Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA2013 90231 hgsc.bcm.edu hg19 1 11983301 11983301 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KIAA2013 NM_138346 exon2 c.T1279C p.S427P GGTCAGAGAGCTG . 89.0 4.0 161.0 0.0 . 25 . . Atlas-SNP IGSF21 84966 hgsc.bcm.edu hg19 1 18691796 18691796 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IGSF21 NM_032880 exon6 c.A620G p.Q207R CCCTACAGGACAG . 68.0 4.0 135.0 0.0 . 87 . . Atlas-SNP TAS1R2 80834 hgsc.bcm.edu hg19 1 19186095 19186095 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TAS1R2 NM_152232 exon1 c.G60C p.E20D AGCCGGCTCAGCC . 135.0 90.0 186.0 0.0 . 134 . . Atlas-SNP SRRM1 10250 hgsc.bcm.edu hg19 1 24997900 24997900 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SRRM1 NM_005839 exon16 c.A2424G p.G808G AGGTGGAAAGAAA . 66.0 4.0 100.0 0.0 . 81 . . Atlas-SNP SLFNL1 200172 hgsc.bcm.edu hg19 1 41481866 41481866 + Missense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLFNL1 NM_001168247 exon6 c.A1136T p.K379M TTCATCTTCTCTT . 176.0 12.0 138.0 0.0 . 37 . . Atlas-SNP CCDC30 728621 hgsc.bcm.edu hg19 1 43076653 43076653 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC30 NM_001080850 exon10 c.T1388C p.V463A AGCATGTCAAAAG . 65.0 4.0 82.0 0.0 . 78 . . Atlas-SNP WDR65 149465 hgsc.bcm.edu hg19 1 43649297 43649297 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WDR65 NM_152498 exon4 c.T510C p.C170C GGTGTGTGTCACT . 119.0 5.0 87.0 0.0 . 76 . . Atlas-SNP TESK2 10420 hgsc.bcm.edu hg19 1 45811552 45811552 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TESK2 NM_007170 exon10 c.A994G p.R332G TACCCCTGGCTGT . 110.0 5.0 104.0 0.0 . 60 . . Atlas-SNP DMBX1 127343 hgsc.bcm.edu hg19 1 46976674 46976674 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DMBX1 NM_147192 exon3 c.A416G p.Q139R AGCTCCAGAAGCA . 117.0 43.0 124.0 0.0 . 50 . . Atlas-SNP CDKN2C 1031 hgsc.bcm.edu hg19 1 51436144 51436144 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDKN2C NM_001262 exon2 c.A104G p.N35S CACAAAATGGATT . 94.0 4.0 89.0 0.0 . 24 . . Atlas-SNP NRD1 4898 hgsc.bcm.edu hg19 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NRD1 NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . 233.0 36.0 235.0 0.0 . 89 . T|0.024;A|0.976 Atlas-SNP ACADM 34 hgsc.bcm.edu hg19 1 76216192 76216192 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ACADM NM_001127328 exon10 c.T918C p.Y306Y CAAGTATGCCCTG . 86.0 4.0 75.0 0.0 . 50 . . Atlas-SNP GBP5 115362 hgsc.bcm.edu hg19 1 89728392 89728392 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GBP5 NM_052942 exon10 c.T1439C p.L480P TCTGTGAGAGCCT . 75.0 4.0 102.0 0.0 . 65 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103491481 103491481 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af COL11A1,NS,carcinoma,0,1 COL11A1 NM_080629 exon6 c.A808G p.M270V TCCTCATCTTCTT . 35.0 2.0 63.0 0.0 . 972 . . Atlas-SNP ADORA3 140 hgsc.bcm.edu hg19 1 112033360 112033360 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af ADORA3_ENST00000369716,NS,carcinoma,0,1 ADORA3 NM_020683 exon2 c.G375A p.G125G AATGCACCCAGGG . 43.0 2.0 29.0 0.0 . 104 . . Atlas-SNP OLFML2B 25903 hgsc.bcm.edu hg19 1 161989875 161989875 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OLFML2B NM_015441 exon2 c.G272T p.R91M TTGATCCTCTGGC . 223.0 49.0 127.0 0.0 . 114 . . Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 179972310 179972310 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CEP350 NM_014810 exon7 c.T1020C p.G340G ATTAGGTTTCAAC . 117.0 5.0 68.0 0.0 . 418 . . Atlas-SNP PLA2G4A 5321 hgsc.bcm.edu hg19 1 186919790 186919790 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af PLA2G4A,NS,carcinoma,0,1 PLA2G4A NM_024420 exon13 c.A1266G p.E422E CACAGAAAATATT . 73.0 3.0 38.0 0.0 . 125 . . Atlas-SNP ZBTB41 360023 hgsc.bcm.edu hg19 1 197169179 197169179 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZBTB41 NM_194314 exon1 c.T425C p.F142S TAAAGAAATTCAA . 83.0 4.0 42.0 0.0 . 116 . . Atlas-SNP PIK3C2B 5287 hgsc.bcm.edu hg19 1 204401382 204401382 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PIK3C2B NM_002646 exon28 c.C4101G p.I1367M ATCACTGATTCGG . 360.0 81.0 184.0 0.0 . 142 . . Atlas-SNP WDR26 80232 hgsc.bcm.edu hg19 1 224621626 224621626 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WDR26 NM_001115113 exon1 c.C182T p.P61L GCGGAAGGCAGGA . 4.0 4.0 1.0 0.0 . 104 . . Atlas-SNP ITPKB 3707 hgsc.bcm.edu hg19 1 226923808 226923808 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ITPKB NM_002221 exon2 c.G1352A p.G451D AGCAAGCCCAGCG . 84.0 4.0 55.0 0.0 . 158 . . Atlas-SNP APOB 338 hgsc.bcm.edu hg19 2 21250701 21250701 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . APOB NM_000384 exon14 c.A2066G p.E689G CTTACCTCGATGA . 98.0 4.0 92.0 0.0 . 761 . . Atlas-SNP PPM1G 5496 hgsc.bcm.edu hg19 2 27608639 27608639 + Missense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPM1G NM_177983 exon4 c.A384T p.K128N TTTTTCTTTTTCA . 166.0 26.0 149.0 0.0 . 42 . . Atlas-SNP PPM1G 5496 hgsc.bcm.edu hg19 2 27608641 27608641 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPM1G NM_177983 exon4 c.A382G p.K128E TTTCTTTTTCATC . 168.0 25.0 152.0 0.0 . 42 . . Atlas-SNP LHCGR 3973 hgsc.bcm.edu hg19 2 48915345 48915345 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LHCGR NM_000233 exon11 c.A1591G p.I531V TCAGGATGGTTAA . 87.0 4.0 113.0 0.0 . 154 . . Atlas-SNP EFEMP1 2202 hgsc.bcm.edu hg19 2 56145028 56145028 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EFEMP1 NM_001039349 exon4 c.G289A p.A97T TGGTTGCCCCTGA . 199.0 78.0 217.0 0.0 . 81 . . Atlas-SNP DNAH6 1768 hgsc.bcm.edu hg19 2 84806671 84806671 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DNAH6 NM_001370 exon14 c.T2097C p.P699P GCTTCCTCGTCAA . 90.0 4.0 81.0 0.0 . 194 . . Atlas-SNP CLASP1 23332 hgsc.bcm.edu hg19 2 122159109 122159109 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CLASP1 NM_015282 exon27 c.T2876C p.V959A TTTTGAACTTTTG . 122.0 5.0 95.0 0.0 . 135 . . Atlas-SNP UGGT1 56886 hgsc.bcm.edu hg19 2 128930206 128930206 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . UGGT1 NM_020120 exon29 c.A3164G p.K1055R TTGCTAAGGGTCC . 97.0 4.0 83.0 0.0 . 126 . . Atlas-SNP LRP1B 53353 hgsc.bcm.edu hg19 2 141092035 141092035 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LRP1B NM_018557 exon79 c.A12210G p.L4070L TCTCTGTAAGTTC . 252.0 94.0 288.0 0.0 . 1315 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179628973 179628973 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TTN NM_001267550 exon43 c.A10045G p.T3349A GCGGGGTGATGAT . 93.0 6.0 123.0 0.0 . 18412 . . Atlas-SNP TMEFF2 23671 hgsc.bcm.edu hg19 2 193056689 193056689 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMEFF2 NM_016192 exon2 c.T199C p.F67L AGAGGAAGAGATC . 91.0 4.0 86.0 0.0 . 54 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196750895 196750895 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DNAH7 NM_018897 exon34 c.A5508G p.R1836R ATCATTTCTCTCC . 100.0 4.0 58.0 0.0 . 512 . . Atlas-SNP STK17B 9262 hgsc.bcm.edu hg19 2 197021354 197021354 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STK17B NM_004226 exon3 c.A144G p.R48R ACATTGTCTAACC . 98.0 4.0 102.0 0.0 . 28 . . Atlas-SNP SGOL2 151246 hgsc.bcm.edu hg19 2 201437542 201437542 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SGOL2 NM_001160046 exon7 c.A2473G p.I825V AACCAAATATATG . 119.0 5.0 116.0 0.0 . 126 . . Atlas-SNP CYP27A1 1593 hgsc.bcm.edu hg19 2 219646908 219646908 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CYP27A1 NM_000784 exon1 c.G3C p.M1I ACCCATGGCTGCG . 10.0 6.0 3.0 0.0 . 52 . . Atlas-SNP NCL 4691 hgsc.bcm.edu hg19 2 232325414 232325414 + Missense_Mutation SNP T T A rs199689485 bycluster TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NCL NM_005381 exon4 c.A777T p.E259D ATCATCTTCATCA . 206.0 18.0 209.0 0.0 . 80 . . Atlas-SNP GIGYF2 26058 hgsc.bcm.edu hg19 2 233684562 233684562 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GIGYF2 NM_001103147 exon23 c.A2459G p.E820G AGCGGGAGCAAGA . 87.0 6.0 79.0 0.0 . 288 . . Atlas-SNP COL6A3 1293 hgsc.bcm.edu hg19 2 238244875 238244875 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,7 COL6A3 NM_004369 exon40 c.T8868C p.A2956A AGCAGCAGCGGGG . 65.0 3.0 73.0 0.0 . 608 . . Atlas-SNP CAPN10 11132 hgsc.bcm.edu hg19 2 241534647 241534647 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CAPN10 NM_023085 exon7 c.G1204T p.D402Y GTGGGTGACAGTC . 293.0 72.0 222.0 0.0 . 105 . . Atlas-SNP NEU4 129807 hgsc.bcm.edu hg19 2 242756278 242756278 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NEU4 NM_001167599 exon3 c.G430T p.D144Y AGCCGTGACGCCG . 38.0 18.0 2.0 0.0 . 39 . . Atlas-SNP TRNT1 51095 hgsc.bcm.edu hg19 3 3189269 3189269 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TRNT1 NM_182916 exon7 c.T938C p.L313S TGAGGTTGAAGAT . 102.0 5.0 148.0 0.0 . 34 . . Atlas-SNP SRGAP3 9901 hgsc.bcm.edu hg19 3 9106232 9106232 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SRGAP3 NM_014850 exon5 c.A520G p.S174G TGATGCTCTCTGC . 101.0 5.0 180.0 0.0 . 146 . . Atlas-SNP ZNF860 344787 hgsc.bcm.edu hg19 3 32031946 32031946 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF860 NM_001137674 exon2 c.T1375C p.C459R AATGAGTGTGGCA . 33.0 4.0 49.0 0.0 . 96 . . Atlas-SNP ZNF662 389114 hgsc.bcm.edu hg19 3 42954744 42954744 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF662 NM_207404 exon4 c.A203G p.E68G TGGAAGAGCCATT . 62.0 4.0 127.0 0.0 . 112 . . Atlas-SNP FYCO1 79443 hgsc.bcm.edu hg19 3 46021198 46021198 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FYCO1 NM_024513 exon4 c.A287G p.E96G CTTACCTCTGAGA . 125.0 5.0 210.0 0.0 . 115 . . Atlas-SNP P4HTM 54681 hgsc.bcm.edu hg19 3 49041657 49041657 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . P4HTM NM_177938 exon5 c.A851G p.E284G AGGGTGAGGGTGC . 35.0 4.0 96.0 0.0 . 71 . . Atlas-SNP FAM208A 23272 hgsc.bcm.edu hg19 3 56667646 56667646 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM208A NM_001112736 exon18 c.T3173C p.M1058T CGTTTCATCTTCT . 26.0 4.0 38.0 0.0 . 113 . . Atlas-SNP DNAH12 201625 hgsc.bcm.edu hg19 3 57343779 57343779 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DNAH12 NM_178504 exon53 c.T8396C p.L2799P TGGGTGAGGAGCA . 93.0 4.0 150.0 0.0 . 182 . . Atlas-SNP SLMAP 7871 hgsc.bcm.edu hg19 3 57846497 57846497 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLMAP NM_007159 exon8 c.A759G p.T253T GACAACAGCCAAA . 115.0 5.0 158.0 0.0 . 46 . . Atlas-SNP TMF1 7110 hgsc.bcm.edu hg19 3 69079080 69079080 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMF1 NM_007114 exon11 c.A2480G p.Q827R GACATCTGAATTT . 77.0 4.0 132.0 0.0 . 77 . . Atlas-SNP CNTN3 5067 hgsc.bcm.edu hg19 3 74418520 74418520 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CNTN3 NM_020872 exon7 c.A766G p.I256V GAGGTATGGGACT . 81.0 4.0 184.0 0.0 . 174 . . Atlas-SNP PROS1 5627 hgsc.bcm.edu hg19 3 93611837 93611837 + Silent SNP A A G rs199469491 bycluster;by1000genomes;alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PROS1 NM_000313 exon10 c.T1095C p.N365N ATGTTCATTCTTA . 421.0 172.0 371.0 0.0 . 126 . A|0.999;C|0.001 Atlas-SNP OR5H6 79295 hgsc.bcm.edu hg19 3 97983495 97983495 + Missense_Mutation SNP A A C rs149984587 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OR5H6 NM_001005479 exon1 c.A367C p.T123P GTAACCACTGTAA . 126.0 6.0 125.0 0.0 . 89 . . Atlas-SNP HCLS1 3059 hgsc.bcm.edu hg19 3 121351335 121351335 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af HCLS1,NS,carcinoma,0,1 HCLS1 NM_005335 exon12 c.G1084C p.A362P GCTCTGCTTCGTA . 134.0 10.0 103.0 0.0 . 78 . . Atlas-SNP KLF15 28999 hgsc.bcm.edu hg19 3 126071499 126071499 + Silent SNP G G A rs376071138 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KLF15 NM_014079 exon2 c.C267T p.G89G GCCCCCGCCACTG . 130.0 60.0 64.0 0.0 . 40 . . Atlas-SNP PODXL2 50512 hgsc.bcm.edu hg19 3 127379378 127379378 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PODXL2 NM_015720 exon3 c.A507G p.E169E AGAGGAAGAGGAG . 72.0 4.0 68.0 0.0 . 53 . . Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129546658 129546658 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMCC1 NM_001017395 exon3 c.A564G p.G188G CGCAGTTCCCTCC . 80.0 5.0 58.0 0.0 . 105 . . Atlas-SNP PIK3R4 30849 hgsc.bcm.edu hg19 3 130449233 130449233 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PIK3R4 NM_014602 exon5 c.T1504C p.L502L TTTTTAACTGTAC . 86.0 4.0 85.0 0.0 . 145 . . Atlas-SNP SERPINI1 5274 hgsc.bcm.edu hg19 3 167506954 167506954 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SERPINI1 NM_005025 exon2 c.A38G p.Q13R TTCTGCAAAGTAT . 75.0 4.0 67.0 0.0 . 52 . . Atlas-SNP GOLIM4 27333 hgsc.bcm.edu hg19 3 167747641 167747641 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,1 GOLIM4 NM_014498 exon10 c.G1360C p.V454L TTGCCACCTGCTG . 67.0 7.0 75.0 0.0 . 71 . . Atlas-SNP KLHL24 54800 hgsc.bcm.edu hg19 3 183381420 183381420 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KLHL24 NM_017644 exon4 c.T1095C p.I365I TGACATTCTTGTT . 71.0 4.0 95.0 0.0 . 56 . . Atlas-SNP FBXL5 26234 hgsc.bcm.edu hg19 4 15629615 15629615 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FBXL5 NM_012161 exon7 c.A934G p.M312V TTTCCATTTGTGC . 82.0 4.0 86.0 0.0 . 52 . . Atlas-SNP CORIN 10699 hgsc.bcm.edu hg19 4 47685795 47685795 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CORIN NM_006587 exon7 c.G974A p.C325Y CCATCACACACAA . 67.0 4.0 60.0 0.0 . 154 . . Atlas-SNP FRYL 285527 hgsc.bcm.edu hg19 4 48545872 48545872 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FRYL NM_015030 exon44 c.T5544C p.V1848V GGAGAGAACATCA . 90.0 4.0 68.0 0.0 . 242 . . Atlas-SNP FIP1L1 81608 hgsc.bcm.edu hg19 4 54265931 54265931 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FIP1L1 NM_030917 exon10 c.A740G p.E247G AGAAAGAAACTGC . 87.0 5.0 108.0 0.0 . 60 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62936570 62936570 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LPHN3 NM_015236 exon23 c.G4354A p.G1452R AAAGATGGGACCC . 83.0 32.0 90.0 0.0 . 800 . . Atlas-SNP MTHFD2L 441024 hgsc.bcm.edu hg19 4 75023925 75023925 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MTHFD2L NM_001144978 exon1 c.A70G p.S24G GGCAGAAGCACAG . 101.0 5.0 36.0 0.0 . 41 . . Atlas-SNP ART3 419 hgsc.bcm.edu hg19 4 77003153 77003153 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ART3 NM_001130017 exon3 c.T246C p.T82T AAAGACTCAAATC . 61.0 4.0 62.0 0.0 . 34 . . Atlas-SNP SHROOM3 57619 hgsc.bcm.edu hg19 4 77663055 77663055 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SHROOM3 NM_020859 exon5 c.T3729C p.S1243S GTCATCTCCCGCC . 153.0 8.0 148.0 0.0 . 134 . . Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90844418 90844418 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MMRN1 NM_007351 exon4 c.A950G p.D317G GTGGTGACCCAGG . 123.0 5.0 118.0 0.0 . 174 . . Atlas-SNP GSTCD 79807 hgsc.bcm.edu hg19 4 106650634 106650634 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GSTCD NM_001031720 exon5 c.T1218C p.P406P TCTCCCTGCAGCA . 95.0 4.0 96.0 0.0 . 69 . . Atlas-SNP NAF1 92345 hgsc.bcm.edu hg19 4 164058390 164058390 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NAF1 NM_138386 exon6 c.A891G p.S297S TGCATCTGATCCC . 69.0 4.0 144.0 0.0 . 69 . . Atlas-SNP CEP44 80817 hgsc.bcm.edu hg19 4 175224972 175224972 + Missense_Mutation SNP A A G rs143573166 bycluster;alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CEP44 NM_001040157 exon5 c.A356G p.K119R TGAAAAAGCACAA . 96.0 4.0 166.0 0.0 . 35 . A|1.000;C|0.000 Atlas-SNP SORBS2 8470 hgsc.bcm.edu hg19 4 186544675 186544675 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af SORBS2,NS,haematopoietic_neoplasm,0,1 SORBS2 NM_001270771 exon16 c.C2196T p.S732S GCTTTCGGAGGAT . 45.0 2.0 59.0 0.0 . 300 . . Atlas-SNP CDH6 1004 hgsc.bcm.edu hg19 5 31305284 31305284 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDH6 NM_004932 exon7 c.T1003C p.L335L AAGCTCTTGGACT . 54.0 5.0 61.0 0.0 . 175 . . Atlas-SNP RANBP3L 202151 hgsc.bcm.edu hg19 5 36301506 36301506 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RANBP3L NM_001161429 exon1 c.C13T p.P5S TTCTTGGTATGGT . 75.0 4.0 86.0 0.0 . 41 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37183712 37183712 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C5orf42 NM_023073 exon26 c.A4571G p.K1524R TCTTCTTTCTTTG . 68.0 4.0 90.0 0.0 . 422 . . Atlas-SNP FBXO4 26272 hgsc.bcm.edu hg19 5 41941379 41941379 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af FBXO4,NS,carcinoma,0,1 FBXO4 NM_012176 exon7 c.G1160A p.R387K GTGCAAGATGATT . 97.0 4.0 112.0 0.0 . 42 . . Atlas-SNP ITGA1 3672 hgsc.bcm.edu hg19 5 52214692 52214692 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ITGA1 NM_181501 exon16 c.A2119G p.K707E GATGTGAAATTAA . 90.0 5.0 81.0 0.0 . 112 . . Atlas-SNP ADAMTS6 11174 hgsc.bcm.edu hg19 5 64466487 64466487 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ADAMTS6 NM_197941 exon24 c.G3201A p.Q1067Q TTCACACTGCTGC . 98.0 4.0 106.0 0.0 . 174 . . Atlas-SNP RASA1 5921 hgsc.bcm.edu hg19 5 86665661 86665661 + Missense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RASA1 NM_002890 exon12 c.T1642A p.F548I CAGCACTTTAGTG . 142.0 10.0 203.0 0.0 . 213 . . Atlas-SNP RIOK2 55781 hgsc.bcm.edu hg19 5 96514829 96514829 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RIOK2 NM_001159749 exon2 c.A135G p.K45K ACCATGTTTAAGG . 48.0 4.0 51.0 0.0 . 82 . . Atlas-SNP KLHL3 26249 hgsc.bcm.edu hg19 5 136963985 136963985 + Splice_Site SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af KLHL3,NS,carcinoma,0,1 KLHL3 NM_017415 exon14 c.1591+1G>T . TCATTACCTGCGT . 93.0 42.0 99.0 0.0 . 54 . . Atlas-SNP HBEGF 1839 hgsc.bcm.edu hg19 5 139725515 139725515 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HBEGF NM_001945 exon2 c.A201G p.A67A CAGATCTGCCTCT . 124.0 5.0 188.0 0.0 . 12 . . Atlas-SNP PCDHB8 56128 hgsc.bcm.edu hg19 5 140559337 140559337 + Silent SNP C C T rs374710779 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af PCDHB8,NS,carcinoma,0,1 PCDHB8 NM_019120 exon1 c.C1722T p.T574T CTGCACCGAGCTG . 99.0 4.0 23.0 0.0 . 199 . . Atlas-SNP HMGXB3 22993 hgsc.bcm.edu hg19 5 149390055 149390055 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HMGXB3 NM_014983 exon4 c.A694G p.T232A TACCAGACAAGCC . 99.0 4.0 124.0 0.0 . 31 . . Atlas-SNP HAVCR1 26762 hgsc.bcm.edu hg19 5 156479571 156479571 + Missense_Mutation SNP C C T rs183130208 bycluster TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HAVCR1 NM_001099414 exon4 c.G474A p.M158I AGTCGTCATTGGA . 242.0 25.0 3.0 0.0 . 84 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167689611 167689611 + Silent SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001122679 exon29 c.C8094G p.A2698A CACGGCCTGGGCC . 63.0 26.0 60.0 0.0 . . . . Atlas-SNP CAGE1 285782 hgsc.bcm.edu hg19 6 7366104 7366104 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CAGE1 NM_001170693 exon8 c.A2018G p.K673R CTATCTTTATGTT . 59.0 4.0 71.0 0.0 . 165 . . Atlas-SNP DSP 1832 hgsc.bcm.edu hg19 6 7580098 7580098 + Silent SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DSP NM_004415 exon23 c.C3675G p.S1225S GATATCCATGCAA . 91.0 39.0 116.0 0.0 . 306 . . Atlas-SNP ALDH5A1 7915 hgsc.bcm.edu hg19 6 24523152 24523152 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af ALDH5A1,colon,carcinoma,0,1 ALDH5A1 NM_170740 exon8 c.A1211G p.K404R TAGAAAAGGTAAG . 30.0 2.0 30.0 0.0 . 42 . . Atlas-SNP SKIV2L 6499 hgsc.bcm.edu hg19 6 31931312 31931312 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SKIV2L NM_006929 exon14 c.C1526T p.S509F TGGACTCCCGAGG . 102.0 5.0 136.0 0.0 . 97 . . Atlas-SNP NOTCH4 4855 hgsc.bcm.edu hg19 6 32187547 32187547 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NOTCH4 NM_004557 exon8 c.T1332C p.S444S ACAGGGACTTGGG . 118.0 5.0 151.0 0.0 . 201 . . Atlas-SNP PTK7 5754 hgsc.bcm.edu hg19 6 43097478 43097478 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PTK7 NM_001270398 exon3 c.T405C p.G135G GGCAGGTCCTGTG . 85.0 4.0 134.0 0.0 . 101 . . Atlas-SNP MAD2L1BP 9587 hgsc.bcm.edu hg19 6 43604135 43604135 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MAD2L1BP NM_001003690 exon3 c.A160G p.K54E TATGAGAAGTCCG . 100.0 4.0 82.0 0.0 . 12 . . Atlas-SNP CRISP3 10321 hgsc.bcm.edu hg19 6 49705125 49705125 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CRISP3 NM_001190986 exon2 c.T54C p.G18G AACAAAACCGGTG . 115.0 5.0 137.0 0.0 . 67 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 64498005 64498005 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EYS NM_001142800 exon39 c.T7716C p.G2572G TTGAAAACCATTT . 56.0 5.0 58.0 0.0 . 527 . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76388329 76388329 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SENP6 NM_015571 exon15 c.A1879G p.S627G CTTAGAAGCAAAC . 99.0 4.0 120.0 0.0 . 189 . . Atlas-SNP ME1 4199 hgsc.bcm.edu hg19 6 84108172 84108172 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ME1 NM_002395 exon3 c.T276C p.S92S AATGTCAGATGTC . 99.0 4.0 128.0 0.0 . 68 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84371275 84371275 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SNAP91 NM_001242794 exon5 c.A398G p.E133G GCCTTTTCATTCA . 72.0 4.0 134.0 0.0 . 199 . . Atlas-SNP MANEA 79694 hgsc.bcm.edu hg19 6 96052708 96052708 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MANEA NM_024641 exon4 c.T660C p.T220T GGTTACTTTTCAC . 92.0 4.0 171.0 0.0 . 58 . . Atlas-SNP HACE1 57531 hgsc.bcm.edu hg19 6 105244550 105244550 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HACE1 NM_020771 exon9 c.G796A p.E266K GGTCTTCATTCTG . 44.0 23.0 114.0 0.0 . 96 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106960807 106960807 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AIM1 NM_001624 exon1 c.A591G p.R197R AAGCAGAGAGCTG . 79.0 4.0 81.0 0.0 . 161 . . Atlas-SNP SNX3 8724 hgsc.bcm.edu hg19 6 108544209 108544209 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SNX3 NM_003795 exon2 c.G203A p.R68K CTTCTTCTAACAG . 50.0 4.0 71.0 0.0 . 11 . . Atlas-SNP DCBLD1 285761 hgsc.bcm.edu hg19 6 117861869 117861869 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DCBLD1 NM_173674 exon10 c.A1140G p.Q380Q AGTGCAAAACAAT . 95.0 4.0 131.0 0.0 . 56 . . Atlas-SNP HDDC2 51020 hgsc.bcm.edu hg19 6 125619942 125619942 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HDDC2 NM_016063 exon3 c.T227C p.V76A TCATGAACCAGGG . 89.0 4.0 131.0 0.0 . 21 . . Atlas-SNP ENPP3 5169 hgsc.bcm.edu hg19 6 132047295 132047295 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ENPP3 NM_005021 exon20 c.A1908G p.K636K TGGAAAAGCTATG . 98.0 4.0 156.0 0.0 . 117 . . Atlas-SNP NHSL1 57224 hgsc.bcm.edu hg19 6 138753581 138753581 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NHSL1 NM_020464 exon5 c.A1913G p.H638R ACGCTGTGCCTGG . 75.0 4.0 128.0 0.0 . 99 . . Atlas-SNP ZC3H12D 340152 hgsc.bcm.edu hg19 6 149783104 149783104 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZC3H12D NM_207360 exon3 c.A308G p.H103R TTTCCATGGCTAC . 41.0 4.0 94.0 0.0 . 21 . . Atlas-SNP KATNA1 11104 hgsc.bcm.edu hg19 6 149959680 149959680 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af KATNA1,NS,carcinoma,0,1 KATNA1 NM_007044 exon2 c.A4G p.S2G GAAGACTCATGTT . 57.0 3.0 93.0 0.0 . 34 . . Atlas-SNP PLEKHG1 57480 hgsc.bcm.edu hg19 6 151161732 151161732 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLEKHG1 NM_001029884 exon17 c.A3858G p.E1286E GTCAGAAGAAGAT . 97.0 4.0 157.0 0.0 . 97 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152763360 152763360 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SYNE1 NM_033071 exon31 c.A3879G p.S1293S CTTTGCTGAGATC . 73.0 4.0 107.0 0.0 . 3227 . . Atlas-SNP SLC22A3 6581 hgsc.bcm.edu hg19 6 160857848 160857848 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC22A3 NM_021977 exon6 c.T1012C p.F338L CCATCCTTTTTAG . 100.0 4.0 130.0 0.0 . 58 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2552910 2552910 + Missense_Mutation SNP A A G rs199517402 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LFNG NM_001166355 exon2 c.A167G p.E56G TGGATGAGTGGAG . 110.0 6.0 94.0 0.0 . 57 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2552911 2552911 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LFNG NM_001166355 exon2 c.G168A p.E56E GGATGAGTGGAGC . 110.0 5.0 94.0 0.0 . 57 . . Atlas-SNP PAPOLB 56903 hgsc.bcm.edu hg19 7 4900926 4900926 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PAPOLB NM_020144 exon1 c.A516G p.A172A TAATCTTGCAAAT . 54.0 4.0 67.0 0.0 . 93 . . Atlas-SNP BBS9 27241 hgsc.bcm.edu hg19 7 33217138 33217138 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BBS9 NM_014451 exon5 c.T377C p.M126T AATTGATGTATGA . 70.0 4.0 64.0 0.0 . 194 . . Atlas-SNP MLXIPL 51085 hgsc.bcm.edu hg19 7 73011792 73011792 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MLXIPL NM_032954 exon9 c.T1323C p.P441P GGCAGGAGGGACG . 89.0 4.0 90.0 0.0 . 54 . . Atlas-SNP RFC2 5982 hgsc.bcm.edu hg19 7 73646540 73646540 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RFC2 NM_181471 exon11 c.G961A p.G321R TGTATCCAATTTC . 91.0 4.0 77.0 0.0 . 27 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82580361 82580361 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PCLO NM_014510 exon6 c.T9543C p.V3181V AGTGGGAACAGAG . 100.0 4.0 90.0 0.0 . 1506 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94035575 94035575 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . COL1A2 NM_000089 exon12 c.T554C p.L185P ATGGTCTGGATGG . 91.0 4.0 68.0 0.0 . 240 . . Atlas-SNP SLC26A5 375611 hgsc.bcm.edu hg19 7 103050911 103050911 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC26A5 NM_206883 exon7 c.T656C p.V219A ACATGCACAGCTG . 113.0 5.0 104.0 0.0 . 231 . . Atlas-SNP RELN 5649 hgsc.bcm.edu hg19 7 103162472 103162472 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RELN NM_173054 exon48 c.T7665C p.S2555S CACCCCACTGAAA . 75.0 4.0 57.0 0.0 . 593 . . Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116371722 116371722 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MET NM_000245 exon3 c.A1201G p.T401A TTCCAGACACTTC . 90.0 4.0 93.0 0.0 . 412 . . Atlas-SNP PRRT4 401399 hgsc.bcm.edu hg19 7 127992597 127992597 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PRRT4 NM_001174164 exon6 c.A1013G p.E338G GGCGCCTCGGGAG . 94.0 4.0 74.0 0.0 . 31 . . Atlas-SNP CCDC136 64753 hgsc.bcm.edu hg19 7 128452197 128452197 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC136 NM_022742 exon13 c.A2372G p.D791G GCTATGACAGCAG . 103.0 5.0 110.0 0.0 . 170 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137374712 137374712 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DGKI NM_004717 exon2 c.T438C p.A146A TGCAGGAGCCAGA . 87.0 5.0 75.0 0.0 . 335 . . Atlas-SNP ZNF777 27153 hgsc.bcm.edu hg19 7 149129992 149129992 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF777 NM_015694 exon6 c.C1371T p.D457D CTCCTCGTCTTGT . 143.0 63.0 141.0 0.0 . 63 . . Atlas-SNP DLC1 10395 hgsc.bcm.edu hg19 8 13357252 13357252 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DLC1 NM_182643 exon2 c.T329C p.V110A TCAGAAACATGCA . 89.0 4.0 91.0 0.0 . 411 . . Atlas-SNP PIWIL2 55124 hgsc.bcm.edu hg19 8 22172606 22172606 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PIWIL2 NM_001135721 exon18 c.T2156C p.L719P TTTTACTTCAGAT . 92.0 4.0 158.0 0.0 . 100 . . Atlas-SNP ERLIN2 11160 hgsc.bcm.edu hg19 8 37611578 37611578 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ERLIN2 NM_007175 exon12 c.A965G p.K322R CTGACAAGCTAAG . 95.0 4.0 140.0 0.0 . 27 . . Atlas-SNP BRF2 55290 hgsc.bcm.edu hg19 8 37702706 37702706 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BRF2 NM_018310 exon4 c.T562C p.S188P GCACAGAAGGTGA . 97.0 4.0 187.0 0.0 . 33 . . Atlas-SNP SGK3 23678 hgsc.bcm.edu hg19 8 67752280 67752280 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SGK3 NM_001033578 exon11 c.A784G p.R262G GAGCACAGAGCTA . 75.0 4.0 85.0 0.0 . 92 . . Atlas-SNP CSPP1 79848 hgsc.bcm.edu hg19 8 68070772 68070772 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CSPP1 NM_024790 exon18 c.G2317A p.A773T CAGAGGGCACGAA . 83.0 4.0 104.0 0.0 . 129 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77766356 77766356 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZFHX4 NM_024721 exon10 c.A7199G p.E2400G AACCTGAGAAGAC . 91.0 4.0 92.0 0.0 . 878 . . Atlas-SNP MATN2 4147 hgsc.bcm.edu hg19 8 98943556 98943556 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MATN2 NM_002380 exon3 c.C518G p.P173R GGAGACCTCAGGA . 95.0 18.0 73.0 0.0 . 165 . . Atlas-SNP KCNQ3 3786 hgsc.bcm.edu hg19 8 133492571 133492571 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KCNQ3 NM_004519 exon1 c.A209G p.E70G CCGCCCTCCAGCA . 73.0 4.0 1.0 0.0 . 164 . . Atlas-SNP MROH6 642475 hgsc.bcm.edu hg19 8 144650754 144650754 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001100878 exon10 c.C1612T p.R538C GCAGGCGCAGCAG . 17.0 5.0 1.0 0.0 . . . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 441995 441995 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DOCK8 NM_203447 exon42 c.T5476C p.S1826P GAGATCTCACATA . 51.0 4.0 50.0 0.0 . 401 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2039815 2039815 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SMARCA2 NM_139045 exon4 c.G705A p.Q235Q GCAGCAGCAACAG . 97.0 6.0 94.0 0.0 . 313 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35700292 35700292 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TLN1 NM_006289 exon49 c.A6556G p.T2186A TGGCGGTTGCCAT . 100.0 4.0 138.0 0.0 . 185 . . Atlas-SNP GNE 10020 hgsc.bcm.edu hg19 9 36246060 36246060 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GNE NM_001128227 exon3 c.A677G p.K226R TAGTCTTTGTTCT . 93.0 4.0 81.0 0.0 . 141 . . Atlas-SNP PTAR1 375743 hgsc.bcm.edu hg19 9 72356709 72356709 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PTAR1 NM_001099666 exon3 c.A322G p.R108G CATACCTCACGTT . 98.0 5.0 85.0 0.0 . 46 . . Atlas-SNP VPS13A 23230 hgsc.bcm.edu hg19 9 79834895 79834895 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . VPS13A NM_001018038 exon11 c.C780T p.A260A TAATGCCAAACTT . 75.0 4.0 93.0 0.0 . 735 . . Atlas-SNP RASEF 158158 hgsc.bcm.edu hg19 9 85627416 85627416 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RASEF NM_152573 exon5 c.A776G p.Q259R TTTGATTGTTCTT . 77.0 4.0 74.0 0.0 . 69 . . Atlas-SNP IARS 3376 hgsc.bcm.edu hg19 9 95050074 95050074 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IARS NM_013417 exon4 c.A395G p.K132R CATACCTTCCACT . 136.0 6.0 143.0 0.0 . 74 . . Atlas-SNP FAM22F 54754 hgsc.bcm.edu hg19 9 97080944 97080944 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM22F NM_017561 exon7 c.C2074G p.P692A TGGCAGGAGAAGG . 390.0 17.0 377.0 0.0 . 72 . . Atlas-SNP IKBKAP 8518 hgsc.bcm.edu hg19 9 111644428 111644428 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IKBKAP NM_003640 exon30 c.G3262A p.A1088T CCCAGGCAGCTCC . 94.0 4.0 93.0 0.0 . 122 . . Atlas-SNP CTNNAL1 8727 hgsc.bcm.edu hg19 9 111735058 111735058 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CTNNAL1 NM_003798 exon9 c.A1244G p.H415R ACCACATGATCAG . 82.0 4.0 88.0 0.0 . 51 . . Atlas-SNP ZBTB6 10773 hgsc.bcm.edu hg19 9 125673934 125673934 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZBTB6 NM_006626 exon2 c.A418G p.T140A GGTCAGTGTGTTG . 55.0 4.0 75.0 0.0 . 32 . . Atlas-SNP DOLPP1 57171 hgsc.bcm.edu hg19 9 131847308 131847308 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DOLPP1 NM_001135917 exon3 c.T184C p.F62L ATCTCCTTCCTTG . 64.0 4.0 57.0 0.0 . 17 . . Atlas-SNP FAM78A 286336 hgsc.bcm.edu hg19 9 134136640 134136640 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM78A NM_033387 exon2 c.A421G p.T141A TGCAGGTCTCTGT . 69.0 4.0 76.0 0.0 . 28 . . Atlas-SNP SEC16A 9919 hgsc.bcm.edu hg19 9 139358965 139358965 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SEC16A NM_014866 exon9 c.T4353C p.C1451C CCTGGCACAGACA . 78.0 4.0 78.0 0.0 . 249 . . Atlas-SNP ASB13 79754 hgsc.bcm.edu hg19 10 5691033 5691033 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ASB13 NM_024701 exon4 c.C417T p.V139V GGCCCCGACGTCA . 105.0 61.0 98.0 0.0 . 26 . . Atlas-SNP UBE2D1 7321 hgsc.bcm.edu hg19 10 60123367 60123367 + Splice_Site SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . UBE2D1 NM_001204880 exon3 c.7-2A>G . AATTTCAGCCTGA . 111.0 5.0 76.0 0.0 . 16 . . Atlas-SNP KAT6B 23522 hgsc.bcm.edu hg19 10 76790247 76790247 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_012330 exon18 c.A5665G p.M1889V CCTCCAATGAATC . 216.0 73.0 106.0 0.0 . . . . Atlas-SNP ATAD1 84896 hgsc.bcm.edu hg19 10 89544340 89544340 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATAD1 NM_032810 exon5 c.T470C p.L157P GGCTGAAGGTTAA . 89.0 5.0 108.0 0.0 . 32 . . Atlas-SNP IFIT5 24138 hgsc.bcm.edu hg19 10 91177501 91177501 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IFIT5 NM_012420 exon2 c.T545C p.I182T ATGCTATCACAGT . 92.0 4.0 191.0 0.0 . 32 . . Atlas-SNP IFIT5 24138 hgsc.bcm.edu hg19 10 91177909 91177909 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IFIT5 NM_012420 exon2 c.A953G p.E318G TTGATGAGCTGAT . 95.0 4.0 111.0 0.0 . 32 . . Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94274762 94274762 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IDE NM_004969 exon5 c.A699G p.E233E AATGCCTTCTTGG . 64.0 4.0 108.0 0.0 . 77 . . Atlas-SNP CCNJ 54619 hgsc.bcm.edu hg19 10 97816897 97816897 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCNJ NM_001134375 exon5 c.T633C p.A211A TGTGGCTTCTTCG . 133.0 6.0 293.0 0.0 . 27 . . Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102256018 102256018 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af SEC31B,colon,carcinoma,0,1 SEC31B NM_015490 exon18 c.T2307C p.A769A TACCTGAGCACAG . 96.0 4.0 127.0 0.0 . 84 . . Atlas-SNP POLL 27343 hgsc.bcm.edu hg19 10 103347044 103347044 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . POLL NM_013274 exon2 c.T74C p.L25P TTTGCAAGTACTT . 86.0 4.0 125.0 0.0 . 43 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 106865182 106865182 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SORCS3 NM_014978 exon7 c.A1121G p.Q374R GGATCCAGGAATG . 92.0 4.0 167.0 0.0 . 282 . . Atlas-SNP GPAM 57678 hgsc.bcm.edu hg19 10 113940243 113940243 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPAM NM_001244949 exon4 c.T213C p.T71T CTGGGGAGTGCAG . 47.0 4.0 92.0 0.0 . 68 . . Atlas-SNP VWA2 340706 hgsc.bcm.edu hg19 10 116045937 116045937 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . VWA2 NM_001272046 exon11 c.A1237G p.I413V GATGGCATTCCCT . 72.0 4.0 115.0 0.0 . 64 . . Atlas-SNP FANK1 92565 hgsc.bcm.edu hg19 10 127697829 127697829 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FANK1 NM_145235 exon10 c.C966T p.D322D TTTTGACAGACAG . 58.0 5.0 106.0 0.0 . 46 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129907660 129907660 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MKI67 NM_002417 exon13 c.A2444G p.N815S GCTGCATTCTGTG . 95.0 4.0 122.0 0.0 . 363 . . Atlas-SNP TUBGCP2 10844 hgsc.bcm.edu hg19 10 135111545 135111545 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TUBGCP2 NM_006659 exon5 c.T527C p.I176T GGGAAGATGGGGA . 100.0 5.0 222.0 0.0 . 79 . . Atlas-SNP PSMD13 5719 hgsc.bcm.edu hg19 11 248788 248788 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PSMD13 NM_175932 exon6 c.A587G p.Q196R AGCAGCAGGAGAG . 72.0 4.0 119.0 0.0 . 53 . . Atlas-SNP IFITM3 10410 hgsc.bcm.edu hg19 11 320723 320723 + Missense_Mutation SNP C C T rs56227617 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af IFITM3,brain,glioma,0,1 IFITM3 NM_021034 exon1 c.G91A p.V31M CCAGCACAGCCAC . 58.0 3.0 96.0 1.0 . 132 . . Atlas-SNP C11orf40 143501 hgsc.bcm.edu hg19 11 4592711 4592711 + Missense_Mutation SNP T T A rs78543312 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C11orf40 NM_144663 exon4 c.A596T p.N199I ATACAGTTTTTCC . 133.0 10.0 155.0 0.0 . 37 . . Atlas-SNP C11orf40 143501 hgsc.bcm.edu hg19 11 4592712 4592712 + Missense_Mutation SNP T T G rs78387367 bycluster TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C11orf40 NM_144663 exon4 c.A595C p.N199H TACAGTTTTTCCC . 130.0 7.0 154.0 0.0 . 37 . . Atlas-SNP ARFIP2 23647 hgsc.bcm.edu hg19 11 6501574 6501574 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARFIP2 NM_012402 exon2 c.T78C p.P26P ATCTTCAGGAAGC . 70.0 4.0 132.0 0.0 . 23 . . Atlas-SNP DCHS1 8642 hgsc.bcm.edu hg19 11 6662744 6662744 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DCHS1 NM_003737 exon2 c.G101T p.G34V CCAGCCCCCAGCA . 31.0 6.0 53.0 0.0 . 277 . . Atlas-SNP MRVI1 10335 hgsc.bcm.edu hg19 11 10647928 10647928 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MRVI1 NM_130385 exon9 c.T953C p.L318P CTGTTCAGGGCCA . 91.0 4.0 176.0 0.0 . 113 . . Atlas-SNP USP47 55031 hgsc.bcm.edu hg19 11 11941963 11941963 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP47 NM_017944 exon9 c.G936A p.M312I AACCATGCATAGG . 58.0 4.0 102.0 0.0 . 91 . . Atlas-SNP NUCB2 4925 hgsc.bcm.edu hg19 11 17352479 17352479 + Nonsense_Mutation SNP C C T rs189362726 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NUCB2 NM_005013 exon13 c.C1204T p.Q402X AAATTACAACAAG . 16.0 6.0 1.0 0.0 . 31 . . Atlas-SNP NUCB2 4925 hgsc.bcm.edu hg19 11 17352480 17352480 + Missense_Mutation SNP A A T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NUCB2 NM_005013 exon13 c.A1205T p.Q402L AATTACAACAAGG . 14.0 6.0 1.0 0.0 . 31 . . Atlas-SNP SLC17A6 57084 hgsc.bcm.edu hg19 11 22381052 22381052 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC17A6 NM_020346 exon4 c.A552G p.R184R TGTCAGAATACTG . 96.0 4.0 139.0 0.0 . 135 . . Atlas-SNP QSER1 79832 hgsc.bcm.edu hg19 11 32977609 32977609 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . QSER1 NM_001076786 exon7 c.A4306G p.K1436E AACAAGAAGGAAT . 71.0 4.0 115.0 0.0 . 153 . . Atlas-SNP NAT10 55226 hgsc.bcm.edu hg19 11 34145347 34145347 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NAT10 NM_024662 exon10 c.A953G p.N318S CTGATAACCTCCA . 99.0 4.0 178.0 0.0 . 78 . . Atlas-SNP EXT2 2132 hgsc.bcm.edu hg19 11 44228357 44228357 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af EXT2_ENST00000358681,NS,carcinoma,0,2 EXT2 NM_000401 exon10 c.A1609G p.K537E TGGCCCAAAATCC . 39.0 2.0 67.0 0.0 . 129 . . Atlas-SNP LRTOMT 220074 hgsc.bcm.edu hg19 11 71819858 71819858 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LRTOMT NM_001145309 exon9 c.C763A p.Q255K TTCTTGCAGTATG . 125.0 45.0 108.0 0.0 . 20 . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103018563 103018563 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DYNC2H1 NM_001377 exon19 c.T2765C p.L922P ATGATCTCATCCA . 64.0 4.0 41.0 0.0 . 246 . . Atlas-SNP SNX19 399979 hgsc.bcm.edu hg19 11 130780180 130780180 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af SNX19,NS,carcinoma,0,1 SNX19 NM_014758 exon3 c.A1899G p.L633L TGATTCTAGGAGG . 47.0 2.0 66.0 0.0 . 84 . . Atlas-SNP CACNA1C 775 hgsc.bcm.edu hg19 12 2764398 2764398 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CACNA1C NM_199460 exon36 c.T4370C p.L1457P TGCTCCTCTTCAG . 91.0 4.0 92.0 0.0 . 1023 . . Atlas-SNP CLECL1 160365 hgsc.bcm.edu hg19 12 9885707 9885707 + Missense_Mutation SNP A A T rs113575400 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,2 CLECL1 NM_001267701 exon1 c.T154A p.S52T CTTCTGATAAGTA . 99.0 9.0 108.0 0.0 . 18 . T|1.000;|0.000 Atlas-SNP CLECL1 160365 hgsc.bcm.edu hg19 12 9885713 9885713 + Missense_Mutation SNP A A T rs200639830 bycluster TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CLECL1 NM_001267701 exon1 c.T148A p.Y50N ATAAGTAAATTGA . 103.0 9.0 110.0 0.0 . 18 . . Atlas-SNP SLCO1B3 28234 hgsc.bcm.edu hg19 12 21068948 21068948 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLCO1B3 NM_019844 exon16 c.T1876C p.L626L GTCTACTTGGGCT . 58.0 5.0 59.0 0.0 . 151 . . Atlas-SNP IPO8 10526 hgsc.bcm.edu hg19 12 30814173 30814173 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af IPO8,NS,carcinoma,0,1 IPO8 NM_006390 exon16 c.A1783G p.S595G CATCACTTTGAAG . 45.0 2.0 70.0 0.0 . 105 . . Atlas-SNP TMEM106C 79022 hgsc.bcm.edu hg19 12 48359893 48359893 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TMEM106C NM_001143843 exon5 c.T433C p.S145P AGGAACTCCAACT . 94.0 4.0 122.0 0.0 . 24 . . Atlas-SNP COL2A1 1280 hgsc.bcm.edu hg19 12 48372091 48372091 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . COL2A1 NM_001844 exon43 c.G2986A p.G996S GCAAGCCAGGGAA . 91.0 4.0 143.0 0.0 . 368 . . Atlas-SNP ATF7 11016 hgsc.bcm.edu hg19 12 53911113 53911113 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATF7 NM_006856 exon12 c.A1260G p.P420P ACCCGTTGGCTCT . 89.0 4.0 144.0 0.0 . 51 . . Atlas-SNP DTX3 196403 hgsc.bcm.edu hg19 12 58001168 58001168 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DTX3 NM_178502 exon5 c.C522T p.A174A GAATGCCAAGACA . 123.0 5.0 189.0 0.0 . 27 . . Atlas-SNP USP15 9958 hgsc.bcm.edu hg19 12 62790141 62790141 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP15 NM_001252078 exon20 c.T2637C p.A879A GATTGCTGTTTCC . 75.0 6.0 124.0 0.0 . 105 . . Atlas-SNP PPP1R12A 4659 hgsc.bcm.edu hg19 12 80266678 80266678 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPP1R12A NM_002480 exon2 c.T278C p.V93A TTTTCTACCAGAA . 74.0 4.0 122.0 0.0 . 76 . . Atlas-SNP CEP290 80184 hgsc.bcm.edu hg19 12 88523495 88523495 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,1 CEP290 NM_025114 exon10 c.A828G p.K276K GTTTTCTTTTTTT . 62.0 3.0 154.0 0.0 . 195 . . Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94631455 94631455 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLXNC1 NM_005761 exon10 c.T1996C p.S666P ATTAAGTCCATTG . 55.0 4.0 71.0 0.0 . 135 . . Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 99447084 99447084 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ANKS1B NM_152788 exon17 c.A2629G p.R877G TGGGTCTCATCTG . 71.0 4.0 93.0 0.0 . 180 . . Atlas-SNP ANO4 121601 hgsc.bcm.edu hg19 12 101333217 101333217 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ANO4 NM_178826 exon3 c.A180G p.E60E ATTGGAAGCCGGG . 63.0 4.0 110.0 0.0 . 183 . . Atlas-SNP SYCP3 50511 hgsc.bcm.edu hg19 12 102122736 102122736 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SYCP3 NM_001177949 exon9 c.T680C p.V227A TTCCGAACACTTG . 71.0 4.0 118.0 0.0 . 19 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104157304 104157304 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STAB2 NM_017564 exon68 c.A7523G p.K2508R TTGGCAAGCAGCA . 92.0 4.0 156.0 0.0 . 370 . . Atlas-SNP NT5DC3 51559 hgsc.bcm.edu hg19 12 104208807 104208807 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NT5DC3 NM_001031701 exon2 c.T301C p.F101L AATCGAAGCCATA . 98.0 5.0 183.0 0.0 . 113 . . Atlas-SNP DAO 1610 hgsc.bcm.edu hg19 12 109288138 109288138 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DAO NM_001917 exon7 c.A607G p.M203V CAGATCATGAAGG . 44.0 4.0 83.0 0.0 . 58 . . Atlas-SNP CIT 11113 hgsc.bcm.edu hg19 12 120241020 120241020 + Missense_Mutation SNP C C G rs145965687 bycluster;by1000genomes;alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CIT NM_001206999 exon10 c.G1285C p.G429R ATCTACCAAGAAT . 77.0 53.0 112.0 0.0 . 535 . C|1.000;T|0.000 Atlas-SNP CCDC62 84660 hgsc.bcm.edu hg19 12 123285708 123285708 + Missense_Mutation SNP C C T rs373036488 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCDC62 NM_201435 exon9 c.C1015T p.P339S AACCACCCAAAAG . 81.0 4.0 124.0 0.0 . 119 . . Atlas-SNP DDX55 57696 hgsc.bcm.edu hg19 12 124104625 124104625 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DDX55 NM_020936 exon14 c.A1741G p.T581A TTGACAACTGGCA . 88.0 4.0 149.0 0.0 . 51 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124824953 124824953 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NCOR2 NM_006312 exon38 c.C5375T p.S1792F GACGAGGACGTGG . 51.0 4.0 90.0 0.0 . 475 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23909856 23909856 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SACS NM_014363 exon10 c.A8159G p.D2720G ATTCTGTCTGATG . 72.0 4.0 106.0 0.0 . 871 . . Atlas-SNP FLT3 2322 hgsc.bcm.edu hg19 13 28608538 28608538 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FLT3 NM_004119 exon13 c.T1604C p.F535S AAAGGGAAGGGGC . 90.0 4.0 144.0 0.0 . 15525 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 49027248 49027248 + Splice_Site SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af RB1_ENST00000267163,bladder,carcinoma,0,1 RB1 NM_000321 exon18 c.1814+1G>A . AGATATGTAAGCA . 24.0 2.0 40.0 0.0 . 1068 . . Atlas-SNP DIAPH3 81624 hgsc.bcm.edu hg19 13 60240729 60240729 + Nonsense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af DIAPH3,colon,carcinoma,0,1 DIAPH3 NM_001042517 exon28 c.C3571T p.R1191X AAGCTCGTAATCT . 50.0 2.0 80.0 0.0 . 139 . . Atlas-SNP SLITRK6 84189 hgsc.bcm.edu hg19 13 86370190 86370190 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLITRK6 NM_032229 exon2 c.G454A p.E152K TTGGTTCAATCAC . 72.0 4.0 124.0 0.0 . 150 . . Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 99038053 99038053 + Silent SNP A A T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FARP1 NM_005766 exon8 c.A744T p.G248G CACGGGAATTCTA . 39.0 20.0 25.0 0.0 . 207 . . Atlas-SNP TM9SF2 9375 hgsc.bcm.edu hg19 13 100172292 100172292 + Missense_Mutation SNP T T C rs376468098 alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TM9SF2 NM_004800 exon3 c.T242C p.F81S CCAGGTTTGATTT . 86.0 4.0 75.0 0.0 . 52 . . Atlas-SNP F10 2159 hgsc.bcm.edu hg19 13 113803258 113803258 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . F10 NM_000504 exon8 c.C894T p.G298G GGAGGGCGGTGAG . 420.0 26.0 361.0 0.0 . 53 . . Atlas-SNP DCUN1D2 55208 hgsc.bcm.edu hg19 13 114112422 114112422 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DCUN1D2 NM_001014283 exon7 c.A702G p.G234G CCAAGCTCCTAAA . 89.0 5.0 79.0 0.0 . 17 . . Atlas-SNP OR11H6 122748 hgsc.bcm.edu hg19 14 20692756 20692756 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OR11H6 NM_001004480 exon1 c.C888T p.Y296Y GGTATACACAGCA . 97.0 4.0 117.0 0.0 . 60 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20859791 20859791 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TEP1 NM_007110 exon13 c.A2064G p.A688A CCTGTCTGCATTA . 72.0 4.0 149.0 0.0 . 224 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23530644 23530644 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ACIN1 NM_014977 exon17 c.A3461G p.E1154G CGCCGCTCCATTT . 89.0 4.0 136.0 0.0 . 147 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24884365 24884365 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NYNRIN NM_025081 exon9 c.C3410T p.A1137V AGGAGGCCTTCCT . 15.0 12.0 36.0 0.0 . 120 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24885708 24885708 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NYNRIN NM_025081 exon9 c.A4753G p.S1585G TGCAGGAGCTGCT . 55.0 4.0 83.0 0.0 . 120 . . Atlas-SNP STRN3 29966 hgsc.bcm.edu hg19 14 31425396 31425396 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STRN3 NM_001083893 exon2 c.A335G p.K112R AAGTCCTTCTTCA . 93.0 4.0 148.0 0.0 . 117 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31583498 31583498 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HECTD1 NM_015382 exon31 c.A5667G p.G1889G CATTTTTCCATTT . 98.0 4.0 204.0 0.0 . 159 . . Atlas-SNP DTD2 112487 hgsc.bcm.edu hg19 14 31917645 31917645 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_080664 exon3 c.A197G p.N66S TTCACATTTAACA . 74.0 4.0 123.0 0.0 . . . . Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45644656 45644656 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,1 FANCM NM_020937 exon14 c.C2699T p.T900I AAAGGACATCAGA . 30.0 2.0 76.0 0.0 . 225 . . Atlas-SNP POLE2 5427 hgsc.bcm.edu hg19 14 50118040 50118040 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . POLE2 NM_001197331 exon16 c.A1267G p.M423V TGCACATTTTATT . 83.0 4.0 159.0 0.0 . 36 . . Atlas-SNP OTX2 5015 hgsc.bcm.edu hg19 14 57268484 57268484 + Missense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OTX2 NM_001270525 exon3 c.A863T p.Q288L GATGTCTGATCTT . 78.0 4.0 149.0 0.0 . 47 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64641759 64641759 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SYNE2 NM_182914 exon95 c.A17333G p.E5778G CTAAAGAGTCTGT . 59.0 4.0 96.0 0.0 . 577 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68215323 68215323 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZFYVE26 NM_015346 exon42 c.T7450C p.S2484P AGGCAGAACGCAG . 68.0 4.0 117.0 0.0 . 223 . . Atlas-SNP DLST 1743 hgsc.bcm.edu hg19 14 75365074 75365074 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DLST NM_001933 exon11 c.A773G p.N258S ACAGTAACATCCA . 92.0 4.0 140.0 0.0 . 42 . . Atlas-SNP CATSPERB 79820 hgsc.bcm.edu hg19 14 92102785 92102785 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CATSPERB NM_024764 exon17 c.A1726G p.K576E TCACTTTTCCATA . 123.0 5.0 195.0 0.0 . 114 . . Atlas-SNP CCNK 8812 hgsc.bcm.edu hg19 14 99968582 99968582 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CCNK NM_001099402 exon7 c.T614C p.I205T CAGAGATCATAGC . 93.0 4.0 152.0 0.0 . 32 . . Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103466024 103466024 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDC42BPB NM_006035 exon5 c.T474C p.G158G ATCACCACCCACA . 98.0 5.0 175.0 0.0 . 123 . . Atlas-SNP EIF5 1983 hgsc.bcm.edu hg19 14 103803078 103803078 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EIF5 NM_001969 exon5 c.T219C p.R73R TGACCGTTACATT . 80.0 4.0 97.0 0.0 . 40 . . Atlas-SNP PPP1R13B 23368 hgsc.bcm.edu hg19 14 104206859 104206859 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PPP1R13B NM_015316 exon12 c.T1894C p.S632P CCGTGGACAGTGA . 75.0 5.0 114.0 0.0 . 72 . . Atlas-SNP ATP10A 57194 hgsc.bcm.edu hg19 15 26026243 26026243 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATP10A NM_024490 exon2 c.T577C p.C193R TGTGGCATAGCCC . 114.0 5.0 167.0 0.0 . 270 . . Atlas-SNP FMN1 342184 hgsc.bcm.edu hg19 15 33091107 33091107 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FMN1 NM_001103184 exon15 c.A3359G p.E1120G TCCTTCTCACCAG . 78.0 4.0 103.0 0.0 . 174 . . Atlas-SNP C15orf55 256646 hgsc.bcm.edu hg19 15 34646648 34646648 + Silent SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C15orf55 NM_175741 exon5 c.G993A p.V331V CTTAGTGTACATT . 68.0 4.0 160.0 0.0 . 110 . . Atlas-SNP BUB1B 701 hgsc.bcm.edu hg19 15 40504778 40504778 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BUB1B NM_001211 exon19 c.T2464C p.F822L GATCATTTTTGCA . 73.0 4.0 109.0 0.0 . 71 . . Atlas-SNP CASC4 113201 hgsc.bcm.edu hg19 15 44695118 44695118 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CASC4 NM_138423 exon9 c.A1106G p.D369G CTGTTGATCCGCA . 77.0 4.0 158.0 0.0 . 34 . . Atlas-SNP USP8 9101 hgsc.bcm.edu hg19 15 50791193 50791193 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP8 NM_001128610 exon20 c.T3265C p.S1089P GAAGTTTCTGATA . 77.0 4.0 167.0 0.0 . 90 . . Atlas-SNP DMXL2 23312 hgsc.bcm.edu hg19 15 51748508 51748508 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DMXL2 NM_001174116 exon37 c.A8333G p.Y2778C TTACAGTATTGAT . 99.0 4.0 197.0 0.0 . 262 . . Atlas-SNP NEDD4 4734 hgsc.bcm.edu hg19 15 56207944 56207944 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NEDD4 NM_198400 exon1 c.A1086G p.R362R AGTCTGTCTGGGA . 59.0 4.0 67.0 0.0 . 167 . . Atlas-SNP NARG2 79664 hgsc.bcm.edu hg19 15 60741135 60741135 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af NARG2,NS,carcinoma,0,1 NARG2 NM_024611 exon10 c.T2031C p.P677P AACAGAAGGCTGT . 70.0 3.0 163.0 0.0 . 82 . . Atlas-SNP IQCH 64799 hgsc.bcm.edu hg19 15 67553702 67553702 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IQCH NM_022784 exon2 c.A144G p.T48T TGAAACAGCAATC . 57.0 4.0 81.0 0.0 . 81 . . Atlas-SNP SCAPER 49855 hgsc.bcm.edu hg19 15 77059425 77059425 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SCAPER NM_020843 exon10 c.T1253C p.M418T TCTGCCATGGACT . 76.0 4.0 155.0 0.0 . 160 . . Atlas-SNP DNAJA4 55466 hgsc.bcm.edu hg19 15 78572631 78572631 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DNAJA4 NM_018602 exon8 c.T1110C p.P370P GCTTCCTCAGCTG . 60.0 4.0 76.0 0.0 . 63 . . Atlas-SNP IL16 3603 hgsc.bcm.edu hg19 15 81517943 81517943 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IL16 NM_001172128 exon2 c.A203G p.E68G CATCGGAGGCTGG . 69.0 4.0 114.0 0.0 . 254 . . Atlas-SNP SLC28A1 9154 hgsc.bcm.edu hg19 15 85438313 85438313 + Silent SNP C C T rs2277576 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af SLC28A1_ENST00000338602,NS,carcinoma,0,1 SLC28A1 NM_201651 exon6 c.C420T p.L140L GTTTCTCAAGCCT . 63.0 6.0 102.0 2.0 . 118 . . Atlas-SNP FANCI 55215 hgsc.bcm.edu hg19 15 89804010 89804010 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FANCI NM_001113378 exon4 c.T224C p.L75S TCCAGTTGGTGGA . 93.0 4.0 153.0 0.0 . 129 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99460002 99460002 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IGF1R NM_000875 exon10 c.T2098C p.C700R CCTTGCTGCGCCT . 95.0 4.0 150.0 0.0 . 147 . . Atlas-SNP C1QTNF8 390664 hgsc.bcm.edu hg19 16 1143730 1143730 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C1QTNF8 NM_207419 exon4 c.A530G p.E177G TAGGTCTCCTTGT . 70.0 4.0 66.0 0.0 . 15 . . Atlas-SNP ZNF263 10127 hgsc.bcm.edu hg19 16 3340153 3340153 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF263 NM_005741 exon6 c.T1647C p.S549S CTTCTCTGAGTGT . 118.0 5.0 119.0 0.0 . 58 . . Atlas-SNP USP7 7874 hgsc.bcm.edu hg19 16 9009382 9009382 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP7 NM_003470 exon9 c.T907C p.L303L CGAGCAACTGAAA . 104.0 5.0 132.0 0.0 . 116 . . Atlas-SNP C16orf88 400506 hgsc.bcm.edu hg19 16 19725915 19725915 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . C16orf88 NM_001012991 exon2 c.T443C p.L148P TTTTTGAGCTTCT . 68.0 4.0 95.0 0.0 . 41 . . Atlas-SNP HS3ST2 9956 hgsc.bcm.edu hg19 16 22826066 22826066 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HS3ST2 NM_006043 exon1 c.T135C p.G45G CCTGGGTCGGAGC . 73.0 4.0 54.0 0.0 . 59 . . Atlas-SNP ARHGAP17 55114 hgsc.bcm.edu hg19 16 24958829 24958829 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARHGAP17 NM_001006634 exon14 c.T1215C p.P405P CAAGTTAGGGCCT . 68.0 4.0 64.0 0.0 . 138 . . Atlas-SNP XPO6 23214 hgsc.bcm.edu hg19 16 28124248 28124248 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . XPO6 NM_015171 exon16 c.T2128C p.S710P GGGCAGAGGCATC . 88.0 4.0 66.0 0.0 . 177 . . Atlas-SNP SETD1A 9739 hgsc.bcm.edu hg19 16 30978231 30978231 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SETD1A NM_014712 exon9 c.A2532G p.Q844Q GCAGCAAGCCAAG . 80.0 4.0 82.0 0.0 . 143 . . Atlas-SNP SLC12A3 6559 hgsc.bcm.edu hg19 16 56913123 56913123 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC12A3 NM_001126108 exon10 c.T1319C p.L440P ACGGCCTCATCAA . 79.0 4.0 109.0 0.0 . 99 . . Atlas-SNP CDH16 1014 hgsc.bcm.edu hg19 16 66946026 66946026 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CDH16 NM_004062 exon13 c.A1566G p.A522A TGGAGCTGCCTCA . 75.0 4.0 96.0 0.0 . 91 . . Atlas-SNP ATP6V0D1 9114 hgsc.bcm.edu hg19 16 67477048 67477048 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ATP6V0D1 NM_004691 exon4 c.A515G p.D172G TCAAGGTCCTGCT . 145.0 6.0 187.0 0.0 . 25 . . Atlas-SNP CENPT 80152 hgsc.bcm.edu hg19 16 67864301 67864301 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CENPT NM_025082 exon11 c.A854G p.Q285R TTCTTCTGCAGCC . 94.0 6.0 119.0 0.0 . 26 . . Atlas-SNP EDC4 23644 hgsc.bcm.edu hg19 16 67916724 67916724 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EDC4 NM_014329 exon26 c.T3585C p.S1195S CGGCAGTGTTCGT . 76.0 4.0 89.0 0.0 . 101 . . Atlas-SNP PHLPP2 23035 hgsc.bcm.edu hg19 16 71683278 71683278 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PHLPP2 NM_015020 exon18 c.A3487G p.S1163G CCTTGCTGCCATT . 69.0 4.0 72.0 0.0 . 96 . . Atlas-SNP CHST6 4166 hgsc.bcm.edu hg19 16 75513087 75513087 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CHST6 NM_021615 exon3 c.A640G p.T214A TGGCTGTCTGCTC . 75.0 4.0 8.0 0.0 . 57 . . Atlas-SNP CHST5 23563 hgsc.bcm.edu hg19 16 75563627 75563627 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af CHST5,right_upper_lobe,carcinoma,0,1 CHST5 NM_024533 exon3 c.T656C p.I219T TGCACGATGCGCA . 27.0 2.0 23.0 0.0 . 47 . . Atlas-SNP TAF1C 9013 hgsc.bcm.edu hg19 16 84214979 84214979 + Silent SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af TAF1C,bladder,carcinoma,0,1 TAF1C NM_005679 exon10 c.G1197T p.V399V GGTCAGCACCCGA . 160.0 8.0 151.0 1.0 . 60 . . Atlas-SNP SMG6 23293 hgsc.bcm.edu hg19 17 2203182 2203182 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SMG6 NM_017575 exon2 c.A865G p.R289G GTGGCCTCTCCTT . 90.0 4.0 135.0 0.0 . 97 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4575334 4575334 + Silent SNP T T G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PELP1 NM_014389 exon16 c.A2952C p.P984P CAGAGCTGGAGGC . 19.0 5.0 48.0 0.0 . 102 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7579349 7579349 + Missense_Mutation SNP A A C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af TP53_ENST00000413465,NS,carcinoma,0,16 TP53 NM_000546 exon4 c.T338G p.F113C TGCAAGAAGCCCA . 137.0 84.0 200.0 0.0 . 33396 . . Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8131865 8131865 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CTC1 NM_025099 exon22 c.T3470C p.L1157P AAAGAAAGCACAA . 95.0 4.0 122.0 0.0 . 75 . . Atlas-SNP GAS7 8522 hgsc.bcm.edu hg19 17 9843452 9843452 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GAS7 NM_201433 exon8 c.A797G p.Q266R TCCTCCTGTGAAG . 85.0 4.0 130.0 0.0 . 113 . . Atlas-SNP MYH3 4621 hgsc.bcm.edu hg19 17 10532990 10532990 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MYH3 NM_002470 exon40 c.C5720T p.A1907V TCCTCGGCCTCCT . 79.0 4.0 114.0 0.0 . 227 . . Atlas-SNP ZNF287 57336 hgsc.bcm.edu hg19 17 16456389 16456389 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF287 NM_020653 exon6 c.T1067C p.I356T TGTACAATACCAT . 86.0 4.0 102.0 0.0 . 60 . . Atlas-SNP TRIM16L 147166 hgsc.bcm.edu hg19 17 18638692 18638692 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TRIM16L NM_001037330 exon5 c.G966T p.K322N TTCCAAGAAGGAA . 182.0 74.0 161.0 0.0 . 15 . . Atlas-SNP WSB1 26118 hgsc.bcm.edu hg19 17 25630657 25630657 + Nonsense_Mutation SNP T T A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WSB1 NM_015626 exon3 c.T474A p.Y158X TGTATATACAGGT . 90.0 34.0 115.0 0.0 . 29 . . Atlas-SNP MYO1D 4642 hgsc.bcm.edu hg19 17 31087321 31087321 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MYO1D NM_015194 exon10 c.T1283C p.I428T CAGGGGATCCCTT . 116.0 5.0 95.0 0.0 . 93 . . Atlas-SNP KRT24 192666 hgsc.bcm.edu hg19 17 38858135 38858135 + Missense_Mutation SNP A A C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,1 KRT24 NM_019016 exon2 c.T666G p.N222K TCTGGCATTGTCA . 341.0 14.0 291.0 0.0 . 60 . . Atlas-SNP KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39458577 39458577 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KRTAP29-1 NM_001257309 exon1 c.G527C p.C176S GCTGTACAGATGG . 43.0 5.0 37.0 0.0 . 2 . . Atlas-SNP GHDC 84514 hgsc.bcm.edu hg19 17 40343211 40343211 + Missense_Mutation SNP G G C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GHDC NM_001142623 exon6 c.C907G p.L303V GCTGTAGGTTTAG . 72.0 34.0 71.0 0.0 . 63 . . Atlas-SNP HOXB6 3216 hgsc.bcm.edu hg19 17 46673963 46673963 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af HOXB6,NS,carcinoma,0,1 HOXB6 NM_018952 exon4 c.A487G p.K163E ACTCCTTCTCCAG . 85.0 4.0 73.0 0.0 . 13 . . Atlas-SNP SEPT4 5414 hgsc.bcm.edu hg19 17 56603141 56603141 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SEPT4 NM_001256782 exon5 c.A498G p.G166G AGACTCTCCTGAG . 58.0 4.0 80.0 0.0 . 48 . . Atlas-SNP TEX14 56155 hgsc.bcm.edu hg19 17 56638968 56638968 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TEX14 NM_001201457 exon30 c.A4208G p.H1403R GTAGAGTGAGCTC . 109.0 5.0 114.0 0.0 . 343 . . Atlas-SNP PSMD12 5718 hgsc.bcm.edu hg19 17 65337110 65337110 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PSMD12 NM_002816 exon11 c.A1220G p.D407G AATCTGTCTACTT . 94.0 4.0 89.0 0.0 . 32 . . Atlas-SNP NUP85 79902 hgsc.bcm.edu hg19 17 73214301 73214301 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NUP85 NM_024844 exon7 c.T497C p.L166P TCCATCTCCTTGA . 110.0 6.0 115.0 0.0 . 44 . . Atlas-SNP RNF157 114804 hgsc.bcm.edu hg19 17 74169787 74169787 + Missense_Mutation SNP C C T rs144334591 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RNF157 NM_052916 exon3 c.G292A p.V98I ACTTGACGAGCCT . 131.0 62.0 152.0 0.0 . 66 . C|1.000;T|0.000 Atlas-SNP ST6GALNAC2 10610 hgsc.bcm.edu hg19 17 74562230 74562230 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ST6GALNAC2 NM_006456 exon9 c.A1081G p.R361G GGTCCCTCCACAG . 86.0 4.0 94.0 0.0 . 29 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 8376068 8376068 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PTPRM NM_001105244 exon25 c.A3196G p.I1066V CGAGAGATCAGAC . 67.0 4.0 68.0 0.0 . 185 . . Atlas-SNP DSG4 147409 hgsc.bcm.edu hg19 18 28972131 28972131 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DSG4 NM_001134453 exon8 c.T833C p.I278T CCAGTATTGAAGA . 91.0 4.0 91.0 0.0 . 343 . . Atlas-SNP BCL2 596 hgsc.bcm.edu hg19 18 60795978 60795978 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . BCL2 NM_000633 exon3 c.A600G p.E200E GTACAGTTCCACA . 119.0 42.0 132.0 0.0 . 272 . . Atlas-SNP WDR18 57418 hgsc.bcm.edu hg19 19 985884 985884 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . WDR18 NM_024100 exon2 c.T230C p.I77T AGAAGATCATGTG . 96.0 4.0 98.0 0.0 . 20 . . Atlas-SNP DAPK3 1613 hgsc.bcm.edu hg19 19 3959236 3959236 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DAPK3 NM_001348 exon8 c.A1228G p.K410E GGCGCTTGAGGCC . 64.0 4.0 13.0 0.0 . 56 . . Atlas-SNP GPR108 56927 hgsc.bcm.edu hg19 19 6731272 6731272 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPR108 NM_001080452 exon16 c.A1372G p.T458A TGCGGGTGAAGTA . 134.0 6.0 95.0 0.0 . 35 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9020072 9020072 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af MUC16_ENST00000397910,NS,carcinoma,0,1 MUC16 NM_024690 exon21 c.C37423T p.R12475W ACAGCCGCTCTCT . 247.0 90.0 220.0 0.0 . 4315 . . Atlas-SNP ZNF823 55552 hgsc.bcm.edu hg19 19 11832694 11832694 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF823 NM_001080493 exon4 c.A1655G p.E552G GGTTTCTCTCCAG . 95.0 4.0 98.0 0.0 . 104 . . Atlas-SNP ZNF700 90592 hgsc.bcm.edu hg19 19 12059745 12059745 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF700 NM_001271848 exon4 c.A915G p.G305G CATGGGAGAGAAG . 94.0 4.0 63.0 0.0 . 81 . . Atlas-SNP RAD23A 5886 hgsc.bcm.edu hg19 19 13059162 13059162 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RAD23A NM_005053 exon3 c.T406C p.S136P CCAGAGTCTGTGT . 76.0 4.0 79.0 0.0 . 29 . . Atlas-SNP DCAF15 90379 hgsc.bcm.edu hg19 19 14070706 14070706 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . DCAF15 NM_138353 exon9 c.A1439G p.E480G TTCTGGAGGTGGG . 104.0 6.0 113.0 0.0 . 30 . . Atlas-SNP AKAP8 10270 hgsc.bcm.edu hg19 19 15484733 15484733 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AKAP8 NM_005858 exon4 c.T235C p.S79P CGTAAGAGGCCAT . 97.0 5.0 104.0 0.0 . 68 . . Atlas-SNP EPS15L1 58513 hgsc.bcm.edu hg19 19 16513229 16513229 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . EPS15L1 NM_021235 exon16 c.A1694G p.D565G ACCTGGTCATACT . 100.0 4.0 84.0 0.0 . 81 . . Atlas-SNP KCNN1 3780 hgsc.bcm.edu hg19 19 18108964 18108964 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KCNN1 NM_002248 exon11 c.C1381T p.Q461X CAGACCCAGACCG . 59.0 4.0 73.0 0.0 . 74 . . Atlas-SNP ZNF714 148206 hgsc.bcm.edu hg19 19 21299779 21299779 + Missense_Mutation SNP A A T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF714 NM_182515 exon5 c.A309T p.E103D TTATGAACTAAAC . 106.0 7.0 112.0 0.0 . 121 . . Atlas-SNP GRAMD1A 57655 hgsc.bcm.edu hg19 19 35504479 35504479 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GRAMD1A NM_020895 exon9 c.A754G p.S252G GCCCTGAGCGACA . 90.0 4.0 91.0 0.0 . 39 . . Atlas-SNP C19orf55 148137 hgsc.bcm.edu hg19 19 36258938 36258938 + Splice_Site SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,11 C19orf55 NM_001039887 exon9 c.1190+1G>A . TGCCCAGGGCCGC . 19.0 4.0 10.0 0.0 . 39 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36351240 36351240 + Nonsense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KIRREL2 NM_199180 exon6 c.C715T p.Q239X ACTGTGCAGGAGG . 63.0 4.0 47.0 0.0 . 170 . . Atlas-SNP ZNF567 163081 hgsc.bcm.edu hg19 19 37211090 37211090 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF567 NM_152603 exon4 c.G1371T p.M457I TAGAATGAAGTCA . 108.0 32.0 92.0 0.0 . 61 . . Atlas-SNP ZNF793 390927 hgsc.bcm.edu hg19 19 38023265 38023265 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF793 NM_001013659 exon6 c.T23C p.V8A TACCTGTGTCATT . 88.0 4.0 82.0 0.0 . 50 . . Atlas-SNP PSG4 5672 hgsc.bcm.edu hg19 19 43699239 43699239 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af PSG4_ENST00000405312,NS,carcinoma,0,1 PSG4 NM_002780 exon4 c.C896G p.T299S GTGACATTGGGTA . 67.0 6.0 69.0 1.0 . 129 . . Atlas-SNP ZNF576 79177 hgsc.bcm.edu hg19 19 44103100 44103100 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF576 NM_001145347 exon3 c.G203A p.G68E TGCAGGGGGTCCT . 173.0 80.0 133.0 0.0 . 11 . . Atlas-SNP ZNF226 7769 hgsc.bcm.edu hg19 19 44679880 44679880 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001032372 exon6 c.T465C p.G155G AGATGGTCCCAAT . 81.0 4.0 104.0 0.0 . . . . Atlas-SNP PLEKHA4 57664 hgsc.bcm.edu hg19 19 49357343 49357343 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLEKHA4 NM_020904 exon11 c.C1097T p.T366M AGCAGCGTCTGGA . 121.0 59.0 106.0 0.0 . 70 . . Atlas-SNP DHDH 27294 hgsc.bcm.edu hg19 19 49442857 49442857 + Missense_Mutation SNP C C G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af DHDH,colon,carcinoma,0,1 DHDH NM_014475 exon4 c.C518G p.A173G GGGGGGCCCTGCT . 63.0 3.0 62.0 0.0 . 35 . . Atlas-SNP ZNF611 81856 hgsc.bcm.edu hg19 19 53208850 53208850 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF611 NM_030972 exon7 c.A1458G p.E486E CCCACATTCATTA . 103.0 5.0 103.0 0.0 . 72 . . Atlas-SNP ZNF816 125893 hgsc.bcm.edu hg19 19 53454471 53454471 + Missense_Mutation SNP G G C rs79566976 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF816 NM_001202457 exon4 c.C557G p.A186G GAGGAAGCACCGA . 81.0 6.0 91.0 0.0 . 73 . . Atlas-SNP ZNF347 84671 hgsc.bcm.edu hg19 19 53643997 53643997 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF347 NM_001172675 exon5 c.A2087G p.K696R GCAAGCTTTGATG . 122.0 6.0 88.0 0.0 . 87 . . Atlas-SNP ZNF805 390980 hgsc.bcm.edu hg19 19 57765823 57765823 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF805 NM_001023563 exon4 c.A1636G p.K546E TGTGGAAAGGCCT . 85.0 4.0 91.0 0.0 . 30 . . Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4162577 4162577 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SMOX NM_175839 exon4 c.A563G p.E188G ACCCAGAGGCTAC . 92.0 6.0 104.0 0.0 . 119 . . Atlas-SNP KIF16B 55614 hgsc.bcm.edu hg19 20 16360047 16360047 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . KIF16B NM_001199865 exon19 c.A2600G p.E867G TCATGTTCACATT . 82.0 4.0 74.0 0.0 . 305 . . Atlas-SNP OVOL2 58495 hgsc.bcm.edu hg19 20 18022238 18022238 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OVOL2 NM_021220 exon3 c.T451C p.F151L CGCAGAAGGTGCA . 123.0 5.0 114.0 0.0 . 18 . . Atlas-SNP SLC24A3 57419 hgsc.bcm.edu hg19 20 19698204 19698204 + Silent SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLC24A3 NM_020689 exon16 c.C1752T p.S584S CTACTCCGTAGGC . 241.0 103.0 235.0 0.0 . 92 . . Atlas-SNP NECAB3 63941 hgsc.bcm.edu hg19 20 32246573 32246573 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NECAB3 NM_031232 exon9 c.T947C p.L316P CAGCGCAGGGCTC . 149.0 6.0 158.0 0.0 . 27 . . Atlas-SNP RPN2 6185 hgsc.bcm.edu hg19 20 35865012 35865012 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RPN2 NM_002951 exon16 c.A1783G p.T595A TACTGGACTCAGC . 111.0 5.0 126.0 0.0 . 45 . . Atlas-SNP FAM83D 81610 hgsc.bcm.edu hg19 20 37576564 37576564 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM83D NM_030919 exon3 c.T787C p.S263P GCAAGGTCAGGAA . 88.0 4.0 77.0 0.0 . 60 . . Atlas-SNP OCSTAMP 128506 hgsc.bcm.edu hg19 20 45174327 45174327 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OCSTAMP NM_080721 exon2 c.T686C p.V229A CCTGTGACCACTC . 87.0 5.0 86.0 0.0 . 34 . . Atlas-SNP TSHZ2 128553 hgsc.bcm.edu hg19 20 51872639 51872639 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . TSHZ2 NM_173485 exon2 c.A2642G p.E881G CACAAGAGCGTAT . 86.0 4.0 104.0 0.0 . 209 . . Atlas-SNP LSM14B 149986 hgsc.bcm.edu hg19 20 60706422 60706422 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LSM14B NM_144703 exon7 c.T846C p.A282A CAAGGCTGAGAAG . 85.0 4.0 99.0 0.0 . 62 . . Atlas-SNP GART 2618 hgsc.bcm.edu hg19 21 34882122 34882122 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af .,5 GART NM_001136005 exon18 c.A2420G p.K807R CTGGCCTTTTTTT . 78.0 4.0 58.0 0.0 . 81 . . Atlas-SNP FAM3B 54097 hgsc.bcm.edu hg19 21 42720630 42720630 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM3B NM_058186 exon7 c.T597C p.P199P ACTCCCTTCCGAA . 96.0 4.0 150.0 0.0 . 22 . . Atlas-SNP PKNOX1 5316 hgsc.bcm.edu hg19 21 44441414 44441414 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PKNOX1 NM_004571 exon8 c.T722C p.L241P AAAAGCTTCAGTT . 100.0 4.0 100.0 0.0 . 40 . . Atlas-SNP CARD10 29775 hgsc.bcm.edu hg19 22 37902375 37902375 + Missense_Mutation SNP C C A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . CARD10 NM_014550 exon7 c.G1207T p.D403Y TCCGGTCACGGCT . 230.0 68.0 207.0 0.0 . 55 . . Atlas-SNP TRIOBP 11078 hgsc.bcm.edu hg19 22 38119756 38119756 + Missense_Mutation SNP A A G rs77530465 alternate_allele TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af TRIOBP_ENST00000344404,NS,carcinoma,0,1 TRIOBP NM_001039141 exon7 c.A1193G p.Q398R CCACTCAACGAGA . 13.0 8.0 1.0 0.0 . 262 . . Atlas-SNP PRR5 55615 hgsc.bcm.edu hg19 22 45110469 45110469 + Splice_Site SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PRR5 NM_001017528 exon3 c.108-2A>G . GCCCCCAGCATCC . 107.0 5.0 82.0 0.0 . 75 . . Atlas-SNP PLXNB2 23654 hgsc.bcm.edu hg19 22 50720335 50720335 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLXNB2 NM_012401 exon20 c.A3293G p.E1098G AAGTTCTCAAAGG . 39.0 4.0 38.0 0.0 . 172 . . Atlas-SNP ACOT9 23597 hgsc.bcm.edu hg19 X 23726023 23726023 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ACOT9 NM_001037171 exon10 c.A701G p.E234G TCTTCCTCTGGGC . 79.0 4.0 80.0 0.0 . 33 . . Atlas-SNP MAGEB10 139422 hgsc.bcm.edu hg19 X 27839847 27839847 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MAGEB10 NM_182506 exon3 c.A424G p.T142A AATGTAACCCAAA . 84.0 4.0 113.0 0.0 . 107 . . Atlas-SNP USP9X 8239 hgsc.bcm.edu hg19 X 41088999 41088999 + Silent SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . USP9X NM_001039591 exon43 c.A7398G p.T2466T GATGACACTTGCA . 108.0 5.0 79.0 0.0 . 385 . . Atlas-SNP ZNF41 7592 hgsc.bcm.edu hg19 X 47307022 47307022 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF41 NM_007130 exon5 c.A2147G p.E716G TGTCTTTCTCCAG . 78.0 4.0 94.0 0.0 . 71 . . Atlas-SNP ZNF630 57232 hgsc.bcm.edu hg19 X 47919903 47919903 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ZNF630 NM_001037735 exon4 c.A164G p.D55G ATTACATCTGGTT . 27.0 21.0 22.0 0.0 . 71 . . Atlas-SNP AKAP4 8852 hgsc.bcm.edu hg19 X 49958534 49958534 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . AKAP4 NM_003886 exon5 c.A830G p.E277G ACAGCTTCATAGG . 65.0 4.0 46.0 0.0 . 131 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53565344 53565344 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . HUWE1 NM_031407 exon77 c.G11950A p.V3984I CCAGGACAGCAAA . 85.0 4.0 92.0 0.0 . 724 . . Atlas-SNP FAM120C 54954 hgsc.bcm.edu hg19 X 54162988 54162988 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FAM120C NM_017848 exon5 c.A1194G p.K398K AACTGCTTTCTTG . 75.0 4.0 76.0 0.0 . 89 . . Atlas-SNP LAS1L 81887 hgsc.bcm.edu hg19 X 64754435 64754435 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . LAS1L NM_031206 exon1 c.T161C p.V54A ACCGTCACCTGGT . 74.0 4.0 73.0 0.0 . 72 . . Atlas-SNP YIPF6 286451 hgsc.bcm.edu hg19 X 67731743 67731743 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . YIPF6 NM_173834 exon2 c.A110G p.E37G AAGGAGAAATCAC . 50.0 4.0 47.0 0.0 . 27 . . Atlas-SNP STARD8 9754 hgsc.bcm.edu hg19 X 67937131 67937131 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . STARD8 NM_001142503 exon6 c.T375C p.S125S CTGGTCTCCTATG . 78.0 4.0 96.0 0.0 . 282 . . Atlas-SNP MED12 9968 hgsc.bcm.edu hg19 X 70357194 70357194 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . MED12 NM_005120 exon39 c.T5709C p.P1903P GCAACCTGCGGTG . 86.0 4.0 83.0 0.0 . 984 . . Atlas-SNP FLJ44635 0 hgsc.bcm.edu hg19 X 71379912 71379912 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . FLJ44635 NM_207422 exon2 c.T233C p.V78A ATAGTGTCATGAA . 99.0 4.0 88.0 0.0 . 13 . . Atlas-SNP GPRASP1 9737 hgsc.bcm.edu hg19 X 101909698 101909698 + Missense_Mutation SNP G G T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPRASP1 NM_001099411 exon3 c.G857T p.R286M GGTTTAGGTCTAA . 80.0 66.0 76.0 0.0 . 140 . . Atlas-SNP GPRASP1 9737 hgsc.bcm.edu hg19 X 101912553 101912553 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . GPRASP1 NM_001099411 exon3 c.T3712C p.C1238R TACATATGTAAAG . 76.0 4.0 57.0 0.0 . 140 . . Atlas-SNP IL1RAPL2 26280 hgsc.bcm.edu hg19 X 104478544 104478544 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . IL1RAPL2 NM_017416 exon4 c.T399C p.V133V GACTGTTGCAGAG . 66.0 4.0 64.0 0.0 . 105 . . Atlas-SNP SOWAHD 347454 hgsc.bcm.edu hg19 X 118893082 118893082 + Missense_Mutation SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001105576 exon1 c.T452C p.V151A ACTCGGTTCTGCA . 54.0 4.0 26.0 0.0 . . . . Atlas-SNP NKAP 79576 hgsc.bcm.edu hg19 X 119068493 119068493 + Missense_Mutation SNP T T C rs199876887 TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NKAP NM_024528 exon5 c.A701G p.K234R TTGGCTTTCTTTG . 97.0 4.0 96.0 0.0 . 53 . . Atlas-SNP XIAP 331 hgsc.bcm.edu hg19 X 123020184 123020184 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . XIAP NM_001204401 exon2 c.T672C p.F224F ACACTTTCCTAAT . 90.0 4.0 60.0 0.0 . 56 . . Atlas-SNP OCRL 4952 hgsc.bcm.edu hg19 X 128695175 128695175 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . OCRL NM_000276 exon10 c.A844G p.S282G GACTTGAGCACAG . 112.0 5.0 111.0 0.0 . 117 . . Atlas-SNP ARHGAP36 158763 hgsc.bcm.edu hg19 X 130220617 130220617 + Silent SNP T T C novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARHGAP36 NM_144967 exon11 c.T1464C p.A488A CCTTGCTCAAAGC . 78.0 4.0 61.0 0.0 . 171 . . Atlas-SNP SLITRK2 84631 hgsc.bcm.edu hg19 X 144905987 144905987 + Missense_Mutation SNP G G A novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . SLITRK2 NM_001144005 exon5 c.G2044A p.G682S ACAGACGGCCATG . 51.0 43.0 57.0 0.0 . 221 . . Atlas-SNP PASD1 139135 hgsc.bcm.edu hg19 X 150832684 150832684 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PASD1 NM_173493 exon11 c.A935G p.D312G AGGTGGACTCAGT . 100.0 4.0 131.0 0.0 . 286 . . Atlas-SNP PLXNB3 5365 hgsc.bcm.edu hg19 X 153040831 153040831 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . PLXNB3 NM_001163257 exon26 c.A4376G p.H1459R ACGTGCACAGGAA . 88.0 4.0 43.0 0.0 . 208 . . Atlas-SNP SMIM9 100132963 hgsc.bcm.edu hg19 X 154057846 154057846 + Missense_Mutation SNP A A G novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . . NM_001162936 exon4 c.T236C p.L79P GAGGTGAGAAGAA . 170.0 9.0 74.0 0.0 . . . . Atlas-SNP F8 2157 hgsc.bcm.edu hg19 X 154194405 154194405 + Missense_Mutation SNP C C T novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . F8 NM_000132 exon9 c.G1283A p.S428N TATTGACTTTTAT . 91.0 4.0 50.0 0.0 . 646 . . Atlas-SNP ANKRD11 29123 hgsc.bcm.edu hg19 16 89341222 89341227 + Frame_Shift_Del DEL CTGGCT CTGGCT - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 CTGGCT CTGGCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ANKRD11 NM_013275 exon11 c.7709_7713del p.2570_2571del . . 69.0 18.0 90.0 0.0 . 195 . . Atlas-Indel,Pindel NOTCH2 4853 hgsc.bcm.edu hg19 1 120458918 120458919 + Frame_Shift_Ins INS - - AA novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . NOTCH2 NM_024408 exon34 c.6427_6428insTT p.E2143fs . . 216.0 49.0 217.0 0.0 . 348 . . Atlas-Indel,Pindel ARID2 196528 hgsc.bcm.edu hg19 12 46246364 46246376 + Frame_Shift_Del DEL TCCCGACTCAGGA TCCCGACTCAGGA - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 TCCCGACTCAGGA TCCCGACTCAGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . ARID2 NM_152641 exon15 c.4457_4469del p.1486_1490del . . 81.0 23.0 210.0 0.0 . 311 . . Atlas-Indel,Pindel RASA1 5921 hgsc.bcm.edu hg19 5 86665656 86665668 + Frame_Shift_Del DEL AGCACTTTAGTGA AGCACTTTAGTGA - novel TCGA-CC-A3MA-01A-11D-A20W-10 TCGA-CC-A3MA-10A-01D-A20W-10 AGCACTTTAGTGA AGCACTTTAGTGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f89d0a39-0177-499b-bb65-3cb17b108023 60141338-5497-4228-a24f-74b33d3d49af . RASA1 NM_002890 exon12 c.1636_1648del p.546_550del . . 158.0 20.0 0.0 0.0 . 213 . . Pindel