Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SCNN1D	6339	hgsc.bcm.edu	hg19	1	1222594	1222594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SCNN1D	NM_001130413	exon9	c.C1225G	p.P409A	CTGCTGCCCGCGG	.	83.0	11.0	100.0	0.0	.	60	.	.	Atlas-SNP
C1orf127	148345	hgsc.bcm.edu	hg19	1	11008817	11008817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C1orf127	NM_001170754	exon12	c.G1375A	p.A459T	GCTGAGCTTGCAC	.	64.0	19.0	73.0	0.0	.	134	.	.	Atlas-SNP
VWA5B1	127731	hgsc.bcm.edu	hg19	1	20664223	20664223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	VWA5B1	NM_001039500	exon14	c.G2027T	p.S676I	TGGCAAGTGACCC	.	213.0	64.0	226.0	0.0	.	44	.	.	Atlas-SNP
C1orf94	84970	hgsc.bcm.edu	hg19	1	34684343	34684343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	C1orf94_ENST00000488417,mucosal,malignant_melanoma,0,2	C1orf94	NM_001134734	exon7	c.G1778T	p.G593V	CCAGTGGGAATGG	.	76.0	19.0	79.0	0.0	.	156	.	.	Atlas-SNP
MFSD2A	84879	hgsc.bcm.edu	hg19	1	40431615	40431615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MFSD2A	NM_001136493	exon6	c.G682T	p.D228Y	TTCCAGGACCTCA	.	178.0	37.0	173.0	0.0	.	53	.	.	Atlas-SNP
HIVEP3	59269	hgsc.bcm.edu	hg19	1	42047556	42047556	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HIVEP3	NM_024503	exon4	c.G2913A	p.L971L	GGTGCCCAGGGGT	.	119.0	26.0	132.0	0.0	.	235	.	.	Atlas-SNP
TMEM53	79639	hgsc.bcm.edu	hg19	1	45120308	45120308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TMEM53	NM_024587	exon3	c.G757A	p.V253I	GGCTGACGTGTGC	.	88.0	4.0	67.0	0.0	.	40	.	.	Atlas-SNP
PTGER3	5733	hgsc.bcm.edu	hg19	1	71478137	71478137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PTGER3	NM_001126044	exon2	c.A928T	p.T310S	CTGATGTCTGATT	.	60.0	15.0	57.0	0.0	.	246	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75065587	75065587	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	C1orf173,NS,carcinoma,0,1	C1orf173	NM_001002912	exon11	c.G1518A	p.E506E	TTTCTCCTCATCT	.	83.0	19.0	67.0	0.0	.	380	.	.	Atlas-SNP
C1orf173	127254	hgsc.bcm.edu	hg19	1	75065589	75065589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C1orf173	NM_001002912	exon11	c.G1516T	p.E506X	TCTCCTCATCTAC	.	83.0	19.0	66.0	0.0	.	380	.	.	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	hg19	1	151680335	151680335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CELF3	NM_007185	exon6	c.C563A	p.A188D	TGGGTGGCCACCT	.	129.0	23.0	106.0	0.0	.	49	.	.	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	hg19	1	152127436	152127436	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	RPTN,NS,carcinoma,0,1	RPTN	NM_001122965	exon3	c.T2139G	p.T713T	ATCCCAAGTTTGA	.	107.0	11.0	87.0	0.0	.	123	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152883199	152883199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	IVL	NM_005547	exon2	c.A926G	p.Q309R	AGCAGCAGATGGG	.	246.0	32.0	219.0	0.0	.	100	.	.	Atlas-SNP
SHE	126669	hgsc.bcm.edu	hg19	1	154458426	154458426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SHE	NM_001010846	exon5	c.G1294T	p.A432S	TTAGGGCAATGGA	.	109.0	16.0	90.0	0.0	.	41	.	.	Atlas-SNP
NDUFS2	4720	hgsc.bcm.edu	hg19	1	161172205	161172205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NDUFS2	NM_001166159	exon1	c.C30A	p.F10L	CGGCTTCCGGGGC	.	124.0	29.0	118.0	0.0	.	33	.	.	Atlas-SNP
RGS5	8490	hgsc.bcm.edu	hg19	1	163122329	163122329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RGS5	NM_001254749	exon4	c.G395A	p.W132X	CCTACCCAGAGAC	.	98.0	19.0	80.0	0.0	.	29	.	.	Atlas-SNP
XCL2	6846	hgsc.bcm.edu	hg19	1	168511286	168511286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	XCL2,colon,carcinoma,0,1	XCL2	NM_003175	exon2	c.C121T	p.P41S	TAACTGGCAGTCG	.	66.0	14.0	61.0	0.0	.	18	.	.	Atlas-SNP
XCL1	6375	hgsc.bcm.edu	hg19	1	168549360	168549360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	XCL1,colon,carcinoma,0,1	XCL1	NM_002995	exon2	c.C121T	p.P41S	CGACTGCCGGTTA	.	345.0	25.0	268.0	0.0	.	16	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	172356293	172356293	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	DNM3,NS,carcinoma,0,1	DNM3	NM_015569	exon19	c.C2079A	p.S693S	AAATTCCGAGCTC	.	122.0	33.0	114.0	0.0	.	85	.	.	Atlas-SNP
NPL	80896	hgsc.bcm.edu	hg19	1	182797868	182797868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NPL	NM_030769	exon13	c.T788A	p.V263E	TTGGAGTGTCACA	.	115.0	17.0	78.0	0.0	.	55	.	.	Atlas-SNP
ZNF281	23528	hgsc.bcm.edu	hg19	1	200377850	200377850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZNF281	NM_012482	exon2	c.G984T	p.Q328H	GTACTTCTGAATA	.	90.0	18.0	65.0	0.0	.	74	.	.	Atlas-SNP
CACNA1S	779	hgsc.bcm.edu	hg19	1	201020120	201020120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CACNA1S	NM_000069	exon33	c.G4105A	p.A1369T	GGAAGGCACAGAG	.	62.0	8.0	75.0	0.0	.	249	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201184917	201184917	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	IGFN1	NM_001164586	exon15	c.G9246A	p.L3082L	GACACTGAGGAGT	.	78.0	15.0	67.0	0.0	.	220	.	.	Atlas-SNP
PLEKHA6	22874	hgsc.bcm.edu	hg19	1	204210607	204210607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PLEKHA6	NM_014935	exon17	c.G2305T	p.G769C	CAACGCCAACTGC	.	36.0	15.0	34.0	0.0	.	115	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216371684	216371684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	USH2A	NM_007123	exon18	c.T4054A	p.W1352R	AGACCCAGGCAGA	.	101.0	18.0	58.0	0.0	.	1168	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228503672	228503672	+	Silent	SNP	C	C	G	rs111746072	bycluster;alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OBSCN	NM_001271223	exon61	c.C16008G	p.P5336P	CGAACCCGTGCAC	.	218.0	79.0	157.0	0.0	.	2142	.	C|0.500;T|0.500	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228547311	228547311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OBSCN	NM_052843	exon81	c.A18718T	p.T6240S	ACCATCACCACTG	.	134.0	25.0	111.0	0.0	.	2142	.	.	Atlas-SNP
HIST3H2A	92815	hgsc.bcm.edu	hg19	1	228645460	228645460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HIST3H2A	NM_033445	exon1	c.C59T	p.S20L	GCGCGCGACGAGC	.	298.0	64.0	258.0	0.0	.	13	.	.	Atlas-SNP
C1orf198	84886	hgsc.bcm.edu	hg19	1	230979535	230979535	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C1orf198	NM_032800	exon3	c.C492A	p.A164A	CTTGAGGGCCTGG	.	53.0	5.0	70.0	0.0	.	29	.	.	Atlas-SNP
PLD5	200150	hgsc.bcm.edu	hg19	1	242263975	242263975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	PLD5_ENST00000536534,NS,carcinoma,0,2	PLD5	NM_152666	exon10	c.A1349T	p.Y450F	CCAATATAAGCTG	.	63.0	16.0	64.0	0.0	.	216	.	.	Atlas-SNP
FAM150B	285016	hgsc.bcm.edu	hg19	2	283165	283165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FAM150B	NM_001002919	exon5	c.A399C	p.R133S	GGCGCATCTTTTA	.	83.0	18.0	123.0	0.0	.	12	.	.	Atlas-SNP
CCDC88A	55704	hgsc.bcm.edu	hg19	2	55571513	55571513	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CCDC88A	NM_018084	exon11	c.T1179A	p.D393E	TTCCATATCATGA	.	73.0	17.0	80.0	0.0	.	336	.	.	Atlas-SNP
LRRTM4	80059	hgsc.bcm.edu	hg19	2	77746081	77746081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	LRRTM4	NM_024993	exon3	c.C914T	p.S305F	GTGATGGATATTA	.	76.0	19.0	78.0	0.0	.	334	.	.	Atlas-SNP
GPAT2	150763	hgsc.bcm.edu	hg19	2	96690205	96690205	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GPAT2	NM_207328	exon15	c.C1639T	p.L547L	CGGGCAGCAGCTC	.	55.0	11.0	80.0	0.0	.	46	.	.	Atlas-SNP
SLC4A10	57282	hgsc.bcm.edu	hg19	2	162761399	162761399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	SLC4A10_ENST00000446997,NS,carcinoma,0,2	SLC4A10	NM_001178015	exon14	c.G1731T	p.K577N	TGAAAAGATTTTG	.	120.0	30.0	132.0	0.0	.	309	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168103206	168103206	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	XIRP2	NM_152381	exon9	c.A5304G	p.T1768T	TGAAACACTGACA	.	203.0	56.0	173.0	0.0	.	914	.	.	Atlas-SNP
GPR155	151556	hgsc.bcm.edu	hg19	2	175309901	175309901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	GPR155,rectum,carcinoma,0,1	GPR155	NM_001033045	exon14	c.C2017T	p.L673F	TGGAAAGATTCTG	.	60.0	17.0	71.0	0.0	.	76	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179447182	179447182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TTN	NM_001267550	exon314	c.C66001A	p.P22001T	AGTTGGGCCTGCT	.	148.0	28.0	158.0	0.0	.	18412	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196544891	196544891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SLC39A10	NM_020342	exon2	c.G125T	p.G42V	ATCGTGGAATGAC	.	377.0	87.0	399.0	0.0	.	89	.	.	Atlas-SNP
SLC39A10	57181	hgsc.bcm.edu	hg19	2	196545343	196545343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SLC39A10	NM_020342	exon2	c.A577T	p.T193S	AACAACACTCACC	.	296.0	71.0	276.0	0.0	.	89	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207169971	207169971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZDBF2	NM_020923	exon5	c.C719G	p.P240R	CTGTGCCATCATC	.	248.0	65.0	247.0	0.0	.	531	.	.	Atlas-SNP
EPHA4	2043	hgsc.bcm.edu	hg19	2	222308221	222308221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EPHA4	NM_004438	exon10	c.T1880C	p.I627T	ACTCCTATAACTT	.	147.0	29.0	159.0	0.0	.	263	.	.	Atlas-SNP
SETD5	55209	hgsc.bcm.edu	hg19	3	9485064	9485064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SETD5	NM_001080517	exon11	c.G1150A	p.E384K	GATGCTGAGGTCA	.	74.0	25.0	56.0	0.0	.	210	.	.	Atlas-SNP
SCN5A	6331	hgsc.bcm.edu	hg19	3	38616808	38616808	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SCN5A	NM_198056	exon20	c.C3646T	p.L1216L	TGAGTAGGATCAT	.	87.0	23.0	98.0	0.0	.	634	.	.	Atlas-SNP
TOPAZ1	375337	hgsc.bcm.edu	hg19	3	44285485	44285485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	NM_001145030	exon2	c.A1487G	p.Y496C	GGCCCTATTATTC	.	178.0	56.0	178.0	0.0	.	.	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49691918	49691918	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	BSN	NM_003458	exon5	c.C4929T	p.C1643C	CCTGTGCCGGATC	.	42.0	11.0	56.0	0.0	.	272	.	.	Atlas-SNP
BSN	8927	hgsc.bcm.edu	hg19	3	49692087	49692087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	BSN	NM_003458	exon5	c.C5098G	p.L1700V	CTTGCCCTGGATC	.	59.0	14.0	49.0	0.0	.	272	.	.	Atlas-SNP
NEK4	6787	hgsc.bcm.edu	hg19	3	52786310	52786310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NEK4	NM_003157	exon7	c.G1006T	p.G336C	AGAGACCAGAGGC	.	125.0	30.0	131.0	0.0	.	51	.	.	Atlas-SNP
FEZF2	55079	hgsc.bcm.edu	hg19	3	62358201	62358201	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FEZF2	NM_018008	exon2	c.G343C	p.G115R	CCCCGCCGCCGCC	.	19.0	4.0	22.0	0.0	.	46	.	.	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	hg19	3	65365036	65365036	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MAGI1	NM_015520	exon18	c.G2979A	p.V993V	CTGCACCACGGTG	.	89.0	23.0	88.0	0.0	.	481	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97251373	97251373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EPHA6	NM_001080448	exon11	c.G2372C	p.G791A	TAGAAGGGGTTGT	.	146.0	37.0	165.0	0.0	.	439	.	.	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	hg19	3	97251374	97251374	+	Silent	SNP	G	G	T	rs369130484	alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EPHA6	NM_001080448	exon11	c.G2373T	p.G791G	AGAAGGGGTTGTC	.	147.0	37.0	165.0	0.0	.	439	.	.	Atlas-SNP
OR5K2	402135	hgsc.bcm.edu	hg19	3	98216699	98216699	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OR5K2	NM_001004737	exon1	c.A175T	p.M59L	ACACCAATGTACA	.	131.0	41.0	130.0	0.0	.	56	.	.	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	hg19	3	100513777	100513777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ABI3BP	NM_015429	exon22	c.G1878T	p.Q626H	AGTGGTCTGTAGT	.	264.0	71.0	298.0	0.0	.	305	.	.	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	hg19	3	113378345	113378345	+	Silent	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KIAA2018	NM_001009899	exon7	c.A2184G	p.Q728Q	AGACAATTGTACA	.	113.0	28.0	111.0	0.0	.	180	.	.	Atlas-SNP
ACPP	55	hgsc.bcm.edu	hg19	3	132061418	132061418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ACPP	NM_001099	exon6	c.A578G	p.K193R	TGGGAAAACTTTC	.	67.0	18.0	82.0	0.0	.	118	.	.	Atlas-SNP
NCK1	4690	hgsc.bcm.edu	hg19	3	136664512	136664512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NCK1	NM_006153	exon3	c.A314G	p.Y105C	GTCTCTATGACCT	.	183.0	55.0	217.0	0.0	.	26	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	167083713	167083713	+	Silent	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZBBX	NM_024687	exon6	c.A234G	p.Q78Q	ATATGATTGATTG	.	362.0	96.0	350.0	0.0	.	299	.	.	Atlas-SNP
LRRC31	79782	hgsc.bcm.edu	hg19	3	169574626	169574626	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	LRRC31	NM_024727	exon4	c.A522A	p.Q174Q	ATTTAGCTCTTCA	.	55.0	12.0	78.0	0.0	.	66	.	.	Atlas-SNP
SLC7A14	57709	hgsc.bcm.edu	hg19	3	170198647	170198647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	SLC7A14,colon,carcinoma,0,1	SLC7A14	NM_020949	exon7	c.G1424T	p.G475V	GCTGGGCCAGAAA	.	82.0	30.0	107.0	1.0	.	110	.	.	Atlas-SNP
CLCN2	1181	hgsc.bcm.edu	hg19	3	184073263	184073263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CLCN2	NM_001171087	exon12	c.C1225A	p.Q409K	GGCCCTGGCGGAC	.	99.0	4.0	114.0	0.0	.	74	.	.	Atlas-SNP
ACAP2	23527	hgsc.bcm.edu	hg19	3	195101743	195101743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ACAP2	NM_012287	exon4	c.C280A	p.H94N	CTGTGTGAAAATT	.	497.0	124.0	508.0	1.0	.	72	.	.	Atlas-SNP
SH3TC1	54436	hgsc.bcm.edu	hg19	4	8229789	8229789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SH3TC1	NM_018986	exon12	c.A2368G	p.T790A	CTCTACACCAGCT	.	112.0	35.0	141.0	0.0	.	105	.	.	Atlas-SNP
HTRA3	94031	hgsc.bcm.edu	hg19	4	8293260	8293260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HTRA3	NM_053044	exon4	c.T872A	p.M291K	CCGACATGGACTA	.	96.0	30.0	115.0	0.0	.	39	.	.	Atlas-SNP
KIT	3815	hgsc.bcm.edu	hg19	4	55598097	55598097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KIT	NM_000222	exon16	c.A2294G	p.D765G	CCCTAGACTTAGA	.	130.0	22.0	95.0	0.0	.	7396	.	.	Atlas-SNP
CSN1S1	1446	hgsc.bcm.edu	hg19	4	70810724	70810724	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CSN1S1	NM_001025104	exon14	c.530+2T>C	.	TGGTGGTAAGTTC	.	110.0	33.0	111.0	0.0	.	20	.	.	Atlas-SNP
GRSF1	2926	hgsc.bcm.edu	hg19	4	71698027	71698027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GRSF1	NM_002092	exon4	c.G811T	p.A271S	TACCTGCAAAGAA	.	102.0	22.0	109.0	0.0	.	35	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74285989	74285989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ALB	NM_000477	exon14	c.G1804T	p.A602S	GTTGCTGCAAGTC	.	167.0	35.0	191.0	0.0	.	132	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79387360	79387360	+	Splice_Site	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FRAS1	NM_025074	exon50	c.7030-2A>C	.	CCGGACAGGCCGA	.	84.0	14.0	107.0	0.0	.	779	.	.	Atlas-SNP
PDLIM5	10611	hgsc.bcm.edu	hg19	4	95507590	95507590	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PDLIM5	NM_006457	exon7	c.G915A	p.K305K	AAAGAAGGCAAAG	.	80.0	14.0	70.0	0.0	.	76	.	.	Atlas-SNP
C4orf21	55345	hgsc.bcm.edu	hg19	4	113540196	113540196	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C4orf21	NM_018392	exon6	c.G1002A	p.Q334Q	TGAACTCTGTGAG	.	102.0	30.0	120.0	0.0	.	223	.	.	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126238464	126238464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	FAT4_ENST00000394329,NS,carcinoma,0,2	FAT4	NM_024582	exon1	c.C898T	p.P300S	ATGGACCCTGAGA	.	86.0	14.0	98.0	0.0	.	1752	.	.	Atlas-SNP
C4orf45	152940	hgsc.bcm.edu	hg19	4	159836450	159836450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C4orf45	NM_152543	exon4	c.C418A	p.H140N	TCATATGCCAGGC	.	148.0	32.0	97.0	0.0	.	8	.	.	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187628856	187628856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FAT1	NM_005245	exon2	c.T2126C	p.V709A	GCATTGACAGAGT	.	64.0	15.0	91.0	0.0	.	500	.	.	Atlas-SNP
SLC12A7	10723	hgsc.bcm.edu	hg19	5	1073787	1073787	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SLC12A7	NM_006598	exon17	c.G2202A	p.T734T	CAGGTACGTCCCC	.	110.0	25.0	124.0	0.0	.	97	.	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5232631	5232631	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ADAMTS16	NM_139056	exon12	c.1850+2T>C	.	CCCAAGTAAGTAT	.	27.0	11.0	33.0	0.0	.	543	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127680112	127680112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FBN2	NM_001999	exon25	c.G3308T	p.G1103V	GCAAAGCCACTAT	.	127.0	35.0	177.0	0.0	.	858	.	.	Atlas-SNP
SLC6A7	6534	hgsc.bcm.edu	hg19	5	149580667	149580667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SLC6A7	NM_014228	exon6	c.G739T	p.A247S	TTCACGGCCACGT	.	60.0	16.0	54.0	0.0	.	52	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156378589	156378589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TIMD4	NM_138379	exon3	c.C613A	p.L205I	CCGGAAGGGTGCT	.	245.0	75.0	256.0	0.0	.	94	.	.	Atlas-SNP
FNDC9	408263	hgsc.bcm.edu	hg19	5	156770032	156770032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FNDC9	NM_001001343	exon2	c.G513T	p.R171S	TTCCTCCCTCTGA	.	116.0	28.0	118.0	0.0	.	22	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161116767	161116767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GABRA6	NM_000811	exon6	c.A655T	p.T219S	AGTGAGACAATTA	.	177.0	36.0	188.0	0.0	.	139	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169494671	169494671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	DOCK2	NM_004946	exon45	c.G4625T	p.G1542V	TGGGAGGCTTCGC	.	91.0	23.0	93.0	0.0	.	389	.	.	Atlas-SNP
CDHR2	54825	hgsc.bcm.edu	hg19	5	175995968	175995968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CDHR2	NM_017675	exon5	c.A272G	p.Y91C	CACTCTACACATT	.	68.0	20.0	64.0	0.0	.	152	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30672768	30672768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MDC1	NM_014641	exon10	c.A4192G	p.R1398G	AGGATCTATTTTT	.	106.0	5.0	120.0	0.0	.	218	.	.	Atlas-SNP
NCR3	259197	hgsc.bcm.edu	hg19	6	31557387	31557387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	NCR3,NS,carcinoma,0,1	NCR3	NM_001145466	exon3	c.A412G	p.T138A	GGACTGTACCAGC	.	92.0	41.0	60.0	0.0	.	21	.	.	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	hg19	6	83846990	83846990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	DOPEY1	NM_015018	exon21	c.G3229T	p.D1077Y	TTAAGTGACAGAC	.	266.0	59.0	260.0	0.0	.	190	.	.	Atlas-SNP
BEND3	57673	hgsc.bcm.edu	hg19	6	107390740	107390740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	BEND3	NM_001080450	exon5	c.A1655G	p.D552G	AGGCAGTCGGCAC	.	35.0	10.0	49.0	0.0	.	70	.	.	Atlas-SNP
ELFN1	392617	hgsc.bcm.edu	hg19	7	1784532	1784532	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ELFN1	NM_001128636	exon2	c.G300C	p.E100D	CATCGAGGACGGC	.	89.0	20.0	93.0	0.0	.	22	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4056922	4056922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SDK1	NM_152744	exon17	c.C2540G	p.A847G	TGGCGGCGTACAA	.	170.0	30.0	139.0	0.0	.	361	.	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18801900	18801900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HDAC9	NM_178425	exon14	c.G2164T	p.G722C	CTCCTAGGTCTGT	.	155.0	28.0	169.0	0.0	.	560	.	.	Atlas-SNP
ITGB8	3696	hgsc.bcm.edu	hg19	7	20406804	20406804	+	Missense_Mutation	SNP	G	G	T	rs139414321	alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ITGB8	NM_002214	exon3	c.G383T	p.R128L	AGCTGCGTCCAGG	.	78.0	28.0	55.0	0.0	.	159	.	G|1.000;A|0.000	Atlas-SNP
HIBADH	11112	hgsc.bcm.edu	hg19	7	27570940	27570940	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HIBADH	NM_152740	exon7	c.T723C	p.A241A	GATTTTAGCCAGT	.	132.0	27.0	117.0	0.0	.	28	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75183415	75183415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HIP1	NM_005338	exon21	c.G2155T	p.D719Y	CACAGTCGGCAGG	.	54.0	7.0	41.0	0.0	.	91	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84636185	84636185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SEMA3D	NM_152754	exon16	c.T1841C	p.I614T	TTAGGTATACATT	.	110.0	21.0	110.0	0.0	.	177	.	.	Atlas-SNP
PDK4	5166	hgsc.bcm.edu	hg19	7	95217044	95217044	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PDK4	NM_002612	exon8	c.A865T	p.I289F	CCTTAATGGTAAG	.	111.0	26.0	110.0	0.0	.	42	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683981	100683981	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MUC17	NM_001040105	exon3	c.T9284G	p.M3095R	CCAGCATGCCAAT	.	75.0	24.0	59.0	0.0	.	804	.	.	Atlas-SNP
DLD	1738	hgsc.bcm.edu	hg19	7	107556141	107556141	+	Missense_Mutation	SNP	C	C	T	rs201652869	bycluster	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	DLD,rectum,carcinoma,0,1	DLD	NM_000108	exon9	c.C875T	p.S292F	ATGTTTCGTAAGT	.	107.0	22.0	94.0	1.0	.	72	.	.	Atlas-SNP
FAM3C	10447	hgsc.bcm.edu	hg19	7	121002990	121002990	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FAM3C	NM_014888	exon7	c.G343T	p.E115X	ATACTTCTCCTGT	.	90.0	23.0	116.0	0.0	.	29	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142563351	142563351	+	Silent	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	EPHB6,NS,carcinoma,+1,1	EPHB6	NM_004445	exon8	c.G1068C	p.R356R	CTACCGGGCCAGT	.	41.0	6.0	64.0	0.0	.	168	.	.	Atlas-SNP
EPHB6	2051	hgsc.bcm.edu	hg19	7	142565796	142565796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	EPHB6,NS,malignant_melanoma,0,1	EPHB6	NM_004445	exon13	c.G1907A	p.S636N	AATACAGCAGCCC	.	259.0	68.0	284.0	0.0	.	168	.	.	Atlas-SNP
GPR124	25960	hgsc.bcm.edu	hg19	8	37688996	37688996	+	Missense_Mutation	SNP	G	G	A	rs372154008		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GPR124	NM_032777	exon8	c.G988A	p.V330M	TGCACCGTGTCCA	.	62.0	22.0	84.0	0.0	.	85	.	.	Atlas-SNP
KIAA0146	23514	hgsc.bcm.edu	hg19	8	48508432	48508432	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KIAA0146	NM_001080394	exon9	c.A1157T	p.E386V	TTTGTGAGAAAGT	.	187.0	46.0	173.0	0.0	.	64	.	.	Atlas-SNP
TOX	9760	hgsc.bcm.edu	hg19	8	59764302	59764302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TOX	NM_014729	exon4	c.G474T	p.M158I	TGGTCTCATGGCT	.	75.0	16.0	62.0	0.0	.	83	.	.	Atlas-SNP
PREX2	80243	hgsc.bcm.edu	hg19	8	69011946	69011946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PREX2	NM_025170	exon23	c.G2583T	p.E861D	TGATGAGCATTTT	.	115.0	24.0	92.0	0.0	.	614	.	.	Atlas-SNP
PMP2	5375	hgsc.bcm.edu	hg19	8	82356797	82356797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	PMP2,NS,carcinoma,0,1	PMP2	NM_002677	exon3	c.C286A	p.Q96K	ATCTCTGCACTTG	.	152.0	64.0	136.0	0.0	.	21	.	.	Atlas-SNP
RAD54B	25788	hgsc.bcm.edu	hg19	8	95384520	95384520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RAD54B	NM_012415	exon15	c.C2611G	p.L871V	GCTTCAGCTGGGA	.	150.0	29.0	107.0	0.0	.	88	.	.	Atlas-SNP
RGS22	26166	hgsc.bcm.edu	hg19	8	101011556	101011556	+	Missense_Mutation	SNP	C	C	G	rs371559852	alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RGS22	NM_015668	exon19	c.G2883C	p.R961S	TTCTAGCCTATTT	.	118.0	27.0	107.0	0.0	.	319	.	.	Atlas-SNP
PKHD1L1	93035	hgsc.bcm.edu	hg19	8	110408332	110408332	+	Silent	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PKHD1L1	NM_177531	exon11	c.T888C	p.D296D	CTTTGATCAGACA	.	90.0	14.0	70.0	0.0	.	522	.	.	Atlas-SNP
TRPS1	7227	hgsc.bcm.edu	hg19	8	116599386	116599386	+	Missense_Mutation	SNP	C	C	T	rs377704400		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TRPS1	NM_014112	exon5	c.G2542A	p.A848T	GGGCGGCCTCCAC	.	89.0	35.0	77.0	0.0	.	516	.	.	Atlas-SNP
LRRC14	9684	hgsc.bcm.edu	hg19	8	145746557	145746557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	LRRC14,NS,carcinoma,0,1	LRRC14	NM_001272036	exon5	c.G1177A	p.A393T	CAGTGCGCCAGTC	.	58.0	20.0	59.0	0.0	.	25	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	711564	711564	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KANK1	NM_001256876	exon7	c.G798T	p.Q266H	CGAGCAGATGGCC	.	70.0	11.0	66.0	0.0	.	231	.	.	Atlas-SNP
KANK1	23189	hgsc.bcm.edu	hg19	9	713298	713298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KANK1	NM_001256876	exon7	c.C2532A	p.N844K	TGAGAACTACAGT	.	113.0	27.0	115.0	0.0	.	231	.	.	Atlas-SNP
C9orf131	138724	hgsc.bcm.edu	hg19	9	35044802	35044802	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C9orf131	NM_203299	exon2	c.C2176T	p.L726L	GATCCCCTACACC	.	67.0	11.0	61.0	0.0	.	71	.	.	Atlas-SNP
ALDOB	229	hgsc.bcm.edu	hg19	9	104187850	104187850	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ALDOB	NM_000035	exon7	c.G684A	p.L228L	CTTTAGCAGGGTG	.	70.0	12.0	90.0	0.0	.	69	.	.	Atlas-SNP
TNFSF15	9966	hgsc.bcm.edu	hg19	9	117554792	117554792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TNFSF15	NM_001204344	exon1	c.C19A	p.R7S	GAAGACGGCCCTT	.	54.0	10.0	52.0	0.0	.	23	.	.	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	hg19	9	139333590	139333590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	INPP5E	NM_019892	exon1	c.G282T	p.R94S	AAAACGCCTCCTC	.	395.0	101.0	518.0	0.0	.	18	.	.	Atlas-SNP
FAM208B	54906	hgsc.bcm.edu	hg19	10	5791217	5791217	+	Silent	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	NM_017782	exon15	c.A5833C	p.R1945R	GGCCTGAGGAGGC	.	87.0	23.0	81.0	0.0	.	.	.	.	Atlas-SNP
FBXO18	84893	hgsc.bcm.edu	hg19	10	5945032	5945032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FBXO18	NM_032807	exon3	c.G204C	p.L68F	GCATTTGGCTCGG	.	96.0	29.0	119.0	0.0	.	108	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17113474	17113474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CUBN	NM_001081	exon19	c.C2576T	p.T859I	AAGACAGTGAAGT	.	103.0	21.0	134.0	0.0	.	515	.	.	Atlas-SNP
NRP1	8829	hgsc.bcm.edu	hg19	10	33619799	33619799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NRP1	NM_001244973	exon2	c.G85A	p.D29N	TAGTATCGCCACA	.	148.0	28.0	117.0	0.0	.	126	.	.	Atlas-SNP
GPRIN2	9721	hgsc.bcm.edu	hg19	10	46999960	46999960	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GPRIN2	NM_014696	exon3	c.G1080T	p.L360L	AGCCCTGCATGTG	.	61.0	9.0	84.0	0.0	.	94	.	.	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48383926	48383926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RBP3	NM_002900	exon3	c.A3306C	p.E1102D	AGGGCCTTCATCA	.	78.0	26.0	136.0	0.0	.	152	.	.	Atlas-SNP
OBFC1	79991	hgsc.bcm.edu	hg19	10	105658711	105658711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OBFC1	NM_024928	exon6	c.G505A	p.E169K	GCAGCTCAAGCAT	.	79.0	23.0	132.0	0.0	.	33	.	.	Atlas-SNP
ZRANB1	54764	hgsc.bcm.edu	hg19	10	126631222	126631222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZRANB1	NM_017580	exon1	c.G160T	p.D54Y	GATTGGGATCCTT	.	123.0	11.0	219.0	0.0	.	60	.	.	Atlas-SNP
OR51A7	119687	hgsc.bcm.edu	hg19	11	4929380	4929380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OR51A7	NM_001004749	exon1	c.C781T	p.H261Y	GCCATGCATCACT	.	84.0	34.0	97.0	0.0	.	86	.	.	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	hg19	11	55655563	55655563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	NM_032681	exon4	c.C563A	p.A188E	TGCCTGCATTTCT	.	397.0	112.0	379.0	0.0	.	.	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62288122	62288122	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	AHNAK	NM_001620	exon5	c.G13767A	p.K4589K	CGGTGCCTTGAGG	.	90.0	20.0	98.0	0.0	.	532	.	.	Atlas-SNP
TUT1	64852	hgsc.bcm.edu	hg19	11	62344401	62344401	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TUT1	NM_022830	exon7	c.G1473T	p.V491V	CTGGGACACAGTG	.	137.0	35.0	157.0	0.0	.	122	.	.	Atlas-SNP
FLRT1	23769	hgsc.bcm.edu	hg19	11	63883778	63883778	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FLRT1	NM_013280	exon2	c.G39A	p.T13T	CACCACGCCCACT	.	29.0	8.0	31.0	0.0	.	46	.	.	Atlas-SNP
RPS6KA4	8986	hgsc.bcm.edu	hg19	11	64138858	64138858	+	Missense_Mutation	SNP	G	G	T	rs111697527		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RPS6KA4	NM_003942	exon17	c.G2225T	p.R742L	CCTCCCGCCGGGG	.	126.0	22.0	169.0	0.0	.	85	.	T|1.000;|0.000	Atlas-SNP
VPS51	738	hgsc.bcm.edu	hg19	11	64863897	64863897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	NM_013265	exon1	c.G175T	p.D59Y	CCCCTGGACCCGA	.	141.0	44.0	155.0	0.0	.	.	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73760482	73760482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C2CD3	NM_015531	exon27	c.G5261T	p.C1754F	CCCTGGCACTCTC	.	90.0	28.0	99.0	0.0	.	288	.	.	Atlas-SNP
OR10G9	219870	hgsc.bcm.edu	hg19	11	123893761	123893761	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OR10G9	NM_001001953	exon1	c.C42A	p.G14G	CACGGGCCTTCCC	.	220.0	46.0	215.0	0.0	.	80	.	.	Atlas-SNP
OR8A1	390275	hgsc.bcm.edu	hg19	11	124440061	124440061	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OR8A1	NM_001005194	exon1	c.G97C	p.G33R	CTCAAGGGTTTAA	.	72.0	15.0	86.0	0.0	.	61	.	.	Atlas-SNP
PRMT8	56341	hgsc.bcm.edu	hg19	12	3701519	3701519	+	Splice_Site	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PRMT8	NM_001256536	exon9	c.1074+1G>A	.	AATGTGGTAAGTG	.	66.0	17.0	76.0	0.0	.	97	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9349002	9349002	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PZP	NM_002864	exon10	c.T1016A	p.I339N	TTTGTGATTTCAC	.	54.0	8.0	62.0	0.0	.	422	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9356498	9356498	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PZP	NM_002864	exon2	c.A133T	p.K45X	AGCCCTTCTTAGG	.	131.0	33.0	125.0	0.0	.	422	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46285641	46285641	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	ARID2,NS,carcinoma,0,1	ARID2	NM_152641	exon17	c.T5001A	p.C1667X	GCAGTGTCTTTGG	.	90.0	29.0	154.0	0.0	.	311	.	.	Atlas-SNP
ESPL1	9700	hgsc.bcm.edu	hg19	12	53684210	53684210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ESPL1	NM_012291	exon24	c.G5321A	p.R1774Q	ACAAGCGAGAATG	.	38.0	8.0	57.0	0.0	.	158	.	.	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	hg19	12	63061108	63061108	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PPM1H	NM_020700	exon9	c.T1247A	p.V416E	ATTCTTACCTGAA	.	42.0	12.0	36.0	0.0	.	42	.	.	Atlas-SNP
TMEM19	55266	hgsc.bcm.edu	hg19	12	72083445	72083445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TMEM19	NM_018279	exon2	c.C205A	p.L69I	AATGGCCTTAAAA	.	103.0	40.0	133.0	0.0	.	35	.	.	Atlas-SNP
EEA1	8411	hgsc.bcm.edu	hg19	12	93213181	93213181	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EEA1	NM_003566	exon14	c.A1631G	p.K544R	CTTTCTTTTTCTA	.	110.0	24.0	122.0	0.0	.	104	.	.	Atlas-SNP
CCDC41	51134	hgsc.bcm.edu	hg19	12	94772626	94772626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CCDC41	NM_016122	exon7	c.G742A	p.A248T	TTTGGGCATTTTC	.	125.0	26.0	96.0	0.0	.	59	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109616910	109616910	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ACACB	NM_001093	exon9	c.A1455G	p.P485P	GATCCCAGGCTCG	.	52.0	11.0	82.0	0.0	.	330	.	.	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112926248	112926248	+	Missense_Mutation	SNP	G	G	T	rs121918468	alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	PTPN11,NS,carcinoma,-1,1	PTPN11	NM_002834	exon12	c.G1381T	p.A461S	CGCAGTGCTGGAA	.	60.0	13.0	59.0	0.0	.	623	.	.	Atlas-SNP
CAMKK2	10645	hgsc.bcm.edu	hg19	12	121687622	121687622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CAMKK2	NM_153500	exon13	c.C1291T	p.P431S	ACTCGGGGTTCTT	.	93.0	16.0	99.0	0.0	.	87	.	.	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	hg19	12	121947514	121947514	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KDM2B	NM_032590	exon11	c.G1503C	p.E501D	AGAGACCTCCGTG	.	76.0	24.0	114.0	0.0	.	218	.	.	Atlas-SNP
AMER2	219287	hgsc.bcm.edu	hg19	13	25744099	25744099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	NM_152704	exon1	c.C1659A	p.D553E	GAGCGCGTCCCCG	.	46.0	13.0	52.0	0.0	.	.	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39438522	39438522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FREM2	NM_207361	exon16	c.G7762T	p.E2588X	TATACTGAAGTGA	.	128.0	24.0	138.0	0.0	.	385	.	.	Atlas-SNP
KBTBD6	89890	hgsc.bcm.edu	hg19	13	41705442	41705442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KBTBD6	NM_152903	exon1	c.G1206T	p.R402S	GTCTGTCCTGGGC	.	99.0	28.0	128.0	0.0	.	83	.	.	Atlas-SNP
FRMD6	122786	hgsc.bcm.edu	hg19	14	52174893	52174893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	FRMD6	NM_001267046	exon7	c.A656G	p.Y219C	TTAAATATATCAA	.	69.0	22.0	121.0	0.0	.	100	.	.	Atlas-SNP
MAP3K9	4293	hgsc.bcm.edu	hg19	14	71216737	71216737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MAP3K9	NM_033141	exon4	c.T1063G	p.L355V	CTGCTAAGCCATC	.	126.0	43.0	213.0	0.0	.	109	.	.	Atlas-SNP
VPS39	23339	hgsc.bcm.edu	hg19	15	42453011	42453011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	VPS39	NM_015289	exon25	c.C2569T	p.P857S	CATTGGGGTATCT	.	110.0	21.0	117.0	0.0	.	53	.	.	Atlas-SNP
SPATA8	145946	hgsc.bcm.edu	hg19	15	97326945	97326945	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SPATA8	NM_173499	exon1	c.C60A	p.A20A	AATTGCCCCCTCT	.	80.0	22.0	99.0	0.0	.	42	.	.	Atlas-SNP
BBS2	583	hgsc.bcm.edu	hg19	16	56539942	56539942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	BBS2	NM_031885	exon7	c.A724G	p.N242D	CATGATTTTTCGA	.	68.0	25.0	105.0	0.0	.	67	.	.	Atlas-SNP
PSKH1	5681	hgsc.bcm.edu	hg19	16	67942761	67942761	+	Missense_Mutation	SNP	C	C	T	rs374100286		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PSKH1	NM_006742	exon2	c.C109T	p.H37Y	TACAAGCACTTCA	.	97.0	35.0	168.0	0.0	.	28	.	.	Atlas-SNP
SNAI3	333929	hgsc.bcm.edu	hg19	16	88747782	88747782	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SNAI3	NM_178310	exon2	c.G417T	p.L139L	CCCAAGCAGTTTT	.	64.0	21.0	111.0	0.0	.	23	.	.	Atlas-SNP
PITPNM3	83394	hgsc.bcm.edu	hg19	17	6386917	6386917	+	Silent	SNP	G	G	A	rs367702668	alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PITPNM3	NM_031220	exon6	c.C507T	p.F169F	AGCAGGGAAATGG	.	67.0	29.0	126.0	0.0	.	91	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577570	7577570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	TP53_ENST00000545858,NS,adenocarcinoma,0,1	TP53	NM_000546	exon7	c.G711T	p.M237I	GTTACACATGTAG	.	51.0	22.0	88.0	0.0	.	33396	.	.	Atlas-SNP
PER1	5187	hgsc.bcm.edu	hg19	17	8053380	8053380	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PER1	NM_002616	exon4	c.G438C	p.K146N	TCGAAGCTTGAGC	.	41.0	16.0	85.0	0.0	.	104	.	.	Atlas-SNP
MYH13	8735	hgsc.bcm.edu	hg19	17	10227448	10227448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MYH13	NM_003802	exon23	c.C2825A	p.A942D	TTCTTGGCAACCA	.	65.0	19.0	103.0	0.0	.	533	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18036653	18036653	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MYO15A	NM_016239	exon11	c.C4435T	p.L1479L	CGCATCCTGGCCT	.	57.0	18.0	60.0	0.0	.	268	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34923515	34923515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GGNBP2	NM_024835	exon6	c.G541A	p.D181N	TGGATGGATGTAT	.	203.0	38.0	248.0	0.0	.	72	.	.	Atlas-SNP
GGNBP2	79893	hgsc.bcm.edu	hg19	17	34945736	34945736	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	GGNBP2	NM_024835	exon14	c.A1989T	p.E663D	TAGAGAACAATAC	.	132.0	24.0	113.0	0.0	.	72	.	.	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	hg19	17	43516880	43516880	+	Missense_Mutation	SNP	C	C	A	rs200261737	bycluster;alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PLEKHM1	NM_014798	exon11	c.G3022T	p.D1008Y	TGATGTCGTGGTG	.	54.0	12.0	56.0	0.0	.	69	.	C|0.999;T|0.001	Atlas-SNP
TBC1D16	125058	hgsc.bcm.edu	hg19	17	77921558	77921558	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	TBC1D16,colon,carcinoma,0,1	TBC1D16	NM_019020	exon9	c.G1614A	p.A538A	GATGGGCGCCACC	.	127.0	36.0	148.0	0.0	.	48	.	.	Atlas-SNP
METRNL	284207	hgsc.bcm.edu	hg19	17	81052084	81052084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	METRNL	NM_001004431	exon4	c.C700T	p.R234W	CTCTATCGGCAGA	.	155.0	44.0	212.0	0.0	.	29	.	.	Atlas-SNP
PTPRM	5797	hgsc.bcm.edu	hg19	18	8370961	8370961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PTPRM	NM_001105244	exon24	c.A3128T	p.E1043V	AAACAGAACTACT	.	98.0	29.0	107.0	0.0	.	185	.	.	Atlas-SNP
TTC39C	125488	hgsc.bcm.edu	hg19	18	21660787	21660787	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	TTC39C_ENST00000317571,NS,neuroblastoma,0,2	TTC39C	NM_001135993	exon5	c.G699A	p.V233V	CATGGTGCCCCCA	.	106.0	34.0	95.0	0.0	.	83	.	.	Atlas-SNP
ZNF521	25925	hgsc.bcm.edu	hg19	18	22805355	22805355	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZNF521	NM_015461	exon4	c.G2527T	p.G843X	TTGTTCCACAGTT	.	114.0	26.0	127.0	0.0	.	269	.	.	Atlas-SNP
NOL4	8715	hgsc.bcm.edu	hg19	18	31709985	31709985	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NOL4	NM_001198546	exon3	c.265-1G>T	.	GCCATCCTGGAAA	.	85.0	20.0	105.0	0.0	.	139	.	.	Atlas-SNP
NFATC1	4772	hgsc.bcm.edu	hg19	18	77170794	77170794	+	Silent	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NFATC1	NM_006162	exon2	c.G519T	p.P173P	GAGCCCGGCCAGC	.	42.0	14.0	58.0	0.0	.	105	.	.	Atlas-SNP
EVI5L	115704	hgsc.bcm.edu	hg19	19	7923102	7923102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EVI5L	NM_001159944	exon12	c.C1259T	p.A420V	AGGAGGCGGAGGA	.	148.0	35.0	186.0	0.0	.	43	.	.	Atlas-SNP
MAP2K7	5609	hgsc.bcm.edu	hg19	19	7975602	7975602	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MAP2K7	NM_145185	exon6	c.G589T	p.E197X	GCCATGGAGCTCA	.	108.0	22.0	105.0	0.0	.	66	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9058023	9058023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MUC16	NM_024690	exon3	c.C29423T	p.P9808L	GAGGAAGGATGAA	.	128.0	37.0	148.0	0.0	.	4315	.	.	Atlas-SNP
OR7G3	390883	hgsc.bcm.edu	hg19	19	9237267	9237267	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	OR7G3	NM_001001958	exon1	c.T360C	p.Y120Y	TCGATCATAGGCC	.	116.0	24.0	152.0	0.0	.	41	.	.	Atlas-SNP
RAVER1	125950	hgsc.bcm.edu	hg19	19	10439536	10439536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	RAVER1	NM_133452	exon3	c.T589C	p.Y197H	TCATGTACTCAGC	.	108.0	28.0	137.0	0.0	.	67	.	.	Atlas-SNP
C19orf80	55908	hgsc.bcm.edu	hg19	19	11352206	11352206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C19orf80	NM_018687	exon3	c.A545G	p.H182R	AGCAGCATCGGCT	.	87.0	19.0	113.0	0.0	.	8	.	.	Atlas-SNP
ZNF442	79973	hgsc.bcm.edu	hg19	19	12461479	12461479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZNF442	NM_030824	exon6	c.C920T	p.S307F	CGAAGGGAACTGG	.	98.0	25.0	78.0	0.0	.	102	.	.	Atlas-SNP
TECR	9524	hgsc.bcm.edu	hg19	19	14674897	14674897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TECR	NM_138501	exon6	c.A371G	p.H124R	GTCGGCATACAGT	.	30.0	7.0	39.0	0.0	.	22	.	.	Atlas-SNP
ZNF93	81931	hgsc.bcm.edu	hg19	19	20044671	20044671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZNF93	NM_031218	exon4	c.C907T	p.H303Y	ACTAAACATAAGA	.	50.0	9.0	64.0	0.0	.	81	.	.	Atlas-SNP
HNRNPL	3191	hgsc.bcm.edu	hg19	19	39330912	39330912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	HNRNPL	NM_001533	exon8	c.C1057T	p.R353C	CCCGACGGTGACC	.	129.0	8.0	127.0	0.0	.	67	.	.	Atlas-SNP
EGLN2	112398	hgsc.bcm.edu	hg19	19	41313170	41313170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EGLN2	NM_053046	exon4	c.A1091G	p.Y364C	CAGCCTATGCCAC	.	55.0	15.0	57.0	0.0	.	31	.	.	Atlas-SNP
LIPE	3991	hgsc.bcm.edu	hg19	19	42909571	42909571	+	Silent	SNP	C	C	T	rs148306456	byfrequency;alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	LIPE	NM_005357	exon8	c.G2508A	p.G836G	CTTGCGCCCACTT	.	84.0	13.0	89.0	0.0	.	83	.	C|1.000;A|0.000	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51175305	51175305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	SHANK1,rectum,carcinoma,0,1	SHANK1	NM_016148	exon21	c.C2644T	p.P882S	ACCCAGGTCCTGG	.	98.0	23.0	86.0	1.0	.	210	.	.	Atlas-SNP
NLRP12	91662	hgsc.bcm.edu	hg19	19	54313287	54313287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NLRP12	NM_144687	exon3	c.G1626T	p.L542F	CAGCCTGGTCACG	.	69.0	14.0	67.0	0.0	.	236	.	.	Atlas-SNP
STK35	140901	hgsc.bcm.edu	hg19	20	2083558	2083558	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	STK35	NM_080836	exon2	c.A439C	p.S147R	ACACAAAGCCCGG	.	13.0	7.0	11.0	0.0	.	31	.	.	Atlas-SNP
CHD6	84181	hgsc.bcm.edu	hg19	20	40050513	40050513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CHD6	NM_032221	exon31	c.A4762G	p.T1588A	TGGCAGTGCCGAT	.	84.0	23.0	95.0	0.0	.	312	.	.	Atlas-SNP
SRSF6	6431	hgsc.bcm.edu	hg19	20	42088512	42088512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SRSF6	NM_006275	exon3	c.C358T	p.R120W	TCTAGTCGGTGCA	.	94.0	26.0	135.0	0.0	.	37	.	.	Atlas-SNP
WISP2	8839	hgsc.bcm.edu	hg19	20	43355822	43355822	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	WISP2	NM_003881	exon4	c.G627A	p.G209G	CTGTGGGCTGGGC	.	60.0	14.0	81.0	0.0	.	28	.	.	Atlas-SNP
SAMSN1	64092	hgsc.bcm.edu	hg19	21	15858279	15858279	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SAMSN1	NM_001256370	exon9	c.T1280G	p.L427R	TCAGACAGATTTT	.	67.0	14.0	84.0	0.0	.	112	.	.	Atlas-SNP
C21orf59	56683	hgsc.bcm.edu	hg19	21	33984425	33984425	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	C21orf59	NM_021254	exon1	c.C129T	p.R43R	GCAGAGGCGCTGC	.	82.0	21.0	86.0	0.0	.	11	.	.	Atlas-SNP
DOPEY2	9980	hgsc.bcm.edu	hg19	21	37603416	37603416	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	DOPEY2	NM_005128	exon14	c.G2334A	p.T778T	TGCAACGCTCTTC	.	108.0	22.0	106.0	0.0	.	184	.	.	Atlas-SNP
KRTAP10-12	386685	hgsc.bcm.edu	hg19	21	46117302	46117302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	KRTAP10-12	NM_198699	exon1	c.C186A	p.C62X	CCCCTGCTGCCGA	.	64.0	13.0	44.0	0.0	.	21	.	.	Atlas-SNP
MAPK1	5594	hgsc.bcm.edu	hg19	22	22221631	22221631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	MAPK1	NM_002745	exon1	c.G100T	p.G34C	AGGCGCCCTCGCC	.	42.0	10.0	72.0	0.0	.	38	.	.	Atlas-SNP
MCHR1	2847	hgsc.bcm.edu	hg19	22	41077826	41077826	+	Missense_Mutation	SNP	G	G	A	rs199697488		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	MCHR1,caecum,carcinoma,0,3	MCHR1	NM_005297	exon2	c.G1163A	p.R388H	CGTTCCGCAAACG	.	53.0	16.0	51.0	0.0	.	45	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	43986003	43986003	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EFCAB6	NM_022785	exon24	c.G2983C	p.E995Q	CACATTCTTCCAG	.	130.0	33.0	142.0	0.0	.	177	.	.	Atlas-SNP
EFCAB6	64800	hgsc.bcm.edu	hg19	22	44168801	44168801	+	Nonsense_Mutation	SNP	G	G	A	rs372200947		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	EFCAB6	NM_022785	exon4	c.C322T	p.R108X	GTTCTCGTGTGAG	.	88.0	27.0	121.0	0.0	.	177	.	.	Atlas-SNP
LDOC1L	84247	hgsc.bcm.edu	hg19	22	44893314	44893314	+	Silent	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	LDOC1L	NM_032287	exon2	c.G123T	p.R41R	AGCCTCCCGCCTC	.	72.0	11.0	70.0	0.0	.	24	.	.	Atlas-SNP
ARSA	410	hgsc.bcm.edu	hg19	22	51065813	51065813	+	Silent	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ARSA	NM_001085426	exon3	c.G246A	p.R82R	CGGGAGCCGGCCG	.	87.0	19.0	79.0	0.0	.	19	.	.	Atlas-SNP
ZRSR2	8233	hgsc.bcm.edu	hg19	X	15809111	15809111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ZRSR2	NM_005089	exon2	c.G96T	p.Q32H	TCGGCAGGAACTT	.	214.0	104.0	226.0	0.0	.	78	.	.	Atlas-SNP
CTPS2	56474	hgsc.bcm.edu	hg19	X	16707658	16707658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	CTPS2	NM_001144002	exon8	c.G787T	p.V263L	ATTTCACAATGCT	.	247.0	123.0	283.0	0.0	.	49	.	.	Atlas-SNP
TRO	7216	hgsc.bcm.edu	hg19	X	54949458	54949458	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	TRO	NM_016157	exon3	c.C493T	p.Q165X	ACTATACAGCTGA	.	106.0	58.0	136.0	0.0	.	246	.	.	Atlas-SNP
PFKFB1	5207	hgsc.bcm.edu	hg19	X	54975557	54975557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PFKFB1	NM_002625	exon9	c.C944A	p.A315D	CCCAGGGCCTCAG	.	114.0	70.0	118.0	0.0	.	64	.	.	Atlas-SNP
PFKFB1	5207	hgsc.bcm.edu	hg19	X	54975558	54975558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PFKFB1	NM_002625	exon9	c.G943T	p.A315S	CCAGGGCCTCAGC	.	112.0	69.0	119.0	0.0	.	64	.	.	Atlas-SNP
NLGN3	54413	hgsc.bcm.edu	hg19	X	70375180	70375180	+	Missense_Mutation	SNP	G	G	C	rs201424510	by1000genomes;alternate_allele	TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	NLGN3	NM_181303	exon5	c.G694C	p.V232L	GTCATCGTCATCA	.	73.0	31.0	72.0	0.0	.	159	.	G|1.000;A|0.000	Atlas-SNP
COL4A6	1288	hgsc.bcm.edu	hg19	X	107464563	107464563	+	Silent	SNP	A	A	G	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	COL4A6	NM_001847	exon4	c.T189C	p.P63P	TCCTTGAGGACCT	.	82.0	46.0	102.0	0.0	.	270	.	.	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	7382	7382	+	Silent	SNP	G	G	A	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	.	ENST00000361624	exon1	c.G1479A	p.E493E	CCTGGAGTGACTA	.	13.0	7.0	13.0	0.0	.	.	.	.	Atlas-SNP
ST7	7982	hgsc.bcm.edu	hg19	7	116759650	116759653	+	Frame_Shift_Del	DEL	TTCA	TTCA	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	TTCA	TTCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ST7	NM_018412	exon3	c.269_272del	p.90_91del	.	.	92.0	19.0	80.0	0.0	.	64	.	.	Atlas-INDEL
TSC2	7249	hgsc.bcm.edu	hg19	16	2137899	2137899	+	Frame_Shift_Del	DEL	G	G	-	rs137854382		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	TSC2,NS,other,0,1	TSC2	NM_000548	exon39	c.5024delC	p.P1675fs	.	.	102.0	45.0	171.0	0.0	.	364	.	.	Atlas-INDEL
PER1	5187	hgsc.bcm.edu	hg19	17	8046658	8046694	+	Frame_Shift_Del	DEL	CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG	CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG	CAGCAGCCCCCTCAGCACGGGGGAGCTCCTCCAGCTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PER1	NM_002616	exon19	c.2963_2999del	p.988_1000del	.	.	88.0	19.0	117.0	0.0	.	104	.	.	Atlas-INDEL
PHF14	9678	hgsc.bcm.edu	hg19	7	11076165	11076165	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PHF14	NM_014660	exon9	c.1722delA	p.S574fs	.	.	252.0	54.0	197.0	0.0	.	90	.	.	Atlas-INDEL
PDE11A	50940	hgsc.bcm.edu	hg19	2	178879182	178879194	+	Frame_Shift_Del	DEL	TCGATCCTAAAAA	TCGATCCTAAAAA	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	TCGATCCTAAAAA	TCGATCCTAAAAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PDE11A	NM_016953	exon2	c.913_919del	p.305_307del	.	.	55.0	19.0	48.0	0.0	.	283	.	.	Atlas-INDEL
SYNE1	23345	hgsc.bcm.edu	hg19	6	152690719	152690719	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	SYNE1	NM_033071	exon60	c.9560delT	p.V3187fs	.	.	83.0	18.0	89.0	0.0	.	3227	.	.	Atlas-INDEL
PER1	5187	hgsc.bcm.edu	hg19	17	8049299	8049299	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	PER1	NM_002616	exon17	c.2196delA	p.G732fs	.	.	50.0	17.0	64.0	0.0	.	104	.	.	Atlas-INDEL
ST8SIA5	29906	hgsc.bcm.edu	hg19	18	44260286	44260293	+	Frame_Shift_Del	DEL	TGACCAGG	TGACCAGG	-	novel		TCGA-CC-A8HT-01A-11D-A35Z-10	TCGA-CC-A8HT-10A-01D-A35Z-10	TGACCAGG	TGACCAGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	278e9596-350e-4dc0-be6a-009ab7846250	c14f9d6e-16bb-499c-b83b-d97d1da50b37	.	ST8SIA5	NM_013305	exon7	c.844_851del	p.282_284del	.	.	84.0	18.0	99.0	0.0	.	57	.	.	Atlas-INDEL