Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27023908	27023908	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.,1	ARID1A	NM_006015	exon1	c.G1014A	p.G338G	TTGGGGGGCTGCG	.	11.0	5.0	10.0	0.0	.	842	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34089022	34089022	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CSMD2	NM_052896	exon36	c.G5550A	p.L1850L	TACTTCCAGCGAG	.	121.0	43.0	117.0	0.0	.	946	.	.	Atlas-SNP
NRD1	4898	hgsc.bcm.edu	hg19	1	52303276	52303276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NRD1	NM_002525	exon3	c.T647G	p.F216C	AGCAAAAACAGGC	.	90.0	33.0	59.0	0.0	.	89	.	.	Atlas-SNP
WDR78	79819	hgsc.bcm.edu	hg19	1	67371059	67371059	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	WDR78	NM_024763	exon3	c.171-1G>A	.	TTGTTCCTATATA	.	62.0	26.0	77.0	0.0	.	102	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103491838	103491838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	COL11A1	NM_001854	exon6	c.G831T	p.E277D	TTTATACTCTGCT	.	116.0	35.0	124.0	0.0	.	972	.	.	Atlas-SNP
MAGI3	260425	hgsc.bcm.edu	hg19	1	114225757	114225757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	MAGI3	NM_001142782	exon21	c.A3567C	p.K1189N	CCAGAAAAATGTG	.	229.0	85.0	192.0	0.0	.	181	.	.	Atlas-SNP
S100A7A	338324	hgsc.bcm.edu	hg19	1	153390690	153390690	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	S100A7A,NS,carcinoma,0,1	S100A7A	NM_176823	exon2	c.C132T	p.L44L	TTTCCTCAGTGCC	.	144.0	14.0	76.0	1.0	.	24	.	.	Atlas-SNP
TNR	7143	hgsc.bcm.edu	hg19	1	175365900	175365900	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TNR	NM_003285	exon5	c.G1020C	p.R340S	AATGGACCTGTCG	.	62.0	40.0	97.0	0.0	.	399	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179631330	179631330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TDRD5	NM_001199085	exon15	c.T2414C	p.M805T	CTAAGATGGGAAA	.	88.0	27.0	83.0	0.0	.	149	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186050420	186050420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	HMCN1	NM_031935	exon56	c.G8681A	p.C2894Y	TAGAGTGTTTATC	.	56.0	33.0	83.0	0.0	.	797	.	.	Atlas-SNP
FLVCR1	28982	hgsc.bcm.edu	hg19	1	213068556	213068556	+	Splice_Site	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FLVCR1	NM_014053	exon10	c.1594-2A>G	.	TTTTATAGATACC	.	279.0	75.0	174.0	0.0	.	31	.	.	Atlas-SNP
NUP133	55746	hgsc.bcm.edu	hg19	1	229631723	229631723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NUP133	NM_018230	exon7	c.G891A	p.W297X	TAATTCCCATTTA	.	49.0	26.0	28.0	0.0	.	111	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25469632	25469632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	DNMT3A	NM_175629	exon10	c.G1136A	p.R379H	CCCGCGCGGCTGC	.	52.0	5.0	59.0	0.0	.	1807	.	.	Atlas-SNP
DNMT3A	1788	hgsc.bcm.edu	hg19	2	25497874	25497874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	DNMT3A,colon,carcinoma,0,1	DNMT3A	NM_175629	exon6	c.C575A	p.A192E	TCCCCCGCCTGGA	.	118.0	40.0	137.0	0.0	.	1807	.	.	Atlas-SNP
EFEMP1	2202	hgsc.bcm.edu	hg19	2	56103824	56103824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	EFEMP1	NM_001039349	exon7	c.C814T	p.L272F	AACCAAGAATGTT	.	416.0	149.0	280.0	0.0	.	81	.	.	Atlas-SNP
ELMOD3	84173	hgsc.bcm.edu	hg19	2	85604561	85604561	+	Silent	SNP	G	G	A	rs371072018		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ELMOD3	NM_001135022	exon11	c.G702A	p.A234A	GATGGCGCAGGAG	.	39.0	9.0	43.0	0.0	.	53	.	.	Atlas-SNP
RNF103	7844	hgsc.bcm.edu	hg19	2	86849812	86849812	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.,1	RNF103	NM_005667	exon1	c.G198A	p.K66K	GACATCCTTCTTC	.	164.0	73.0	152.0	0.0	.	58	.	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	hg19	2	163291972	163291972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	KCNH7	NM_033272	exon8	c.C1690A	p.H564N	GCCAGTGAGCAAT	.	145.0	58.0	120.0	0.0	.	378	.	.	Atlas-SNP
KCNH7	90134	hgsc.bcm.edu	hg19	2	163291973	163291973	+	Silent	SNP	A	A	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	KCNH7	NM_033272	exon8	c.T1689A	p.A563A	CCAGTGAGCAATC	.	140.0	56.0	119.0	0.0	.	378	.	.	Atlas-SNP
PDE11A	50940	hgsc.bcm.edu	hg19	2	178562092	178562092	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PDE11A	NM_016953	exon15	c.A2313C	p.S771S	CAATATTGACTGC	.	61.0	27.0	49.0	0.0	.	283	.	.	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196709853	196709853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	DNAH7	NM_018897	exon47	c.A8818G	p.R2940G	TATCTCTTCCTTT	.	111.0	39.0	109.0	0.0	.	512	.	.	Atlas-SNP
FAM117B	150864	hgsc.bcm.edu	hg19	2	203630440	203630440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	FAM117B_ENST00000392238,colon,carcinoma,0,2	FAM117B	NM_173511	exon8	c.G1723A	p.A575T	CCATCAGCTTCTC	.	122.0	52.0	95.0	0.0	.	73	.	.	Atlas-SNP
OBSL1	23363	hgsc.bcm.edu	hg19	2	220427162	220427162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	OBSL1	NM_001173431	exon8	c.T2915C	p.I972T	TCGTCAATTTCAC	.	72.0	25.0	103.0	0.0	.	120	.	.	Atlas-SNP
FAM124B	79843	hgsc.bcm.edu	hg19	2	225244883	225244883	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FAM124B	NM_001122779	exon2	c.G775T	p.G259X	CAGCTCCCAAGAT	.	94.0	37.0	101.0	0.0	.	71	.	.	Atlas-SNP
C3orf35	339883	hgsc.bcm.edu	hg19	3	37476365	37476365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	C3orf35	NM_178339	exon6	c.G257T	p.G86V	GGGAGGGGACTGA	.	268.0	115.0	228.0	0.0	.	21	.	.	Atlas-SNP
SLC25A38	54977	hgsc.bcm.edu	hg19	3	39433406	39433406	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SLC25A38	NM_017875	exon5	c.G519T	p.G173G	TGAGGGGCACCGG	.	124.0	52.0	108.0	0.0	.	25	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	bycluster	TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	CTNNB1,gallbladder,other,+1,98	CTNNB1	NM_001098209	exon3	c.C122T	p.T41I	CCACTACCACAGC	.	141.0	56.0	94.0	0.0	.	4904	.	.	Atlas-SNP
MAP4	4134	hgsc.bcm.edu	hg19	3	47957487	47957487	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	MAP4	NM_001134364	exon7	c.G1830T	p.L610L	ATCCTGCAGAGAT	.	47.0	18.0	31.0	0.0	.	176	.	.	Atlas-SNP
CD47	961	hgsc.bcm.edu	hg19	3	107798844	107798844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CD47	NM_198793	exon2	c.C394T	p.R132C	CAACACGATATTT	.	117.0	36.0	80.0	0.0	.	37	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113377134	113377134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	KIAA2018	NM_001009899	exon7	c.T3395C	p.I1132T	GCTACTATATCAG	.	92.0	29.0	57.0	0.0	.	180	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140123535	140123535	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CLSTN2	NM_022131	exon4	c.C564A	p.C188X	GGACTGCTCCCCA	.	136.0	54.0	131.0	0.0	.	190	.	.	Atlas-SNP
TNFSF10	8743	hgsc.bcm.edu	hg19	3	172241126	172241126	+	Missense_Mutation	SNP	C	C	T	rs11545817		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TNFSF10	NM_001190943	exon1	c.G49A	p.V17M	TCAGCACGCAGGT	.	108.0	36.0	99.0	0.0	.	30	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5630306	5630306	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	EVC2	NM_147127	exon12	c.C1866G	p.H622Q	AATGAGGTGAGTC	.	68.0	19.0	82.0	0.0	.	202	.	.	Atlas-SNP
LPHN3	23284	hgsc.bcm.edu	hg19	4	62903534	62903534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	LPHN3_ENST00000514591,NS,carcinoma,0,3	LPHN3	NM_015236	exon21	c.C3473A	p.S1158Y	AAACATCTGGTTC	.	183.0	11.0	141.0	0.0	.	800	.	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72423536	72423536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SLC4A4	NM_001098484	exon22	c.G2871T	p.Q957H	CCTGCAGGTGTTG	.	105.0	40.0	60.0	0.0	.	269	.	.	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	hg19	4	94145811	94145811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	GRID2	NM_001510	exon7	c.C1010A	p.A337D	CTAATGCTTTTCA	.	106.0	40.0	95.0	0.0	.	233	.	.	Atlas-SNP
LRIT3	345193	hgsc.bcm.edu	hg19	4	110772897	110772897	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	LRIT3	NM_198506	exon2	c.T354A	p.A118A	TCTGGCTGCTTTC	.	93.0	9.0	73.0	0.0	.	107	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3601148	3601148	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	IRX1	NM_024337	exon4	c.C1437A	p.S479S	CCCGTCCGCCTGA	.	141.0	37.0	159.0	0.0	.	106	.	.	Atlas-SNP
RAB3C	115827	hgsc.bcm.edu	hg19	5	57913469	57913469	+	Splice_Site	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	RAB3C	NM_138453	exon2	c.25-1G>A	.	ATCACAGATGGCC	.	218.0	96.0	118.0	0.0	.	47	.	.	Atlas-SNP
PCDHB1	29930	hgsc.bcm.edu	hg19	5	140432309	140432309	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PCDHB1	NM_013340	exon1	c.T1254C	p.Y418Y	AGGCTATAATATC	.	147.0	51.0	121.0	0.0	.	148	.	.	Atlas-SNP
SPINK5	11005	hgsc.bcm.edu	hg19	5	147505382	147505382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SPINK5	NM_001127698	exon30	c.A2926G	p.T976A	TTCTATACAAACA	.	161.0	77.0	111.0	0.0	.	245	.	.	Atlas-SNP
NMUR2	56923	hgsc.bcm.edu	hg19	5	151771871	151771871	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NMUR2	NM_020167	exon4	c.G1129C	p.D377H	CTATATCTTCGGT	.	172.0	79.0	109.0	0.0	.	111	.	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161324165	161324165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	GABRA1	NM_001127643	exon11	c.C1108A	p.P370T	TACGCTCCAACAG	.	234.0	116.0	181.0	0.0	.	132	.	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161324166	161324166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	GABRA1	NM_001127643	exon11	c.C1109A	p.P370Q	ACGCTCCAACAGC	.	238.0	116.0	184.0	0.0	.	132	.	.	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	hg19	5	178310514	178310514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ZNF354B	NM_058230	exon5	c.A1061G	p.Y354C	AGTCCTACTTATG	.	347.0	152.0	241.0	1.0	.	67	.	.	Atlas-SNP
PXDC1	221749	hgsc.bcm.edu	hg19	6	3751739	3751739	+	Silent	SNP	C	C	A	rs369797402	alternate_allele	TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	.	NM_183373	exon1	c.G27T	p.T9T	GAGCGACGTGCCC	.	108.0	43.0	126.0	0.0	.	.	.	.	Atlas-SNP
BMP6	654	hgsc.bcm.edu	hg19	6	7845445	7845445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	BMP6	NM_001718	exon2	c.C737T	p.P246L	AGATTCCTGAGGG	.	189.0	8.0	130.0	0.0	.	67	.	.	Atlas-SNP
EEF1E1	9521	hgsc.bcm.edu	hg19	6	8090503	8090503	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	EEF1E1	NM_001135650	exon3	c.A300G	p.S100S	AAGATATGAATTA	.	222.0	92.0	145.0	0.0	.	11	.	.	Atlas-SNP
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32166815	32166815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NOTCH4	NM_004557	exon24	c.C4423T	p.R1475C	CTCGGCGTCGACG	.	178.0	68.0	168.0	0.0	.	201	.	.	Atlas-SNP
TBCC	6903	hgsc.bcm.edu	hg19	6	42713787	42713787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TBCC	NM_003192	exon1	c.G25T	p.A9S	CAGCAGCAGCGGA	.	85.0	20.0	108.0	0.0	.	31	.	.	Atlas-SNP
HSP90AB1	3326	hgsc.bcm.edu	hg19	6	44218166	44218166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	HSP90AB1	NM_007355	exon6	c.A787G	p.K263E	AGCGGTAAGGATA	.	255.0	84.0	263.0	0.0	.	83	.	.	Atlas-SNP
TDRD6	221400	hgsc.bcm.edu	hg19	6	46656123	46656123	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TDRD6	NM_001168359	exon1	c.G258T	p.V86V	CCGCGTGGTCAGC	.	76.0	30.0	54.0	0.0	.	205	.	.	Atlas-SNP
DEFB113	245927	hgsc.bcm.edu	hg19	6	49936539	49936539	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	DEFB113	NM_001037729	exon2	c.G100T	p.E34X	GACATTCTCTTTT	.	88.0	34.0	39.0	0.0	.	18	.	.	Atlas-SNP
AKD1	221264	hgsc.bcm.edu	hg19	6	109867191	109867191	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	AKD1	NM_001145128	exon26	c.A3104T	p.E1035V	TTCTTTTCAGTTT	.	259.0	122.0	171.0	0.0	.	223	.	.	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117113979	117113979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	GPRC6A	NM_148963	exon6	c.A2107G	p.R703G	TCGGTCTATAGAG	.	225.0	119.0	120.0	0.0	.	152	.	.	Atlas-SNP
MAD1L1	8379	hgsc.bcm.edu	hg19	7	1997344	1997344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	MAD1L1	NM_003550	exon16	c.G1516A	p.E506K	GCTCCTCGACCTT	.	95.0	40.0	132.0	0.0	.	81	.	.	Atlas-SNP
NFE2L3	9603	hgsc.bcm.edu	hg19	7	26224374	26224374	+	Silent	SNP	T	T	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NFE2L3	NM_004289	exon4	c.T1056G	p.P352P	CAATCCTGAGCAA	.	230.0	104.0	164.0	0.0	.	77	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82764194	82764194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PCLO	NM_014510	exon3	c.C2672A	p.T891K	TGAGGTGTGGGGA	.	134.0	54.0	126.0	0.0	.	1506	.	.	Atlas-SNP
STEAP2	261729	hgsc.bcm.edu	hg19	7	89856657	89856657	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	STEAP2	NM_001244946	exon4	c.A865T	p.R289W	AAGTATAGGAGAT	.	154.0	56.0	107.0	0.0	.	78	.	.	Atlas-SNP
PEX1	5189	hgsc.bcm.edu	hg19	7	92134134	92134134	+	Silent	SNP	C	C	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PEX1	NM_000466	exon12	c.G1983C	p.L661L	GTCATCCAGCAGG	.	65.0	27.0	66.0	0.0	.	102	.	.	Atlas-SNP
ZNF394	84124	hgsc.bcm.edu	hg19	7	99096409	99096409	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ZNF394	NM_032164	exon2	c.C513T	p.R171R	GTCCAGGCGCTCC	.	86.0	38.0	76.0	0.0	.	48	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103363632	103363632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	RELN	NM_173054	exon8	c.A760G	p.T254A	GGCCTGTGGTAAT	.	218.0	68.0	208.0	0.0	.	593	.	.	Atlas-SNP
HBP1	26959	hgsc.bcm.edu	hg19	7	106822886	106822886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	HBP1	NM_001244262	exon3	c.G268A	p.D90N	AGTTCAGATGTTT	.	118.0	12.0	113.0	0.0	.	31	.	.	Atlas-SNP
LMOD2	442721	hgsc.bcm.edu	hg19	7	123302963	123302963	+	Silent	SNP	T	T	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	LMOD2_ENST00000458573,NS,carcinoma,0,1	LMOD2	NM_207163	exon2	c.T1323A	p.P441P	ACCACCTCCTCCT	.	77.0	4.0	73.0	0.0	.	62	.	.	Atlas-SNP
TMEM229A	730130	hgsc.bcm.edu	hg19	7	123672479	123672479	+	Silent	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TMEM229A	NM_001136002	exon1	c.G579A	p.Q193Q	CTGCTGCTGCTGT	.	52.0	5.0	50.0	0.0	.	31	.	.	Atlas-SNP
TMEM229A	730130	hgsc.bcm.edu	hg19	7	123672485	123672485	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TMEM229A	NM_001136002	exon1	c.A573G	p.Q191Q	CTGCTGTTGCTGC	.	54.0	5.0	52.0	0.0	.	31	.	.	Atlas-SNP
ZYX	7791	hgsc.bcm.edu	hg19	7	143080168	143080168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ZYX	NM_003461	exon5	c.C776A	p.S259Y	CCTCATCTCCGGC	.	125.0	70.0	164.0	0.0	.	46	.	.	Atlas-SNP
ADAM28	10863	hgsc.bcm.edu	hg19	8	24181394	24181394	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ADAM28	NM_014265	exon9	c.C768A	p.I256I	GGAAATCTGGACT	.	88.0	8.0	86.0	0.0	.	100	.	.	Atlas-SNP
IMPA1	3612	hgsc.bcm.edu	hg19	8	82583199	82583199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	IMPA1	NM_001144878	exon8	c.A718C	p.K240Q	AAAGCTTTTCCAT	.	513.0	95.0	263.0	0.0	.	46	.	.	Atlas-SNP
SPAG1	6674	hgsc.bcm.edu	hg19	8	101206459	101206459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SPAG1	NM_003114	exon10	c.A1059C	p.K353N	AGGAAAAAGCGGA	.	1241.0	56.0	592.0	0.0	.	80	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113694807	113694807	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CSMD3	NM_198123	exon16	c.G2541T	p.G847G	GTTGTCCCCAAAC	.	195.0	122.0	109.0	0.0	.	2325	.	.	Atlas-SNP
COLEC10	10584	hgsc.bcm.edu	hg19	8	120103443	120103443	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	COLEC10	NM_006438	exon3	c.G276T	p.G92G	GACTGGGCCCATT	.	393.0	82.0	180.0	0.0	.	46	.	.	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	125083748	125083748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FER1L6	NM_001039112	exon31	c.G3968T	p.G1323V	TCCAGGGCTCCTT	.	126.0	9.0	46.0	0.0	.	268	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144895116	144895116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SCRIB	NM_015356	exon8	c.C658T	p.R220W	GGCGCCGCAGGTT	.	197.0	8.0	128.0	0.0	.	192	.	.	Atlas-SNP
SPINK4	27290	hgsc.bcm.edu	hg19	9	33246666	33246666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SPINK4	NM_014471	exon3	c.T155C	p.L52P	CCAACCTGGTCTG	.	45.0	12.0	53.0	0.0	.	7	.	.	Atlas-SNP
NPR2	4882	hgsc.bcm.edu	hg19	9	35792605	35792605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NPR2	NM_003995	exon1	c.T200C	p.V67A	GGTTTGTCAGCTC	.	55.0	6.0	75.0	0.0	.	162	.	.	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	hg19	9	73461375	73461375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TRPM3	NM_001007471	exon4	c.C595A	p.L199I	GCTTGAGTTTTGG	.	90.0	4.0	118.0	0.0	.	700	.	.	Atlas-SNP
RBM18	92400	hgsc.bcm.edu	hg19	9	125023740	125023740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	RBM18	NM_033117	exon2	c.A32G	p.E11G	GCATTCTCCAGGG	.	78.0	53.0	118.0	0.0	.	15	.	.	Atlas-SNP
FBXO18	84893	hgsc.bcm.edu	hg19	10	5948067	5948067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FBXO18	NM_032807	exon4	c.G378T	p.M126I	TGACATGGCCAAA	.	205.0	107.0	173.0	0.0	.	108	.	.	Atlas-SNP
MARCH8	220972	hgsc.bcm.edu	hg19	10	45954609	45954609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	MARCH8	NM_001002266	exon6	c.T530C	p.I177T	CGGTCAATGAGCA	.	101.0	28.0	70.0	0.0	.	29	.	.	Atlas-SNP
ZSWIM8	23053	hgsc.bcm.edu	hg19	10	75552318	75552318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	.	NM_001242488	exon10	c.A2021G	p.Y674C	GTGTGTACTTCTC	.	110.0	21.0	109.0	0.0	.	.	.	.	Atlas-SNP
CYP2C18	1562	hgsc.bcm.edu	hg19	10	96480254	96480254	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CYP2C18	NM_000772	exon6	c.A921G	p.R307R	TCTGAGATATGGA	.	84.0	47.0	49.0	0.0	.	79	.	.	Atlas-SNP
FAM204A	63877	hgsc.bcm.edu	hg19	10	120070724	120070724	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FAM204A	NM_001134672	exon7	c.A645G	p.A215A	CCCCCATGCAAGT	.	152.0	71.0	92.0	0.0	.	20	.	.	Atlas-SNP
ADAM12	8038	hgsc.bcm.edu	hg19	10	127824210	127824210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ADAM12	NM_021641	exon5	c.G368A	p.G123E	ACATGTCCATGGT	.	122.0	74.0	103.0	0.0	.	388	.	.	Atlas-SNP
ST5	6764	hgsc.bcm.edu	hg19	11	8752073	8752073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ST5	NM_005418	exon6	c.G764A	p.R255Q	TCCAGCCGGTAGA	.	76.0	28.0	73.0	0.0	.	85	.	.	Atlas-SNP
INSC	387755	hgsc.bcm.edu	hg19	11	15134030	15134030	+	Silent	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	INSC,colon,carcinoma,0,1	INSC	NM_001031853	exon1	c.T15C	p.P5P	GCCCCCTGGCAAT	.	96.0	7.0	89.0	0.0	.	104	.	.	Atlas-SNP
SPTY2D1	144108	hgsc.bcm.edu	hg19	11	18636742	18636742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SPTY2D1	NM_194285	exon3	c.A1079G	p.H360R	TTATTGTGTGGGG	.	114.0	31.0	123.0	0.0	.	72	.	.	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	hg19	11	26563568	26563568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ANO3	NM_031418	exon11	c.G1107T	p.W369C	GCGCTGGGCACGC	.	102.0	28.0	76.0	0.0	.	145	.	.	Atlas-SNP
OR8U1	219417	hgsc.bcm.edu	hg19	11	56143353	56143353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	OR8U1	NM_001005204	exon1	c.T254C	p.F85S	GGAATTTCTTGTA	.	60.0	19.0	44.0	0.0	.	59	.	.	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	hg19	11	57070061	57070061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TNKS1BP1	NM_033396	exon7	c.G4555A	p.E1519K	CGTCTTCTGTCTG	.	81.0	27.0	84.0	0.0	.	148	.	.	Atlas-SNP
MYRF	745	hgsc.bcm.edu	hg19	11	61537823	61537823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	.	NM_001127392	exon5	c.C566T	p.P189L	GCCCCCCGCCACC	.	146.0	51.0	160.0	0.0	.	.	.	.	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	hg19	11	84996278	84996278	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	DLG2	NM_001142699	exon4	c.C172T	p.Q58X	ATTTTTGAAGTCT	.	69.0	24.0	69.0	0.0	.	448	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92495069	92495069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	FAT3	NM_001008781	exon4	c.G3717T	p.W1239C	CATTTGGGTGGTG	.	126.0	45.0	98.0	0.0	.	1822	.	.	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118498741	118498741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PHLDB1	NM_001144758	exon6	c.G1202A	p.R401H	AGGACCGCCCTCC	.	75.0	21.0	68.0	0.0	.	103	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32137127	32137127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	.	NM_018169	exon4	c.A3238G	p.T1080A	CAGCAAACTACAT	.	145.0	44.0	119.0	0.0	.	.	.	.	Atlas-SNP
TFCP2	7024	hgsc.bcm.edu	hg19	12	51489814	51489814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TFCP2	NM_001173452	exon14	c.A1429G	p.N477D	GAAAGTTCTGTAT	.	74.0	28.0	74.0	0.0	.	49	.	.	Atlas-SNP
TAOK3	51347	hgsc.bcm.edu	hg19	12	118599689	118599689	+	Silent	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TAOK3	NM_016281	exon18	c.G2043T	p.T681T	CAGTTCCGTCTGG	.	78.0	25.0	61.0	0.0	.	151	.	.	Atlas-SNP
TDRD3	81550	hgsc.bcm.edu	hg19	13	61103006	61103006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TDRD3	NM_001146070	exon11	c.G1647C	p.R549S	TGACAGGAAATCA	.	306.0	42.0	362.0	0.0	.	123	.	.	Atlas-SNP
OR11H6	122748	hgsc.bcm.edu	hg19	14	20692717	20692717	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	OR11H6	NM_001004480	exon1	c.G849A	p.G283G	ATCAGGGAACCCA	.	72.0	27.0	79.0	0.0	.	60	.	.	Atlas-SNP
SALL2	6297	hgsc.bcm.edu	hg19	14	21992917	21992917	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SALL2	NM_005407	exon2	c.C945A	p.A315A	AGGCGAGGCAATC	.	51.0	18.0	37.0	0.0	.	95	.	.	Atlas-SNP
UNC79	57578	hgsc.bcm.edu	hg19	14	94173087	94173087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	UNC79	NM_020818	exon50	c.T7214A	p.I2405N	AGGCTATTCAGAA	.	115.0	50.0	130.0	0.0	.	366	.	.	Atlas-SNP
AK7	122481	hgsc.bcm.edu	hg19	14	96953300	96953300	+	Silent	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	AK7	NM_152327	exon17	c.G2040A	p.L680L	TCCCCTGAGAAAC	.	67.0	22.0	68.0	0.0	.	69	.	.	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33961610	33961610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	RYR3	NM_001243996	exon37	c.T5675C	p.I1892T	AGGAGATTCGGGA	.	99.0	34.0	106.0	0.0	.	760	.	.	Atlas-SNP
C15orf55	256646	hgsc.bcm.edu	hg19	15	34640395	34640395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	C15orf55	NM_175741	exon2	c.G242A	p.S81N	GCCTCAGTGGGGC	.	110.0	40.0	86.0	0.0	.	110	.	.	Atlas-SNP
GABPB1	2553	hgsc.bcm.edu	hg19	15	50595257	50595257	+	Missense_Mutation	SNP	G	G	T	rs376724985	alternate_allele	TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	GABPB1	NM_016654	exon4	c.C340A	p.H114N	GATTGTGTTCTGT	.	44.0	18.0	30.0	0.0	.	33	.	.	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	hg19	15	92459362	92459362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SLCO3A1	NM_013272	exon2	c.G320T	p.R107L	GGCCGCGCCTGAT	.	49.0	18.0	57.0	0.0	.	84	.	.	Atlas-SNP
HAGHL	84264	hgsc.bcm.edu	hg19	16	778845	778845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	HAGHL	NM_032304	exon6	c.A550G	p.K184E	GCCCAGAAAGTGG	.	129.0	51.0	171.0	0.0	.	18	.	.	Atlas-SNP
IGFALS	3483	hgsc.bcm.edu	hg19	16	1841152	1841152	+	Missense_Mutation	SNP	C	C	G	rs200564045	alternate_allele	TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	IGFALS	NM_001146006	exon2	c.G1381C	p.V461L	TGCCCACGAGGCC	.	51.0	22.0	74.0	0.0	.	29	.	.	Atlas-SNP
ANKS3	124401	hgsc.bcm.edu	hg19	16	4780104	4780104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ANKS3	NM_133450	exon3	c.G47A	p.R16H	AAGCTGCGGTTCA	.	69.0	28.0	61.0	0.0	.	44	.	.	Atlas-SNP
NFAT5	10725	hgsc.bcm.edu	hg19	16	69724937	69724937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NFAT5	NM_138713	exon12	c.A1869C	p.E623D	GAGTGAAGATGTT	.	131.0	78.0	196.0	0.0	.	184	.	.	Atlas-SNP
EZH1	2145	hgsc.bcm.edu	hg19	17	40854591	40854591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	EZH1	NM_001991	exon21	c.C2203T	p.L735F	ACTTGAGAGCATC	.	113.0	12.0	94.0	0.0	.	62	.	.	Atlas-SNP
SRSF1	6426	hgsc.bcm.edu	hg19	17	56082880	56082880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	SRSF1	NM_006924	exon4	c.C634A	p.R212S	TGCTACGACTACG	.	106.0	47.0	119.0	0.0	.	41	.	.	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62506387	62506387	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CEP95	NM_138363	exon3	c.C245G	p.S82C	GCTTGTCTCACAT	.	120.0	43.0	103.0	0.0	.	103	.	.	Atlas-SNP
UTS2R	2837	hgsc.bcm.edu	hg19	17	80332945	80332945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	UTS2R	NM_018949	exon1	c.G745C	p.A249P	AAGCGGGCCCGGC	.	21.0	11.0	31.0	0.0	.	25	.	.	Atlas-SNP
FOXK2	3607	hgsc.bcm.edu	hg19	17	80477826	80477826	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	FOXK2,NS,carcinoma,0,1	FOXK2	NM_004514	exon1	c.G62C	p.G21A	GGGCCGGGGGCGG	.	3.0	2.0	2.0	0.0	.	46	.	.	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2920307	2920307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	LPIN2	NM_014646	exon20	c.T2675A	p.L892Q	TCATCCAGGTCCA	.	134.0	43.0	116.0	0.0	.	75	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	7026082	7026082	+	Silent	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	LAMA1	NM_005559	exon17	c.C2298A	p.G766G	GTGGACGCCGGTG	.	155.0	51.0	161.0	0.0	.	458	.	.	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50734122	50734122	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	DCC	NM_005215	exon11	c.T1796A	p.L599X	GATTCTTAGCTTA	.	96.0	15.0	75.0	0.0	.	360	.	.	Atlas-SNP
CCDC68	80323	hgsc.bcm.edu	hg19	18	52604189	52604189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	CCDC68	NM_025214	exon6	c.C346A	p.L116M	CTTGCAGCTAGAA	.	72.0	30.0	48.0	0.0	.	38	.	.	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	hg19	18	74672680	74672680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ZNF236	NM_007345	exon30	c.A5282G	p.Q1761R	TCAACCAGAAGAG	.	111.0	39.0	71.0	0.0	.	325	.	.	Atlas-SNP
ZNF99	7652	hgsc.bcm.edu	hg19	19	22940974	22940974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ZNF99	NM_001080409	exon4	c.T1737A	p.H579Q	AGTAAGATGTGAA	.	248.0	86.0	205.0	0.0	.	273	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48598746	48598746	+	Silent	SNP	A	A	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PLA2G4C	NM_001159322	exon7	c.T714G	p.P238P	TCTCTCAGGGTGA	.	94.0	21.0	74.0	0.0	.	76	.	.	Atlas-SNP
PLA2G4C	8605	hgsc.bcm.edu	hg19	19	48598748	48598748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PLA2G4C	NM_001159322	exon7	c.C712T	p.P238S	TCTCAGGGTGAGT	.	94.0	21.0	73.0	0.0	.	76	.	.	Atlas-SNP
HSPA12B	116835	hgsc.bcm.edu	hg19	20	3730781	3730781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	HSPA12B	NM_052970	exon11	c.C1208T	p.A403V	ACCGTGCAGGGGC	.	126.0	43.0	98.0	0.0	.	43	.	.	Atlas-SNP
PTPRT	11122	hgsc.bcm.edu	hg19	20	41306596	41306596	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PTPRT	NM_007050	exon7	c.G1063T	p.E355X	CATACTCAACATC	.	121.0	46.0	96.0	0.0	.	372	.	.	Atlas-SNP
PPP1R3D	5509	hgsc.bcm.edu	hg19	20	58514513	58514513	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PPP1R3D	NM_006242	exon1	c.T474C	p.D158D	CGGGAAATCGGGC	.	147.0	27.0	165.0	0.0	.	23	.	.	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	hg19	20	60890252	60890252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	LAMA5	NM_005560	exon59	c.A7879C	p.K2627Q	TCTTCTTGCTTGT	.	20.0	7.0	25.0	0.0	.	268	.	.	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	hg19	21	41385098	41385098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	DSCAM,colon,carcinoma,0,1	DSCAM	NM_001389	exon33	c.G5902A	p.V1968M	TGGCCACGGCCCC	.	107.0	48.0	90.0	0.0	.	347	.	.	Atlas-SNP
PWP2	5822	hgsc.bcm.edu	hg19	21	45545890	45545890	+	Splice_Site	SNP	A	A	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	PWP2	NM_005049	exon16	c.1966-2A>T	.	TGTTCTAGGAATT	.	56.0	21.0	63.0	0.0	.	64	.	.	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17589625	17589625	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	IL17RA,NS,carcinoma,0,1	IL17RA	NM_014339	exon13	c.G1516C	p.E506Q	TTCAGCGAGGTCA	.	71.0	3.0	71.0	0.0	.	62	.	.	Atlas-SNP
TUBGCP6	85378	hgsc.bcm.edu	hg19	22	50656996	50656996	+	Silent	SNP	G	G	A	rs373718907		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	TUBGCP6,NS,carcinoma,0,1	TUBGCP6	NM_020461	exon22	c.C4875T	p.S1625S	GACGCCGCTGTAC	.	141.0	55.0	196.0	0.0	.	132	.	.	Atlas-SNP
ARX	170302	hgsc.bcm.edu	hg19	X	25022795	25022795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ARX	NM_139058	exon5	c.G1681T	p.V561L	AGCACACCTCCTT	.	68.0	56.0	85.0	0.0	.	19	.	.	Atlas-SNP
NR0B1	190	hgsc.bcm.edu	hg19	X	30327147	30327147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	NR0B1	NM_000475	exon1	c.G334A	p.D112N	CGGGATCAGAGCC	.	117.0	11.0	131.0	0.0	.	61	.	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	hg19	X	48932926	48932926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	WDR45	NM_007075	exon11	c.G845T	p.G282V	ACCTTGCCCACGC	.	103.0	69.0	146.0	0.0	.	40	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4257	4257	+	Silent	SNP	A	A	G	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	.	ENST00000361390	exon1	c.A951G	p.Q317Q	CCCTCAAACCTAA	.	52.0	7.0	8.0	0.0	.	.	.	.	Atlas-SNP
ROBO4	54538	hgsc.bcm.edu	hg19	11	124767647	124767656	+	Frame_Shift_Del	DEL	CAGGGAACCC	CAGGGAACCC	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	CAGGGAACCC	CAGGGAACCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ROBO4	NM_019055	exon1	c.37_46del	p.13_16del	.	.	235.0	42.0	304.0	0.0	.	130	.	.	Atlas-INDEL
TP53	7157	hgsc.bcm.edu	hg19	17	7577572	7577572	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	TP53_ENST00000545858,NS,adenocarcinoma,+1,30	TP53	NM_001126112	exon7	c.710delT	p.M237fs	.	.	44.0	28.0	81.0	0.0	.	33396	.	.	Atlas-Indel,Pindel
UGT1A5	54579	hgsc.bcm.edu	hg19	2	234681067	234681087	+	In_Frame_Del	DEL	CTTGGACGTGATTGGTTTCCT	CTTGGACGTGATTGGTTTCCT	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	CTTGGACGTGATTGGTTTCCT	CTTGGACGTGATTGGTTTCCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	UGT1A5	NM_019078	exon5	c.1466_1486del	p.489_496del	.	.	126.0	10.0	143.0	0.0	.	66	.	.	Atlas-Indel,Pindel
METTL11B	149281	hgsc.bcm.edu	hg19	1	170135847	170135847	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	METTL11B	NM_001136107	exon3	c.534delA	p.T178fs	.	.	87.0	56.0	133.0	0.0	.	18	.	.	Atlas-Indel,Pindel
ROBO4	54538	hgsc.bcm.edu	hg19	11	124767659	124767660	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ROBO4	NM_019055	exon1	c.33_34del	p.11_12del	.	.	217.0	42.0	272.0	0.0	.	130	.	.	Atlas-INDEL
CPSF2	53981	hgsc.bcm.edu	hg19	14	92625383	92625414	+	Frame_Shift_Del	DEL	TGAATTAGCTTGGATAGATGGTGTCTTAGATA	TGAATTAGCTTGGATAGATGGTGTCTTAGATA	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	TGAATTAGCTTGGATAGATGGTGTCTTAGATA	TGAATTAGCTTGGATAGATGGTGTCTTAGATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	CPSF2,NS,carcinoma,0,1	CPSF2	NM_017437	exon14	c.1877_1908del	p.626_636del	.	.	190.0	32.0	222.0	0.0	.	63	.	.	Atlas-Indel,Pindel
ENKUR	219670	hgsc.bcm.edu	hg19	10	25284594	25284594	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ENKUR	NM_145010	exon3	c.429delA	p.P143fs	.	.	111.0	44.0	68.0	0.0	.	30	.	.	Atlas-Indel,Pindel
TF	7018	hgsc.bcm.edu	hg19	3	133483097	133483120	+	In_Frame_Del	DEL	TGTCTTGGCAGAAAACTACAATAG	TGTCTTGGCAGAAAACTACAATAG	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	TGTCTTGGCAGAAAACTACAATAG	TGTCTTGGCAGAAAACTACAATAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	TF	NM_001063	exon10	c.1274_1297del	p.425_433del	.	.	79.0	18.0	85.0	0.0	.	116	.	.	Pindel
ROBO4	54538	hgsc.bcm.edu	hg19	11	124767648	124767660	+	Frame_Shift_Del	DEL	AGGGAACCCCTGC	AGGGAACCCCTGC	-	novel		TCGA-2Y-A9HA-01A-11D-A38X-10	TCGA-2Y-A9HA-10A-01D-A38X-10	AGGGAACCCCTGC	AGGGAACCCCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	606c736e-1be8-44fc-b474-9dea8b63538f	c6d9a5a6-64e5-45ab-8251-ed6d2f3514aa	.	ROBO4	NM_019055	exon1	c.33_45del	p.11_15del	.	.	229.0	44.0	290.0	0.0	.	130	.	.	Pindel