Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm UBR4 23352 hgsc.bcm.edu hg19 1 19455517 19455517 + Silent SNP A A C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . UBR4 NM_020765 exon61 c.T8958G p.P2986P TAATTGAGGCAGG . 129.0 38.0 170.0 0.0 . 415 . . Atlas-SNP TCEB3 6924 hgsc.bcm.edu hg19 1 24080866 24080866 + Silent SNP G G A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TCEB3 NM_003198 exon7 c.G1785A p.V595V TGAAGTGGGAGGA . 105.0 34.0 98.0 0.0 . 61 . . Atlas-SNP FUCA1 2517 hgsc.bcm.edu hg19 1 24181042 24181042 + Silent SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . FUCA1 NM_000147 exon5 c.G777T p.V259V TACTACCACCTCA . 63.0 33.0 105.0 0.0 . 24 . . Atlas-SNP LEPRE1 64175 hgsc.bcm.edu hg19 1 43212987 43212987 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . LEPRE1 NM_001146289 exon14 c.G2011A p.A671T CGATGGCACAGCG . 72.0 32.0 84.0 0.0 . 130 . . Atlas-SNP CD101 9398 hgsc.bcm.edu hg19 1 117559864 117559864 + Missense_Mutation SNP G G C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . CD101 NM_001256109 exon5 c.G1381C p.A461P TTTGTGGCTGGCA . 119.0 8.0 142.0 0.0 . 95 . . Atlas-SNP PAQR6 79957 hgsc.bcm.edu hg19 1 156214169 156214169 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PAQR6 NM_024897 exon7 c.C539A p.S180Y TGCACAGATGTGG . 47.0 13.0 32.0 0.0 . 23 . . Atlas-SNP ATP1A2 477 hgsc.bcm.edu hg19 1 160100081 160100081 + Nonsense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ATP1A2 NM_000702 exon12 c.G1651T p.G551X GTGCTGGGTGAGA . 87.0 22.0 79.0 0.0 . 167 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167096907 167096907 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . DUSP27 NM_001080426 exon5 c.C2539T p.L847F ATGGAGCTTAGGG . 150.0 14.0 157.0 0.0 . 235 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176759102 176759102 + Missense_Mutation SNP G G A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PAPPA2 NM_020318 exon18 c.G4873A p.E1625K AACCAGGAACGTG . 111.0 31.0 115.0 0.0 . 665 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179564900 179564900 + Nonsense_Mutation SNP A A T rs183977806 by1000genomes;alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TDRD5 NM_173533 exon4 c.A778T p.K260X ACTTCCAAGTTAA . 353.0 107.0 318.0 0.0 . 149 . A|1.000;G|0.000 Atlas-SNP FAM129A 116496 hgsc.bcm.edu hg19 1 184764697 184764697 + Missense_Mutation SNP G G T rs201876014 by1000genomes;alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . FAM129A NM_052966 exon14 c.C2201A p.T734K CCATTCGTATCTT . 80.0 51.0 60.0 0.0 . 98 . G|1.000;A|0.000 Atlas-SNP C1orf106 55765 hgsc.bcm.edu hg19 1 200877890 200877890 + Missense_Mutation SNP T T G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . C1orf106 NM_018265 exon7 c.T904G p.S302A CCAGAGTCTCCAG . 365.0 45.0 284.0 0.0 . 59 . . Atlas-SNP CR2 1380 hgsc.bcm.edu hg19 1 207649761 207649761 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . CR2 NM_001006658 exon15 c.A2899G p.K967E CATTGTAAAGGTG . 119.0 40.0 96.0 0.0 . 164 . . Atlas-SNP ACTN2 88 hgsc.bcm.edu hg19 1 236925852 236925852 + Missense_Mutation SNP G G A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ACTN2 NM_001103 exon21 c.G2618A p.G873D GCCCAGGCAGTGT . 174.0 102.0 131.0 0.0 . 191 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242052844 242052844 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d EXO1,NS,carcinoma,0,1 EXO1 NM_130398 exon16 c.A2483G p.E828G AAGCGGAAGAGGA . 152.0 47.0 148.0 1.0 . 103 . . Atlas-SNP OR2G6 391211 hgsc.bcm.edu hg19 1 248685216 248685216 + Missense_Mutation SNP A A T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d OR2G6,colon,carcinoma,0,1 OR2G6 NM_001013355 exon1 c.A269T p.K90I AAGACAAAACCAT . 167.0 48.0 153.0 0.0 . 124 . . Atlas-SNP C2orf16 84226 hgsc.bcm.edu hg19 2 27804119 27804119 + Silent SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . C2orf16 NM_032266 exon1 c.C4680T p.N1560N TCATAACCCCTCT . 81.0 42.0 115.0 0.0 . 357 . . Atlas-SNP PLEKHH2 130271 hgsc.bcm.edu hg19 2 43937431 43937431 + Missense_Mutation SNP G G A rs183194066 alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PLEKHH2 NM_172069 exon13 c.G2176A p.V726I TGGTTTGTTCTTA . 128.0 51.0 179.0 0.0 . 156 . . Atlas-SNP EML6 400954 hgsc.bcm.edu hg19 2 55186295 55186295 + Missense_Mutation SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . EML6 NM_001039753 exon33 c.C4750A p.H1584N AAGGACCACTTCC . 63.0 32.0 92.0 0.0 . 85 . . Atlas-SNP IWS1 55677 hgsc.bcm.edu hg19 2 128255759 128255759 + Missense_Mutation SNP C C G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . IWS1 NM_017969 exon6 c.G1522C p.A508P CTTCTGCTTCTTT . 126.0 54.0 199.0 0.0 . 61 . . Atlas-SNP PER2 8864 hgsc.bcm.edu hg19 2 239184411 239184411 + Missense_Mutation SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PER2 NM_022817 exon4 c.G421T p.A141S TGAGGGCGTACTT . 76.0 38.0 129.0 0.0 . 85 . . Atlas-SNP KY 339855 hgsc.bcm.edu hg19 3 134346635 134346635 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KY NM_178554 exon5 c.C363A p.N121K TCTTGTGTTTCCA . 91.0 32.0 125.0 0.0 . 92 . . Atlas-SNP BCHE 590 hgsc.bcm.edu hg19 3 165503966 165503966 + Missense_Mutation SNP T T C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . BCHE NM_000055 exon3 c.A1651G p.T551A ATGATGTCCAGAA . 87.0 45.0 94.0 0.0 . 136 . . Atlas-SNP LRRC66 339977 hgsc.bcm.edu hg19 4 52869443 52869443 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . LRRC66 NM_001024611 exon2 c.C612A p.S204R CTTGTTGCTCTTT . 80.0 5.0 109.0 0.0 . 128 . . Atlas-SNP EIF4E 1977 hgsc.bcm.edu hg19 4 99823068 99823068 + Silent SNP A A C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . EIF4E NM_001130678 exon2 c.T144G p.V48V GTTAGCAACCTCC . 47.0 39.0 132.0 0.0 . 18 . . Atlas-SNP PCDHB6 56130 hgsc.bcm.edu hg19 5 140529886 140529886 + Silent SNP C C T rs143226291 TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PCDHB6 NM_018939 exon1 c.C48T p.F16F TTTCTTCATTTTA . 62.0 16.0 101.0 0.0 . 161 . C|1.000;T|0.000 Atlas-SNP N4BP3 23138 hgsc.bcm.edu hg19 5 177548620 177548620 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . N4BP3 NM_015111 exon5 c.A1253G p.E418G ACGCAGAGCTGGT . 84.0 39.0 104.0 0.0 . 25 . . Atlas-SNP KCNK17 89822 hgsc.bcm.edu hg19 6 39271872 39271872 + Silent SNP G G T rs374325536 alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KCNK17 NM_001135111 exon4 c.C549A p.G183G GAGGGCGCCAGAG . 114.0 60.0 93.0 0.0 . 61 . . Atlas-SNP KIF6 221458 hgsc.bcm.edu hg19 6 39607459 39607459 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KIF6 NM_145027 exon4 c.G326A p.G109E GCACCCCCTGTGA . 103.0 60.0 117.0 0.0 . 233 . . Atlas-SNP ELFN1 392617 hgsc.bcm.edu hg19 7 1785060 1785060 + Silent SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ELFN1 NM_001128636 exon2 c.G828T p.P276P CTCCCCGCCGCCC . 80.0 19.0 72.0 0.0 . 22 . . Atlas-SNP BMPER 168667 hgsc.bcm.edu hg19 7 33945272 33945272 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . BMPER NM_133468 exon2 c.G47T p.R16L ACTGCCGCCGCTC . 73.0 26.0 54.0 0.0 . 131 . . Atlas-SNP SHFM1 7979 hgsc.bcm.edu hg19 7 96324128 96324128 + Missense_Mutation SNP T T A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . SHFM1 NM_006304 exon2 c.A152T p.D51V GAGAAGTCATCCT . 98.0 52.0 115.0 0.0 . 12 . . Atlas-SNP LHFPL3 375612 hgsc.bcm.edu hg19 7 103969251 103969251 + Silent SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC . 38.0 3.0 39.0 0.0 . 24 . . Atlas-SNP SND1 27044 hgsc.bcm.edu hg19 7 127347629 127347629 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . SND1 NM_014390 exon9 c.G966T p.R322S GCGCAGGCTGAGA . 110.0 17.0 93.0 0.0 . 104 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 131848926 131848926 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d PLXNA4_ENST00000359827,NS,carcinoma,0,2 PLXNA4 NM_020911 exon24 c.G4475A p.R1492H TGCTGGCGGATGA . 98.0 23.0 94.0 0.0 . 873 . . Atlas-SNP CSMD1 64478 hgsc.bcm.edu hg19 8 2813254 2813254 + Missense_Mutation SNP G G C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . CSMD1 NM_033225 exon64 c.C9851G p.A3284G ACATCCGCGTGTG . 50.0 41.0 144.0 0.0 . 1469 . . Atlas-SNP TMEM74 157753 hgsc.bcm.edu hg19 8 109796520 109796520 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TMEM74 NM_153015 exon2 c.G808A p.E270K CAGACTCTTTGGA . 144.0 14.0 237.0 0.0 . 70 . . Atlas-SNP C9orf172 389813 hgsc.bcm.edu hg19 9 139739752 139739752 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . C9orf172 NM_001080482 exon1 c.G886T p.A296S TTTGCAGCCAGTC . 51.0 47.0 99.0 0.0 . 23 . . Atlas-SNP RBM17 84991 hgsc.bcm.edu hg19 10 6154319 6154319 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RBM17 NM_001145547 exon8 c.A851G p.E284G CCACAGAGAAAGG . 192.0 76.0 111.0 0.0 . 45 . . Atlas-SNP PTPLA 9200 hgsc.bcm.edu hg19 10 17636234 17636234 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d PTPLA,NS,carcinoma,0,1 PTPLA NM_014241 exon6 c.C754A p.L252I TAAGAAGAAAATA . 487.0 160.0 357.0 0.0 . 34 . . Atlas-SNP RHOBTB1 9886 hgsc.bcm.edu hg19 10 62648855 62648855 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RHOBTB1 NM_014836 exon6 c.T571C p.F191L GGTCAAACACGCT . 62.0 22.0 99.0 0.0 . 61 . . Atlas-SNP PLCE1 51196 hgsc.bcm.edu hg19 10 96066392 96066392 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PLCE1 NM_016341 exon26 c.A5831G p.N1944S AAAACAATAGTTC . 79.0 14.0 119.0 0.0 . 543 . . Atlas-SNP SLC5A12 159963 hgsc.bcm.edu hg19 11 26734192 26734192 + Missense_Mutation SNP T T C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d SLC5A12_ENST00000280467,right_upper_lobe,carcinoma,0,2 SLC5A12 NM_178498 exon2 c.A401G p.Q134R ACCGTCTGTACAA . 79.0 37.0 114.0 0.0 . 134 . . Atlas-SNP GYLTL1B 120071 hgsc.bcm.edu hg19 11 45949843 45949843 + Nonsense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . GYLTL1B NM_152312 exon13 c.C1870T p.R624X GTGCCACGAGACT . 82.0 46.0 115.0 0.0 . 45 . . Atlas-SNP KRTAP5-10 387273 hgsc.bcm.edu hg19 11 71277043 71277043 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KRTAP5-10 NM_001012710 exon1 c.G410T p.C137F GTTCTTGTGGCTG . 70.0 39.0 184.0 0.0 . 37 . . Atlas-SNP KLHL35 283212 hgsc.bcm.edu hg19 11 75139638 75139638 + Silent SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KLHL35 NM_001039548 exon2 c.C915A p.I305I ACCGCCGATGACC . 18.0 16.0 48.0 0.0 . 15 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92532846 92532846 + Missense_Mutation SNP A A T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . FAT3 NM_001008781 exon9 c.A6667T p.I2223F ATCATTATCGATG . 35.0 26.0 63.0 0.0 . 1822 . . Atlas-SNP GUCY1A2 2977 hgsc.bcm.edu hg19 11 106810453 106810453 + Silent SNP A A T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . GUCY1A2 NM_000855 exon4 c.T939A p.P313P GTCCGCAGGAACT . 61.0 49.0 129.0 0.0 . 180 . . Atlas-SNP ELMOD1 55531 hgsc.bcm.edu hg19 11 107526740 107526740 + Missense_Mutation SNP C C G rs190625125 by1000genomes;alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d ELMOD1,NS,carcinoma,0,1 ELMOD1 NM_018712 exon11 c.C780G p.F260L CCATTTCTACAAT . 28.0 25.0 81.0 0.0 . 40 . C|1.000;T|0.000 Atlas-SNP ABCG4 64137 hgsc.bcm.edu hg19 11 119025505 119025505 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ABCG4 NM_022169 exon6 c.G566T p.G189V CACTGGGCCTGAT . 33.0 29.0 87.0 0.0 . 77 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133794761 133794761 + Silent SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . IGSF9B NM_014987 exon15 c.G2073A p.Q691Q CAGATCCTGCATG . 15.0 13.0 46.0 0.0 . 290 . . Atlas-SNP PLXNC1 10154 hgsc.bcm.edu hg19 12 94692459 94692459 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PLXNC1 NM_005761 exon27 c.C4126T p.P1376S AGTTTACCCAACA . 169.0 32.0 155.0 0.0 . 135 . . Atlas-SNP N6AMT2 221143 hgsc.bcm.edu hg19 13 21306081 21306081 + Missense_Mutation SNP T T A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . N6AMT2 NM_174928 exon4 c.A407T p.D136V ACGATGTCAAAAC . 1065.0 43.0 109.0 0.0 . 26 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 48881475 48881475 + Missense_Mutation SNP T T A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RB1 NM_000321 exon2 c.T197A p.I66K TAAAGATACCAGA . 54.0 41.0 195.0 0.0 . 1068 . . Atlas-SNP RB1 5925 hgsc.bcm.edu hg19 13 48881477 48881477 + Missense_Mutation SNP C C G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RB1 NM_000321 exon2 c.C199G p.P67A AAGATACCAGATC . 54.0 43.0 195.0 0.0 . 1068 . . Atlas-SNP METTL21C 196541 hgsc.bcm.edu hg19 13 103338746 103338746 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . METTL21C NM_001010977 exon4 c.G430A p.D144N GGACATCAGGCAA . 187.0 33.0 82.0 0.0 . 23 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24884995 24884995 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . NYNRIN NM_025081 exon9 c.C4040T p.P1347L GCTCCCCTTACAC . 49.0 24.0 82.0 0.0 . 120 . . Atlas-SNP DYNC1H1 1778 hgsc.bcm.edu hg19 14 102467511 102467511 + Silent SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . DYNC1H1 NM_001376 exon20 c.C4215T p.S1405S GAAATCCGAAGCA . 81.0 44.0 196.0 0.0 . 395 . . Atlas-SNP ISL2 64843 hgsc.bcm.edu hg19 15 76632778 76632778 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ISL2 NM_145805 exon4 c.G673T p.V225L CAGCTGGTGGAGA . 151.0 62.0 192.0 0.0 . 20 . . Atlas-SNP MEFV 4210 hgsc.bcm.edu hg19 16 3297138 3297138 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . MEFV NM_000243 exon5 c.C1465A p.Q489K CCATCTGGCCCAC . 100.0 4.0 111.0 0.0 . 170 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577534 7577534 + Missense_Mutation SNP C C A rs28934571 bycluster TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d TP53_ENST00000455263,right_lower_lobe,carcinoma,-2,1 TP53 NM_000546 exon7 c.G747T p.R249S GATGGGCCTCCGG . 47.0 36.0 115.0 1.0 . 33396 . . Atlas-SNP LSMD1 84316 hgsc.bcm.edu hg19 17 7760598 7760598 + Missense_Mutation SNP G G C rs201706296 alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . LSMD1 NM_032356 exon1 c.C144G p.C48W CGCGGGGCACTCA . 39.0 32.0 106.0 0.0 . 8 . G|0.999;A|0.001 Atlas-SNP LIG3 3980 hgsc.bcm.edu hg19 17 33319683 33319683 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . LIG3 NM_013975 exon8 c.C1427T p.S476L AGGCCTCGCTGAT . 61.0 22.0 84.0 0.0 . 164 . . Atlas-SNP KRTAP4-4 84616 hgsc.bcm.edu hg19 17 39316584 39316584 + Silent SNP G G A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . KRTAP4-4 NM_032524 exon1 c.C360T p.C120C GCAGCAGCAGGTG . 93.0 44.0 105.0 0.0 . 21 . . Atlas-SNP TRIM25 7706 hgsc.bcm.edu hg19 17 54981814 54981814 + Missense_Mutation SNP T T G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TRIM25 NM_005082 exon3 c.A729C p.Q243H GTATTCTTGTTGT . 92.0 32.0 76.0 0.0 . 52 . . Atlas-SNP TTYH2 94015 hgsc.bcm.edu hg19 17 72218751 72218751 + Missense_Mutation SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TTYH2 NM_032646 exon2 c.C257A p.S86Y ACCACTCCTGCTG . 82.0 20.0 39.0 0.0 . 63 . . Atlas-SNP DNAH17 8632 hgsc.bcm.edu hg19 17 76503830 76503830 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . DNAH17 NM_173628 exon28 c.C4294A p.P1432T TCCGCGGGTGCGG . 27.0 18.0 31.0 0.0 . 347 . . Atlas-SNP TPGS2 25941 hgsc.bcm.edu hg19 18 34385439 34385439 + Missense_Mutation SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . . NM_001271954 exon4 c.G280T p.A94S TAATTGCCATGCT . 97.0 43.0 156.0 0.0 . . . . Atlas-SNP MADCAM1 8174 hgsc.bcm.edu hg19 19 497839 497839 + Missense_Mutation SNP C C G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . MADCAM1 NM_130760 exon2 c.C59G p.S20C GCCAGTCCCTCCA . 10.0 6.0 3.0 0.0 . 29 . . Atlas-SNP PRSS57 400668 hgsc.bcm.edu hg19 19 687062 687062 + Nonsense_Mutation SNP C C A rs376121318 TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PRSS57 NM_214710 exon4 c.G508T p.E170X GCAGCTCCTCAAA . 148.0 59.0 256.0 1.0 . 18 . . Atlas-SNP SYDE1 85360 hgsc.bcm.edu hg19 19 15224669 15224669 + Silent SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . SYDE1 NM_033025 exon8 c.C2103T p.D701D CGAAGACGACTTC . 81.0 17.0 113.0 0.0 . 44 . . Atlas-SNP RPS16 6217 hgsc.bcm.edu hg19 19 39926515 39926515 + Silent SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RPS16 NM_001020 exon1 c.G21T p.L7L AGACTGCAGCGGG . 40.0 29.0 37.0 0.0 . 12 . . Atlas-SNP GGTLC1 92086 hgsc.bcm.edu hg19 20 23966368 23966368 + Missense_Mutation SNP T T C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . GGTLC1 NM_178311 exon5 c.A467G p.E156G GGCTCCTCCACGG . 63.0 41.0 52.0 0.0 . 37 . . Atlas-SNP POFUT1 23509 hgsc.bcm.edu hg19 20 30818724 30818724 + Missense_Mutation SNP A A G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . POFUT1 NM_015352 exon6 c.A838G p.M280V CTCACGATGACTA . 120.0 5.0 104.0 0.0 . 52 . . Atlas-SNP GNAS 2778 hgsc.bcm.edu hg19 20 57429286 57429286 + Missense_Mutation SNP C C T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d GNAS_ENST00000371100,NS,carcinoma,0,1 GNAS NM_001077490 exon1 c.C779T p.P260L CACTCCCGTCAAC . 194.0 103.0 115.0 0.0 . 867 . . Atlas-SNP DIP2A 23181 hgsc.bcm.edu hg19 21 47976001 47976001 + Silent SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . DIP2A NM_015151 exon29 c.G3495T p.V1165V GGGAGTGAAGGTA . 71.0 18.0 109.0 0.0 . 332 . . Atlas-SNP POTEH 23784 hgsc.bcm.edu hg19 22 16287880 16287880 + Silent SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . POTEH NM_001136213 exon1 c.G6T p.V2V CTCAGCCACCATC . 507.0 111.0 727.0 1.0 . 114 . . Atlas-SNP SREBF2 6721 hgsc.bcm.edu hg19 22 42273342 42273342 + Missense_Mutation SNP C C G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . SREBF2 NM_004599 exon8 c.C1496G p.S499C TGACTTCCCTGCT . 73.0 42.0 101.0 0.0 . 99 . . Atlas-SNP MSL3 10943 hgsc.bcm.edu hg19 X 11790751 11790751 + Missense_Mutation SNP G G A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . MSL3 NM_078629 exon12 c.G1393A p.E465K CTTCCAGAAATCC . 203.0 121.0 246.0 0.0 . 88 . . Atlas-SNP CXorf58 254158 hgsc.bcm.edu hg19 X 23928463 23928463 + Nonsense_Mutation SNP C C G novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . CXorf58 NM_152761 exon2 c.C44G p.S15X TGAAATCAGGTAC . 374.0 204.0 381.0 0.0 . 53 . . Atlas-SNP MAGED1 9500 hgsc.bcm.edu hg19 X 51638488 51638488 + Missense_Mutation SNP T T C novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . MAGED1 NM_001005333 exon4 c.T553C p.S185P GATTTTTCCCAGG . 178.0 42.0 196.0 0.0 . 84 . . Atlas-SNP PHF8 23133 hgsc.bcm.edu hg19 X 54013589 54013589 + Silent SNP G G A rs148356929 alternate_allele TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . PHF8 NM_001184896 exon16 c.C2025T p.P675P TTTCCGGGGAAAT . 153.0 86.0 173.0 0.0 . 198 . G|1.000;C|0.000 Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765551 66765551 + Missense_Mutation SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . AR NM_000044 exon1 c.C563A p.A188D GCGAGGCCAGCAC . 172.0 58.0 156.0 0.0 . 249 . . Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66765552 66765552 + Silent SNP C C A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . AR NM_000044 exon1 c.C564A p.A188A CGAGGCCAGCACC . 170.0 57.0 157.0 0.0 . 249 . . Atlas-SNP TAF1 6872 hgsc.bcm.edu hg19 X 70598216 70598216 + Silent SNP T T A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . TAF1 NM_004606 exon7 c.T1125A p.G375G GCTGGGTGTCCCT . 227.0 56.0 258.0 0.0 . 439 . . Atlas-SNP RBMXL3 139804 hgsc.bcm.edu hg19 X 114426238 114426238 + Missense_Mutation SNP G G T novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . RBMXL3 NM_001145346 exon1 c.G2234T p.G745V GAGGAGGTCGCTC . 75.0 64.0 133.0 0.0 . 83 . . Atlas-SNP ACVR2A 92 hgsc.bcm.edu hg19 2 148684720 148684736 + Frame_Shift_Del DEL ATGTGTAGGTGAAAGAA ATGTGTAGGTGAAAGAA - novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 ATGTGTAGGTGAAAGAA ATGTGTAGGTGAAAGAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ACVR2A NM_001616 exon11 c.1418_1434del p.473_478del . . 51.0 15.0 138.0 0.0 . 125 . . Atlas-Indel,Pindel ANKRD36B 57730 hgsc.bcm.edu hg19 2 98160311 98160311 + Frame_Shift_Del DEL C C - novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . . NM_025190 exon26 c.1726delA p.K576fs . . 44.0 11.0 78.0 0.0 . . . . Atlas-INDEL ITGB5 3693 hgsc.bcm.edu hg19 3 124483275 124483275 + Frame_Shift_Del DEL T T - novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ITGB5 NM_002213 exon14 c.2268delG p.K756fs . . 60.0 21.0 79.0 0.0 . 66 . . Atlas-Indel,Pindel DHX57 90957 hgsc.bcm.edu hg19 2 39046259 39046261 + In_Frame_Del DEL CTT CTT - novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 CTT CTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . DHX57 NM_198963 exon18 c.3318_3320del p.1106_1107del . . 137.0 52.0 191.0 0.0 . 127 . . Atlas-Indel,Pindel LRRC49 54839 hgsc.bcm.edu hg19 15 71305223 71305225 + In_Frame_Del DEL TCG TCG - novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 TCG TCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . LRRC49 NM_001199017 exon14 c.1688_1690del p.563_564del . . 63.0 29.0 88.0 0.0 . 73 . . Atlas-Indel,Pindel ANKRD18B 441459 hgsc.bcm.edu hg19 9 33524684 33524685 + Frame_Shift_Ins INS - - A novel TCGA-CC-A8HU-01A-11D-A35Z-10 TCGA-CC-A8HU-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5d7d4f-5e5c-46e5-b7de-7cc07db0791d bb86c7c8-28de-4fbb-830b-e0328aa71b1d . ANKRD18B NM_001244752 exon1 c.197_198insA p.R66fs . . 65.0 27.0 153.0 0.0 . 46 . . Pindel