Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm EPHA8 2046 hgsc.bcm.edu hg19 1 22902961 22902961 + Silent SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . EPHA8 NM_020526 exon3 c.A411T p.T137T CAGCACACAAGAA . 219.0 98.0 212.0 0.0 . 221 . . Atlas-SNP RNPC3 55599 hgsc.bcm.edu hg19 1 104068797 104068797 + Silent SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . RNPC3 NM_017619 exon1 c.G105T p.P35P CCTGCCGGCTGAG . 144.0 64.0 170.0 0.0 . 20 . . Atlas-SNP CERS2 29956 hgsc.bcm.edu hg19 1 150941409 150941409 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 LASS2,colon,carcinoma,0,1 . NM_022075 exon2 c.G158A p.R53Q AAGTATCGAACGA . 170.0 39.0 88.0 0.0 . . . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152280892 152280892 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 FLG,NS,carcinoma,+1,2 FLG NM_002016 exon3 c.C6470T p.S2157L TCTACCGATTGCT . 209.0 76.0 139.0 0.0 . 900 . . Atlas-SNP OR6N2 81442 hgsc.bcm.edu hg19 1 158746473 158746473 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . OR6N2 NM_001005278 exon1 c.G953C p.X318S GAAAGTCAAAGAT . 87.0 29.0 35.0 0.0 . 78 . . Atlas-SNP HHIPL2 79802 hgsc.bcm.edu hg19 1 222716922 222716922 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . HHIPL2 NM_024746 exon2 c.G931A p.V311I GAGAAACCTTCAT . 100.0 44.0 110.0 0.0 . 122 . . Atlas-SNP HADHB 3032 hgsc.bcm.edu hg19 2 26501661 26501661 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . HADHB NM_000183 exon8 c.G622T p.A208S TTCCTAGCACCTG . 108.0 55.0 94.0 0.0 . 50 . . Atlas-SNP SLC8A1 6546 hgsc.bcm.edu hg19 2 40655983 40655983 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SLC8A1 NM_001252624 exon1 c.A1438T p.I480L CATCTATGATACC . 83.0 31.0 67.0 0.0 . 221 . . Atlas-SNP MSH6 2956 hgsc.bcm.edu hg19 2 48018238 48018238 + Nonsense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MSH6 NM_000179 exon2 c.A433T p.K145X GTTAGCAAAAGGC . 166.0 71.0 152.0 0.0 . 341 . . Atlas-SNP PDCL3 79031 hgsc.bcm.edu hg19 2 101186107 101186107 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PDCL3 NM_024065 exon4 c.T292A p.S98T GAGATCTCAGGGA . 194.0 85.0 140.0 0.0 . 27 . . Atlas-SNP MRPS9 64965 hgsc.bcm.edu hg19 2 105696507 105696507 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MRPS9 NM_182640 exon5 c.A476G p.Y159C CATACTATTCATT . 53.0 10.0 42.0 0.0 . 32 . . Atlas-SNP SCN7A 6332 hgsc.bcm.edu hg19 2 167262815 167262815 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SCN7A NM_002976 exon25 c.G4324T p.A1442S AAATTGCATCAAG . 389.0 162.0 202.0 0.0 . 410 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179424152 179424152 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TTN NM_001267550 exon326 c.T86707G p.S28903A TGTAGGAGAGGCG . 167.0 32.0 135.0 0.0 . 18412 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196741411 196741411 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DNAH7 NM_018897 exon37 c.A5974G p.N1992D GTTGATTTAAAAG . 76.0 31.0 43.0 0.0 . 512 . . Atlas-SNP HECW2 57520 hgsc.bcm.edu hg19 2 197185161 197185161 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . HECW2 NM_020760 exon8 c.A887G p.D296G ATTTGATCACTGC . 171.0 23.0 140.0 0.0 . 239 . . Atlas-SNP ANKRD44 91526 hgsc.bcm.edu hg19 2 197878357 197878357 + Missense_Mutation SNP C C T rs374386037 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ANKRD44 NM_001195144 exon18 c.G1802A p.R601H GCAGTGCGGCCTT . 135.0 63.0 113.0 0.0 . 281 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207171124 207171124 + Silent SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZDBF2 NM_020923 exon5 c.A1872G p.A624A TAAAGCACATCTT . 74.0 29.0 26.0 0.0 . 531 . . Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19389280 19389280 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . KCNH8 NM_144633 exon5 c.T634C p.F212L TCCAAATTCATAC . 126.0 52.0 72.0 0.0 . 189 . . Atlas-SNP MAP4 4134 hgsc.bcm.edu hg19 3 47910778 47910778 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MAP4 NM_001134364 exon14 c.C2899T p.R967X GCTTTCGGGTTGT . 129.0 58.0 106.0 0.0 . 176 . . Atlas-SNP MST1R 4486 hgsc.bcm.edu hg19 3 49933256 49933256 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MST1R NM_002447 exon12 c.G2854A p.G952R GGACCCCATCTGG . 44.0 6.0 36.0 0.0 . 205 . . Atlas-SNP RNF168 165918 hgsc.bcm.edu hg19 3 196199175 196199175 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . RNF168 NM_152617 exon6 c.T1231C p.S411P CGGGGGACACTTT . 99.0 8.0 74.0 0.0 . 49 . . Atlas-SNP ZNF732 654254 hgsc.bcm.edu hg19 4 266039 266039 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 ZNF732_ENST00000419098,NS,carcinoma,0,4 ZNF732 NM_001137608 exon3 c.G604T p.D202Y TAAAGTCTTTGCC . 117.0 24.0 81.0 0.0 . 117 . . Atlas-SNP NSG1 0 hgsc.bcm.edu hg19 4 4411339 4411339 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . NM_014392 exon4 c.T286A p.C96S CTCACCTGCGTCG . 82.0 34.0 88.0 0.0 . . . . Atlas-SNP SEL1L3 23231 hgsc.bcm.edu hg19 4 25767058 25767058 + Splice_Site SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SEL1L3 NM_015187 exon21 c.2846-1G>A . AATATGCTGCAGG . 72.0 28.0 81.0 0.0 . 62 . . Atlas-SNP CLOCK 9575 hgsc.bcm.edu hg19 4 56308736 56308736 + Silent SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CLOCK NM_004898 exon21 c.T1968G p.T656T TGTAAGAGTGCTC . 128.0 54.0 112.0 0.0 . 81 . . Atlas-SNP YTHDC1 91746 hgsc.bcm.edu hg19 4 69188594 69188594 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . YTHDC1 NM_001031732 exon11 c.T1474C p.F492L GGGGAAACAGAAG . 257.0 119.0 180.0 0.0 . 81 . . Atlas-SNP INPP4B 8821 hgsc.bcm.edu hg19 4 143226623 143226623 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . INPP4B NM_003866 exon10 c.T491C p.V164A CTCAGGACCAGCA . 345.0 149.0 291.0 0.0 . 132 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155410658 155410658 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DCHS2 NM_001142552 exon1 c.C1850T p.T617I CGGATAGTGCTGA . 175.0 31.0 129.0 0.0 . 594 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155412105 155412105 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DCHS2 NM_001142552 exon1 c.C403T p.R135W CCCGCCGCTCGCG . 434.0 253.0 263.0 0.0 . 594 . . Atlas-SNP HCN1 348980 hgsc.bcm.edu hg19 5 45695977 45695977 + Silent SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . HCN1 NM_021072 exon1 c.C219T p.G73G CTCGCCGCCGCCG . 58.0 18.0 22.0 0.0 . 298 . . Atlas-SNP ITGA1 3672 hgsc.bcm.edu hg19 5 52229759 52229759 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ITGA1 NM_181501 exon23 c.A2897G p.N966S CTGCCAATGAGAC . 517.0 191.0 379.0 0.0 . 112 . . Atlas-SNP ZSWIM6 57688 hgsc.bcm.edu hg19 5 60817126 60817126 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZSWIM6 NM_020928 exon5 c.G1370A p.C457Y CCCACTGCAAGTT . 185.0 83.0 141.0 0.0 . 51 . . Atlas-SNP SLCO4C1 353189 hgsc.bcm.edu hg19 5 101627074 101627074 + Nonsense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 SLCO4C1,NS,carcinoma,0,1 SLCO4C1 NM_180991 exon2 c.G592T p.E198X TATATTCTCCACT . 245.0 14.0 196.0 0.0 . 113 . . Atlas-SNP PKD2L2 27039 hgsc.bcm.edu hg19 5 137241951 137241951 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PKD2L2 NM_001258448 exon6 c.C803A p.S268Y TTTACTCTGTGAA . 171.0 79.0 131.0 0.0 . 68 . . Atlas-SNP PCDHA9 9752 hgsc.bcm.edu hg19 5 140228373 140228373 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PCDHA9 NM_031857 exon1 c.G293A p.R98Q GCGGGCGGAGCGC . 245.0 36.0 187.0 0.0 . 373 . . Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141335204 141335204 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PCDH12 NM_016580 exon1 c.C2213A p.S738Y CAGATGGACATGA . 94.0 36.0 86.0 0.0 . 133 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150945848 150945848 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . FAT2 NM_001447 exon1 c.A2645G p.D882G TCGCGGTCCAGGT . 202.0 99.0 151.0 0.0 . 465 . . Atlas-SNP CAGE1 285782 hgsc.bcm.edu hg19 6 7378874 7378874 + Silent SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CAGE1 NM_001170693 exon4 c.C663T p.S221S AGGTTGGCTAGGG . 212.0 96.0 189.0 0.0 . 165 . . Atlas-SNP MRS2 57380 hgsc.bcm.edu hg19 6 24403393 24403393 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MRS2 NM_020662 exon1 c.G119T p.G40V CCTGCGGCCGCCG . 44.0 12.0 41.0 0.0 . 31 . . Atlas-SNP TDP2 51567 hgsc.bcm.edu hg19 6 24651152 24651152 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TDP2 NM_016614 exon7 c.T953A p.I318K AAAAATATTCGAT . 226.0 146.0 127.0 0.0 . 29 . . Atlas-SNP SLC17A2 10246 hgsc.bcm.edu hg19 6 25917052 25917052 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SLC17A2 NM_005835 exon8 c.T791A p.V264D ATGGGGACAGCTC . 121.0 53.0 95.0 0.0 . 70 . . Atlas-SNP HIST1H4G 8369 hgsc.bcm.edu hg19 6 26247145 26247145 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . HIST1H4G NM_003547 exon1 c.A61G p.K21E GTACCTTGCGATG . 75.0 34.0 60.0 0.0 . 18 . . Atlas-SNP MRPS18B 28973 hgsc.bcm.edu hg19 6 30587275 30587275 + Silent SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MRPS18B NM_014046 exon2 c.C84T p.P28P GGTTCCCCTCCAG . 79.0 33.0 64.0 0.0 . 22 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90377748 90377748 + Silent SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MDN1 NM_014611 exon84 c.C14079A p.I4693I ATTTCCGATCTGG . 107.0 5.0 81.0 0.0 . 478 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90410473 90410473 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MDN1 NM_014611 exon56 c.G8530C p.D2844H TAATGTCTTCCTG . 175.0 69.0 123.0 0.0 . 478 . . Atlas-SNP GPRC6A 222545 hgsc.bcm.edu hg19 6 117116996 117116996 + Silent SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . GPRC6A NM_148963 exon5 c.A1551G p.Q517Q TTGAATTTGCTAT . 63.0 34.0 69.0 0.0 . 152 . . Atlas-SNP NCOA7 135112 hgsc.bcm.edu hg19 6 126210902 126210902 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NCOA7 NM_001199619 exon10 c.G1702T p.G568C CAGGCGGGTGATC . 128.0 34.0 102.0 0.0 . 92 . . Atlas-SNP DACT2 168002 hgsc.bcm.edu hg19 6 168708969 168708969 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DACT2 NM_214462 exon4 c.G1468T p.G490C GGGGACCCATTTT . 80.0 9.0 69.0 0.0 . 46 . . Atlas-SNP C7orf25 79020 hgsc.bcm.edu hg19 7 42949271 42949271 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . C7orf25 NM_001099858 exon2 c.C1403G p.P468R GGTAAGGGGGTGG . 198.0 71.0 137.0 0.0 . 36 . . Atlas-SNP SEMA3C 10512 hgsc.bcm.edu hg19 7 80378240 80378240 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SEMA3C NM_006379 exon17 c.C1816T p.Q606X CTTTCTGTAACAG . 75.0 37.0 36.0 0.0 . 106 . . Atlas-SNP RNF148 378925 hgsc.bcm.edu hg19 7 122342140 122342140 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . RNF148 NM_198085 exon1 c.C665A p.T222N CTCCTGGTGAAAG . 107.0 26.0 34.0 0.0 . 71 . . Atlas-SNP ZNF467 168544 hgsc.bcm.edu hg19 7 149463194 149463194 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF467 NM_207336 exon5 c.G397A p.A133T TGTACGCGGCAGC . 101.0 7.0 87.0 0.0 . 50 . . Atlas-SNP ADAM28 10863 hgsc.bcm.edu hg19 8 24201031 24201031 + Nonsense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ADAM28 NM_014265 exon18 c.G1924T p.E642X GACCATGAGCTCC . 58.0 42.0 57.0 0.0 . 100 . . Atlas-SNP NRG1 3084 hgsc.bcm.edu hg19 8 32616839 32616839 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NRG1 NM_013956 exon11 c.A961C p.N321H TCTAAAAACGTCA . 57.0 21.0 74.0 0.0 . 260 . . Atlas-SNP MOS 4342 hgsc.bcm.edu hg19 8 57025864 57025864 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MOS NM_005372 exon1 c.G678T p.L226F ATCTTCCAACTTC . 96.0 45.0 97.0 0.0 . 63 . . Atlas-SNP NCOA2 10499 hgsc.bcm.edu hg19 8 71037078 71037078 + Silent SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NCOA2 NM_006540 exon20 c.A3939G p.P1313P AAAGCCTGGATCA . 135.0 87.0 54.0 0.0 . 147 . . Atlas-SNP DCAF4L2 138009 hgsc.bcm.edu hg19 8 88885352 88885352 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DCAF4L2 NM_152418 exon1 c.A848T p.Q283L AGGAATTGGCCAT . 120.0 40.0 100.0 0.0 . 187 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113301671 113301671 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CSMD3 NM_198123 exon57 c.A9071G p.K3024R GAACGCTTTCCTG . 102.0 40.0 62.0 0.0 . 2325 . . Atlas-SNP CNTLN 54875 hgsc.bcm.edu hg19 9 17394651 17394651 + Silent SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CNTLN NM_017738 exon15 c.A2199G p.Q733Q GCAACAAGAAGAT . 392.0 163.0 244.0 0.0 . 128 . . Atlas-SNP SPAG8 26206 hgsc.bcm.edu hg19 9 35811469 35811469 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SPAG8 NM_001039592 exon2 c.C574T p.H192Y CAGGATGAGAGCC . 44.0 20.0 30.0 0.0 . 67 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79324435 79324435 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PRUNE2 NM_015225 exon8 c.T2755C p.W919R GGTTCCAGGAATC . 80.0 20.0 117.0 0.0 . 331 . . Atlas-SNP TLE1 7088 hgsc.bcm.edu hg19 9 84235385 84235385 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TLE1 NM_005077 exon9 c.A682G p.K228E CCACCTTCCTTTT . 97.0 5.0 105.0 0.0 . 81 . . Atlas-SNP CYLC2 1539 hgsc.bcm.edu hg19 9 105767525 105767525 + Silent SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CYLC2 NM_001340 exon5 c.A612T p.T204T GGCAACAGAATCT . 190.0 141.0 298.0 0.0 . 109 . . Atlas-SNP RBM18 92400 hgsc.bcm.edu hg19 9 125007619 125007619 + Missense_Mutation SNP C C A rs149650476 alternate_allele TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . RBM18 NM_033117 exon5 c.G329T p.R110I TCATATCTCTGAA . 22.0 13.0 31.0 0.0 . 15 . C|1.000;T|0.000 Atlas-SNP NEK6 10783 hgsc.bcm.edu hg19 9 127089633 127089633 + Silent SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NEK6 NM_001166171 exon8 c.C633T p.N211N TGCCAACGTGTTC . 28.0 24.0 59.0 0.0 . 47 . . Atlas-SNP TYSND1 219743 hgsc.bcm.edu hg19 10 71905794 71905794 + Silent SNP G G C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TYSND1 NM_173555 exon1 c.C549G p.G183G AAACCAGCCCAGC . 118.0 54.0 112.0 0.0 . 20 . . Atlas-SNP INPP5F 22876 hgsc.bcm.edu hg19 10 121571371 121571371 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . INPP5F NM_014937 exon15 c.A1790C p.E597A ACCAGGAACTAAT . 91.0 25.0 89.0 0.0 . 112 . . Atlas-SNP OR4C3 256144 hgsc.bcm.edu hg19 11 48346805 48346805 + Nonsense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . OR4C3 NM_001004702 exon1 c.A313T p.K105X GCTCCTAAACTCA . 105.0 7.0 72.0 0.0 . 75 . . Atlas-SNP DDB1 1642 hgsc.bcm.edu hg19 11 61097043 61097043 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DDB1 NM_001923 exon4 c.G341T p.R114L GAGGGGCGGCCAA . 107.0 54.0 71.0 0.0 . 100 . . Atlas-SNP PRSS23 11098 hgsc.bcm.edu hg19 11 86519158 86519158 + Missense_Mutation SNP C C T rs200816081 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PRSS23 NM_007173 exon2 c.C473T p.T158M TATCCACGGGCTG . 187.0 72.0 170.0 0.0 . 49 . C|0.999;T|0.001 Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92531256 92531256 + Missense_Mutation SNP A A C rs71473491 bycluster;alternate_allele TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . FAT3 NM_001008781 exon9 c.A5077C p.I1693L ATTCTAATCTCTG . 145.0 61.0 107.0 0.0 . 1822 . A|0.500;G|0.500 Atlas-SNP TAF1D 79101 hgsc.bcm.edu hg19 11 93471289 93471289 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TAF1D NM_024116 exon3 c.A445G p.I149V TTAAAATTTTTCT . 86.0 34.0 75.0 0.0 . 18 . . Atlas-SNP PDZD3 79849 hgsc.bcm.edu hg19 11 119059807 119059807 + Silent SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PDZD3 NM_001168468 exon10 c.C1381T p.L461L AATGACCTGGAGA . 37.0 16.0 31.0 0.0 . 42 . . Atlas-SNP CLEC1B 51266 hgsc.bcm.edu hg19 12 10149501 10149501 + Missense_Mutation SNP G G C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 CLEC1B_ENST00000398939,bladder,carcinoma,0,2 CLEC1B NM_016509 exon4 c.C382G p.Q128E AGTACTGCTTACT . 68.0 21.0 60.0 0.0 . 39 . . Atlas-SNP H2AFJ 55766 hgsc.bcm.edu hg19 12 14927760 14927760 + Missense_Mutation SNP A A G rs371368734 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . H2AFJ NM_177925 exon1 c.A356G p.K119R TGCCCAAGAAGAC . 160.0 76.0 159.0 0.0 . 14 . . Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43846185 43846185 + Silent SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ADAMTS20 NM_025003 exon14 c.T1971C p.Y657Y CTGACAATAGAGT . 125.0 47.0 68.0 0.0 . 635 . . Atlas-SNP PUS7L 83448 hgsc.bcm.edu hg19 12 44148379 44148379 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . PUS7L NM_001098614 exon2 c.G670T p.A224S TCTTTGCATCCAA . 216.0 17.0 149.0 0.0 . 73 . . Atlas-SNP POLR3B 55703 hgsc.bcm.edu hg19 12 106903268 106903268 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . POLR3B NM_018082 exon28 c.C3343G p.Q1115E CTCTTCCAGGAAC . 98.0 40.0 82.0 0.0 . 123 . . Atlas-SNP RHOF 54509 hgsc.bcm.edu hg19 12 122218862 122218862 + Silent SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . RHOF NM_019034 exon4 c.C387T p.I129I GCAGCCGATGAGC . 116.0 45.0 119.0 0.0 . 6 . . Atlas-SNP AACS 65985 hgsc.bcm.edu hg19 12 125621327 125621327 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . AACS NM_023928 exon17 c.G1798T p.V600F GACTTGGTTAAGA . 97.0 43.0 76.0 0.0 . 59 . . Atlas-SNP ZNF10 7556 hgsc.bcm.edu hg19 12 133728487 133728487 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF10 NM_015394 exon4 c.C253T p.P85S ACCCATCCTGGTG . 74.0 36.0 91.0 0.0 . 58 . . Atlas-SNP CCDC168 643677 hgsc.bcm.edu hg19 13 103398055 103398055 + Silent SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . NM_001146197 exon4 c.A4992G p.E1664E AGCCTGTTCCTTT . 143.0 51.0 75.0 0.0 . . . . Atlas-SNP SOX1 6656 hgsc.bcm.edu hg19 13 112723111 112723111 + Missense_Mutation SNP C C T rs199891204 bycluster TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 SOX1,spinal_cord,glioma,0,1 SOX1 NM_005986 exon1 c.C1139T p.A380V CGGGCGCGGGCGT . 10.0 4.0 21.0 0.0 . 14 . . Atlas-SNP CDKN3 1033 hgsc.bcm.edu hg19 14 54866651 54866651 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CDKN3 NM_005192 exon2 c.G49A p.E17K TCAGATGAAGAGC . 370.0 157.0 356.0 1.0 . 9 . . Atlas-SNP MKRN3 7681 hgsc.bcm.edu hg19 15 23812175 23812175 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MKRN3 NM_005664 exon1 c.T1246C p.C416R GACACATGCTTTT . 105.0 43.0 110.0 0.0 . 155 . . Atlas-SNP USP8 9101 hgsc.bcm.edu hg19 15 50789394 50789394 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . USP8 NM_001128610 exon18 c.A3004C p.K1002Q ATCTGGAAGTTAC . 114.0 27.0 98.0 0.0 . 90 . . Atlas-SNP MEGF11 84465 hgsc.bcm.edu hg19 15 66274611 66274611 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MEGF11 NM_032445 exon6 c.T610A p.C204S AGAGGCACTCGCC . 55.0 19.0 60.0 0.0 . 70 . . Atlas-SNP SMAD3 4088 hgsc.bcm.edu hg19 15 67457388 67457388 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SMAD3 NM_005902 exon2 c.G362T p.C121F AGGTCTGCGTGAA . 53.0 18.0 57.0 0.0 . 119 . . Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72231259 72231259 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MYO9A NM_006901 exon16 c.G2312A p.R771Q TTTTTCCGGGTTA . 77.0 26.0 36.0 0.0 . 203 . . Atlas-SNP TICRR 90381 hgsc.bcm.edu hg19 15 90168109 90168109 + Missense_Mutation SNP G G A rs149974689 bycluster TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . NM_152259 exon20 c.G4568A p.R1523H CTTCCCGTGACGT . 111.0 54.0 85.0 0.0 . . . G|1.000;A|0.000 Atlas-SNP C15orf32 145858 hgsc.bcm.edu hg19 15 93015518 93015518 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . C15orf32 NM_153040 exon1 c.C140T p.A47V TCTCGGCGAGGCC . 192.0 91.0 188.0 0.0 . 22 . . Atlas-SNP GPR139 124274 hgsc.bcm.edu hg19 16 20043728 20043728 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . GPR139 NM_001002911 exon2 c.T391C p.C131R GGTGGCAGACAGC . 149.0 73.0 114.0 0.0 . 75 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 65026819 65026819 + Silent SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CDH11 NM_001797 exon5 c.A642G p.T214T AGTACCTGTCTGT . 55.0 24.0 27.0 0.0 . 260 . . Atlas-SNP SLC52A1 55065 hgsc.bcm.edu hg19 17 4937150 4937150 + Missense_Mutation SNP G G A rs370188723 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . NM_017986 exon3 c.C634T p.R212W GACCCCGGAAGGC . 77.0 55.0 126.0 0.0 . . . . Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8140795 8140795 + Silent SNP T T G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . CTC1 NM_025099 exon5 c.A690C p.L230L TCGAACTAGACTC . 53.0 36.0 100.0 0.0 . 75 . . Atlas-SNP TLK2 11011 hgsc.bcm.edu hg19 17 60685417 60685417 + Nonsense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . TLK2 NM_006852 exon21 c.C1987T p.Q663X CATAACCAGTCTC . 338.0 95.0 229.0 0.0 . 223 . . Atlas-SNP MARCH10 162333 hgsc.bcm.edu hg19 17 60814012 60814012 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MARCH10 NM_001100875 exon6 c.A1217T p.K406I TCGGATTTGGTGT . 130.0 76.0 80.0 0.0 . 102 . . Atlas-SNP MFSD11 79157 hgsc.bcm.edu hg19 17 74772613 74772613 + Missense_Mutation SNP A A T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 MFSD11,NS,lymphoid_neoplasm,0,1 MFSD11 NM_001242532 exon12 c.A1175T p.K392M TCTTCAAGTTTGT . 60.0 36.0 46.0 0.0 . 47 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80044945 80044945 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . FASN NM_004104 exon21 c.G3408T p.E1136D CAGCTCCTCCTGC . 176.0 51.0 115.0 0.0 . 154 . . Atlas-SNP SOGA2 23255 hgsc.bcm.edu hg19 18 8777845 8777845 + Silent SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . NM_015210 exon5 c.A372G p.R124R AAAAAGAAGAAGC . 100.0 34.0 99.0 0.0 . . . . Atlas-SNP NOL4 8715 hgsc.bcm.edu hg19 18 31599308 31599308 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 NOL4,colon,carcinoma,0,1 NOL4 NM_003787 exon6 c.C1030T p.R344X CCTCTCGTTCCAT . 69.0 27.0 42.0 0.0 . 139 . . Atlas-SNP ABCA7 10347 hgsc.bcm.edu hg19 19 1046943 1046943 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ABCA7 NM_019112 exon14 c.G1765A p.A589T AGCCGCGCGGTGC . 89.0 44.0 66.0 0.0 . 174 . . Atlas-SNP SBNO2 22904 hgsc.bcm.edu hg19 19 1116910 1116910 + Silent SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SBNO2 NM_014963 exon16 c.C1720T p.L574L ACTGCAGCCCGAT . 26.0 7.0 19.0 0.0 . 112 . . Atlas-SNP ZNF799 90576 hgsc.bcm.edu hg19 19 12502454 12502454 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF799 NM_001080821 exon4 c.A758G p.Y253C CATTCATACAGTT . 113.0 50.0 54.0 0.0 . 111 . . Atlas-SNP ZNF91 7644 hgsc.bcm.edu hg19 19 23543878 23543878 + Missense_Mutation SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF91 NM_003430 exon4 c.T1903C p.C635R TGCCACATTCTTC . 164.0 77.0 112.0 0.0 . 349 . . Atlas-SNP LSR 51599 hgsc.bcm.edu hg19 19 35758051 35758051 + Missense_Mutation SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . LSR NM_205834 exon9 c.G1328T p.R443L ACTGGCGATCTCG . 147.0 67.0 178.0 0.0 . 60 . . Atlas-SNP ZNF780B 163131 hgsc.bcm.edu hg19 19 40540678 40540678 + Silent SNP G G C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF780B NM_001005851 exon5 c.C2088G p.P696P TACAAAGGGTTTC . 124.0 52.0 84.0 0.0 . 143 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53057402 53057402 + Silent SNP A A G rs375755660 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF808 NM_001039886 exon5 c.A1233G p.Q411Q TCATCAATCAAGC . 122.0 61.0 115.0 0.0 . 81 . . Atlas-SNP DPRX 503834 hgsc.bcm.edu hg19 19 54140215 54140215 + Silent SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DPRX NM_001012728 exon3 c.T549C p.C183C TGCCTGTTCATCT . 107.0 44.0 95.0 0.0 . 34 . . Atlas-SNP NLRP12 91662 hgsc.bcm.edu hg19 19 54314219 54314219 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NLRP12 NM_144687 exon3 c.G694T p.A232S AGTCCAGCATCAC . 76.0 18.0 79.0 0.0 . 236 . . Atlas-SNP SIRPD 128646 hgsc.bcm.edu hg19 20 1515074 1515074 + Missense_Mutation SNP T T G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . SIRPD NM_178460 exon4 c.A591C p.K197N GGATTATTTTGAC . 62.0 27.0 47.0 0.0 . 34 . . Atlas-SNP NAA20 51126 hgsc.bcm.edu hg19 20 20013187 20013187 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . NAA20 NM_016100 exon5 c.T341C p.V114A TAAGAGTATCTAA . 154.0 7.0 94.0 0.0 . 15 . . Atlas-SNP WFDC6 140870 hgsc.bcm.edu hg19 20 44168001 44168001 + Silent SNP A A G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . WFDC6 NM_080827 exon1 c.T46C p.L16L CCCCCAAAAGGAT . 139.0 53.0 87.0 0.0 . 13 . . Atlas-SNP WFDC6 140870 hgsc.bcm.edu hg19 20 44168025 44168025 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . WFDC6 NM_080827 exon1 c.C22T p.P8S GGATTGGCAGAAG . 142.0 54.0 92.0 0.0 . 13 . . Atlas-SNP ZNF334 55713 hgsc.bcm.edu hg19 20 45131451 45131451 + Missense_Mutation SNP A A C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF334 NM_018102 exon5 c.T527G p.L176W ATTCCCAAATGAC . 97.0 40.0 63.0 0.0 . 101 . . Atlas-SNP ZNF831 128611 hgsc.bcm.edu hg19 20 57766716 57766716 + Silent SNP G G T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZNF831 NM_178457 exon1 c.G642T p.L214L CCTCCTGGAGGAA . 100.0 41.0 69.0 0.0 . 287 . . Atlas-SNP MCM3AP 8888 hgsc.bcm.edu hg19 21 47656824 47656824 + Silent SNP G G C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MCM3AP NM_003906 exon27 c.C5703G p.P1901P ATAGAGGGGAAGG . 66.0 30.0 69.0 0.0 . 146 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26243585 26243585 + Silent SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MYO18B NM_032608 exon20 c.C3741T p.F1247F TGGGTTCCACATC . 59.0 24.0 56.0 0.0 . 322 . . Atlas-SNP OSM 5008 hgsc.bcm.edu hg19 22 30659920 30659920 + Silent SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . OSM NM_020530 exon3 c.C711T p.P237P CCTGGAGGGTCTG . 41.0 20.0 46.0 0.0 . 23 . . Atlas-SNP FAM47A 158724 hgsc.bcm.edu hg19 X 34148402 34148402 + Missense_Mutation SNP T T A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . FAM47A NM_203408 exon1 c.A1994T p.E665V TTGTCCTCATCCT . 79.0 68.0 73.0 0.0 . 249 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107869539 107869539 + Missense_Mutation SNP G G T rs281874712 TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . COL4A5 NM_000495 exon36 c.G3206T p.G1069V ATCCTGGTATTTC . 71.0 16.0 42.0 0.0 . 262 . . Atlas-SNP DCAF12L2 340578 hgsc.bcm.edu hg19 X 125299403 125299403 + Missense_Mutation SNP C C T novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . DCAF12L2 NM_001013628 exon1 c.G505A p.E169K GGTTTTCGCCGCC . 101.0 81.0 99.0 0.0 . 157 . . Atlas-SNP VGLL1 51442 hgsc.bcm.edu hg19 X 135631014 135631014 + Missense_Mutation SNP C C G novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . VGLL1 NM_016267 exon3 c.C481G p.P161A CCCCAGCCTGATG . 84.0 7.0 59.0 0.0 . 41 . . Atlas-SNP MAGEC2 51438 hgsc.bcm.edu hg19 X 141290940 141290940 + Missense_Mutation SNP C C A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . MAGEC2 NM_016249 exon3 c.G834T p.W278C CTGCACCCAAACT . 50.0 25.0 47.0 0.0 . 102 . . Atlas-SNP F8 2157 hgsc.bcm.edu hg19 X 154194337 154194337 + Missense_Mutation SNP T T C novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . F8 NM_000132 exon9 c.A1351G p.T451A CATCTGTGTATGC . 76.0 66.0 50.0 0.0 . 646 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 6037 6037 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . ENST00000361624 exon1 c.G134A p.G45D AGCCAGGCAACCT . 75.0 7.0 26.0 0.0 . . . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7896 7896 + Nonsense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . ENST00000361739 exon1 c.G311A p.W104X ACCAATGGTACTG . 45.0 14.0 20.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13633 13633 + Missense_Mutation SNP G G A novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . . ENST00000361567 exon1 c.G1297A p.G433S CTAACAGGTCAAC . 38.0 10.0 16.0 0.0 . . . . Atlas-SNP USP8 9101 hgsc.bcm.edu hg19 15 50789399 50789401 + In_Frame_Del DEL ACC ACC - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 ACC ACC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . USP8 NM_001128610 exon18 c.3008_3010del p.1003_1004del . . 110.0 29.0 95.0 0.0 . 90 . . Atlas-Indel,Pindel EFNB2 1948 hgsc.bcm.edu hg19 13 107187266 107187266 + Frame_Shift_Del DEL A A - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . EFNB2 NM_004093 exon1 c.48delG p.L16fs . . 111.0 51.0 97.0 0.0 . 39 . . Atlas-Indel,Pindel ZBTB9 221504 hgsc.bcm.edu hg19 6 33424037 33424038 + Frame_Shift_Del DEL TG TG - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . ZBTB9 NM_152735 exon2 c.1159_1160del p.387_387del . . 104.0 37.0 106.0 0.0 . 23 . . Atlas-Indel,Pindel BAI1 575 hgsc.bcm.edu hg19 8 143546087 143546087 + Frame_Shift_Del DEL G G - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . BAI1 NM_001702 exon1 c.527delT p.V176fs . . 62.0 23.0 47.0 0.0 . 146 . . Atlas-Indel,Pindel KRTAP21-2 337978 hgsc.bcm.edu hg19 21 32119370 32119393 + In_Frame_Del DEL AGCCATAGCCACAGCCAGTTCCAT AGCCATAGCCACAGCCAGTTCCAT - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 AGCCATAGCCACAGCCAGTTCCAT AGCCATAGCCACAGCCAGTTCCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . KRTAP21-2 NM_181617 exon1 c.129_152del p.43_51del . . 67.0 26.0 62.0 0.0 . 16 . . Atlas-INDEL GSPT1 2935 hgsc.bcm.edu hg19 16 11991733 11991750 + Frame_Shift_Del DEL TTGAACCTAGACAAGAGA TTGAACCTAGACAAGAGA - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 TTGAACCTAGACAAGAGA TTGAACCTAGACAAGAGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . GSPT1 NM_001130006 exon3 c.395_401del p.132_134del . . 195.0 41.0 180.0 0.0 . 71 . . Atlas-Indel,Pindel OR11H6 122748 hgsc.bcm.edu hg19 14 20692318 20692318 + Frame_Shift_Del DEL C C - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . OR11H6 NM_001004480 exon1 c.449delA p.Y150fs . . 80.0 35.0 48.0 0.0 . 60 . . Atlas-Indel,Pindel UPF3B 65109 hgsc.bcm.edu hg19 X 118975169 118975172 + Frame_Shift_Del DEL TTTC TTTC - novel TCGA-2Y-A9H9-01A-21D-A38X-10 TCGA-2Y-A9H9-10A-01D-A38X-10 TTTC TTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c5586a43-bdc1-4030-93f8-cfb7bfa6a4b1 5ab2f233-e5fe-41df-9cef-56c0fdd900d3 . UPF3B NM_023010 exon7 c.675_678del p.225_226del . . 80.0 64.0 39.0 0.0 . 74 . . Atlas-Indel,Pindel