Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PIAS3 10401 hgsc.bcm.edu hg19 1 145578670 145578670 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PIAS3 NM_006099 exon3 c.A476G p.H159R AAGCGCACTTTAC . 123.0 13.0 142.0 0.0 . 96 . . Atlas-SNP OR2L3 391192 hgsc.bcm.edu hg19 1 248224048 248224048 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OR2L3 NM_001004687 exon1 c.T65C p.I22T CAAGAATTGGCCT . 124.0 50.0 145.0 0.0 . 97 . . Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11798629 11798629 + Silent SNP C C T rs150650740 TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NTSR2 NM_012344 exon4 c.G1209A p.G403G GGGATCCCCAAAG . 125.0 37.0 96.0 0.0 . 36 . C|1.000;T|0.000 Atlas-SNP NTSR2 23620 hgsc.bcm.edu hg19 2 11810006 11810006 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NTSR2 NM_012344 exon1 c.C250G p.L84V CGACCAGCAGCAG . 70.0 4.0 66.0 0.0 . 36 . . Atlas-SNP RGPD4 285190 hgsc.bcm.edu hg19 2 108488174 108488174 + Silent SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RGPD4 NM_182588 exon20 c.C3714A p.P1238P AAAACCCAATCCT . 158.0 104.0 233.0 0.0 . 112 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210777350 210777350 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . UNC80 NM_032504 exon29 c.G4651A p.G1551R CTGGAAGGAAAAA . 84.0 29.0 95.0 0.0 . 280 . . Atlas-SNP KLHL40 131377 hgsc.bcm.edu hg19 3 42727774 42727774 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff KBTBD5,NS,carcinoma,0,1 . NM_152393 exon1 c.G664A p.E222K GTCTTCGAGAGCG . 64.0 32.0 78.0 0.0 . . . . Atlas-SNP CISH 1154 hgsc.bcm.edu hg19 3 50649061 50649061 + Splice_Site SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . CISH NM_145071 exon2 c.20+1G>A . CGCTTACCCCTGA . 190.0 60.0 275.0 0.0 . 27 . . Atlas-SNP HPS3 84343 hgsc.bcm.edu hg19 3 148858010 148858010 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . HPS3 NM_032383 exon2 c.G437A p.G146E TGAAAGGAGACCT . 213.0 94.0 159.0 0.0 . 104 . . Atlas-SNP LIPH 200879 hgsc.bcm.edu hg19 3 185234915 185234915 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . LIPH NM_139248 exon7 c.G922T p.G308W CTTTCCCCCTTAG . 104.0 40.0 129.0 0.0 . 56 . . Atlas-SNP HS3ST1 9957 hgsc.bcm.edu hg19 4 11401383 11401383 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . HS3ST1 NM_005114 exon2 c.G247T p.A83S TCTCCGCGGCCGC . 67.0 25.0 79.0 0.0 . 41 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47907301 47907301 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NFXL1 NM_152995 exon4 c.G469C p.A157P TCATAGCCCCTGC . 88.0 4.0 88.0 0.0 . 79 . . Atlas-SNP INTU 27152 hgsc.bcm.edu hg19 4 128625436 128625436 + Silent SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . INTU NM_015693 exon10 c.A1557G p.L519L TTCTCTATTTTAC . 128.0 8.0 89.0 0.0 . 92 . . Atlas-SNP FGA 2243 hgsc.bcm.edu hg19 4 155507053 155507053 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . FGA NM_000508 exon5 c.C1528T p.R510C TATGGCGGAACCC . 76.0 31.0 70.0 0.0 . 179 . . Atlas-SNP PLCXD3 345557 hgsc.bcm.edu hg19 5 41382054 41382054 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PLCXD3 NM_001005473 exon2 c.T686C p.L229P GCTTGAAGAAACT . 132.0 42.0 82.0 0.0 . 86 . . Atlas-SNP CHSY3 337876 hgsc.bcm.edu hg19 5 129240619 129240619 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . CHSY3 NM_175856 exon1 c.G97A p.E33K GTGGCGGAGCTGA . 39.0 11.0 57.0 0.0 . 92 . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130769233 130769233 + Silent SNP T T C rs373104489 TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RAPGEF6 NM_001164387 exon27 c.A3903G p.L1301L ATCCTGTAGAGCT . 137.0 69.0 134.0 0.0 . 361 . . Atlas-SNP PCDHA12 56137 hgsc.bcm.edu hg19 5 140257029 140257029 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PCDHA12 NM_018903 exon1 c.G1972A p.A658T GAGCCCGCGCTGA . 195.0 102.0 185.0 0.0 . 196 . . Atlas-SNP CLK4 57396 hgsc.bcm.edu hg19 5 178040819 178040819 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff CLK4_ENST00000316308,NS,carcinoma,0,2 CLK4 NM_020666 exon6 c.A568C p.I190L TTACGATTTTCAC . 129.0 81.0 129.0 0.0 . 103 . . Atlas-SNP TRIM7 81786 hgsc.bcm.edu hg19 5 180622567 180622567 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TRIM7 NM_203293 exon7 c.C1135T p.R379C CGAAGCGGCAGGG . 160.0 7.0 166.0 0.0 . 56 . . Atlas-SNP VWA7 80737 hgsc.bcm.edu hg19 6 31736935 31736935 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . . NM_025258 exon10 c.G1363A p.A455T GCCGAGCTCGACC . 54.0 19.0 74.0 0.0 . . . . Atlas-SNP TDRD6 221400 hgsc.bcm.edu hg19 6 46658262 46658262 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TDRD6 NM_001168359 exon1 c.A2397C p.K799N ACTTAAAACTCTA . 140.0 65.0 149.0 0.0 . 205 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12410068 12410068 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . VWDE NM_001135924 exon12 c.T1864G p.Y622D TACAATAGGATGG . 23.0 11.0 22.0 0.0 . 123 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100685401 100685401 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . MUC17 NM_001040105 exon3 c.G10704T p.M3568I GCGTATGTCTACT . 81.0 40.0 89.0 0.0 . 804 . . Atlas-SNP AGBL3 340351 hgsc.bcm.edu hg19 7 134719306 134719306 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . AGBL3 NM_178563 exon7 c.T964G p.F322V TCAAAGTTTTGTA . 108.0 47.0 98.0 0.0 . 45 . . Atlas-SNP SNX16 64089 hgsc.bcm.edu hg19 8 82752214 82752214 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SNX16 NM_152836 exon2 c.C8A p.T3N TAAGGAGTTGCCA . 37.0 11.0 50.0 0.0 . 21 . . Atlas-SNP GPIHBP1 338328 hgsc.bcm.edu hg19 8 144297217 144297217 + Missense_Mutation SNP A A T rs369222108 alternate_allele TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . GPIHBP1 NM_178172 exon4 c.A379T p.T127S CAGGTGACCATGA . 114.0 61.0 104.0 0.0 . 12 . . Atlas-SNP GNA14 9630 hgsc.bcm.edu hg19 9 80144021 80144021 + Silent SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . GNA14 NM_004297 exon2 c.C273T p.D91D TAGCGTGTCCATC . 117.0 34.0 128.0 0.0 . 50 . . Atlas-SNP MSANTD3-TMEFF1 100526694 hgsc.bcm.edu hg19 9 103278965 103278965 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . . NM_001198812 exon5 c.G694A p.G232R GAGGAAGGGTCAG . 101.0 32.0 133.0 0.0 . . . . Atlas-SNP PAPPA 5069 hgsc.bcm.edu hg19 9 119097256 119097256 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PAPPA NM_002581 exon13 c.G3514A p.A1172T CTGGTCGCCATCT . 72.0 24.0 98.0 0.0 . 243 . . Atlas-SNP SLC22A18AS 5003 hgsc.bcm.edu hg19 11 2920711 2920711 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SLC22A18AS NM_007105 exon3 c.G221C p.G74A CTTCCTCCAGTCA . 101.0 18.0 89.0 0.0 . 7 . . Atlas-SNP PRRG4 79056 hgsc.bcm.edu hg19 11 32875007 32875007 + Silent SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PRRG4 NM_024081 exon6 c.A615G p.P205P ACCACCACCATAT . 97.0 41.0 122.0 0.0 . 15 . . Atlas-SNP OR4S2 219431 hgsc.bcm.edu hg19 11 55419121 55419121 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OR4S2 NM_001004059 exon1 c.T742C p.F248L GTTATCTTTTTCG . 124.0 43.0 81.0 0.0 . 89 . . Atlas-SNP RELA 5970 hgsc.bcm.edu hg19 11 65422301 65422301 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RELA NM_021975 exon11 c.G1204T p.A402S CCAGAGCTGATAC . 108.0 41.0 153.0 0.0 . 44 . . Atlas-SNP OAF 220323 hgsc.bcm.edu hg19 11 120082155 120082155 + Silent SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OAF NM_178507 exon1 c.C168T p.S56S GGACAGCATCAGC . 106.0 41.0 155.0 0.0 . 12 . . Atlas-SNP OR6X1 390260 hgsc.bcm.edu hg19 11 123624701 123624701 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff OR6X1,NS,malignant_melanoma,0,1 OR6X1 NM_001005188 exon1 c.T526C p.Y176H CACAGTAGAAATG . 70.0 25.0 79.0 0.0 . 54 . . Atlas-SNP OR8D4 338662 hgsc.bcm.edu hg19 11 123777184 123777184 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OR8D4 NM_001005197 exon1 c.G46A p.G16R CTTTCAGGATTAA . 56.0 22.0 55.0 0.0 . 62 . . Atlas-SNP GUCY2C 2984 hgsc.bcm.edu hg19 12 14839106 14839106 + Silent SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . GUCY2C NM_004963 exon3 c.C384T p.T128T CTGGAAGGTGGAG . 67.0 28.0 83.0 0.0 . 126 . . Atlas-SNP ASUN 55726 hgsc.bcm.edu hg19 12 27059306 27059306 + Silent SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . . NM_018164 exon16 c.G2010A p.Q670Q AAATTCCTGATGT . 93.0 10.0 98.0 0.0 . . . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43858526 43858526 + Nonsense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . ADAMTS20 NM_025003 exon10 c.C1377A p.Y459X TTCCCCGTAACCA . 58.0 29.0 56.0 0.0 . 635 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43858528 43858528 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . ADAMTS20 NM_025003 exon10 c.T1375A p.Y459N CCCCGTAACCAGT . 57.0 28.0 57.0 0.0 . 635 . . Atlas-SNP SELPLG 6404 hgsc.bcm.edu hg19 12 109017847 109017847 + Silent SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SELPLG NM_001206609 exon2 c.G285A p.E95E GGTAGACTCAGGG . 83.0 29.0 133.0 0.0 . 138 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23910913 23910913 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SACS NM_014363 exon10 c.G7102T p.A2368S ATGGTGCCGCCTC . 93.0 42.0 82.0 0.0 . 871 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35632969 35632969 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NBEA NM_015678 exon8 c.T1208G p.F403C AGATATTTGCAAT . 345.0 134.0 295.0 1.0 . 340 . . Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 36180583 36180583 + Silent SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NBEA NM_015678 exon48 c.C7317T p.Y2439Y GTTCTACTACCTA . 108.0 41.0 107.0 0.0 . 340 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103402336 103402336 + Silent SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . . NM_001146197 exon4 c.C711T p.A237A TAAGTGGGCAAGA . 69.0 11.0 60.0 0.0 . . . . Atlas-SNP SAMD4A 23034 hgsc.bcm.edu hg19 14 55034783 55034783 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SAMD4A NM_015589 exon1 c.C149G p.A50G CGCTGGCCGACTG . 13.0 5.0 23.0 0.0 . 68 . . Atlas-SNP DAAM1 23002 hgsc.bcm.edu hg19 14 59835462 59835462 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . DAAM1 NM_014992 exon25 c.G3122A p.R1041H CTTTACGCTCAGG . 166.0 65.0 146.0 0.0 . 95 . . Atlas-SNP VRTN 55237 hgsc.bcm.edu hg19 14 74823991 74823991 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . VRTN NM_018228 exon2 c.A505T p.S169C CCCAGCAGCTTCT . 23.0 15.0 39.0 0.0 . 79 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 33765670 33765670 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RYR3 NM_001243996 exon2 c.G102T p.R34S GCAGAGGAAGTTC . 56.0 16.0 47.0 0.0 . 760 . . Atlas-SNP EIF2AK4 440275 hgsc.bcm.edu hg19 15 40259627 40259627 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . EIF2AK4 NM_001013703 exon9 c.A1100G p.K367R ATCTCAAAGAGCA . 170.0 36.0 177.0 0.0 . 107 . . Atlas-SNP SPESP1 246777 hgsc.bcm.edu hg19 15 69238044 69238044 + Silent SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SPESP1 NM_145658 exon2 c.A171G p.K57K GAAAAAATCTAAC . 212.0 84.0 213.0 0.0 . 39 . . Atlas-SNP RHBDL1 9028 hgsc.bcm.edu hg19 16 727559 727559 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RHBDL1 NM_003961 exon5 c.G984T p.M328I TGTCATGGTAACG . 40.0 16.0 46.0 0.0 . 14 . . Atlas-SNP OTOA 146183 hgsc.bcm.edu hg19 16 21739616 21739616 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OTOA NM_144672 exon19 c.C2071T p.H691Y CTGTGTCACTTGC . 72.0 23.0 97.0 0.0 . 144 . . Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38186019 38186019 + Silent SNP A A G novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . MED24 NM_014815 exon13 c.T1248C p.T416T TGTGACAGTGGGC . 66.0 30.0 86.0 0.0 . 89 . . Atlas-SNP RNMT 8731 hgsc.bcm.edu hg19 18 13741655 13741655 + Nonsense_Mutation SNP T T A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . RNMT NM_003799 exon7 c.T939A p.Y313X GGGCTATTTTATT . 82.0 30.0 104.0 0.0 . 42 . . Atlas-SNP NETO1 81832 hgsc.bcm.edu hg19 18 70461395 70461395 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . NETO1 NM_001201465 exon6 c.C596A p.A199D TCAACAGCCTCGC . 200.0 38.0 158.0 0.0 . 178 . . Atlas-SNP TJP3 27134 hgsc.bcm.edu hg19 19 3728689 3728689 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TJP3 NM_001267561 exon3 c.G163A p.G55R CCTGGAGGGCCGG . 81.0 34.0 93.0 0.0 . 79 . . Atlas-SNP OR7A5 26659 hgsc.bcm.edu hg19 19 14938215 14938215 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . OR7A5 NM_017506 exon1 c.T839A p.V280E GTGACCACAGTGT . 58.0 29.0 91.0 0.0 . 43 . . Atlas-SNP SIRPG 55423 hgsc.bcm.edu hg19 20 1616060 1616060 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . SIRPG NM_018556 exon4 c.A934T p.S312C ACCAGCTTGTCCA . 155.0 54.0 206.0 0.0 . 61 . . Atlas-SNP TAF4 6874 hgsc.bcm.edu hg19 20 60639513 60639513 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TAF4 NM_003185 exon1 c.C1354T p.P452S CTGGGGGCAGCTG . 68.0 16.0 71.0 0.0 . 84 . . Atlas-SNP TTC3 7267 hgsc.bcm.edu hg19 21 38538061 38538061 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TTC3 NM_001001894 exon33 c.G3545A p.R1182K AAAAAAGGAAGAA . 70.0 31.0 62.0 0.0 . 182 . . Atlas-SNP TNMD 64102 hgsc.bcm.edu hg19 X 99854661 99854661 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . TNMD NM_022144 exon7 c.C901T p.R301C ATCTGTCGTGTCA . 99.0 87.0 72.0 0.0 . 40 . . Atlas-SNP GPRASP1 9737 hgsc.bcm.edu hg19 X 101909785 101909785 + Missense_Mutation SNP C C T rs17339512 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . GPRASP1 NM_001099411 exon3 c.C944T p.A315V AGGAGGCCAAATT . 86.0 4.0 57.0 0.0 . 140 . C|0.962;G|0.038 Atlas-SNP IRS4 8471 hgsc.bcm.edu hg19 X 107978096 107978096 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . IRS4 NM_003604 exon1 c.G1479T p.W493C TGAGCCCCAATTG . 116.0 55.0 70.0 0.0 . 253 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128320011 128320012 + Frame_Shift_Ins INS - - A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . PTPRK NM_001135648 exon16 c.2533_2534insT p.L845fs . . 106.0 36.0 65.0 0.0 . 330 . . Atlas-Indel,Pindel ST8SIA6 338596 hgsc.bcm.edu hg19 10 17363249 17363249 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . ST8SIA6 NM_001004470 exon8 c.826delA p.N276fs . . 206.0 30.0 220.0 0.0 . 85 . . Atlas-Indel,Pindel UPF3B 65109 hgsc.bcm.edu hg19 X 118975219 118975222 + Frame_Shift_Del DEL TCTC TCTC - novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 TCTC TCTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . UPF3B NM_023010 exon7 c.625_628del p.209_210del . . 38.0 30.0 26.0 0.0 . 74 . . Atlas-Indel,Pindel TP53 7157 hgsc.bcm.edu hg19 17 7579420 7579420 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff TP53_ENST00000455263,NS,carcinoma,0,1 TP53 NM_001126112 exon4 c.268delT p.S90fs . . 105.0 62.0 168.0 0.0 . 33396 . . Atlas-Indel,Pindel USP34 9736 hgsc.bcm.edu hg19 2 61597513 61597514 + Frame_Shift_Ins INS - - A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . USP34 NM_014709 exon10 c.1194_1195insT p.L398fs . . 354.0 118.0 333.0 0.0 . 334 . . Atlas-Indel,Pindel DNAJC14 85406 hgsc.bcm.edu hg19 12 56222310 56222310 + Frame_Shift_Del DEL T T - novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . DNAJC14 NM_032364 exon2 c.134delC p.T45fs . . 142.0 51.0 163.0 0.0 . 52 . . Atlas-Indel,Pindel HNRNPA1 3178 hgsc.bcm.edu hg19 12 54675175 54675176 + Frame_Shift_Ins INS - - A novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . HNRNPA1 NM_002136 exon2 c.21_22insA p.P7fs . . 77.0 21.0 94.0 0.0 . 72 . . Pindel FLT4 2324 hgsc.bcm.edu hg19 5 180041181 180041214 + Splice_Site DEL TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA - novel TCGA-2Y-A9H4-01A-11D-A382-10 TCGA-2Y-A9H4-10A-01D-A385-10 TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA TGGGGAGACAGAGGGAAGCTTGTCCCGTGGTGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq a12a5c70-7c82-4f2b-972f-81a029234685 cc2a8833-5e36-487f-bcb8-1fcb198152ff . FLT4 . . . . . . 96.0 14.0 93.0 0.0 . 356 . . Pindel