsc.bcm.edu	hg19	5	176734612	176734612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	MXD3	NM_031300	exon6	c.C598T	p.H200Y	CGCCGTGCGAGTA	.	105.0	10.0	177.0	0.0	.	13	.	.	Atlas-SNP
CNOT6	57472	hgsc.bcm.edu	hg19	5	179980384	179980384	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CNOT6	NM_015455	exon4	c.300-2A>G	.	ATCAACAGGGAGC	.	164.0	15.0	138.0	0.0	.	47	.	.	Atlas-SNP
BTNL9	153579	hgsc.bcm.edu	hg19	5	180475133	180475133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	BTNL9	NM_152547	exon3	c.T316A	p.L106M	ACCAAGTTGGTCA	.	153.0	30.0	189.0	0.0	.	58	.	.	Atlas-SNP
CPNE5	57699	hgsc.bcm.edu	hg19	6	36710255	36710255	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CPNE5	NM_020939	exon21	c.C1572T	p.P524P	CCGGAAGGGTACA	.	33.0	6.0	68.0	0.0	.	56	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38840728	38840728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	DNAH8_ENST00000359357,NS,carcinoma,0,2	DNAH8	NM_001206927	exon51	c.G7284T	p.W2428C	CATCTGGATTGAG	.	141.0	28.0	101.0	0.0	.	1239	.	.	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	hg19	6	55924015	55924015	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	COL21A1	NM_030820	exon29	c.A2634G	p.K878K	GCTCCCTTTTTCC	.	110.0	5.0	53.0	0.0	.	201	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	65301778	65301778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EYS	NM_001142800	exon26	c.A3982T	p.I1328F	TGACAATCAGTTC	.	98.0	11.0	56.0	0.0	.	527	.	.	Atlas-SNP
COL12A1	1303	hgsc.bcm.edu	hg19	6	75904566	75904566	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	COL12A1	NM_004370	exon3	c.A171T	p.I57I	CACCGTTATTCTG	.	97.0	16.0	65.0	0.0	.	385	.	.	Atlas-SNP
SNAP91	9892	hgsc.bcm.edu	hg19	6	84269864	84269864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SNAP91	NM_001242792	exon27	c.A2590G	p.M864V	GCCTCATCATGGG	.	258.0	36.0	172.0	0.0	.	199	.	.	Atlas-SNP
PRDM13	59336	hgsc.bcm.edu	hg19	6	100057084	100057084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PRDM13	NM_021620	exon3	c.G298A	p.D100N	TTGCGAGACGTCC	.	119.0	18.0	135.0	0.0	.	65	.	.	Atlas-SNP
GINM1	116254	hgsc.bcm.edu	hg19	6	149903658	149903658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_138785	exon7	c.T800G	p.L267W	AGTTTTTGAACAT	.	173.0	38.0	204.0	0.0	.	.	.	.	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	hg19	6	168434666	168434666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KIF25	NM_030615	exon4	c.A272T	p.Q91L	ACCCACAGAGTGA	.	147.0	18.0	219.0	0.0	.	75	.	.	Atlas-SNP
ISPD	729920	hgsc.bcm.edu	hg19	7	16460814	16460814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ISPD	NM_001101426	exon1	c.A134C	p.Q45P	ACGGCTTGCGGGT	.	536.0	67.0	964.0	0.0	.	63	.	.	Atlas-SNP
NFE2L3	9603	hgsc.bcm.edu	hg19	7	26224237	26224237	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NFE2L3	NM_004289	exon4	c.C919T	p.Q307X	TTCAGCCAGGCTA	.	222.0	13.0	173.0	0.0	.	77	.	.	Atlas-SNP
HOXA2	3199	hgsc.bcm.edu	hg19	7	27142050	27142050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	HOXA2	NM_006735	exon1	c.T70A	p.S24T	GAAAAGATGTCAG	.	516.0	64.0	985.0	0.0	.	56	.	.	Atlas-SNP
PDE1C	5137	hgsc.bcm.edu	hg19	7	31918662	31918662	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PDE1C	NM_001191058	exon5	c.G552A	p.K184K	CCGGGGCTTCTCG	.	65.0	12.0	67.0	0.0	.	465	.	.	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42011935	42011935	+	Splice_Site	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	GLI3	NM_000168	exon14	c.2103+1G>T	.	GACATACCATTGG	.	116.0	6.0	83.0	0.0	.	312	.	.	Atlas-SNP
KIAA1549	57670	hgsc.bcm.edu	hg19	7	138603038	138603038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KIAA1549	NM_020910	exon2	c.G1334A	p.G445E	CCATCCCCTGATC	.	94.0	13.0	101.0	0.0	.	314	.	.	Atlas-SNP
ACTR3B	57180	hgsc.bcm.edu	hg19	7	152457013	152457013	+	Splice_Site	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ACTR3B	NM_001040135	exon1	c.44+2T>A	.	ACCGGGTAAGAGC	.	44.0	14.0	50.0	0.0	.	50	.	.	Atlas-SNP
FABP4	2167	hgsc.bcm.edu	hg19	8	82391106	82391106	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FABP4	NM_001442	exon4	c.A393G	p.R131R	TTATGCTCTCTCA	.	108.0	15.0	65.0	0.0	.	17	.	.	Atlas-SNP
CPNE3	8895	hgsc.bcm.edu	hg19	8	87557040	87557040	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CPNE3	NM_003909	exon9	c.C706G	p.L236V	ACAAAACTGAAAG	.	53.0	12.0	31.0	0.0	.	65	.	.	Atlas-SNP
AZIN1	51582	hgsc.bcm.edu	hg19	8	103851904	103851904	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	AZIN1	NM_015878	exon5	c.G250C	p.G84R	CGGTTCCAAGAGC	.	274.0	14.0	242.0	0.0	.	26	.	.	Atlas-SNP
CDKN2B	1030	hgsc.bcm.edu	hg19	9	22008820	22008820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CDKN2B	NM_078487	exon1	c.C133A	p.R45S	CGAAACGGTTGAC	.	100.0	5.0	181.0	0.0	.	12	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84606758	84606758	+	Missense_Mutation	SNP	T	T	C	rs201640408	bycluster	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_001001670	exon4	c.T1373C	p.I458T	CCTCAATTGCTGT	.	183.0	22.0	155.0	0.0	.	.	.	.	Atlas-SNP
NR5A1	2516	hgsc.bcm.edu	hg19	9	127265483	127265483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NR5A1	NM_004959	exon3	c.C119T	p.T40M	TGCACCGTGCGCT	.	43.0	7.0	97.0	0.0	.	32	.	.	Atlas-SNP
OLFML2A	169611	hgsc.bcm.edu	hg19	9	127570169	127570169	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	OLFML2A	NM_182487	exon7	c.C1278T	p.D426D	TCGAGACGACAGG	.	87.0	12.0	186.0	0.0	.	61	.	.	Atlas-SNP
SPTAN1	6709	hgsc.bcm.edu	hg19	9	131339545	131339545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SPTAN1	NM_003127	exon7	c.A923G	p.E308G	CTCTAGAAGACAA	.	102.0	10.0	74.0	0.0	.	266	.	.	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135779815	135779815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TSC1	NM_000368	exon16	c.A2024G	p.D675G	GTCCAGTCGACAG	.	103.0	10.0	107.0	0.0	.	167	.	.	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	hg19	10	61029804	61029804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FAM13C	NM_198215	exon7	c.G658C	p.V220L	TCCCCACAGAGTG	.	76.0	8.0	58.0	0.0	.	124	.	.	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61847908	61847908	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ANK3	NM_001204404	exon30	c.C3540A	p.L1180L	TACCTGGAGGCCC	.	60.0	8.0	73.0	0.0	.	703	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73567129	73567129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CDH23	NM_022124	exon56	c.G8274T	p.E2758D	AGATGAGGGCCCC	.	120.0	6.0	213.0	0.0	.	365	.	.	Atlas-SNP
PNLIPRP3	119548	hgsc.bcm.edu	hg19	10	118202687	118202687	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PNLIPRP3	NM_001011709	exon3	c.324+1G>C	.	TGCAATGTATGAC	.	91.0	7.0	67.0	0.0	.	101	.	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	hg19	11	4944890	4944890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	OR51G1	NM_001005237	exon1	c.T680C	p.V227A	CTGAGCACGGTGC	.	90.0	19.0	71.0	0.0	.	74	.	.	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	hg19	11	11374643	11374643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_001256686	exon1	c.G24T	p.R8S	TCTGGCCCTGCTT	.	113.0	9.0	120.0	0.0	.	.	.	.	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	hg19	11	89173873	89173873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	NOX4,NS,carcinoma,0,1	NOX4	NM_001143836	exon6	c.A458T	p.K153I	AGAAGTTTTCTAG	.	248.0	34.0	294.0	0.0	.	101	.	.	Atlas-SNP
LAYN	143903	hgsc.bcm.edu	hg19	11	111431016	111431016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LAYN	NM_001258390	exon8	c.T982C	p.S328P	GACATGTCTTGTG	.	167.0	33.0	162.0	0.0	.	35	.	.	Atlas-SNP
AMICA1	120425	hgsc.bcm.edu	hg19	11	118071326	118071326	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	AMICA1	NM_001098526	exon7	c.A774G	p.T258T	CACCAGTGCTTGG	.	76.0	12.0	89.0	0.0	.	49	.	.	Atlas-SNP
ITFG2	55846	hgsc.bcm.edu	hg19	12	2932026	2932026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ITFG2	NM_018463	exon10	c.C1015T	p.R339C	CACAACCGCACCG	.	85.0	5.0	150.0	0.0	.	38	.	.	Atlas-SNP
ATF7IP	55729	hgsc.bcm.edu	hg19	12	14578068	14578068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ATF7IP	NM_018179	exon2	c.G1219A	p.V407I	GATCTTGTAGAAA	.	110.0	16.0	105.0	0.0	.	136	.	.	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	hg19	12	32729344	32729344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FGD4	NM_139241	exon3	c.G53C	p.S18T	AACCCAGTAAGGT	.	121.0	19.0	181.0	0.0	.	86	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50189083	50189083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	NCKAP5L	NM_001037806	exon8	c.G2560A	p.G854S	TACTACCACAGTC	.	46.0	4.0	76.0	0.0	.	142	.	.	Atlas-SNP
TARBP2	6895	hgsc.bcm.edu	hg19	12	53895919	53895919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TARBP2	NM_134323	exon2	c.C174A	p.H58Q	AGCCCACCAGCCT	.	84.0	18.0	127.0	0.0	.	35	.	.	Atlas-SNP
AGAP2	116986	hgsc.bcm.edu	hg19	12	58131312	58131312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	AGAP2_ENST00000547588,NS,carcinoma,0,1	AGAP2	NM_001122772	exon1	c.G718A	p.A240T	CGGCGGCGGTGGC	.	60.0	3.0	114.0	1.0	.	167	.	.	Atlas-SNP
SLC35E3	55508	hgsc.bcm.edu	hg19	12	69145812	69145812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SLC35E3	NM_018656	exon3	c.T514C	p.W172R	TTTCAGTGGGTAG	.	66.0	8.0	101.0	0.0	.	23	.	.	Atlas-SNP
KCNC2	3747	hgsc.bcm.edu	hg19	12	75601611	75601611	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KCNC2	NM_139137	exon2	c.C153T	p.G51G	CTTGTCGCCCGCC	.	47.0	9.0	96.0	0.0	.	239	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85546802	85546802	+	Missense_Mutation	SNP	A	A	T	rs202153512		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LRRIQ1	NM_001079910	exon21	c.A4420T	p.I1474F	GAAAAGATTCCTG	.	220.0	13.0	136.0	0.0	.	512	.	.	Atlas-SNP
APAF1	317	hgsc.bcm.edu	hg19	12	99042536	99042536	+	Missense_Mutation	SNP	A	A	G	rs139951279	alternate_allele	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	APAF1	NM_001160	exon3	c.A271G	p.I91V	GATGGCATTCCTG	.	101.0	33.0	129.0	0.0	.	111	.	A|1.000;T|0.000	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	hg19	12	101577959	101577959	+	Silent	SNP	T	T	C	rs367557492		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SLC5A8	NM_145913	exon8	c.A1005G	p.P335P	AAGTCCTGGATAA	.	203.0	16.0	190.0	0.0	.	102	.	.	Atlas-SNP
HCAR2	338442	hgsc.bcm.edu	hg19	12	123187336	123187336	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	HCAR2	NM_177551	exon1	c.G495A	p.K165K	CATCTTCTTCTTC	.	79.0	7.0	66.0	0.0	.	36	.	.	Atlas-SNP
CCNA1	8900	hgsc.bcm.edu	hg19	13	37011796	37011796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CCNA1	NM_003914	exon3	c.T328C	p.S110P	TCTGGATCAGAAA	.	133.0	18.0	128.0	0.0	.	91	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39261494	39261494	+	Missense_Mutation	SNP	G	G	C	rs374997939	alternate_allele	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FREM2	NM_207361	exon1	c.G13C	p.G5R	TCAGCCGGGACTC	.	234.0	24.0	341.0	0.0	.	385	.	.	Atlas-SNP
COG6	57511	hgsc.bcm.edu	hg19	13	40256306	40256306	+	Splice_Site	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	COG6	NM_001145079	exon8	c.695-2A>T	.	TTTTTCAGGTGAA	.	352.0	20.0	354.0	0.0	.	49	.	.	Atlas-SNP
VWA8	23078	hgsc.bcm.edu	hg19	13	42263626	42263626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_015058	exon34	c.C3995T	p.P1332L	TTATGAGGTATGC	.	61.0	5.0	22.0	0.0	.	.	.	.	Atlas-SNP
PHF11	51131	hgsc.bcm.edu	hg19	13	50097317	50097317	+	Missense_Mutation	SNP	G	G	A	rs368988100		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PHF11	NM_001040443	exon7	c.G577A	p.E193K	CCACCCGAAACAA	.	223.0	17.0	221.0	0.0	.	20	.	.	Atlas-SNP
NALCN	259232	hgsc.bcm.edu	hg19	13	101755543	101755543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	NALCN,NS,carcinoma,0,1	NALCN	NM_052867	exon26	c.G3037A	p.G1013S	TGAAGCCGCTGAA	.	94.0	11.0	53.0	0.0	.	431	.	.	Atlas-SNP
EFNB2	1948	hgsc.bcm.edu	hg19	13	107145464	107145464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EFNB2	NM_004093	exon5	c.G926A	p.G309D	TAGTCGCCGCTGA	.	43.0	7.0	58.0	0.0	.	39	.	.	Atlas-SNP
RIPK3	11035	hgsc.bcm.edu	hg19	14	24808688	24808688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	RIPK3,NS,carcinoma,0,1	RIPK3	NM_006871	exon2	c.G136A	p.D46N	CCACATCGTAGCC	.	80.0	21.0	122.0	0.0	.	43	.	.	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	hg19	14	42355944	42355944	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LRFN5	NM_152447	exon3	c.A116T	p.K39M	GTGCCAAGAAAGG	.	151.0	22.0	163.0	0.0	.	269	.	.	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	hg19	14	45535866	45535866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FAM179B	NM_015091	exon16	c.G4486T	p.G1496C	ATAACTGGCTTAT	.	87.0	8.0	82.0	0.0	.	115	.	.	Atlas-SNP
SNURF	8926	hgsc.bcm.edu	hg19	15	25213176	25213176	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SNURF	NM_005678	exon3	c.G208C	p.G70R	CCAAGAGGTGGTT	.	78.0	22.0	67.0	0.0	.	17	.	.	Atlas-SNP
BTBD1	53339	hgsc.bcm.edu	hg19	15	83686886	83686886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	BTBD1	NM_025238	exon8	c.C1382G	p.S461C	CCAGGGGAACTAA	.	190.0	12.0	207.0	0.0	.	32	.	.	Atlas-SNP
POLG	5428	hgsc.bcm.edu	hg19	15	89867412	89867412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	POLG	NM_002693	exon11	c.C1996T	p.Q666X	GCTGCTGCTTCCC	.	33.0	13.0	44.0	0.0	.	75	.	.	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	90986673	90986673	+	Silent	SNP	G	G	A	rs375134287		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	IQGAP1	NM_003870	exon9	c.G876A	p.T292T	GCTCACGCAAGCT	.	244.0	53.0	177.0	0.0	.	140	.	.	Atlas-SNP
IGF1R	3480	hgsc.bcm.edu	hg19	15	99434825	99434825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	IGF1R	NM_000875	exon3	c.G912A	p.M304I	GTGCATGCAGGAG	.	874.0	225.0	1200.0	1.0	.	147	.	.	Atlas-SNP
FBXL16	146330	hgsc.bcm.edu	hg19	16	744414	744414	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	FBXL16	NM_153350	exon6	c.T1301G	p.L434R	GTGAGCAGCGGGC	.	113.0	16.0	198.0	0.0	.	25	.	.	Atlas-SNP
PKD1	5310	hgsc.bcm.edu	hg19	16	2161188	2161188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PKD1	NM_000296	exon15	c.A3980C	p.D1327A	GTCCAGTCGAAGA	.	63.0	9.0	83.0	0.0	.	184	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21139036	21139036	+	Silent	SNP	G	G	A	rs370177232	alternate_allele	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DNAH3	NM_017539	exon8	c.C1180T	p.L394L	CCTCCAGGCAGTG	.	67.0	14.0	84.0	0.0	.	1142	.	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23706194	23706194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ERN2	NM_033266	exon17	c.G2099C	p.G700A	CCCAGGCCCTGGC	.	71.0	8.0	130.0	0.0	.	131	.	.	Atlas-SNP
PFAS	5198	hgsc.bcm.edu	hg19	17	8168227	8168227	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PFAS	NM_012393	exon18	c.G2064T	p.V688V	CTCTGTGGGAGGC	.	100.0	10.0	116.0	0.0	.	91	.	.	Atlas-SNP
GPR179	440435	hgsc.bcm.edu	hg19	17	36491002	36491002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	GPR179	NM_001004334	exon7	c.C1559A	p.A520E	AGAGGTGCGTGCT	.	163.0	25.0	302.0	0.0	.	170	.	.	Atlas-SNP
BRIP1	83990	hgsc.bcm.edu	hg19	17	59763365	59763365	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	BRIP1	NM_032043	exon19	c.T2737G	p.S913A	TTAAAGAGGTCAC	.	184.0	32.0	150.0	0.0	.	237	.	.	Atlas-SNP
EFCAB3	146779	hgsc.bcm.edu	hg19	17	60464701	60464701	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EFCAB3	NM_001144933	exon5	c.G231A	p.R77R	CCTCAGGGATAGA	.	71.0	5.0	97.0	0.0	.	71	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6949123	6949123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LAMA1	NM_005559	exon59	c.T8533C	p.Y2845H	CCTGGTACTGGGA	.	117.0	17.0	150.0	0.0	.	458	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31323005	31323005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ASXL3	NM_030632	exon12	c.C3193G	p.R1065G	CAAGCTCGGGCCC	.	60.0	9.0	66.0	0.0	.	405	.	.	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	hg19	18	43248313	43248313	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SLC14A2	NM_001242692	exon16	c.1908-1G>C	.	CTGCCAGGTCGGC	.	66.0	15.0	71.0	0.0	.	121	.	.	Atlas-SNP
SERPINB7	8710	hgsc.bcm.edu	hg19	18	61460472	61460472	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SERPINB7	NM_001261830	exon4	c.G297C	p.V99V	CATTGTGAATGGG	.	94.0	12.0	122.0	0.0	.	66	.	.	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1434870	1434870	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DAZAP1	NM_018959	exon12	c.C1183T	p.Q395X	CGAGGGCAGAACC	.	75.0	13.0	129.0	0.0	.	52	.	.	Atlas-SNP
ICAM5	7087	hgsc.bcm.edu	hg19	19	10403481	10403481	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ICAM5	NM_003259	exon5	c.C1155T	p.A385A	CGACGCCACCCTC	.	97.0	15.0	169.0	0.0	.	53	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10597429	10597429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	KEAP1	NM_012289	exon6	c.A1774G	p.S592G	CCTCGCTCCAGGT	.	70.0	11.0	99.0	0.0	.	182	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17086047	17086047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CPAMD8	NM_015692	exon17	c.T2071G	p.Y691D	CATCATAATCTTC	.	105.0	12.0	206.0	0.0	.	192	.	.	Atlas-SNP
SLC7A10	56301	hgsc.bcm.edu	hg19	19	33703796	33703796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SLC7A10	NM_019849	exon3	c.C469A	p.P157T	TGGTGGGGGGGAT	.	109.0	9.0	154.0	0.0	.	43	.	.	Atlas-SNP
PDCD2L	84306	hgsc.bcm.edu	hg19	19	34916924	34916924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PDCD2L	NM_032346	exon7	c.G976A	p.V326I	ATTCTAGTTTACA	.	67.0	11.0	77.0	0.0	.	27	.	.	Atlas-SNP
PSG11	5680	hgsc.bcm.edu	hg19	19	43522945	43522945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PSG11	NM_002785	exon3	c.A686G	p.D229G	ACTGGGTCACTGC	.	64.0	8.0	37.0	0.0	.	57	.	.	Atlas-SNP
EXOC3L2	90332	hgsc.bcm.edu	hg19	19	45721458	45721458	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	EXOC3L2	NM_138568	exon7	c.C660T	p.Y220Y	CACCTGGTAAGGC	.	107.0	12.0	141.0	0.0	.	30	.	.	Atlas-SNP
PPP1R13L	10848	hgsc.bcm.edu	hg19	19	45895303	45895303	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PPP1R13L	NM_001142502	exon8	c.C1650T	p.L550L	ATGGAAGAGGCGG	.	155.0	9.0	214.0	0.0	.	66	.	.	Atlas-SNP
OPA3	80207	hgsc.bcm.edu	hg19	19	46032653	46032653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	OPA3	NM_001017989	exon2	c.C204G	p.I68M	CGGCTTGATGGCA	.	229.0	14.0	339.0	0.0	.	19	.	.	Atlas-SNP
PPP5C	5536	hgsc.bcm.edu	hg19	19	46893576	46893576	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PPP5C	NM_006247	exon13	c.C1473T	p.N491N	TGCCAACACGCTG	.	107.0	28.0	113.0	0.0	.	44	.	.	Atlas-SNP
CCDC155	147872	hgsc.bcm.edu	hg19	19	49920284	49920284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CCDC155	NM_144688	exon18	c.G1387C	p.V463L	CTCCCTGTCCCTC	.	74.0	5.0	107.0	0.0	.	46	.	.	Atlas-SNP
ZNF577	84765	hgsc.bcm.edu	hg19	19	52375853	52375853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF577	NM_032679	exon7	c.A1390G	p.N464D	CTTCATTTGTGAG	.	57.0	15.0	52.0	0.0	.	63	.	.	Atlas-SNP
PPP2R1A	5518	hgsc.bcm.edu	hg19	19	52716305	52716305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PPP2R1A	NM_014225	exon6	c.A749T	p.Q250L	TGCGCCAGGCCGC	.	50.0	26.0	69.0	0.0	.	187	.	.	Atlas-SNP
ZNF766	90321	hgsc.bcm.edu	hg19	19	52793824	52793824	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF766	NM_001010851	exon4	c.A780C	p.R260R	TGCACGACACGAG	.	113.0	27.0	140.0	0.0	.	45	.	.	Atlas-SNP
ZNF611	81856	hgsc.bcm.edu	hg19	19	53217352	53217352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF611	NM_030972	exon6	c.G106T	p.A36S	ACTCTGCCAATGA	.	80.0	11.0	56.0	0.0	.	72	.	.	Atlas-SNP
ZNF677	342926	hgsc.bcm.edu	hg19	19	53740801	53740801	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF677	NM_182609	exon5	c.T1179C	p.H393H	TCTCTTATGTTGG	.	114.0	12.0	129.0	0.0	.	94	.	.	Atlas-SNP
LENG9	94059	hgsc.bcm.edu	hg19	19	54974120	54974120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	LENG9	NM_198988	exon1	c.G656T	p.C219F	CCTGTGCAGAGCG	.	82.0	8.0	125.0	0.0	.	46	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56011328	56011328	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SSC5D	NM_001195267	exon10	c.C1851A	p.T617T	AACAACCACGAAG	.	108.0	11.0	135.0	0.0	.	65	.	.	Atlas-SNP
ZNF8	7554	hgsc.bcm.edu	hg19	19	58806125	58806125	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF8	NM_021089	exon4	c.A951G	p.E317E	TGCCGAATGTGGG	.	110.0	8.0	119.0	0.0	.	60	.	.	Atlas-SNP
LAMP5	24141	hgsc.bcm.edu	hg19	20	9496915	9496915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_012261	exon4	c.A382C	p.M128L	CACAACATGTCCA	.	90.0	24.0	125.0	0.0	.	.	.	.	Atlas-SNP
BPIFB1	92747	hgsc.bcm.edu	hg19	20	31877770	31877770	+	Missense_Mutation	SNP	C	C	A	rs114635109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_033197	exon4	c.C337A	p.P113T	AAGATCCCCCTGG	.	93.0	7.0	121.0	0.0	.	.	.	C|0.988;T|0.012	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57769710	57769710	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ZNF831	NM_178457	exon1	c.T3636C	p.P1212P	CTTTCCTGGTAGC	.	104.0	23.0	160.0	0.0	.	287	.	.	Atlas-SNP
CLTCL1	8218	hgsc.bcm.edu	hg19	22	19187289	19187289	+	Missense_Mutation	SNP	C	C	T	rs201881044	bycluster	TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	CLTCL1	NM_001835	exon24	c.G3829A	p.V1277I	GAATGACGATGTG	.	42.0	10.0	81.0	0.0	.	115	.	.	Atlas-SNP
PI4KA	5297	hgsc.bcm.edu	hg19	22	21098986	21098986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PI4KA	NM_058004	exon30	c.C3386T	p.P1129L	CAGGCCGGGCGCT	.	44.0	9.0	66.0	0.0	.	313	.	.	Atlas-SNP
SUSD2	56241	hgsc.bcm.edu	hg19	22	24583419	24583419	+	Splice_Site	SNP	G	G	C	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SUSD2	NM_019601	exon11	c.1891+1G>C	.	CCAACTGTGAGTG	.	33.0	5.0	51.0	0.0	.	68	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38121679	38121679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TRIOBP	NM_001039141	exon7	c.C3116G	p.P1039R	CCTTCCCCTTCTT	.	112.0	24.0	203.0	0.0	.	262	.	.	Atlas-SNP
DDX17	10521	hgsc.bcm.edu	hg19	22	38890726	38890726	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DDX17	NM_006386	exon8	c.A1123T	p.T375S	TCTGGGTGTAATC	.	111.0	10.0	159.0	0.0	.	73	.	.	Atlas-SNP
TAF1	6872	hgsc.bcm.edu	hg19	X	70617187	70617187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	TAF1	NM_004606	exon23	c.G3551A	p.R1184H	CTGGACGCTGTCT	.	175.0	38.0	218.0	0.0	.	439	.	.	Atlas-SNP
PGK1	5230	hgsc.bcm.edu	hg19	X	77359873	77359873	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	PGK1	NM_000291	exon1	c.G36A	p.L12L	CAAGCTGGACGTT	.	39.0	21.0	51.0	0.0	.	34	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123526164	123526164	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	.	NM_001163278	exon28	c.A5426T	p.D1809V	ATATGATCAAAAT	.	67.0	31.0	44.0	0.0	.	.	.	.	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	hg19	2	167266354	167266355	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SCN7A	NM_002976	exon24	c.3803_3804insA	p.M1268fs	.	.	183.0	23.0	120.0	0.0	.	410	.	.	Atlas-INDEL
BAP1	8314	hgsc.bcm.edu	hg19	3	52436677	52436708	+	In_Frame_Del	DEL	CTCTGGTCATCAATCTGTAGGAGAGAAGAAGA	CTCTGGTCATCAATCTGTAGGAGAGAAGAAGA	-	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	CTCTGGTCATCAATCTGTAGGAGAGAAGAAGA	CTCTGGTCATCAATCTGTAGGAGAGAAGAAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	BAP1	NM_004656	exon16	c.1984_1998del	p.662_666del	.	.	73.0	10.0	137.0	0.0	.	371	.	.	Atlas-Indel,Pindel
IDH2	3418	hgsc.bcm.edu	hg19	15	90628312	90628313	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	IDH2	NM_002168	exon9	c.1099_1100insC	p.N367fs	.	.	43.0	12.0	77.0	0.0	.	1372	.	.	Atlas-INDEL
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178554970	178554970	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	ADAMTS2	NM_014244	exon17	c.2608delT	p.C870fs	.	.	42.0	10.0	68.0	0.0	.	190	.	.	Atlas-Indel,Pindel
DKK2	27123	hgsc.bcm.edu	hg19	4	107847000	107847022	+	Frame_Shift_Del	DEL	CAGCGCTTCTTTTTTCTCCGACA	CAGCGCTTCTTTTTTCTCCGACA	-	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	CAGCGCTTCTTTTTTCTCCGACA	CAGCGCTTCTTTTTTCTCCGACA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	DKK2	NM_014421	exon2	c.308_330del	p.103_110del	.	.	76.0	12.0	58.0	0.0	.	96	.	.	Pindel
SCN7A	6332	hgsc.bcm.edu	hg19	2	167266356	167266357	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SCN7A	NM_002976	exon24	c.3801_3802del	p.1267_1268del	.	.	180.0	16.0	119.0	0.0	.	410	.	.	Pindel
SARM1	23098	hgsc.bcm.edu	hg19	17	26708300	26708318	+	Frame_Shift_Del	DEL	TGGGTCAGGCATCTTGGAG	TGGGTCAGGCATCTTGGAG	-	novel		TCGA-2Y-A9H3-01A-11D-A382-10	TCGA-2Y-A9H3-10A-01D-A385-10	TGGGTCAGGCATCTTGGAG	TGGGTCAGGCATCTTGGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	4d274d44-da17-4591-ad59-a37a868e32d8	6e97c9c0-1710-4ff7-8fdc-180aaf2cfd90	.	SARM1	NM_015077	exon3	c.545_563del	p.182_188del	.	.	173.0	13.0	303.0	0.0	.	40	.	.	Pindel