Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm FHAD1 114827 hgsc.bcm.edu hg19 1 15707915 15707915 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . FHAD1 NM_052929 exon29 c.G3924T p.L1308F GCTGTTGAGAGGA . 105.0 53.0 170.0 0.0 . 78 . . Atlas-SNP SPEN 23013 hgsc.bcm.edu hg19 1 16257447 16257447 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SPEN NM_015001 exon11 c.G4712T p.S1571I CAAACAGCACAAC . 109.0 5.0 197.0 0.0 . 374 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 33999415 33999415 + Silent SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CSMD2 NM_052896 exon62 c.A9540G p.G3180G TGGGGTTCCACTC . 78.0 43.0 125.0 0.0 . 946 . . Atlas-SNP CYP4B1 1580 hgsc.bcm.edu hg19 1 47276518 47276518 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CYP4B1 NM_000779 exon2 c.G219T p.W73C GTCCTGGGCCCAC . 57.0 32.0 63.0 0.0 . 81 . . Atlas-SNP FCRL5 83416 hgsc.bcm.edu hg19 1 157504613 157504613 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . FCRL5 NM_031281 exon8 c.C1472T p.T491I TGAAGTGTCACAG . 223.0 125.0 93.0 0.0 . 177 . . Atlas-SNP POGK 57645 hgsc.bcm.edu hg19 1 166818813 166818813 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . POGK NM_017542 exon5 c.G997A p.E333K CTGCCGGAAGACC . 111.0 55.0 95.0 0.0 . 54 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237532889 237532889 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb RYR2,colon,carcinoma,+1,1 RYR2 NM_001035 exon6 c.G365A p.R122H TGCTGCGCCATTC . 141.0 13.0 70.0 0.0 . 1273 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247007207 247007207 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . AHCTF1 NM_015446 exon34 c.C6442T p.Q2148X TCAGCTGTGCAGG . 689.0 161.0 434.0 0.0 . 187 . . Atlas-SNP SLC1A4 6509 hgsc.bcm.edu hg19 2 65248223 65248223 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SLC1A4 NM_003038 exon8 c.C1542T p.N514N CCAGAACCCCGCT . 187.0 11.0 205.0 0.0 . 33 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141457818 141457818 + Splice_Site SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LRP1B NM_018557 exon42 c.6799+1G>A . TACTTACTTTCAA . 73.0 37.0 46.0 0.0 . 1315 . . Atlas-SNP NEUROD1 4760 hgsc.bcm.edu hg19 2 182543445 182543445 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NEUROD1 NM_002500 exon2 c.C143T p.A48V TCCTCTGCGTTCA . 67.0 31.0 75.0 0.0 . 67 . . Atlas-SNP DIS3L2 129563 hgsc.bcm.edu hg19 2 232880381 232880381 + Silent SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . DIS3L2 NM_001257282 exon3 c.G210A p.Q70Q CATCCAGGTGCTT . 68.0 31.0 25.0 0.0 . 77 . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78706267 78706267 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ROBO1 NM_002941 exon18 c.G2595A p.E865E CTGAGGCTCACTC . 61.0 25.0 65.0 0.0 . 833 . . Atlas-SNP LRRC66 339977 hgsc.bcm.edu hg19 4 52861214 52861214 + Silent SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LRRC66 NM_001024611 exon4 c.C1974T p.Y658Y GTCACCGTATGGA . 44.0 21.0 35.0 0.0 . 128 . . Atlas-SNP PAQR3 152559 hgsc.bcm.edu hg19 4 79851430 79851430 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . PAQR3 NM_001040202 exon3 c.C398T p.S133L TTTTCTGACCGAT . 114.0 42.0 57.0 0.0 . 28 . . Atlas-SNP SEC31A 22872 hgsc.bcm.edu hg19 4 83800020 83800020 + Silent SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb SEC31A_ENST00000432794,right_upper_lobe,carcinoma,0,2 SEC31A NM_001077206 exon4 c.C265T p.L89L CAATCAGAACTCC . 341.0 127.0 285.0 1.0 . 227 . . Atlas-SNP AGPAT9 84803 hgsc.bcm.edu hg19 4 84502954 84502954 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . AGPAT9 NM_001256421 exon4 c.A448T p.I150L GGCGTCATAGTGC . 118.0 42.0 89.0 0.0 . 41 . . Atlas-SNP NDST3 9348 hgsc.bcm.edu hg19 4 119161760 119161760 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NDST3 NM_004784 exon11 c.G2200A p.E734K CCCTCGGAGCTCA . 122.0 46.0 65.0 0.0 . 107 . . Atlas-SNP SLC10A7 84068 hgsc.bcm.edu hg19 4 147431063 147431063 + Splice_Site SNP A A T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SLC10A7 NM_001029998 exon4 c.320+2T>A . AAACATACCCTTT . 128.0 51.0 113.0 0.0 . 32 . . Atlas-SNP BRD9 65980 hgsc.bcm.edu hg19 5 887508 887508 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . BRD9 NM_023924 exon6 c.A685T p.I229F GAAGGATCTTCTT . 73.0 17.0 72.0 0.0 . 113 . . Atlas-SNP EMB 133418 hgsc.bcm.edu hg19 5 49695712 49695712 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . EMB NM_198449 exon8 c.T947C p.V316A CTGGGGACATTAT . 416.0 129.0 227.0 0.0 . 42 . . Atlas-SNP SRFBP1 153443 hgsc.bcm.edu hg19 5 121355923 121355923 + Missense_Mutation SNP A A G rs374380607 TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SRFBP1 NM_152546 exon6 c.A493G p.I165V ACTGTCATCAGTG . 181.0 56.0 132.0 0.0 . 47 . . Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135692906 135692906 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . TRPC7 NM_001167576 exon2 c.C170T p.P57L ACCACCGGGATGT . 79.0 24.0 67.0 0.0 . 126 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141324975 141324975 + Missense_Mutation SNP C C T rs3833449 bycluster TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . PCDH12 NM_016580 exon4 c.G3526A p.G1176S TGCTGCCTCTGCT . 72.0 10.0 95.0 0.0 . 133 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141324976 141324976 + Missense_Mutation SNP T T G rs13188049 bycluster TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . PCDH12 NM_016580 exon4 c.A3525C p.R1175S GCTGCCTCTGCTC . 72.0 9.0 100.0 0.0 . 133 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7585481 7585481 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . DSP NM_004415 exon24 c.C7986T p.H2662H CATCCACCCAACC . 249.0 65.0 144.0 0.0 . 306 . . Atlas-SNP HIST1H3F 8968 hgsc.bcm.edu hg19 6 26250518 26250518 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . HIST1H3F NM_021018 exon1 c.G316A p.E106K TGTCCTCAAAGAG . 149.0 7.0 125.0 0.0 . 16 . . Atlas-SNP OR11A1 26531 hgsc.bcm.edu hg19 6 29394996 29394996 + Silent SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . OR11A1 NM_013937 exon1 c.G423T p.R141R CATGTACCGTCTG . 120.0 35.0 66.0 0.0 . 30 . . Atlas-SNP DAAM2 23500 hgsc.bcm.edu hg19 6 39824089 39824089 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb DAAM2,rectum,NS,0,1 DAAM2 NM_015345 exon2 c.G11A p.R4H CCCCCCGCAAGAG . 114.0 5.0 88.0 0.0 . 101 . . Atlas-SNP GFRAL 389400 hgsc.bcm.edu hg19 6 55264182 55264182 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . GFRAL NM_207410 exon8 c.C1064T p.A355V TCTATGCTGCCAT . 316.0 91.0 167.0 0.0 . 91 . . Atlas-SNP MALSU1 115416 hgsc.bcm.edu hg19 7 23338995 23338995 + Silent SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . . NM_138446 exon1 c.G24A p.A8A TGTGGCGCGGCTG . 104.0 9.0 89.0 0.0 . . . . Atlas-SNP NRCAM 4897 hgsc.bcm.edu hg19 7 107875102 107875102 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NRCAM NM_001037132 exon3 c.C155A p.S52Y TTTGGAGACTGTT . 97.0 25.0 62.0 0.0 . 267 . . Atlas-SNP AGPAT5 55326 hgsc.bcm.edu hg19 8 6566226 6566226 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . AGPAT5 NM_018361 exon1 c.C37T p.R13C TCCATGCGCTACC . 22.0 7.0 39.0 0.0 . 31 . . Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 32600258 32600258 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NRG1 NM_013962 exon5 c.C1241A p.S414Y GTACGTCCACTCC . 50.0 22.0 44.0 0.0 . 260 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 68965476 68965476 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb PREX2_ENST00000354677,NS,carcinoma,0,6 PREX2 NM_025170 exon9 c.G1088A p.R363Q AACGGCGGAAAGG . 246.0 62.0 112.0 0.0 . 614 . . Atlas-SNP DCSTAMP 81501 hgsc.bcm.edu hg19 8 105360974 105360974 + Missense_Mutation SNP G G T rs149253106 alternate_allele TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . . NM_001257317 exon2 c.G194T p.W65L CCTCCTGGATTAT . 128.0 18.0 65.0 0.0 . . . G|1.000;A|0.000 Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124659239 124659239 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb KLHL38,NS,carcinoma,0,1 KLHL38 NM_001081675 exon2 c.A1366G p.R456G AGTTTCTGGAAAT . 167.0 75.0 115.0 0.0 . 81 . . Atlas-SNP TMEM2 23670 hgsc.bcm.edu hg19 9 74327050 74327050 + Silent SNP G G C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . TMEM2 NM_013390 exon16 c.C2718G p.S906S CTGCCAGGAATTC . 105.0 36.0 99.0 0.0 . 112 . . Atlas-SNP TLE1 7088 hgsc.bcm.edu hg19 9 84202721 84202721 + Nonsense_Mutation SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb TLE1,NS,carcinoma,0,2 TLE1 NM_005077 exon17 c.G1852T p.G618X TGGCTCCGTCTGT . 61.0 29.0 72.0 0.0 . 81 . . Atlas-SNP FGD3 89846 hgsc.bcm.edu hg19 9 95797700 95797700 + Silent SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . FGD3 NM_001083536 exon18 c.G2007T p.G669G CTCGGGGCATGTG . 81.0 37.0 168.0 0.0 . 116 . . Atlas-SNP NEK6 10783 hgsc.bcm.edu hg19 9 127074820 127074820 + Silent SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NEK6 NM_001166171 exon4 c.G225A p.S75S CTGCTCGCTGGCG . 43.0 10.0 92.0 0.0 . 47 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 141016411 141016411 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CACNA1B NM_000718 exon46 c.G6980A p.R2327Q GAGCACGGCACAG . 19.0 10.0 42.0 0.0 . 266 . . Atlas-SNP CUL2 8453 hgsc.bcm.edu hg19 10 35320492 35320492 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CUL2 NM_001198778 exon13 c.A1283G p.N428S ACTTCATTCTCTG . 107.0 33.0 103.0 0.0 . 63 . . Atlas-SNP NODAL 4838 hgsc.bcm.edu hg19 10 72195410 72195410 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NODAL NM_018055 exon2 c.A523G p.R175G CTACCCTGGACAT . 133.0 39.0 140.0 0.0 . 32 . . Atlas-SNP NKX2-3 159296 hgsc.bcm.edu hg19 10 101295220 101295220 + Silent SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NKX2-3 NM_145285 exon2 c.C837A p.A279A CGCCGCCGCCGCC . 34.0 5.0 32.0 0.0 . 11 . . Atlas-SNP RBM20 282996 hgsc.bcm.edu hg19 10 112404251 112404251 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . RBM20 NM_001134363 exon1 c.C39T p.P13P GGACCCCAGCGGT . 1138.0 379.0 1078.0 0.0 . 50 . . Atlas-SNP OR51F2 119694 hgsc.bcm.edu hg19 11 4842843 4842843 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . OR51F2 NM_001004753 exon1 c.C228G p.F76L CTATTTCCTCTCT . 129.0 41.0 58.0 0.0 . 72 . . Atlas-SNP LDHC 3948 hgsc.bcm.edu hg19 11 18467772 18467772 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LDHC NM_002301 exon7 c.C726T p.I242I AATTATCAAGCTG . 92.0 35.0 103.0 0.0 . 37 . . Atlas-SNP PAMR1 25891 hgsc.bcm.edu hg19 11 35456179 35456179 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . PAMR1 NM_015430 exon11 c.G1558A p.A520T AGTGGGCAGCCAC . 119.0 45.0 96.0 0.0 . 85 . . Atlas-SNP KCNA1 3736 hgsc.bcm.edu hg19 12 5021467 5021467 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . KCNA1 NM_000217 exon2 c.A923T p.H308L CCCGCCACTCTAA . 81.0 15.0 85.0 0.0 . 112 . . Atlas-SNP CLEC7A 64581 hgsc.bcm.edu hg19 12 10279240 10279240 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CLEC7A NM_197947 exon3 c.G270T p.E90D GTGGTTCTCTTTA . 105.0 30.0 110.0 0.0 . 55 . . Atlas-SNP DERA 51071 hgsc.bcm.edu hg19 12 16109926 16109926 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . DERA NM_015954 exon2 c.G88A p.E30K CGTGCGGAACAAA . 134.0 48.0 94.0 0.0 . 20 . . Atlas-SNP RACGAP1 29127 hgsc.bcm.edu hg19 12 50386074 50386074 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . RACGAP1 NM_013277 exon16 c.A1532G p.N511S TCTGGATTGGGCA . 100.0 32.0 65.0 0.0 . 36 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57605033 57605033 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LRP1 NM_002332 exon84 c.A12991T p.T4331S CGCTGCACTGCCT . 81.0 26.0 76.0 0.0 . 428 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 130184653 130184653 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb TMEM132D,NS,carcinoma,0,1 TMEM132D NM_133448 exon2 c.G670A p.V224M GCTCCACGGGGGT . 89.0 28.0 73.0 0.0 . 299 . . Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39587824 39587824 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . . NM_025138 exon11 c.C1565T p.S522L ATGGCTGATGGGG . 93.0 34.0 110.0 0.0 . . . . Atlas-SNP LHFP 10186 hgsc.bcm.edu hg19 13 39952662 39952662 + Silent SNP G G C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LHFP NM_005780 exon3 c.C387G p.G129G CAACAAGCCTGCA . 58.0 28.0 51.0 0.0 . 31 . . Atlas-SNP GZMB 3002 hgsc.bcm.edu hg19 14 25102229 25102229 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . GZMB NM_004131 exon2 c.G95A p.R32H TAGGGGCGGGAGT . 82.0 32.0 63.0 0.0 . 73 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94046579 94046579 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . UNC79 NM_020818 exon19 c.C1987A p.Q663K GTCTTCCAAGCCC . 117.0 6.0 103.0 0.0 . 366 . . Atlas-SNP CYFIP1 23191 hgsc.bcm.edu hg19 15 22940832 22940832 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CYFIP1 NM_014608 exon11 c.A1097G p.Y366C CGCGCTACAGCAA . 192.0 56.0 210.0 0.0 . 159 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48736756 48736756 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . FBN1 NM_000138 exon49 c.C6019T p.Q2007X CATTTTGAAGACT . 95.0 12.0 33.0 0.0 . 310 . . Atlas-SNP FANCI 55215 hgsc.bcm.edu hg19 15 89826381 89826381 + Missense_Mutation SNP G G A rs368127142 TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . FANCI NM_001113378 exon17 c.G1598A p.R533Q ATGCCCGAAAATC . 68.0 27.0 63.0 0.0 . 129 . . Atlas-SNP ZNF18 7566 hgsc.bcm.edu hg19 17 11881727 11881727 + Silent SNP T T G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ZNF18 NM_144680 exon9 c.A1197C p.P399P GGCTCTTGGCTGC . 100.0 27.0 61.0 0.0 . 42 . . Atlas-SNP GIT1 28964 hgsc.bcm.edu hg19 17 27903137 27903137 + Missense_Mutation SNP C C T rs374985717 TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . GIT1 NM_001085454 exon16 c.G1651A p.D551N TGGCGTCGTCCTC . 65.0 25.0 127.0 0.0 . 84 . . Atlas-SNP CACNA1G 8913 hgsc.bcm.edu hg19 17 48703836 48703836 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CACNA1G NM_018896 exon38 c.C6858T p.D2286D CACAGACCCCTCT . 144.0 29.0 216.0 0.0 . 659 . . Atlas-SNP TBX2 6909 hgsc.bcm.edu hg19 17 59482827 59482827 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . TBX2 NM_005994 exon6 c.C1316T p.A439V AGGAGGCGGCCGA . 93.0 12.0 123.0 0.0 . 30 . . Atlas-SNP ATP8B1 5205 hgsc.bcm.edu hg19 18 55315840 55315840 + Silent SNP C C T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ATP8B1 NM_005603 exon28 c.G3636A p.S1212S CTGGTGCGAGAAG . 93.0 4.0 144.0 0.0 . 126 . . Atlas-SNP ATP13A1 57130 hgsc.bcm.edu hg19 19 19757110 19757110 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ATP13A1 NM_020410 exon23 c.A3152G p.N1051S TACAGGTTGAAGA . 120.0 36.0 162.0 0.0 . 82 . . Atlas-SNP CLASRP 11129 hgsc.bcm.edu hg19 19 45570624 45570624 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CLASRP NM_007056 exon14 c.G1439A p.R480K GCTACAGGCGGGG . 78.0 37.0 98.0 0.0 . 44 . . Atlas-SNP LRRC4B 94030 hgsc.bcm.edu hg19 19 51021449 51021449 + Silent SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LRRC4B NM_001080457 exon3 c.G1521T p.R507R CGTCCCCCGCGGC . 35.0 12.0 50.0 0.0 . 89 . . Atlas-SNP NFATC2 4773 hgsc.bcm.edu hg19 20 50139906 50139906 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . NFATC2 NM_012340 exon2 c.G874T p.A292S ACCCAGCCGGGGA . 114.0 39.0 141.0 0.0 . 112 . . Atlas-SNP DGCR14 8220 hgsc.bcm.edu hg19 22 19126717 19126717 + Silent SNP G G C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . DGCR14 NM_022719 exon6 c.C777G p.A259A GCTCAGGGCTTGG . 69.0 20.0 74.0 0.0 . 43 . . Atlas-SNP HCCS 3052 hgsc.bcm.edu hg19 X 11132958 11132958 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . HCCS NM_001122608 exon3 c.G104T p.C35F CAGGCTGTCCAGT . 82.0 15.0 47.0 0.0 . 17 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32235037 32235037 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . DMD NM_004006 exon44 c.T6434A p.L2145H ACCTTAAGATACC . 427.0 37.0 227.0 0.0 . 2127 . . Atlas-SNP HDAC6 10013 hgsc.bcm.edu hg19 X 48678643 48678643 + Missense_Mutation SNP G G T rs186499554 bycluster;by1000genomes;alternate_allele TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . HDAC6 NM_006044 exon23 c.G2318T p.R773L GTGGCCGCATTAT . 93.0 25.0 105.0 0.0 . 111 . G|0.999;A|0.001 Atlas-SNP KIAA2022 340533 hgsc.bcm.edu hg19 X 73963443 73963443 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . KIAA2022 NM_001008537 exon3 c.T949G p.F317V CCTGAAAGGATTC . 206.0 75.0 105.0 0.0 . 262 . . Atlas-SNP TENM1 10178 hgsc.bcm.edu hg19 X 123517915 123517915 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . . NM_001163278 exon30 c.A6866C p.H2289P TACAAATGAGTAA . 140.0 64.0 74.0 0.0 . . . . Atlas-SNP SLITRK4 139065 hgsc.bcm.edu hg19 X 142718857 142718857 + Missense_Mutation SNP G G A rs376093373 TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SLITRK4 NM_001184750 exon2 c.C68T p.S23L TCCACCGATATGT . 392.0 128.0 317.0 0.0 . 162 . . Atlas-SNP SRPK3 26576 hgsc.bcm.edu hg19 X 153049751 153049751 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . SRPK3 NM_014370 exon11 c.C1150G p.P384A CCAGCACCATTCG . 213.0 69.0 280.0 0.0 . 63 . . Atlas-SNP HOXB4 3214 hgsc.bcm.edu hg19 17 46655285 46655285 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . HOXB4 NM_024015 exon1 c.398delA p.H133fs . . 71.0 22.0 84.0 0.0 . 16 . . Atlas-Indel,Pindel ACVR2A 92 hgsc.bcm.edu hg19 2 148672850 148672853 + Frame_Shift_Del DEL TGGA TGGA - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 TGGA TGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ACVR2A NM_001616 exon5 c.618_621del p.206_207del . . 160.0 72.0 102.0 0.0 . 125 . . Atlas-Indel,Pindel CDH1 999 hgsc.bcm.edu hg19 16 68867249 68867250 + Frame_Shift_Ins INS - - T novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . CDH1 NM_004360 exon16 c.2496_2497insT p.V832fs . . 80.0 29.0 84.0 0.0 . 535 . . Atlas-Indel,Pindel KLHDC7A 127707 hgsc.bcm.edu hg19 1 18807799 18807799 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . KLHDC7A NM_152375 exon1 c.323delC p.T108fs . . 155.0 16.0 308.0 0.0 . 60 . . Atlas-Indel,Pindel LARP1B 55132 hgsc.bcm.edu hg19 4 128999019 128999019 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . LARP1B NM_032239 exon4 c.118delA p.S40fs . . 406.0 59.0 399.0 0.0 . 120 . . Atlas-Indel,Pindel VPS37B 79720 hgsc.bcm.edu hg19 12 123380577 123380585 + In_Frame_Del DEL GGCGAACCG GGCGAACCG - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 GGCGAACCG GGCGAACCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . VPS37B NM_024667 exon1 c.26_34del p.9_12del . . 60.0 16.0 67.0 0.0 . 26 . . Atlas-Indel,Pindel ELF3 1999 hgsc.bcm.edu hg19 1 201981100 201981101 + Frame_Shift_Ins INS - - G novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ELF3 NM_004433 exon3 c.179_180insG p.L60fs . . 200.0 92.0 189.0 0.0 . 92 . . Atlas-Indel,Pindel ZNF800 168850 hgsc.bcm.edu hg19 7 127014128 127014128 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . ZNF800 NM_176814 exon5 c.1263delT p.P421fs . . 173.0 42.0 99.0 0.0 . 78 . . Pindel PEG10 23089 hgsc.bcm.edu hg19 7 94293724 94293727 + Frame_Shift_Del DEL AAAG AAAG - novel TCGA-2Y-A9H5-01A-11D-A382-10 TCGA-2Y-A9H5-10A-01D-A385-10 AAAG AAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 10106872-3169-465f-900a-b6e74debfc51 978cf657-0928-40db-9f1c-888305de2cbb . PEG10 NM_001172438 exon2 c.1083_1086del p.361_362del . . 142.0 29.0 163.0 0.0 . 36 . . Pindel