Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
FPGT-TNNI3K	100526835	hgsc.bcm.edu	hg19	1	74819702	74819702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	.	NM_001112808	exon13	c.G1369A	p.V457I	CGCCTGGTTCAGT	.	68.0	33.0	79.0	0.0	.	.	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152883099	152883099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	IVL	NM_005547	exon2	c.C826T	p.P276S	GAGGTCCCAGAGG	.	287.0	63.0	184.0	0.0	.	100	.	.	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	hg19	1	190067855	190067855	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	FAM5C	NM_199051	exon8	c.C1594A	p.R532R	GCATCCGCTTACG	.	151.0	37.0	82.0	0.0	.	343	.	.	Atlas-SNP
CR2	1380	hgsc.bcm.edu	hg19	1	207649630	207649630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CR2	NM_001006658	exon15	c.G2768A	p.G923D	ATACTGGTGGAAA	.	195.0	47.0	46.0	0.0	.	164	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227223280	227223280	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CDC42BPA	NM_003607	exon24	c.T3123C	p.C1041C	GTTTACACAAGTT	.	136.0	33.0	67.0	0.0	.	528	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245809435	245809435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	KIF26B_ENST00000407071,colon,carcinoma,0,2	KIF26B	NM_018012	exon10	c.G2111A	p.R704H	GAGGTCGCAGCCG	.	96.0	43.0	31.0	0.0	.	343	.	.	Atlas-SNP
CMPK2	129607	hgsc.bcm.edu	hg19	2	6991720	6991720	+	Missense_Mutation	SNP	G	G	A	rs372816766		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CMPK2	NM_001256477	exon4	c.C1087T	p.P363S	CCTCTGGCCACTG	.	137.0	44.0	80.0	0.0	.	30	.	.	Atlas-SNP
GPR75-ASB3	100302652	hgsc.bcm.edu	hg19	2	53977937	53977937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	ASB3,caecum,carcinoma,0,1	.	NM_001164165	exon3	c.C452T	p.T151M	GGTGTCGTTTCTT	.	84.0	5.0	60.0	0.0	.	.	.	.	Atlas-SNP
MTHFD2	10797	hgsc.bcm.edu	hg19	2	74435849	74435849	+	Splice_Site	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	MTHFD2	NM_006636	exon4	c.562+1G>T	.	GAACTGGTAGGTA	.	114.0	5.0	64.0	0.0	.	43	.	.	Atlas-SNP
ATOH8	84913	hgsc.bcm.edu	hg19	2	85981810	85981810	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	ATOH8	NM_032827	exon1	c.A498G	p.S166S	GCCGTCAGCACCC	.	124.0	38.0	143.0	0.0	.	15	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228881378	228881378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	SPHKAP	NM_030623	exon7	c.C4192A	p.P1398T	CTAAAGGGCTGTG	.	100.0	29.0	76.0	0.0	.	750	.	.	Atlas-SNP
CCR4	1233	hgsc.bcm.edu	hg19	3	32995552	32995552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CCR4	NM_005508	exon2	c.T638A	p.I213N	TGGTGATCCCCTT	.	187.0	102.0	118.0	0.0	.	36	.	.	Atlas-SNP
DNAH12	201625	hgsc.bcm.edu	hg19	3	57496652	57496652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	DNAH12	NM_198564	exon5	c.C334T	p.Q112X	CCTGCTGAATAGG	.	75.0	4.0	84.0	0.0	.	182	.	.	Atlas-SNP
YEATS2	55689	hgsc.bcm.edu	hg19	3	183446490	183446490	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	YEATS2	NM_018023	exon7	c.G663A	p.P221P	ACCTCCGGATAAG	.	116.0	36.0	90.0	0.0	.	111	.	.	Atlas-SNP
MASP1	5648	hgsc.bcm.edu	hg19	3	186980462	186980462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	MASP1	NM_139125	exon3	c.C284T	p.T95I	TCTGTGGTCTCCC	.	311.0	20.0	134.0	0.0	.	240	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47685816	47685816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CORIN	NM_006587	exon7	c.G953T	p.C318F	TTAAGGCACTTGC	.	49.0	21.0	31.0	0.0	.	154	.	.	Atlas-SNP
TIFA	92610	hgsc.bcm.edu	hg19	4	113199372	113199372	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	TIFA	NM_052864	exon2	c.A201T	p.R67R	CTGAACTCGGGAA	.	90.0	40.0	47.0	0.0	.	15	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155156796	155156796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	DCHS2	NM_017639	exon25	c.T7643C	p.L2548S	AACACTAAAAAGG	.	186.0	64.0	67.0	0.0	.	594	.	.	Atlas-SNP
PDCD6	10016	hgsc.bcm.edu	hg19	5	311465	311465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	PDCD6	NM_013232	exon5	c.G425A	p.G142E	GGCAGGGACGGGG	.	102.0	32.0	125.0	0.0	.	24	.	.	Atlas-SNP
FBXL7	23194	hgsc.bcm.edu	hg19	5	15936876	15936876	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	FBXL7,colon,carcinoma,0,1	FBXL7	NM_012304	exon4	c.C1057A	p.R353R	CGCCTGCGGTACC	.	77.0	18.0	79.0	0.0	.	138	.	.	Atlas-SNP
CFB	629	hgsc.bcm.edu	hg19	6	31914168	31914168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CFB	NM_001710	exon2	c.G83T	p.W28L	CTCCATGGTCTTT	.	148.0	56.0	115.0	0.0	.	33	.	.	Atlas-SNP
KIAA0895	23366	hgsc.bcm.edu	hg19	7	36373513	36373513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	KIAA0895	NM_001100425	exon5	c.G1258A	p.D420N	AATAATCCCATCT	.	162.0	54.0	101.0	0.0	.	89	.	.	Atlas-SNP
LRGUK	136332	hgsc.bcm.edu	hg19	7	133821880	133821880	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	LRGUK	NM_144648	exon2	c.A402G	p.L134L	AACTTTATCAGTG	.	74.0	21.0	42.0	0.0	.	113	.	.	Atlas-SNP
TAS2R41	259287	hgsc.bcm.edu	hg19	7	143175617	143175617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	TAS2R41,caecum,carcinoma,0,1	TAS2R41	NM_176883	exon1	c.G652T	p.G218W	CACAACGGGCACA	.	120.0	5.0	50.0	0.0	.	43	.	.	Atlas-SNP
MCMDC2	157777	hgsc.bcm.edu	hg19	8	67789682	67789682	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	MCMDC2	NM_173518	exon5	c.T384C	p.Y128Y	ATTTTATATGATG	.	131.0	35.0	114.0	0.0	.	84	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33932569	33932569	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	UBAP2	NM_018449	exon19	c.G2166A	p.T722T	GTGTGACGTGCTC	.	55.0	30.0	74.0	0.0	.	82	.	.	Atlas-SNP
SARDH	1757	hgsc.bcm.edu	hg19	9	136595229	136595229	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	SARDH	NM_007101	exon5	c.T771G	p.T257T	ATGCTGAGTCTCC	.	76.0	6.0	102.0	0.0	.	112	.	.	Atlas-SNP
OPTN	10133	hgsc.bcm.edu	hg19	10	13154620	13154620	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	OPTN	NM_001008212	exon5	c.T537G	p.V179V	CTTTGTTGAAATT	.	103.0	10.0	115.0	0.0	.	57	.	.	Atlas-SNP
EPS8L2	64787	hgsc.bcm.edu	hg19	11	720644	720644	+	Silent	SNP	G	G	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	EPS8L2	NM_022772	exon6	c.G375C	p.T125T	CCAGACGGTCCTC	.	68.0	35.0	142.0	0.0	.	42	.	.	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	hg19	11	33308510	33308510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	HIPK3	NM_001048200	exon2	c.T550A	p.L184I	TATCAGTTAGTAC	.	88.0	37.0	92.0	0.0	.	92	.	.	Atlas-SNP
KDELC2	143888	hgsc.bcm.edu	hg19	11	108369075	108369075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	KDELC2	NM_153705	exon1	c.G19T	p.A7S	GCAGGGCCCGCGG	.	24.0	7.0	45.0	0.0	.	37	.	.	Atlas-SNP
CHD4	1108	hgsc.bcm.edu	hg19	12	6710863	6710863	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CHD4	NM_001273	exon5	c.G508T	p.E170X	AATCCTCCTCTGA	.	110.0	39.0	111.0	0.0	.	539	.	.	Atlas-SNP
PPFIA2	8499	hgsc.bcm.edu	hg19	12	81769684	81769684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	PPFIA2	NM_001220476	exon9	c.C1022A	p.T341K	AGGGTTGTAATTC	.	95.0	25.0	53.0	0.0	.	207	.	.	Atlas-SNP
TGM1	7051	hgsc.bcm.edu	hg19	14	24729790	24729790	+	Missense_Mutation	SNP	C	C	T	rs369636498		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	TGM1	NM_000359	exon4	c.G623A	p.R208Q	TGGACCCGCAGGT	.	126.0	6.0	161.0	0.0	.	73	.	.	Atlas-SNP
TRPM7	54822	hgsc.bcm.edu	hg19	15	50903454	50903454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	TRPM7	NM_017672	exon17	c.A2116G	p.M706V	ATTTCATAGCCAT	.	107.0	29.0	79.0	0.0	.	145	.	.	Atlas-SNP
LMF1	64788	hgsc.bcm.edu	hg19	16	1020930	1020930	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	LMF1	NM_022773	exon1	c.G51A	p.R17R	CTTCCGCCTCCTC	.	122.0	32.0	141.0	0.0	.	42	.	.	Atlas-SNP
MAPK8IP3	23162	hgsc.bcm.edu	hg19	16	1808157	1808157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	MAPK8IP3	NM_015133	exon9	c.T1222C	p.S408P	GAGTTCTCAGGTG	.	67.0	22.0	91.0	0.0	.	164	.	.	Atlas-SNP
CAMKK1	84254	hgsc.bcm.edu	hg19	17	3788636	3788636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CAMKK1	NM_032294	exon2	c.A346G	p.I116V	CTGAGATGGCCAC	.	75.0	7.0	68.0	0.0	.	70	.	.	Atlas-SNP
USP6	9098	hgsc.bcm.edu	hg19	17	5041019	5041019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	USP6	NM_004505	exon12	c.C899T	p.T300I	CAATAACCAGCAT	.	42.0	13.0	33.0	0.0	.	213	.	.	Atlas-SNP
ACAP1	9744	hgsc.bcm.edu	hg19	17	7247901	7247901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	ACAP1	NM_014716	exon10	c.C788A	p.P263H	AGGGGCCTGGTGG	.	85.0	32.0	71.0	0.0	.	66	.	.	Atlas-SNP
FXR2	9513	hgsc.bcm.edu	hg19	17	7504837	7504837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	FXR2	NM_004860	exon7	c.A550G	p.T184A	CTTCTGTGGTTGA	.	87.0	32.0	104.0	0.0	.	44	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48684344	48684344	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CACNA1G	NM_001256360	exon24	c.C4506T	p.D1502D	CGTGGACCAGCAG	.	65.0	16.0	76.0	0.0	.	659	.	.	Atlas-SNP
CACNG4	27092	hgsc.bcm.edu	hg19	17	65026622	65026622	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	CACNG4	NM_014405	exon4	c.C486T	p.S162S	TTCCAGCAACACA	.	188.0	15.0	230.0	0.0	.	44	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65920661	65920661	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	BPTF	NM_004459	exon17	c.6087-2A>G	.	TCCTGCAGAGTGG	.	274.0	82.0	195.0	0.0	.	415	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80045255	80045255	+	Missense_Mutation	SNP	T	T	C	rs141517558		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	FASN	NM_004104	exon20	c.A3169G	p.I1057V	GGTCGATGTGGAT	.	63.0	18.0	57.0	0.0	.	154	.	T|1.000;C|0.000	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	hg19	18	3729263	3729263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	DLGAP1	NM_001242761	exon7	c.G1463A	p.R488H	CGCATGCGGAAGC	.	177.0	46.0	158.0	0.0	.	201	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65181841	65181841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	DSEL	NM_032160	exon2	c.C35T	p.A12V	ATTAACGCCATGA	.	160.0	9.0	168.0	0.0	.	196	.	.	Atlas-SNP
TMEM259	91304	hgsc.bcm.edu	hg19	19	1011186	1011186	+	Missense_Mutation	SNP	T	T	C	rs369432576		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	.	NM_001033026	exon10	c.A1226G	p.Y409C	TAGAGATAGAAGA	.	58.0	11.0	102.0	0.0	.	.	.	.	Atlas-SNP
PRR19	284338	hgsc.bcm.edu	hg19	19	42814219	42814219	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	PRR19	NM_199285	exon2	c.C483G	p.F161L	GGCCTTCCCCCGG	.	61.0	14.0	67.0	0.0	.	30	.	.	Atlas-SNP
PPFIA3	8541	hgsc.bcm.edu	hg19	19	49651354	49651354	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	PPFIA3	NM_003660	exon24	c.C2850T	p.G950G	ATATGGCGACATG	.	165.0	43.0	149.0	0.0	.	71	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54313990	54313990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	NLRP12_ENST00000345770,NS,carcinoma,0,2	NLRP12	NM_144687	exon3	c.G923A	p.C308Y	CAGGGTCCCTGAG	.	99.0	14.0	100.0	0.0	.	236	.	.	Atlas-SNP
RPN2	6185	hgsc.bcm.edu	hg19	20	35866808	35866808	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	RPN2	NM_001135771	exon16	c.C1791A	p.I597I	CAGGATCGCTGCA	.	127.0	40.0	76.0	0.0	.	45	.	.	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	hg19	X	140995873	140995873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	MAGEC1	NM_005462	exon4	c.G2683A	p.E895K	GACAGCGAGTCCT	.	206.0	70.0	99.0	0.0	.	317	.	.	Atlas-SNP
MAGEA10-MAGEA5	0	hgsc.bcm.edu	hg19	X	151283912	151283912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	.	NM_001204811	exon4	c.A101T	p.E34V	TGCTCCTCAGTAG	.	291.0	111.0	164.0	0.0	.	.	.	.	Atlas-SNP
ZNF275	10838	hgsc.bcm.edu	hg19	X	152612617	152612617	+	Silent	SNP	C	C	T	rs370281502		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	ZNF275	NM_001080485	exon4	c.C474T	p.P158P	CCAGCCCGGCCCC	.	237.0	74.0	203.0	0.0	.	44	.	.	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14393	14393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	.	ENST00000361681	exon1	c.T281C	p.V94A	AACCCCACTAAAA	.	65.0	6.0	25.0	0.0	.	.	.	.	Atlas-SNP
KANSL3	55683	hgsc.bcm.edu	hg19	2	97274706	97274708	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	.	NM_001115016	exon13	c.1478_1480del	p.493_494del	.	.	148.0	38.0	123.0	0.0	.	.	.	.	Atlas-Indel,Pindel
RAD51B	5890	hgsc.bcm.edu	hg19	14	68331792	68331802	+	Frame_Shift_Del	DEL	AACATGGGAGG	AACATGGGAGG	-	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	AACATGGGAGG	AACATGGGAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	RAD51B	NM_002877	exon5	c.387_397del	p.129_133del	.	.	62.0	10.0	66.0	0.0	.	80	.	.	Atlas-INDEL
BAP1	8314	hgsc.bcm.edu	hg19	3	52442001	52442005	+	Frame_Shift_Del	DEL	CTTCA	CTTCA	-	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	CTTCA	CTTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	BAP1	NM_004656	exon5	c.345_349del	p.115_117del	.	.	151.0	67.0	271.0	0.0	.	371	.	.	Atlas-Indel,Pindel
RASA1	5921	hgsc.bcm.edu	hg19	5	86672234	86672234	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	RASA1	NM_002890	exon16	c.2035delC	p.R679fs	.	.	148.0	52.0	59.0	0.0	.	213	.	.	Atlas-Indel,Pindel
MBD1	4152	hgsc.bcm.edu	hg19	18	47800628	47800639	+	In_Frame_Del	DEL	GTCGCAGCAGAA	GTCGCAGCAGAA	-	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	GTCGCAGCAGAA	GTCGCAGCAGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	MBD1_ENST00000457839,colon,carcinoma,0,4	MBD1	NM_001204137	exon12	c.1139_1150del	p.380_384del	.	.	108.0	15.0	169.0	0.0	.	228	.	.	Atlas-Indel,Pindel
ZNF717	100131827	hgsc.bcm.edu	hg19	3	75790811	75790812	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-2Y-A9H6-01A-11D-A38X-10	TCGA-2Y-A9H6-10A-01D-A38X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8ee12965-26aa-443a-b8de-f4a79dc3e857	b27b338e-86e5-4131-83cf-206c52b809b7	.	ZNF717	NM_001128223	exon3	c.134_135insA	p.T45fs	.	.	80.0	12.0	28.0	0.0	.	160	.	.	Atlas-INDEL