Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm DNAJB4 11080 hgsc.bcm.edu hg19 1 78479088 78479088 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . DNAJB4 NM_007034 exon2 c.G565A p.D189N AACGCTGATGGAA . 108.0 46.0 59.0 0.0 . 30 . . Atlas-SNP BCAN 63827 hgsc.bcm.edu hg19 1 156618360 156618360 + Missense_Mutation SNP G G C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . BCAN NM_198427 exon6 c.G770C p.G257A ACCCAGGAGAACT . 85.0 32.0 75.0 0.0 . 174 . . Atlas-SNP CD244 51744 hgsc.bcm.edu hg19 1 160801203 160801203 + Missense_Mutation SNP T T G rs146201991 alternate_allele TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CD244 NM_001166663 exon9 c.A1047C p.Q349H TTTAGGTTGACTC . 115.0 17.0 74.0 0.0 . 77 . T|1.000;C|0.000 Atlas-SNP LRRN2 10446 hgsc.bcm.edu hg19 1 204588961 204588961 + Missense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . LRRN2 NM_006338 exon3 c.G160T p.D54Y TGCAGTCCACAGT . 83.0 36.0 80.0 0.0 . 81 . . Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207739189 207739189 + Silent SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CR1 NM_000651 exon24 c.A3873G p.Q1291Q ATTTCAATTAAAA . 525.0 218.0 379.0 0.0 . 354 . . Atlas-SNP SLC30A1 7779 hgsc.bcm.edu hg19 1 211749145 211749145 + Missense_Mutation SNP T T A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SLC30A1 NM_021194 exon2 c.A1109T p.H370L AATTCATGAACTT . 60.0 25.0 39.0 0.0 . 27 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216420124 216420124 + Missense_Mutation SNP T T A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . USH2A NM_007123 exon13 c.A2612T p.K871I CCTAATTTGCAAG . 236.0 86.0 157.0 0.0 . 1168 . . Atlas-SNP SOS1 6654 hgsc.bcm.edu hg19 2 39213099 39213099 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SOS1 NM_005633 exon23 c.C3868T p.P1290S CAGGCGGCCCAGC . 536.0 206.0 426.0 0.0 . 134 . . Atlas-SNP GPR75 10936 hgsc.bcm.edu hg19 2 54081699 54081699 + Silent SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . GPR75 NM_006794 exon2 c.G195A p.L65L GAAGGACAAGAAG . 230.0 96.0 174.0 0.0 . 55 . . Atlas-SNP NCKAP1 10787 hgsc.bcm.edu hg19 2 183847561 183847561 + Missense_Mutation SNP T T C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . NCKAP1 NM_205842 exon13 c.A1214G p.D405G ATAAAGTCGTCTG . 208.0 93.0 109.0 0.0 . 105 . . Atlas-SNP SPEG 10290 hgsc.bcm.edu hg19 2 220354314 220354314 + Silent SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SPEG NM_005876 exon36 c.G8574A p.A2858A GCCAGCGGAGCCC . 109.0 34.0 88.0 0.0 . 272 . . Atlas-SNP PTPN23 25930 hgsc.bcm.edu hg19 3 47453376 47453376 + Missense_Mutation SNP A A T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PTPN23 NM_015466 exon21 c.A3992T p.E1331V ATGTGGAGCGCGT . 226.0 93.0 169.0 0.0 . 85 . . Atlas-SNP USP19 10869 hgsc.bcm.edu hg19 3 49153563 49153563 + Missense_Mutation SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . USP19 NM_001199160 exon10 c.G1388A p.C463Y GTGAAACAGAAGG . 177.0 80.0 100.0 0.0 . 158 . . Atlas-SNP TF 7018 hgsc.bcm.edu hg19 3 133476713 133476713 + Missense_Mutation SNP T T C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 .,3 TF NM_001063 exon8 c.T971C p.V324A TAAAAGTCCCCCC . 151.0 52.0 100.0 0.0 . 116 . . Atlas-SNP PAK2 5062 hgsc.bcm.edu hg19 3 196509495 196509495 + Splice_Site SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PAK2 . . . . AATTCCAGGCCAT . 124.0 6.0 80.0 0.0 . 113 . . Atlas-SNP G3BP2 9908 hgsc.bcm.edu hg19 4 76579227 76579227 + Silent SNP A A C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . G3BP2 NM_012297 exon8 c.T765G p.P255P ACTAGGAGGCAGG . 43.0 29.0 57.0 0.0 . 52 . . Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85711036 85711036 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . WDFY3 NM_014991 exon22 c.C3512T p.S1171L TAAAATGAGGACT . 113.0 82.0 139.0 1.0 . 314 . . Atlas-SNP MAD2L1 4085 hgsc.bcm.edu hg19 4 120982128 120982128 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . MAD2L1 NM_002358 exon4 c.C346A p.P116T CTCTGGGTGCACT . 156.0 62.0 113.0 0.0 . 17 . . Atlas-SNP SPEF2 79925 hgsc.bcm.edu hg19 5 35793440 35793440 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SPEF2 NM_024867 exon32 c.G4734T p.M1578I GTATATGCAGGTT . 202.0 71.0 161.0 0.0 . 324 . . Atlas-SNP SLC38A9 153129 hgsc.bcm.edu hg19 5 54952566 54952566 + Missense_Mutation SNP A A C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SLC38A9 NM_173514 exon9 c.T734G p.L245R GTACTCAGTATAG . 107.0 38.0 86.0 0.0 . 50 . . Atlas-SNP CDKN1A 1026 hgsc.bcm.edu hg19 6 36652024 36652024 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 CDKN1A,bladder,carcinoma,0,2 CDKN1A NM_001220778 exon2 c.G146T p.W49L AGCGATGGAACTT . 78.0 44.0 32.0 0.0 . 27 . . Atlas-SNP KLHL32 114792 hgsc.bcm.edu hg19 6 97562045 97562045 + Missense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . KLHL32 NM_052904 exon7 c.C1014A p.H338Q GAGCCACCATTGT . 81.0 25.0 43.0 0.0 . 85 . . Atlas-SNP LAMA2 3908 hgsc.bcm.edu hg19 6 129571345 129571345 + Missense_Mutation SNP T T C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . LAMA2 NM_000426 exon13 c.T1871C p.M624T AGCTTATGATTAT . 97.0 60.0 53.0 0.0 . 481 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82784756 82784756 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PCLO NM_014510 exon2 c.C1201A p.P401T GAGCTGGAGTCTT . 209.0 73.0 145.0 0.0 . 1506 . . Atlas-SNP TAS2R41 259287 hgsc.bcm.edu hg19 7 143175217 143175217 + Silent SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . TAS2R41 NM_176883 exon1 c.C252T p.F84F ACAGTTCTTCCAT . 91.0 11.0 81.0 0.0 . 43 . . Atlas-SNP KIF13B 23303 hgsc.bcm.edu hg19 8 28971063 28971063 + Missense_Mutation SNP G G C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . KIF13B NM_015254 exon32 c.C3847G p.Q1283E GACTCTGTGCAAA . 60.0 19.0 30.0 0.0 . 192 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113668402 113668402 + Silent SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CSMD3 NM_198123 exon18 c.T2985C p.G995G CTTGAAACCATTA . 115.0 37.0 72.0 0.0 . 2325 . . Atlas-SNP PTK2 5747 hgsc.bcm.edu hg19 8 141684416 141684416 + Missense_Mutation SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PTK2 NM_005607 exon29 c.G2756A p.S919N TTGTAGCTGTCAG . 76.0 29.0 75.0 0.0 . 311 . . Atlas-SNP FAM83H 286077 hgsc.bcm.edu hg19 8 144808725 144808725 + Missense_Mutation SNP A A C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . FAM83H NM_198488 exon5 c.T2906G p.L969R TGCCTAAGACGCA . 59.0 24.0 34.0 0.0 . 68 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039826 2039826 + Missense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SMARCA2 NM_139045 exon4 c.C716A p.P239Q AGCAGCCGCAGCA . 49.0 5.0 57.0 0.0 . 313 . . Atlas-SNP LRRC19 64922 hgsc.bcm.edu hg19 9 26995539 26995539 + Nonsense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . LRRC19 NM_022901 exon5 c.G1093T p.E365X ATAATTCATGGAT . 92.0 39.0 56.0 0.0 . 24 . . Atlas-SNP C9orf85 138241 hgsc.bcm.edu hg19 9 74586499 74586499 + Silent SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . C9orf85 NM_182505 exon3 c.C288T p.C96C AGTTTGCGCAAAA . 65.0 33.0 48.0 0.0 . 28 . . Atlas-SNP ORM1 5004 hgsc.bcm.edu hg19 9 117086007 117086007 + Missense_Mutation SNP A A T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ORM1 NM_000607 exon2 c.A179T p.Q60L CGGTTCAGGAGAT . 353.0 156.0 222.0 0.0 . 20 . . Atlas-SNP ENG 2022 hgsc.bcm.edu hg19 9 130587248 130587248 + Silent SNP A A T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ENG NM_001114753 exon7 c.T822A p.T274T TTCTCCAGTGGTC . 40.0 17.0 34.0 0.0 . 44 . . Atlas-SNP WAPAL 23063 hgsc.bcm.edu hg19 10 88259978 88259978 + Missense_Mutation SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . WAPAL NM_015045 exon3 c.G1022A p.G341D CTTACACCCCCTT . 69.0 46.0 67.0 0.0 . 81 . . Atlas-SNP ABCC8 6833 hgsc.bcm.edu hg19 11 17418492 17418492 + Missense_Mutation SNP C C A rs138642224 bycluster;byfrequency;alternate_allele TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ABCC8 NM_000352 exon33 c.G4090T p.V1364F CATTGACGTGCTT . 195.0 78.0 135.0 0.0 . 170 . C|0.999;T|0.001 Atlas-SNP AGBL2 79841 hgsc.bcm.edu hg19 11 47712149 47712149 + Silent SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . AGBL2 NM_024783 exon10 c.G1110A p.G370G CTGCTGCCCATCA . 216.0 97.0 157.0 0.0 . 73 . . Atlas-SNP ADAMTS15 170689 hgsc.bcm.edu hg19 11 130343256 130343256 + Missense_Mutation SNP T T G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ADAMTS15 NM_139055 exon8 c.T2393G p.F798C ACTCCTTCTATCT . 150.0 74.0 122.0 0.0 . 103 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2558277 2558277 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CACNA1C NM_001129831 exon4 c.G613T p.V205L GTGGTTGTGGGGT . 97.0 60.0 118.0 0.0 . 1023 . . Atlas-SNP ATF7IP 55729 hgsc.bcm.edu hg19 12 14650961 14650961 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ATF7IP NM_018179 exon15 c.G3767T p.C1256F CTTTCTGTGATCC . 56.0 38.0 85.0 0.0 . 136 . . Atlas-SNP NCKAP5L 57701 hgsc.bcm.edu hg19 12 50190101 50190101 + Missense_Mutation SNP C C G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . NCKAP5L NM_001037806 exon8 c.G1542C p.E514D CGCCCCCTCTGGG . 126.0 52.0 85.0 0.0 . 142 . . Atlas-SNP FAIM2 23017 hgsc.bcm.edu hg19 12 50291319 50291319 + Silent SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . FAIM2 NM_012306 exon4 c.G363A p.V121V GAGAGCCACGACA . 178.0 69.0 136.0 0.0 . 32 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124915190 124915190 + Missense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . NCOR2 NM_006312 exon11 c.G1026T p.K342N GCGCTGCTTGCGG . 85.0 43.0 63.0 0.0 . 475 . . Atlas-SNP CYSLTR2 57105 hgsc.bcm.edu hg19 13 49281716 49281716 + Missense_Mutation SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CYSLTR2 NM_020377 exon1 c.A763G p.I255V TTGATCATCTTCT . 49.0 15.0 25.0 0.0 . 55 . . Atlas-SNP CLYBL 171425 hgsc.bcm.edu hg19 13 100515304 100515304 + Missense_Mutation SNP A A C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CLYBL NM_206808 exon4 c.A498C p.L166F GAATTTAATCCCT . 65.0 20.0 38.0 0.0 . 48 . . Atlas-SNP ING1 3621 hgsc.bcm.edu hg19 13 111371870 111371870 + Missense_Mutation SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ING1 NM_005537 exon2 c.A860G p.K287R CTGACAAGCCCAA . 55.0 4.0 43.0 0.0 . 106 . . Atlas-SNP PRKCH 5583 hgsc.bcm.edu hg19 14 61909960 61909960 + Missense_Mutation SNP C C G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PRKCH NM_006255 exon3 c.C559G p.H187D TGCTCTCACTGCA . 133.0 71.0 85.0 0.0 . 89 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34109151 34109151 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . RYR3 NM_001036 exon75 c.G10591T p.D3531Y GTACAGGATTTGG . 128.0 42.0 95.0 0.0 . 760 . . Atlas-SNP C15orf55 256646 hgsc.bcm.edu hg19 15 34640560 34640560 + Missense_Mutation SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . C15orf55 NM_175741 exon2 c.C407T p.A136V TGACAGCATCTAA . 112.0 39.0 117.0 0.0 . 110 . . Atlas-SNP DUOX1 53905 hgsc.bcm.edu hg19 15 45440496 45440496 + Missense_Mutation SNP G G C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . DUOX1 NM_017434 exon22 c.G2669C p.C890S ACAACTGCCTGTC . 147.0 68.0 126.0 0.0 . 125 . . Atlas-SNP KIAA1199 57214 hgsc.bcm.edu hg19 15 81234212 81234212 + Missense_Mutation SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . KIAA1199 NM_018689 exon25 c.G3430T p.A1144S CTGAAAGCTCAGA . 78.0 30.0 54.0 0.0 . 118 . . Atlas-SNP SLCO3A1 28232 hgsc.bcm.edu hg19 15 92459662 92459662 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SLCO3A1 NM_013272 exon2 c.G620A p.R207Q ACGTGCGGAGGAA . 122.0 50.0 109.0 0.0 . 84 . . Atlas-SNP VWA3A 146177 hgsc.bcm.edu hg19 16 22120822 22120822 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . VWA3A NM_173615 exon7 c.G503A p.G168E TCAAAGGGGCCAG . 55.0 18.0 33.0 0.0 . 115 . . Atlas-SNP PLK1 5347 hgsc.bcm.edu hg19 16 23700573 23700573 + Missense_Mutation SNP G G C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . PLK1 NM_005030 exon8 c.G1285C p.D429H CTCTGTGATAACA . 226.0 29.0 135.0 0.0 . 67 . . Atlas-SNP GLG1 2734 hgsc.bcm.edu hg19 16 74566050 74566050 + Missense_Mutation SNP G G A rs201232267 TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . GLG1 NM_001145667 exon2 c.C440T p.P147L TTTTCAGGCTAGA . 147.0 6.0 103.0 0.0 . 106 . . Atlas-SNP WDR59 79726 hgsc.bcm.edu hg19 16 74943789 74943789 + Silent SNP T T C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . WDR59 NM_030581 exon15 c.A1416G p.K472K CTTCACTTTCTGC . 203.0 95.0 123.0 0.0 . 66 . . Atlas-SNP MON1B 22879 hgsc.bcm.edu hg19 16 77228317 77228317 + Silent SNP G G T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . MON1B NM_014940 exon4 c.G561T p.R187R GCTGCGGGGGGAG . 90.0 37.0 46.0 0.0 . 55 . . Atlas-SNP SDR42E1 93517 hgsc.bcm.edu hg19 16 82033315 82033315 + Missense_Mutation SNP T T C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SDR42E1 NM_145168 exon3 c.A583G p.R195G GGTGTCTTTGTTC . 128.0 6.0 105.0 0.0 . 26 . . Atlas-SNP NOS2 4843 hgsc.bcm.edu hg19 17 26110007 26110007 + Missense_Mutation SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . NOS2 NM_000625 exon6 c.C593T p.P198L CAGCGTGGGGCAT . 318.0 116.0 233.0 0.0 . 113 . . Atlas-SNP CISD3 284106 hgsc.bcm.edu hg19 17 36889706 36889706 + Missense_Mutation SNP T T G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CISD3 NM_001136498 exon4 c.T382G p.X128G CCACTCTGAGGGG . 53.0 29.0 35.0 0.0 . 12 . . Atlas-SNP SCN4A 6329 hgsc.bcm.edu hg19 17 62020305 62020305 + Missense_Mutation SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . SCN4A NM_000334 exon23 c.T4169C p.M1390T AAGATCATGTTGA . 394.0 152.0 359.0 0.0 . 205 . . Atlas-SNP GPR142 350383 hgsc.bcm.edu hg19 17 72363763 72363763 + Missense_Mutation SNP C C T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . GPR142 NM_181790 exon1 c.C119T p.S40F TGGTGTCCCATGC . 108.0 34.0 90.0 0.0 . 74 . . Atlas-SNP RHBDF2 79651 hgsc.bcm.edu hg19 17 74473344 74473344 + Missense_Mutation SNP A A T novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . RHBDF2 NM_024599 exon8 c.T925A p.S309T GGGGGGACTCAAA . 70.0 22.0 49.0 0.0 . 57 . . Atlas-SNP MEX3C 51320 hgsc.bcm.edu hg19 18 48723394 48723394 + Silent SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . MEX3C NM_016626 exon1 c.G297T p.G99G CGGGGCCCCGGGC . 14.0 7.0 12.0 0.0 . 77 . . Atlas-SNP MAST1 22983 hgsc.bcm.edu hg19 19 12978549 12978549 + Missense_Mutation SNP G G C novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . MAST1 NM_014975 exon20 c.G2324C p.R775P GCAAGCGATTCTC . 55.0 13.0 41.0 0.0 . 214 . . Atlas-SNP GPI 2821 hgsc.bcm.edu hg19 19 34887542 34887542 + Silent SNP C C A rs373085760 alternate_allele TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . GPI NM_001184722 exon14 c.C1282A p.R428R CCCATACGGAAGG . 109.0 32.0 74.0 0.0 . 63 . . Atlas-SNP HIF3A 64344 hgsc.bcm.edu hg19 19 46812017 46812017 + Silent SNP G G A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . HIF3A NM_152795 exon5 c.G546A p.K182K CCTCAAGGCGGCC . 67.0 22.0 43.0 0.0 . 154 . . Atlas-SNP C20orf26 26074 hgsc.bcm.edu hg19 20 20177325 20177325 + Missense_Mutation SNP C C T rs142308308 TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . C20orf26 NM_015585 exon16 c.C1702T p.R568W ATTTTCCGGCACT . 199.0 113.0 108.0 0.0 . 188 . C|1.000;T|0.000 Atlas-SNP ADAMTS1 9510 hgsc.bcm.edu hg19 21 28211905 28211905 + Splice_Site SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ADAMTS1 NM_006988 exon8 c.2028+1G>T . GAACTACCTTGGG . 27.0 12.0 27.0 0.0 . 131 . . Atlas-SNP KRTAP13-4 284827 hgsc.bcm.edu hg19 21 31802993 31802993 + Missense_Mutation SNP C C A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . KRTAP13-4 NM_181600 exon1 c.C400A p.P134T TGCTACCCAAACT . 193.0 92.0 127.0 0.0 . 46 . . Atlas-SNP C21orf59 56683 hgsc.bcm.edu hg19 21 33976524 33976524 + Missense_Mutation SNP C C A rs367724246 alternate_allele TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . C21orf59 NM_021254 exon4 c.G445T p.A149S TCACCGCGCCTCG . 172.0 78.0 108.0 0.0 . 11 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70604840 70604840 + Missense_Mutation SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . TAF1 NM_004606 exon14 c.A2227G p.T743A GGGGAAACTGTTT . 104.0 82.0 74.0 0.0 . 439 . . Atlas-SNP AFF2 2334 hgsc.bcm.edu hg19 X 148037577 148037577 + Missense_Mutation SNP A A G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . AFF2 NM_002025 exon11 c.A2002G p.R668G CCACCAAGAGGCC . 50.0 42.0 30.0 0.0 . 679 . . Atlas-SNP ROCK1 6093 hgsc.bcm.edu hg19 18 18629104 18629105 + Frame_Shift_Ins INS - - A rs35810558 TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 .,1 ROCK1 NM_005406 exon4 c.363_364insT p.F121fs . . 127.0 13.0 83.0 0.0 . 162 . . Atlas-INDEL ZNF638 27332 hgsc.bcm.edu hg19 2 71592562 71592563 + Frame_Shift_Ins INS - - A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . ZNF638 NM_001252612 exon6 c.1721_1722insA p.R574fs . . 65.0 23.0 31.0 0.0 . 179 . . Atlas-INDEL TF 7018 hgsc.bcm.edu hg19 3 133476711 133476712 + Frame_Shift_Ins INS - - G novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . TF NM_001063 exon8 c.969_970insG p.K323fs . . 153.0 54.0 99.0 0.0 . 116 . . Atlas-INDEL PTEN 5728 hgsc.bcm.edu hg19 10 89720811 89720812 + Frame_Shift_Ins INS - - A novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 .,1 PTEN NM_000314 exon8 c.962_963insA p.T321fs . . 170.0 110.0 171.0 0.0 . 3652 . . Atlas-INDEL ADPRM 56985 hgsc.bcm.edu hg19 17 10614393 10614393 + Frame_Shift_Del DEL T T - novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . . NM_020233 exon4 c.960delG p.M320fs . . 63.0 39.0 66.0 0.0 . . . . Atlas-Indel,Pindel CSNK2A1 1457 hgsc.bcm.edu hg19 20 489179 489184 + In_Frame_Del DEL GGCACG GGCACG - novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 GGCACG GGCACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . CSNK2A1 NM_001895 exon2 c.13_18del p.5_6del . . 199.0 37.0 141.0 0.0 . 36 . . Atlas-Indel,Pindel C11orf35 256329 hgsc.bcm.edu hg19 11 556881 556881 + Frame_Shift_Del DEL G G - novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . C11orf35 NM_173573 exon8 c.931delG p.E311fs . . 37.0 13.0 25.0 0.0 . 22 . . Atlas-INDEL MUSK 4593 hgsc.bcm.edu hg19 9 113550088 113550088 + Frame_Shift_Del DEL T T - novel TCGA-BD-A2L6-01A-11D-A20W-10 TCGA-BD-A2L6-11A-21D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 45885dc7-e1ae-4db7-a384-59865f009277 c37989ed-705e-458e-a38d-819266a434f5 . MUSK NM_005592 exon13 c.1896delA p.E632fs . . 124.0 52.0 89.0 0.0 . 112 . . Atlas-Indel,Pindel