Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm HENMT1 113802 hgsc.bcm.edu hg19 1 109191371 109191371 + Silent SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . HENMT1 NM_144584 exon8 c.C999T p.F333F AACACAGAAGGGT . 77.0 51.0 180.0 1.0 . 38 . . Atlas-SNP VPS45 11311 hgsc.bcm.edu hg19 1 150053492 150053492 + Silent SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . VPS45 NM_007259 exon8 c.G756T p.V252V CAGAGTGCCGGGA . 194.0 47.0 144.0 0.0 . 47 . . Atlas-SNP UBAP2L 9898 hgsc.bcm.edu hg19 1 154201144 154201144 + Silent SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . UBAP2L NM_001127320 exon4 c.C222T p.D74D GCATGACTGCAAT . 62.0 12.0 44.0 0.0 . 197 . . Atlas-SNP FLAD1 80308 hgsc.bcm.edu hg19 1 154962718 154962718 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . FLAD1 NM_025207 exon4 c.A1349T p.Q450L TTCTACAGGACAC . 215.0 94.0 134.0 0.0 . 52 . . Atlas-SNP TBX19 9095 hgsc.bcm.edu hg19 1 168250458 168250458 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TBX19 NM_005149 exon1 c.A130G p.I44V CAGATCATCCTGG . 232.0 53.0 174.0 0.0 . 68 . . Atlas-SNP FMO2 2327 hgsc.bcm.edu hg19 1 171176859 171176859 + Silent SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . FMO2 NM_001460 exon8 c.T1186C p.L396L TTAGGCTTGTGTA . 423.0 98.0 283.0 0.0 . 66 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176564000 176564000 + Silent SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PAPPA2 NM_021936 exon3 c.T1260C p.R420R TTTCCGTGGACAC . 161.0 39.0 104.0 0.0 . 665 . . Atlas-SNP TGFB2 7042 hgsc.bcm.edu hg19 1 218578606 218578606 + Missense_Mutation SNP G G C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TGFB2 NM_001135599 exon3 c.G526C p.E176Q AAAGCAGAGTTCA . 160.0 30.0 135.0 0.0 . 102 . . Atlas-SNP KIF26B 55083 hgsc.bcm.edu hg19 1 245862336 245862336 + Missense_Mutation SNP G G C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . KIF26B NM_018012 exon14 c.G6175C p.E2059Q CTCAGTGAATGTA . 148.0 67.0 102.0 0.0 . 343 . . Atlas-SNP PQLC3 130814 hgsc.bcm.edu hg19 2 11300609 11300609 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PQLC3 NM_152391 exon2 c.G161T p.R54L TTCTGCGGTACCA . 52.0 16.0 73.0 0.0 . 8 . . Atlas-SNP SEMA4F 10505 hgsc.bcm.edu hg19 2 74900921 74900921 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb SEMA4F,NS,carcinoma,0,1 SEMA4F NM_004263 exon7 c.G788A p.R263H ACGAGCGCATTAA . 58.0 24.0 71.0 0.0 . 89 . . Atlas-SNP PROC 5624 hgsc.bcm.edu hg19 2 128184696 128184696 + Missense_Mutation SNP T T A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PROC NM_000312 exon8 c.T694A p.S232T CTGGACTCAAAGA . 53.0 22.0 56.0 0.0 . 31 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179596477 179596477 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TTN NM_001267550 exon58 c.T17125C p.C5709R CCCGACACTGGTA . 73.0 26.0 93.0 0.0 . 18412 . . Atlas-SNP NBEAL1 65065 hgsc.bcm.edu hg19 2 204031020 204031020 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . NBEAL1 NM_001114132 exon36 c.G5776A p.G1926R GAAGATGGTGAGG . 216.0 55.0 218.0 0.0 . 266 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238253721 238253721 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . COL6A3 NM_004369 exon34 c.A7142G p.Q2381R ATGCTTTGGATGA . 183.0 89.0 223.0 0.0 . 608 . . Atlas-SNP SHISA5 51246 hgsc.bcm.edu hg19 3 48520585 48520585 + Splice_Site SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SHISA5 NM_016479 exon4 c.314+1G>A . TACTTACCCTGAC . 55.0 19.0 59.0 0.0 . 10 . . Atlas-SNP ROBO2 6092 hgsc.bcm.edu hg19 3 77147199 77147199 + Silent SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ROBO2 NM_002942 exon2 c.G96A p.R32R CCCGCGGATTGTG . 86.0 34.0 116.0 0.0 . 527 . . Atlas-SNP TRAT1 50852 hgsc.bcm.edu hg19 3 108572654 108572654 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TRAT1 NM_016388 exon6 c.A491G p.E164G CAGTAGAGGAAAA . 280.0 107.0 393.0 0.0 . 48 . . Atlas-SNP STK32B 55351 hgsc.bcm.edu hg19 4 5399957 5399957 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . STK32B NM_018401 exon5 c.T458C p.L153P ATATCCTGCTGGA . 68.0 27.0 87.0 0.0 . 87 . . Atlas-SNP WDR19 57728 hgsc.bcm.edu hg19 4 39280267 39280267 + Silent SNP G G C rs371200402 alternate_allele TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . WDR19 NM_025132 exon36 c.G4026C p.L1342L GGAACTGTGATTG . 157.0 70.0 187.0 0.0 . 96 . . Atlas-SNP BEND4 389206 hgsc.bcm.edu hg19 4 42154069 42154069 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb BEND4,NS,carcinoma,0,1 BEND4 NM_001159547 exon2 c.C92A p.P31H TTGCTGGGGAACG . 82.0 29.0 113.0 0.0 . 67 . . Atlas-SNP GSTCD 79807 hgsc.bcm.edu hg19 4 106766631 106766631 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GSTCD NM_001031720 exon12 c.G1799T p.R600L TGGATCGAGCAAG . 74.0 30.0 78.0 0.0 . 69 . . Atlas-SNP SORBS2 8470 hgsc.bcm.edu hg19 4 186544464 186544464 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SORBS2 NM_001270771 exon16 c.C2407A p.P803T GCACAGGACTGAC . 44.0 18.0 56.0 0.0 . 300 . . Atlas-SNP TMEM174 134288 hgsc.bcm.edu hg19 5 72469952 72469952 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb TMEM174,NS,malignant_melanoma,0,1 TMEM174 NM_153217 exon2 c.C692G p.S231C GCTTCTCTCCTCC . 106.0 29.0 122.0 0.0 . 22 . . Atlas-SNP PCDHB12 56124 hgsc.bcm.edu hg19 5 140589288 140589288 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PCDHB12 NM_018932 exon1 c.A809T p.D270V ATTTAGACTCTGG . 115.0 44.0 132.0 0.0 . 179 . . Atlas-SNP PCDH1 5097 hgsc.bcm.edu hg19 5 141248468 141248468 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PCDH1 NM_032420 exon2 c.C569T p.P190L GCCAGCGGGATGG . 182.0 77.0 185.0 0.0 . 119 . . Atlas-SNP HIVEP1 3096 hgsc.bcm.edu hg19 6 12121246 12121246 + Silent SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . HIVEP1 NM_002114 exon4 c.T1218C p.Y406Y AAAATATATTTGT . 84.0 29.0 91.0 0.0 . 242 . . Atlas-SNP SLC17A3 10786 hgsc.bcm.edu hg19 6 25850803 25850803 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SLC17A3 NM_001098486 exon8 c.T877C p.S293P GTAGAGATCTGAG . 114.0 39.0 119.0 0.0 . 95 . . Atlas-SNP PRRT1 80863 hgsc.bcm.edu hg19 6 32117406 32117406 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PRRT1 NM_030651 exon3 c.C652A p.R218S GCGGGCGCCTCGG . 61.0 30.0 89.0 0.0 . 14 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32190405 32190405 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . NOTCH4 NM_004557 exon3 c.G334A p.E112K ATCTCTCACCAGT . 153.0 51.0 172.0 0.0 . 201 . . Atlas-SNP GLP1R 2740 hgsc.bcm.edu hg19 6 39048499 39048499 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GLP1R NM_002062 exon12 c.G1208A p.C403Y TATACTGCTTTGT . 70.0 23.0 83.0 0.0 . 64 . . Atlas-SNP GLP1R 2740 hgsc.bcm.edu hg19 6 39048500 39048500 + Nonsense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GLP1R NM_002062 exon12 c.C1209A p.C403X ATACTGCTTTGTC . 70.0 23.0 82.0 0.0 . 64 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76023250 76023250 + Silent SNP C C T rs147346630 alternate_allele TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . FILIP1 NM_015687 exon5 c.G2298A p.G766G CTCCTGCCCCATG . 79.0 27.0 113.0 0.0 . 173 . C|1.000;A|0.000 Atlas-SNP GRID2IP 392862 hgsc.bcm.edu hg19 7 6547714 6547714 + Silent SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GRID2IP NM_001145118 exon13 c.C2446A p.R816R GGCCCCGGGACAG . 27.0 8.0 39.0 0.0 . 82 . . Atlas-SNP TNS3 64759 hgsc.bcm.edu hg19 7 47408695 47408695 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TNS3 NM_022748 exon17 c.C1548A p.S516R GTTCTGGCTGCTC . 78.0 23.0 78.0 0.0 . 140 . . Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 152132847 152132847 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . MLL3 NM_170606 exon1 c.G25A p.V9M GCTCCACGCTCTT . 137.0 42.0 141.0 0.0 . 1564 . . Atlas-SNP PINX1 54984 hgsc.bcm.edu hg19 8 10690495 10690495 + Splice_Site SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PINX1 NM_017884 exon4 c.130-1G>A . TAAACCCTGTGGA . 29.0 13.0 76.0 0.0 . 38 . . Atlas-SNP MCM4 4173 hgsc.bcm.edu hg19 8 48883923 48883923 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . MCM4 NM_182746 exon13 c.A1823T p.N608I AGCTCAATGCGCG . 152.0 31.0 86.0 0.0 . 97 . . Atlas-SNP JRK 8629 hgsc.bcm.edu hg19 8 143747230 143747230 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . . NM_003724 exon2 c.C248T p.T83M TTGGGCGTGTGCA . 112.0 23.0 62.0 0.0 . . . . Atlas-SNP TIGD5 84948 hgsc.bcm.edu hg19 8 144681433 144681433 + Missense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TIGD5 NM_032862 exon1 c.C1360A p.L454I TTCATGCTCAAGG . 174.0 37.0 98.0 0.0 . 22 . . Atlas-SNP IFNB1 3456 hgsc.bcm.edu hg19 9 21077442 21077442 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . IFNB1 NM_002176 exon1 c.C427A p.L143M TTTTCAGGTGCAG . 71.0 41.0 159.0 0.0 . 33 . . Atlas-SNP GPR144 347088 hgsc.bcm.edu hg19 9 127218951 127218951 + Silent SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GPR144 NM_001161808 exon8 c.C1500G p.P500P GGCACCCCTGCTG . 17.0 10.0 56.0 0.0 . 33 . . Atlas-SNP ST8SIA6 338596 hgsc.bcm.edu hg19 10 17363172 17363172 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ST8SIA6 NM_001004470 exon8 c.C902T p.P301L TACTTGGGATGGA . 128.0 54.0 195.0 0.0 . 85 . . Atlas-SNP PRKG1 5592 hgsc.bcm.edu hg19 10 54042015 54042015 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb PRKG1,ear,carcinoma,0,1 PRKG1 NM_006258 exon14 c.C1648T p.H550Y AAAGGCCATGACA . 109.0 41.0 164.0 0.0 . 167 . . Atlas-SNP DDIT4 54541 hgsc.bcm.edu hg19 10 74034129 74034129 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . DDIT4 NM_019058 exon2 c.C155G p.S52W AGAGCTCGGACTG . 45.0 20.0 40.0 0.0 . 14 . . Atlas-SNP SH3PXD2A 9644 hgsc.bcm.edu hg19 10 105361743 105361743 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SH3PXD2A NM_014631 exon14 c.G3148A p.V1050I TAGAGACGTACAC . 70.0 29.0 74.0 0.0 . 90 . . Atlas-SNP CCDC147 159686 hgsc.bcm.edu hg19 10 106163548 106163548 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CCDC147 NM_001008723 exon14 c.G2101A p.E701K GCCCTGGAGGAGG . 78.0 35.0 88.0 0.0 . 137 . . Atlas-SNP MRGPRX4 117196 hgsc.bcm.edu hg19 11 18195075 18195075 + Missense_Mutation SNP G G C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . MRGPRX4 NM_054032 exon1 c.G272C p.S91T ATATCAGCCATCT . 90.0 27.0 105.0 0.0 . 68 . . Atlas-SNP ARFGAP2 84364 hgsc.bcm.edu hg19 11 47193261 47193261 + Missense_Mutation SNP G G A rs138040761 TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ARFGAP2 NM_032389 exon9 c.C763T p.R255C GCTCACGGAGCTT . 54.0 5.0 46.0 0.0 . 43 . G|1.000;A|0.000 Atlas-SNP OR1S1 219959 hgsc.bcm.edu hg19 11 57983067 57983067 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . OR1S1 NM_001004458 exon1 c.A851T p.D284V ACACTGATAAGAT . 107.0 27.0 141.0 0.0 . 139 . . Atlas-SNP MFRP 83552 hgsc.bcm.edu hg19 11 119213689 119213689 + Silent SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . MFRP NM_031433 exon10 c.C1149A p.P383P GAGGTGGGGGGGT . 50.0 21.0 74.0 0.0 . 63 . . Atlas-SNP BLID 414899 hgsc.bcm.edu hg19 11 121986326 121986326 + Missense_Mutation SNP T T A rs375451446 alternate_allele TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . BLID NM_001001786 exon1 c.A305T p.N102I GAGGAATTGCATA . 100.0 41.0 107.0 0.0 . 20 . . Atlas-SNP ESAM 90952 hgsc.bcm.edu hg19 11 124626226 124626226 + Missense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ESAM NM_138961 exon4 c.G484T p.G162C GCACACCCTGGAG . 40.0 10.0 59.0 0.0 . 31 . . Atlas-SNP ZNF384 171017 hgsc.bcm.edu hg19 12 6787570 6787570 + Missense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ZNF384 NM_133476 exon6 c.G409T p.A137S TCTGAGCTGATGA . 116.0 38.0 117.0 0.0 . 102 . . Atlas-SNP TAS2R20 259295 hgsc.bcm.edu hg19 12 11150332 11150332 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TAS2R20 NM_176889 exon1 c.T143C p.I48T GCAGCAATAATTT . 218.0 80.0 292.0 0.0 . 17 . . Atlas-SNP DAZAP2 9802 hgsc.bcm.edu hg19 12 51634874 51634874 + Missense_Mutation SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . DAZAP2 NM_001136269 exon3 c.G352T p.A118S TTTGGAGCTGGGG . 31.0 12.0 52.0 0.0 . 6 . . Atlas-SNP CSAD 51380 hgsc.bcm.edu hg19 12 53566426 53566426 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CSAD NM_015989 exon5 c.G214C p.E72Q TCCACTCACAGAC . 23.0 10.0 43.0 0.0 . 66 . . Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64377754 64377754 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SRGAP1 NM_020762 exon2 c.A95T p.Q32L AACAACAAAAATG . 82.0 38.0 83.0 0.0 . 146 . . Atlas-SNP RNF17 56163 hgsc.bcm.edu hg19 13 25378454 25378454 + Missense_Mutation SNP T T A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . RNF17 NM_001184993 exon15 c.T1978A p.F660I AGTCACTTTGAAA . 81.0 29.0 103.0 0.0 . 259 . . Atlas-SNP OLFM4 10562 hgsc.bcm.edu hg19 13 53608515 53608515 + Silent SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . OLFM4 NM_006418 exon2 c.C237T p.D79D GGATGACCGTGGG . 68.0 18.0 103.0 0.0 . 94 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77836229 77836229 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . MYCBP2 NM_015057 exon11 c.G1606A p.A536T GTCCTGCACCAAG . 44.0 13.0 44.0 0.0 . 1029 . . Atlas-SNP SPATA7 55812 hgsc.bcm.edu hg19 14 88857749 88857749 + Missense_Mutation SNP G G T rs200551653 alternate_allele TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SPATA7 NM_018418 exon2 c.G44T p.R15I TTCCCAGATATGG . 69.0 25.0 93.0 0.0 . 58 . G|0.999;C|0.001 Atlas-SNP DUOXA2 405753 hgsc.bcm.edu hg19 15 45410034 45410034 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . DUOXA2 NM_207581 exon6 c.C890T p.P297L GCTCACCTCTTAT . 77.0 39.0 106.0 0.0 . 38 . . Atlas-SNP CSPG4 1464 hgsc.bcm.edu hg19 15 75968199 75968199 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CSPG4 NM_001897 exon10 c.A6661G p.N2221D ACATGTTGGCCTC . 30.0 9.0 38.0 0.0 . 175 . . Atlas-SNP GP2 2813 hgsc.bcm.edu hg19 16 20335564 20335564 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GP2 NM_001502 exon3 c.A109G p.I37V CTTCAATGGGGTT . 143.0 65.0 199.0 0.0 . 122 . . Atlas-SNP ITFG1 81533 hgsc.bcm.edu hg19 16 47292650 47292650 + Missense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ITFG1 NM_030790 exon12 c.G1223T p.G408V AAGATTCCCTGGA . 42.0 8.0 40.0 0.0 . 49 . . Atlas-SNP VPS4A 27183 hgsc.bcm.edu hg19 16 69356497 69356497 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . VPS4A NM_013245 exon10 c.T1106C p.M369T GCATGATGATTGA . 64.0 5.0 85.0 0.0 . 18 . . Atlas-SNP PKD1L2 114780 hgsc.bcm.edu hg19 16 81232485 81232485 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PKD1L2 NM_001076780 exon7 c.T1325C p.I442T ACTGTAATGTTTC . 145.0 43.0 191.0 0.0 . 361 . . Atlas-SNP ATAD5 79915 hgsc.bcm.edu hg19 17 29162604 29162604 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ATAD5 NM_024857 exon2 c.A1505G p.K502R CTCAAAAGAAAGA . 205.0 87.0 240.0 0.0 . 150 . . Atlas-SNP PIGW 284098 hgsc.bcm.edu hg19 17 34893442 34893442 + Silent SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PIGW NM_178517 exon2 c.A492G p.T164T TGGGACAGGAGCA . 102.0 32.0 135.0 0.0 . 50 . . Atlas-SNP SOCS7 30837 hgsc.bcm.edu hg19 17 36508540 36508540 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SOCS7 NM_014598 exon1 c.G413A p.S138N AGCTCAGCAGCCC . 194.0 81.0 217.0 0.0 . 22 . . Atlas-SNP SOCS7 30837 hgsc.bcm.edu hg19 17 36508541 36508541 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . SOCS7 NM_014598 exon1 c.C414G p.S138R GCTCAGCAGCCCG . 189.0 80.0 220.0 0.0 . 22 . . Atlas-SNP BRCA1 672 hgsc.bcm.edu hg19 17 41246777 41246777 + Silent SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . BRCA1 NM_007298 exon9 c.T771C p.H257H TTCTGGATGCCTC . 53.0 25.0 71.0 0.0 . 304 . . Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65174829 65174829 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb HELZ,NS,carcinoma,0,2 HELZ NM_014877 exon13 c.G1376C p.R459P TGTAACCGTGACT . 78.0 21.0 126.0 0.0 . 160 . . Atlas-SNP CBX4 8535 hgsc.bcm.edu hg19 17 77808906 77808906 + Nonsense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CBX4 NM_003655 exon5 c.G535T p.E179X GCGCCTCCTTGTG . 49.0 17.0 61.0 0.0 . 40 . . Atlas-SNP SMAD4 4089 hgsc.bcm.edu hg19 18 48604747 48604747 + Missense_Mutation SNP C C G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb SMAD4,NS,carcinoma,0,3 SMAD4 NM_005359 exon12 c.C1569G p.C523W ACCTTGCTGGATT . 52.0 33.0 103.0 0.0 . 822 . . Atlas-SNP CTDP1 9150 hgsc.bcm.edu hg19 18 77474844 77474844 + Missense_Mutation SNP A A T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CTDP1 NM_004715 exon8 c.A1384T p.S462C AGCAGCAGTGAGT . 58.0 31.0 152.0 0.0 . 67 . . Atlas-SNP LPPR3 0 hgsc.bcm.edu hg19 19 813388 813388 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . . NM_024888 exon7 c.G1423A p.E475K CGTCCTCCTCCTC . 34.0 13.0 36.0 0.0 . . . . Atlas-SNP NFIC 4782 hgsc.bcm.edu hg19 19 3449113 3449113 + Missense_Mutation SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . NFIC NM_001245004 exon7 c.C1060T p.R354W CACCACCGGCCCG . 65.0 29.0 82.0 0.0 . 36 . . Atlas-SNP FCER2 2208 hgsc.bcm.edu hg19 19 7763670 7763670 + Silent SNP G G T rs376326260 alternate_allele TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . FCER2 NM_002002 exon3 c.C93A p.T31T AGCGGCGGTCACC . 101.0 35.0 113.0 0.0 . 19 . . Atlas-SNP C19orf57 79173 hgsc.bcm.edu hg19 19 14006250 14006250 + Silent SNP C C T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . C19orf57 NM_024323 exon3 c.G141A p.E47E TTTGCCCTCTGGC . 113.0 44.0 163.0 0.0 . 34 . . Atlas-SNP PLEKHG2 64857 hgsc.bcm.edu hg19 19 39915656 39915656 + Missense_Mutation SNP G G C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PLEKHG2 NM_022835 exon19 c.G3883C p.G1295R CGGCAGGGGCCTG . 40.0 19.0 65.0 0.0 . 329 . . Atlas-SNP BPIFA2 140683 hgsc.bcm.edu hg19 20 31760750 31760750 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . . NM_080574 exon3 c.A170G p.K57R TTGAGAAACTGAA . 83.0 33.0 101.0 0.0 . . . . Atlas-SNP DLGAP4 22839 hgsc.bcm.edu hg19 20 35060202 35060202 + Missense_Mutation SNP G G A rs374922768 TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . DLGAP4 NM_014902 exon2 c.G82A p.D28N GGGACCGACCGCA . 197.0 98.0 250.0 0.0 . 111 . . Atlas-SNP NCAM2 4685 hgsc.bcm.edu hg19 21 22782741 22782741 + Missense_Mutation SNP A A G novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . NCAM2 NM_004540 exon10 c.A1343G p.N448S CGACCAATTTAAA . 245.0 95.0 318.0 1.0 . 220 . . Atlas-SNP UPRT 139596 hgsc.bcm.edu hg19 X 74494410 74494410 + Silent SNP G G T novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . UPRT NM_145052 exon1 c.G321T p.G107G GATCGGGGCGCAG . 102.0 86.0 157.0 0.0 . 46 . . Atlas-SNP GABRQ 55879 hgsc.bcm.edu hg19 X 151818999 151818999 + Nonsense_Mutation SNP C C A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GABRQ NM_018558 exon7 c.C857A p.S286X GGATATCGTTTTG . 115.0 83.0 118.0 0.0 . 131 . . Atlas-SNP PCDH11Y 83259 hgsc.bcm.edu hg19 Y 4967469 4967469 + Missense_Mutation SNP G G A novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . PCDH11Y NM_032972 exon2 c.G1850A p.R617K TTCCAAGGCATGG . 154.0 109.0 226.0 0.0 . 163 . . Atlas-SNP COX2 5743 hgsc.bcm.edu hg19 MT 7695 7695 + Missense_Mutation SNP T T C novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . . ENST00000361739 exon1 c.T110C p.L37P GCTTCCTAGTCCT . 26.0 22.0 20.0 0.0 . . . . Atlas-SNP GZMH 2999 hgsc.bcm.edu hg19 14 25076509 25076509 + Frame_Shift_Del DEL C C - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb GZMH,NS,carcinoma,0,1 GZMH NM_033423 exon4 c.444delT p.G148fs . . 32.0 16.0 40.0 0.0 . 24 . . Atlas-Indel,Pindel ITPKB 3707 hgsc.bcm.edu hg19 1 226923826 226923826 + Frame_Shift_Del DEL C C - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ITPKB NM_002221 exon2 c.1335delA p.G445fs . . 87.0 13.0 84.0 0.0 . 158 . . Atlas-Indel,Pindel CHRM1 1128 hgsc.bcm.edu hg19 11 62677923 62677927 + Frame_Shift_Del DEL TTCTC TTCTC - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 TTCTC TTCTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . CHRM1 NM_000738 exon2 c.647_651del p.216_217del . . 37.0 18.0 60.0 0.0 . 29 . . Atlas-Indel,Pindel TACR3 6870 hgsc.bcm.edu hg19 4 104640792 104640792 + Frame_Shift_Del DEL C C - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . TACR3 NM_001059 exon1 c.42delT p.G14fs . . 46.0 18.0 55.0 0.0 . 102 . . Atlas-Indel,Pindel ZSCAN16 80345 hgsc.bcm.edu hg19 6 28093436 28093445 + Frame_Shift_Del DEL CAGAATGCCA CAGAATGCCA - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 CAGAATGCCA CAGAATGCCA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . ZSCAN16 NM_025231 exon2 c.214_223del p.72_75del . . 123.0 29.0 177.0 0.0 . 24 . . Atlas-Indel,Pindel GDNF 2668 hgsc.bcm.edu hg19 5 37834855 37834855 + Frame_Shift_Del DEL T T - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . GDNF NM_001190469 exon2 c.96delC p.H32fs . . 187.0 47.0 209.0 0.0 . 56 . . Atlas-Indel,Pindel RAI14 26064 hgsc.bcm.edu hg19 5 34823606 34823607 + Frame_Shift_Del DEL GA GA - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . RAI14 NM_001145525 exon17 c.1667_1668del p.556_556del . . 142.0 52.0 133.0 0.0 . 100 . . Atlas-Indel,Pindel NUAK2 81788 hgsc.bcm.edu hg19 1 205290603 205290626 + In_Frame_Del DEL GGTGCCGCAGGTTGTGCTTGTGGT GGTGCCGCAGGTTGTGCTTGTGGT - novel TCGA-5C-A9VH-01A-11D-A36X-10 TCGA-5C-A9VH-10A-01D-A370-10 GGTGCCGCAGGTTGTGCTTGTGGT GGTGCCGCAGGTTGTGCTTGTGGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 44e358dc-cbf5-4177-89a4-3d0d0fe2ff38 b56ae97e-c498-4223-a583-2b86e313f4bb . NUAK2 NM_030952 exon1 c.132_155del p.44_52del . . 147.0 12.0 148.0 0.0 . 107 . . Pindel