Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CCNL2	81669	hgsc.bcm.edu	hg19	1	1322749	1322749	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CCNL2	NM_030937	exon11	c.G1425A	p.E475E	CGCCCGCTCCCGT	.	96.0	31.0	56.0	0.0	.	54	.	.	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	hg19	1	2535696	2535696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MMEL1	NM_033467	exon10	c.A841G	p.M281V	ACACCATGAACTG	.	126.0	82.0	67.0	0.0	.	64	.	.	Atlas-SNP
MTOR	2475	hgsc.bcm.edu	hg19	1	11204794	11204794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTOR	NM_004958	exon34	c.A4783G	p.M1595V	ACAGCATGTGGCA	.	42.0	28.0	28.0	0.0	.	327	.	.	Atlas-SNP
CELA3A	10136	hgsc.bcm.edu	hg19	1	22332241	22332241	+	Missense_Mutation	SNP	A	A	G	rs75527968		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELA3A	NM_005747	exon4	c.A314G	p.E105G	ACTCTGAGGAGCT	.	133.0	9.0	70.0	0.0	.	35	.	A|0.500;G|0.500	Atlas-SNP
CELA3A	10136	hgsc.bcm.edu	hg19	1	22332245	22332245	+	Missense_Mutation	SNP	G	G	C	rs74958230		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELA3A	NM_005747	exon4	c.G318C	p.E106D	TGAGGAGCTGTTT	.	140.0	10.0	69.0	0.0	.	35	.	G|0.500;C|0.500	Atlas-SNP
SLC22A15	55356	hgsc.bcm.edu	hg19	1	116563474	116563474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC22A15	NM_018420	exon4	c.A566G	p.E189G	TTAATGAATGTGT	.	366.0	151.0	136.0	0.0	.	65	.	.	Atlas-SNP
MUC1	4582	hgsc.bcm.edu	hg19	1	155160803	155160803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC1	NM_001204286	exon4	c.G751A	p.V251I	GAGGTACCGTGCT	.	509.0	90.0	143.0	0.0	.	94	.	.	Atlas-SNP
FAM189B	10712	hgsc.bcm.edu	hg19	1	155224577	155224577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM189B	NM_001267608	exon1	c.T92G	p.L31R	GCCTGCAGCCAGG	.	170.0	19.0	47.0	0.0	.	51	.	.	Atlas-SNP
OR6K6	128371	hgsc.bcm.edu	hg19	1	158725609	158725609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6K6	NM_001005184	exon1	c.A1004G	p.Q335R	ACTATCAGAAGAG	.	301.0	46.0	118.0	0.0	.	81	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179621325	179621325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TDRD5	NM_173533	exon13	c.G2153A	p.R718H	AGTTACGTATCTT	.	239.0	23.0	106.0	0.0	.	149	.	.	Atlas-SNP
DENND1B	163486	hgsc.bcm.edu	hg19	1	197704850	197704850	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DENND1B	NM_001195216	exon3	c.A159G	p.E53E	AAAGTTTTCCAGT	.	40.0	9.0	17.0	0.0	.	108	.	.	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	hg19	1	198721876	198721876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPRC	NM_002838	exon31	c.A3484G	p.S1162G	CACAAGAGTACAC	.	89.0	13.0	36.0	0.0	.	229	.	.	Atlas-SNP
OPTC	26254	hgsc.bcm.edu	hg19	1	203468895	203468895	+	Silent	SNP	G	G	T	rs114294638	bycluster;by1000genomes;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OPTC	NM_014359	exon5	c.G648T	p.L216L	AGCTCTGCCCGTG	.	188.0	114.0	74.0	0.0	.	50	.	G|0.998;A|0.002	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225147985	225147985	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH14	NM_144989	exon4	c.T348C	p.P116P	CAGGCCTGTGTCC	.	150.0	37.0	79.0	0.0	.	300	.	.	Atlas-SNP
EXO1	9156	hgsc.bcm.edu	hg19	1	242035389	242035389	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	EXO1,colon,carcinoma,0,1	EXO1	NM_006027	exon10	c.G1323A	p.K441K	GAAGAAGACCAAG	.	376.0	32.0	140.0	0.0	.	103	.	.	Atlas-SNP
UBXN2A	165324	hgsc.bcm.edu	hg19	2	24194229	24194229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBXN2A	NM_181713	exon3	c.A125T	p.E42V	TTTTTGAGGAAGC	.	106.0	64.0	69.0	0.0	.	20	.	.	Atlas-SNP
MTIF2	4528	hgsc.bcm.edu	hg19	2	55473534	55473534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTIF2	NM_002453	exon10	c.G1045A	p.A349T	GATCTGCTTTCAA	.	256.0	24.0	125.0	0.0	.	64	.	.	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	hg19	2	74641896	74641896	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C2orf81	NM_001145054	exon4	c.C1327T	p.L443L	GTGGCAGCTTTGA	.	102.0	19.0	48.0	0.0	.	23	.	.	Atlas-SNP
WDR33	55339	hgsc.bcm.edu	hg19	2	128474768	128474768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	WDR33,scalp,malignant_melanoma,0,1	WDR33	NM_018383	exon17	c.C2830A	p.P944T	GAGGGGGAATGCG	.	152.0	97.0	60.0	0.0	.	136	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179548789	179548789	+	Missense_Mutation	SNP	C	C	T	rs72650032	bycluster;by1000genomes;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon133	c.G32743A	p.A10915T	GGACAGCTCTCTT	.	181.0	115.0	91.0	0.0	.	18412	.	C|0.998;G|0.002	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179575865	179575865	+	Missense_Mutation	SNP	G	G	C	rs374930292	bycluster	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TTN	NM_001267550	exon97	c.C28098G	p.S9366R	TGCAAGGCTCCGG	.	77.0	13.0	70.0	0.0	.	18412	.	.	Atlas-SNP
RAPH1	65059	hgsc.bcm.edu	hg19	2	204326584	204326584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RAPH1	NM_203365	exon7	c.C953T	p.A318V	ACTTGTGCCTCTT	.	474.0	24.0	114.0	0.0	.	118	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228884727	228884727	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SPHKAP	NM_030623	exon7	c.T843A	p.I281I	TGTTTTAATCAAT	.	1095.0	145.0	187.0	0.0	.	750	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	hg19	3	4732940	4732940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ITPR1	NM_001099952	exon32	c.G3914A	p.R1305Q	ACGGTCGGAATGT	.	225.0	68.0	106.0	0.0	.	659	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38135225	38135225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DLEC1	NM_007337	exon12	c.C1886T	p.T629M	GGTCCACGGCTAG	.	189.0	54.0	68.0	0.0	.	278	.	.	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	hg19	3	111688738	111688738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PHLDB2	NM_001134439	exon16	c.A3517T	p.T1173S	AAGCGAACATTCT	.	123.0	39.0	72.0	0.0	.	449	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112969411	112969411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	BOC	NM_033254	exon4	c.C107T	p.P36L	AGGTCCCTCAGGT	.	94.0	7.0	47.0	0.0	.	139	.	.	Atlas-SNP
POLQ	10721	hgsc.bcm.edu	hg19	3	121207657	121207657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	POLQ	NM_199420	exon16	c.C4121T	p.P1374L	GGAAAAGGAATGT	.	405.0	46.0	144.0	0.0	.	273	.	.	Atlas-SNP
TMCC1	23023	hgsc.bcm.edu	hg19	3	129389440	129389440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMCC1	NM_001017395	exon4	c.C1244A	p.P415Q	TATTTTGGGCTAG	.	269.0	32.0	119.0	0.0	.	105	.	.	Atlas-SNP
CLSTN2	64084	hgsc.bcm.edu	hg19	3	140140017	140140017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CLSTN2	NM_022131	exon5	c.G688C	p.E230Q	CAGTATGAGATCC	.	87.0	8.0	47.0	0.0	.	190	.	.	Atlas-SNP
ATR	545	hgsc.bcm.edu	hg19	3	142215986	142215986	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATR	NM_001184	exon33	c.G5607A	p.Q1869Q	AGAATGCTGGAAA	.	96.0	42.0	43.0	0.0	.	285	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	150873991	150873991	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MED12L	NM_053002	exon5	c.C600T	p.A200A	GTTGGCCAAGATT	.	87.0	27.0	41.0	0.0	.	271	.	.	Atlas-SNP
EHHADH	1962	hgsc.bcm.edu	hg19	3	184910999	184910999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	EHHADH	NM_001966	exon7	c.T1187G	p.L396R	GCTGAGAGTTCAG	.	169.0	64.0	98.0	0.0	.	73	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195515393	195515393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC4	NM_018406	exon2	c.G3058A	p.G1020S	TGTGACCTGTGGA	.	243.0	15.0	78.0	0.0	.	1505	.	.	Atlas-SNP
LYAR	55646	hgsc.bcm.edu	hg19	4	4275388	4275388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LYAR	NM_017816	exon8	c.G841A	p.D281N	TAGAATCTGTTTC	.	149.0	40.0	76.0	0.0	.	36	.	.	Atlas-SNP
STK32B	55351	hgsc.bcm.edu	hg19	4	5170120	5170120	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STK32B	NM_018401	exon3	c.T203A	p.V68D	GGAATGTTTTCCG	.	176.0	34.0	56.0	0.0	.	87	.	.	Atlas-SNP
PROM1	8842	hgsc.bcm.edu	hg19	4	16035130	16035130	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PROM1	NM_006017	exon4	c.T306C	p.I102I	GTAGACAATCTGC	.	172.0	46.0	75.0	0.0	.	91	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79428611	79428611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FRAS1	NM_025074	exon62	c.C9353T	p.S3118F	TCCTGTCCAATGA	.	179.0	51.0	99.0	0.0	.	779	.	.	Atlas-SNP
ABCG2	9429	hgsc.bcm.edu	hg19	4	89039357	89039357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ABCG2	NM_004827	exon7	c.A745G	p.I249V	TGAAGATGGAATA	.	109.0	34.0	80.0	0.0	.	151	.	.	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144467138	144467138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMARCA5	NM_003601	exon19	c.A2458G	p.I820V	CTTAAAATTGATG	.	243.0	84.0	102.0	0.0	.	73	.	.	Atlas-SNP
ZNF827	152485	hgsc.bcm.edu	hg19	4	146686272	146686272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF827	NM_178835	exon13	c.T3098A	p.M1033K	TCAAACATGTTCT	.	104.0	20.0	62.0	0.0	.	102	.	.	Atlas-SNP
DCHS2	54798	hgsc.bcm.edu	hg19	4	155278437	155278437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DCHS2	NM_017639	exon6	c.A734G	p.N245S	GAAAAGTTGACAG	.	60.0	19.0	46.0	0.0	.	594	.	.	Atlas-SNP
PLEKHG4B	153478	hgsc.bcm.edu	hg19	5	181677	181677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHG4B	NM_052909	exon17	c.T3383C	p.F1128S	AGCCATTCATGGA	.	99.0	25.0	49.0	0.0	.	167	.	.	Atlas-SNP
DDX4	54514	hgsc.bcm.edu	hg19	5	55083699	55083699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DDX4	NM_024415	exon15	c.C1043T	p.A348V	TTTTGGCTCATAT	.	128.0	30.0	81.0	0.0	.	194	.	.	Atlas-SNP
SRFBP1	153443	hgsc.bcm.edu	hg19	5	121358098	121358098	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SRFBP1	NM_152546	exon7	c.C1101G	p.S367S	AAGATCCCTAGGT	.	110.0	35.0	93.0	0.0	.	47	.	.	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	hg19	5	140188279	140188279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHA4	NM_031500	exon1	c.G1507A	p.A503T	GAGCGCGCGCTGT	.	112.0	36.0	40.0	0.0	.	419	.	.	Atlas-SNP
PCDHGA3	56112	hgsc.bcm.edu	hg19	5	140723657	140723657	+	Silent	SNP	C	C	T	rs200693710	by1000genomes;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PCDHGA3	NM_032011	exon1	c.C57T	p.L19L	CGCGCTCCTGGGG	.	61.0	17.0	47.0	0.0	.	246	.	C|1.000;G|0.000	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150922777	150922777	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAT2	NM_001447	exon9	c.C7911T	p.N2637N	GACTGGGTTAATT	.	53.0	18.0	49.0	0.0	.	465	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169484584	169484584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DOCK2	NM_004946	exon44	c.T4381C	p.S1461P	GGACAGTCCATGT	.	101.0	17.0	70.0	0.0	.	389	.	.	Atlas-SNP
HNRNPH1	3187	hgsc.bcm.edu	hg19	5	179043886	179043886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HNRNPH1	NM_001257293	exon11	c.G1191A	p.M397I	GCCTCCCATCATT	.	290.0	12.0	134.0	0.0	.	62	.	.	Atlas-SNP
HIST1H3I	8354	hgsc.bcm.edu	hg19	6	27839822	27839822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HIST1H3I	NM_003533	exon1	c.T272C	p.M91T	AGCGCCATCACCG	.	180.0	85.0	65.0	0.0	.	28	.	.	Atlas-SNP
OR2B6	26212	hgsc.bcm.edu	hg19	6	27925139	27925139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR2B6	NM_012367	exon1	c.G121A	p.G41S	ATCTTTGGCAATC	.	385.0	16.0	147.0	0.0	.	48	.	.	Atlas-SNP
PPT2	9374	hgsc.bcm.edu	hg19	6	32123651	32123651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PPT2	NM_138717	exon5	c.C455T	p.T152M	CAGACACGGACTA	.	351.0	73.0	95.0	0.0	.	19	.	.	Atlas-SNP
BZW2	28969	hgsc.bcm.edu	hg19	7	16720997	16720997	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	BZW2,NS,carcinoma,0,1	BZW2	NM_014038	exon4	c.G307T	p.E103X	GCAAATGAAGATC	.	107.0	19.0	57.0	0.0	.	35	.	.	Atlas-SNP
CBX3	11335	hgsc.bcm.edu	hg19	7	26248077	26248077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CBX3	NM_016587	exon4	c.A232G	p.N78D	TTTCTTAACTCTC	.	248.0	102.0	116.0	0.0	.	25	.	.	Atlas-SNP
NYAP1	222950	hgsc.bcm.edu	hg19	7	100085893	100085893	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_173564	exon4	c.C549T	p.G183G	CCCAGGCCCCTCT	.	67.0	23.0	50.0	0.0	.	.	.	.	Atlas-SNP
SLC12A9	56996	hgsc.bcm.edu	hg19	7	100452001	100452001	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC12A9	NM_020246	exon2	c.181+1G>T	.	GGATTGGTGAGTG	.	499.0	133.0	158.0	0.0	.	81	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100678400	100678400	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MUC17	NM_001040105	exon3	c.G3703T	p.E1235X	AGTTCTGAGGCTA	.	102.0	21.0	67.0	0.0	.	804	.	.	Atlas-SNP
GPR22	2845	hgsc.bcm.edu	hg19	7	107115448	107115448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR22	NM_005295	exon3	c.T943C	p.S315P	AGGATGTCTTTAT	.	330.0	109.0	153.0	0.0	.	43	.	.	Atlas-SNP
SGCZ	137868	hgsc.bcm.edu	hg19	8	13948074	13948074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SGCZ	NM_139167	exon8	c.T817A	p.S273T	TTGAGGAGCTGGG	.	60.0	26.0	52.0	0.0	.	96	.	.	Atlas-SNP
UBR5	51366	hgsc.bcm.edu	hg19	8	103293516	103293516	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	UBR5	NM_015902	exon42	c.5927+1G>A	.	TGGATACCTTTTG	.	727.0	219.0	146.0	0.0	.	285	.	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	hg19	8	106331179	106331179	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	ZFPM2,colon,carcinoma,0,1	ZFPM2	NM_012082	exon1	c.C10T	p.R4X	TCCCGGCGAAAGC	.	205.0	30.0	37.0	0.0	.	219	.	.	Atlas-SNP
ANGPT1	284	hgsc.bcm.edu	hg19	8	108297062	108297062	+	Silent	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANGPT1	NM_001146	exon7	c.C1053A	p.P351P	ACCGGAGGGATTT	.	278.0	40.0	76.0	0.0	.	111	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131797673	131797673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ADCY8	NM_001115	exon16	c.G3109A	p.G1037S	TGCTGCCAATGGT	.	109.0	9.0	51.0	0.0	.	291	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133961019	133961019	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TG	NM_003235	exon27	c.5234-2A>G	.	ATTCTCAGGTGCC	.	266.0	63.0	90.0	0.0	.	416	.	.	Atlas-SNP
DMRT2	10655	hgsc.bcm.edu	hg19	9	1056606	1056606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DMRT2	NM_181872	exon4	c.G1019T	p.R340I	CCTCAAGATTTTT	.	89.0	22.0	66.0	0.0	.	70	.	.	Atlas-SNP
IFNA4	3441	hgsc.bcm.edu	hg19	9	21187344	21187344	+	Missense_Mutation	SNP	C	C	G	rs3203576		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IFNA4	NM_021068	exon1	c.G187C	p.E63Q	CCTCCTCGGGGAA	.	326.0	103.0	135.0	0.0	.	34	.	.	Atlas-SNP
SPATA31C2	645961	hgsc.bcm.edu	hg19	9	90746873	90746873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001166137	exon4	c.C1079T	p.S360F	GGGAAAGAGGATT	.	139.0	37.0	81.0	0.0	.	.	.	.	Atlas-SNP
ZNF189	7743	hgsc.bcm.edu	hg19	9	104171115	104171115	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF189	NM_003452	exon3	c.G1065A	p.R355R	CAGTCGGAGCTCA	.	81.0	19.0	52.0	0.0	.	79	.	.	Atlas-SNP
CYLC2	1539	hgsc.bcm.edu	hg19	9	105767037	105767037	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CYLC2	NM_001340	exon4	c.T241C	p.L81L	CGTTCTTTAATGA	.	128.0	35.0	76.0	0.0	.	109	.	.	Atlas-SNP
OR13C9	286362	hgsc.bcm.edu	hg19	9	107379994	107379994	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR13C9	NM_001001956	exon1	c.A492G	p.V164V	CAATTGTACTACA	.	206.0	67.0	105.0	0.0	.	42	.	.	Atlas-SNP
SUSD1	64420	hgsc.bcm.edu	hg19	9	114820918	114820918	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SUSD1	NM_022486	exon14	c.T1899A	p.S633S	ATCACAAGAAAAT	.	97.0	28.0	55.0	0.0	.	51	.	.	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	436697	436697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DIP2C	NM_014974	exon11	c.A1367T	p.E456V	GGGATCTCTCCCG	.	94.0	23.0	54.0	0.0	.	195	.	.	Atlas-SNP
PFKFB3	5209	hgsc.bcm.edu	hg19	10	6258734	6258734	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PFKFB3	NM_004566	exon5	c.T432C	p.N144N	AGAAAATGACTTT	.	83.0	30.0	59.0	0.0	.	82	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17130262	17130262	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CUBN	NM_001081	exon15	c.T1848C	p.C616C	CCAGACACAATCT	.	140.0	28.0	52.0	0.0	.	515	.	.	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48388579	48388579	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RBP3	NM_002900	exon1	c.C2299T	p.L767L	ATACCAGCCGCAC	.	90.0	38.0	24.0	0.0	.	152	.	.	Atlas-SNP
ZWINT	11130	hgsc.bcm.edu	hg19	10	58118598	58118598	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZWINT	NM_007057	exon6	c.G591A	p.Q197Q	TGCCTGCTGCTTC	.	272.0	49.0	120.0	0.0	.	39	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64950774	64950774	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon17	c.C6171T	p.S2057S	ATTCTGGGACACA	.	529.0	161.0	151.0	0.0	.	347	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64966479	64966479	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	JMJD1C	NM_032776	exon10	c.C4950G	p.Y1650X	CTTTTTGTAAGTT	.	525.0	161.0	174.0	0.0	.	347	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91474892	91474892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIF20B	NM_016195	exon8	c.A893G	p.K298R	AGAGAAAGATGCT	.	174.0	64.0	107.0	0.0	.	191	.	.	Atlas-SNP
IDE	3416	hgsc.bcm.edu	hg19	10	94223595	94223595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	IDE	NM_004969	exon21	c.A2654T	p.H885L	TGAATGTGTTTTT	.	521.0	78.0	163.0	0.0	.	77	.	.	Atlas-SNP
MYOF	26509	hgsc.bcm.edu	hg19	10	95123767	95123767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYOF	NM_013451	exon27	c.G2819A	p.R940H	GGGTAGCGGCTCT	.	48.0	19.0	25.0	0.0	.	177	.	.	Atlas-SNP
DENND5A	23258	hgsc.bcm.edu	hg19	11	9202573	9202573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DENND5A	NM_015213	exon6	c.C1196A	p.P399Q	AACTGTGGCAAGT	.	161.0	35.0	82.0	0.0	.	84	.	.	Atlas-SNP
CPT1A	1374	hgsc.bcm.edu	hg19	11	68530229	68530229	+	Missense_Mutation	SNP	C	C	A	rs201706909	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CPT1A	NM_001876	exon15	c.G1741T	p.D581Y	CCATGTCCTGGGG	.	39.0	24.0	20.0	0.0	.	89	.	C|0.999;T|0.001	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100792230	100792230	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ARHGAP42	NM_152432	exon6	c.T492C	p.D164D	GGCAGATACACAA	.	130.0	45.0	76.0	0.0	.	32	.	.	Atlas-SNP
FDXACB1	91893	hgsc.bcm.edu	hg19	11	111746109	111746109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FDXACB1	NM_138378	exon5	c.T1412C	p.I471T	GATGTGATAACAG	.	85.0	48.0	69.0	0.0	.	74	.	.	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	hg19	11	123676275	123676275	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	OR6M1,NS,carcinoma,0,1	OR6M1	NM_001005325	exon1	c.G783A	p.Q261Q	GGAGTTCTGATTG	.	161.0	81.0	84.0	0.0	.	60	.	.	Atlas-SNP
PKNOX2	63876	hgsc.bcm.edu	hg19	11	125237764	125237764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PKNOX2	NM_022062	exon5	c.C110T	p.P37L	AGCCACCCTCCAA	.	93.0	20.0	59.0	0.0	.	60	.	.	Atlas-SNP
ANO2	57101	hgsc.bcm.edu	hg19	12	5936960	5936960	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO2	NM_020373	exon7	c.C855T	p.A285A	GGAGCAGGCTGTG	.	80.0	31.0	33.0	0.0	.	309	.	.	Atlas-SNP
OR6C74	254783	hgsc.bcm.edu	hg19	12	55641327	55641327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	OR6C74	NM_001005490	exon1	c.G256A	p.G86S	GCAACAGGTGATA	.	260.0	70.0	108.0	0.0	.	52	.	.	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101365128	101365128	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANO4	NM_178826	exon5	c.C396T	p.A132A	GCATGCCCCATGG	.	152.0	30.0	80.0	0.0	.	183	.	.	Atlas-SNP
C12orf42	374470	hgsc.bcm.edu	hg19	12	103696092	103696092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	C12orf42	NM_001099336	exon6	c.C877T	p.R293W	TGTCCCGCGGGGT	.	75.0	10.0	45.0	0.0	.	50	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117710212	117710212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NOS1	NM_000620	exon10	c.A1817G	p.N606S	CGGGAGTTGTCAC	.	96.0	8.0	51.0	0.0	.	240	.	.	Atlas-SNP
MTMR6	9107	hgsc.bcm.edu	hg19	13	25823570	25823570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MTMR6	NM_004685	exon14	c.T1666G	p.S556A	GAACTGAATGTAA	.	237.0	58.0	141.0	0.0	.	75	.	.	Atlas-SNP
FAM194B	220081	hgsc.bcm.edu	hg19	13	46135603	46135603	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM194B	NM_182542	exon11	c.T1308C	p.P436P	CTTCTCAGGTGTT	.	382.0	35.0	149.0	0.0	.	42	.	.	Atlas-SNP
SLC15A1	6564	hgsc.bcm.edu	hg19	13	99371494	99371494	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC15A1	NM_005073	exon8	c.C637T	p.L213L	TACTCAGGGCTAC	.	53.0	18.0	25.0	0.0	.	92	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72054832	72054832	+	Silent	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SIPA1L1	NM_015556	exon2	c.A243T	p.A81A	GATTGCAGATTGG	.	103.0	46.0	63.0	0.0	.	219	.	.	Atlas-SNP
ATG2B	55102	hgsc.bcm.edu	hg19	14	96809512	96809512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ATG2B	NM_018036	exon5	c.T688A	p.W230R	CATCCCAGAAGAG	.	192.0	14.0	106.0	0.0	.	169	.	.	Atlas-SNP
BLOC1S6	26258	hgsc.bcm.edu	hg19	15	45884374	45884374	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_012388	exon2	c.T124A	p.L42M	GAGGACTTGACTA	.	73.0	25.0	53.0	0.0	.	.	.	.	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	hg19	15	56387953	56387953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RFX7	NM_022841	exon9	c.A1973G	p.K658R	AGTCGTTTTCTTG	.	151.0	55.0	87.0	0.0	.	170	.	.	Atlas-SNP
ANP32A	8125	hgsc.bcm.edu	hg19	15	69076893	69076893	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ANP32A	NM_006305	exon4	c.C369T	p.C123C	TACCTCGCAATTG	.	255.0	60.0	120.0	0.0	.	15	.	.	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	hg19	15	77227917	77227917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	RCN2	NM_002902	exon3	c.G301A	p.E101K	ATGCAAGAAGCAA	.	74.0	20.0	53.0	0.0	.	16	.	.	Atlas-SNP
FAM169B	283777	hgsc.bcm.edu	hg19	15	99023985	99023985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FAM169B	NM_182562	exon4	c.G28C	p.V10L	GCACAACCCTTTC	.	105.0	29.0	63.0	0.0	.	23	.	.	Atlas-SNP
KIAA0556	23247	hgsc.bcm.edu	hg19	16	27761333	27761333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	KIAA0556	NM_015202	exon16	c.A3052G	p.I1018V	CCCGATATCAATA	.	83.0	14.0	54.0	0.0	.	348	.	.	Atlas-SNP
FUS	2521	hgsc.bcm.edu	hg19	16	31201608	31201608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FUS	NM_004960	exon12	c.G1181T	p.R394L	TGGGCCGTGGAGG	.	168.0	29.0	84.0	0.0	.	52	.	.	Atlas-SNP
FTO	79068	hgsc.bcm.edu	hg19	16	53878098	53878098	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	FTO	NM_001080432	exon4	c.T783A	p.H261Q	CTCTCATCTCGAA	.	203.0	34.0	107.0	0.0	.	51	.	.	Atlas-SNP
CES3	23491	hgsc.bcm.edu	hg19	16	67006590	67006590	+	Silent	SNP	G	G	A	rs377447761		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CES3	NM_024922	exon12	c.G1461A	p.E487E	CACAGAGGAGGAG	.	66.0	17.0	43.0	0.0	.	56	.	.	Atlas-SNP
CLUH	23277	hgsc.bcm.edu	hg19	17	2604781	2604781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_015229	exon6	c.G664A	p.G222R	TCCATCCGCTCAT	.	53.0	18.0	23.0	0.0	.	.	.	.	Atlas-SNP
TMEM102	284114	hgsc.bcm.edu	hg19	17	7339378	7339378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TMEM102	NM_178518	exon2	c.C188T	p.A63V	TCCGGGCCAAGGA	.	132.0	46.0	46.0	0.0	.	11	.	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	hg19	17	10404577	10404577	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MYH1	NM_005963	exon27	c.G3588A	p.L1196L	CTTCCTCAGGGTG	.	183.0	51.0	103.0	0.0	.	403	.	.	Atlas-SNP
DNAH9	1770	hgsc.bcm.edu	hg19	17	11786904	11786904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DNAH9	NM_001372	exon56	c.C10808A	p.S3603Y	TGCAGTCCGATCT	.	73.0	15.0	52.0	0.0	.	695	.	.	Atlas-SNP
ARHGAP44	9912	hgsc.bcm.edu	hg19	17	12819314	12819314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ARHGAP44	NM_014859	exon5	c.T373A	p.F125I	CCCCTGTTTTTGC	.	99.0	29.0	61.0	0.0	.	55	.	.	Atlas-SNP
PTRF	284119	hgsc.bcm.edu	hg19	17	40574856	40574856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTRF	NM_012232	exon1	c.A260T	p.Q87L	ATGCTCTGCACTG	.	98.0	24.0	44.0	0.0	.	48	.	.	Atlas-SNP
GPATCH8	23131	hgsc.bcm.edu	hg19	17	42475346	42475346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPATCH8	NM_001002909	exon8	c.G4099A	p.A1367T	CAGAGGCTGTAGC	.	206.0	12.0	80.0	0.0	.	114	.	.	Atlas-SNP
PLEKHM1	9842	hgsc.bcm.edu	hg19	17	43552916	43552916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PLEKHM1	NM_014798	exon4	c.C473A	p.A158D	TCCTCAGCATCCC	.	114.0	8.0	71.0	0.0	.	69	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2795979	2795979	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMCHD1	NM_015295	exon46	c.A5752T	p.K1918X	GTGTGCAAACTAG	.	281.0	80.0	130.0	0.0	.	88	.	.	Atlas-SNP
LPIN2	9663	hgsc.bcm.edu	hg19	18	2925247	2925247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LPIN2	NM_014646	exon14	c.C1913G	p.S638C	CGGAGAGACTTCT	.	186.0	53.0	88.0	0.0	.	75	.	.	Atlas-SNP
ZNF519	162655	hgsc.bcm.edu	hg19	18	14105690	14105690	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF519	NM_145287	exon3	c.G849A	p.Q283Q	AATTTTCTGATGT	.	42.0	7.0	52.0	0.0	.	53	.	.	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	hg19	18	28956907	28956907	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	DSG4	NM_001134453	exon1	c.T33C	p.L11L	TTGCCTTTTGATC	.	142.0	53.0	84.0	0.0	.	343	.	.	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	hg19	18	31314285	31314285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL3	NM_030632	exon10	c.C988T	p.P330S	TTTACCCCAGAAA	.	211.0	56.0	126.0	0.0	.	405	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65180960	65180960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	DSEL,NS,carcinoma,+1,1	DSEL	NM_032160	exon2	c.C916T	p.R306C	AATGGCGCTGGGC	.	103.0	36.0	71.0	0.0	.	196	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4408946	4408946	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CHAF1A	NM_005483	exon3	c.C150T	p.A50A	GAAAGCCGATGAC	.	129.0	16.0	58.0	0.0	.	69	.	.	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11141502	11141502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SMARCA4	NM_003072	exon25	c.G3479A	p.G1160E	CTGGGGGGCTCGG	.	54.0	31.0	28.0	0.0	.	502	.	.	Atlas-SNP
SLC1A6	6511	hgsc.bcm.edu	hg19	19	15063807	15063807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	SLC1A6	NM_005071	exon8	c.A1432G	p.I478V	GCACAATGACCAT	.	217.0	42.0	55.0	0.0	.	111	.	.	Atlas-SNP
ZNF100	163227	hgsc.bcm.edu	hg19	19	21910792	21910792	+	Splice_Site	SNP	C	C	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF100	NM_173531	exon6	c.323-1G>C	.	ATATAACTGAAAG	.	77.0	8.0	55.0	0.0	.	62	.	.	Atlas-SNP
ZNF728	388523	hgsc.bcm.edu	hg19	19	23159320	23159320	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001267716	exon4	c.A819G	p.E273E	CTTATGTTCAATA	.	32.0	18.0	23.0	0.0	.	.	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23926971	23926971	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF681	NM_138286	exon4	c.C1381G	p.Q461E	AGAACTGGTTAAA	.	69.0	10.0	35.0	0.0	.	76	.	.	Atlas-SNP
ZNF681	148213	hgsc.bcm.edu	hg19	19	23927977	23927977	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF681	NM_138286	exon4	c.A375T	p.G125G	ATAACCTCCTTTT	.	118.0	48.0	74.0	0.0	.	76	.	.	Atlas-SNP
PSG1	5669	hgsc.bcm.edu	hg19	19	43382236	43382236	+	Missense_Mutation	SNP	C	C	G	rs1058661	bycluster	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PSG1	NM_001184826	exon2	c.G259C	p.E87Q	TTATTTCACCGTC	.	189.0	36.0	99.0	0.0	.	196	.	C|1.000;|0.000	Atlas-SNP
ZNF284	342909	hgsc.bcm.edu	hg19	19	44590091	44590091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF284	NM_001037813	exon5	c.A460C	p.K154Q	TGTAAAAAATTCT	.	95.0	9.0	63.0	0.0	.	38	.	.	Atlas-SNP
ZNF285	26974	hgsc.bcm.edu	hg19	19	44890916	44890916	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ZNF285	NM_152354	exon4	c.A1491G	p.S497S	AAAATATGAACTG	.	215.0	116.0	105.0	0.0	.	86	.	.	Atlas-SNP
PGLYRP1	8993	hgsc.bcm.edu	hg19	19	46525997	46525997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PGLYRP1	NM_005091	exon1	c.T283A	p.Y95N	ACTTGTAGCCCAC	.	278.0	20.0	85.0	0.0	.	21	.	.	Atlas-SNP
HRC	3270	hgsc.bcm.edu	hg19	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HRC	NM_002152	exon1	c.A579G	p.E193E	CTCCTCTTCTCCT	.	201.0	18.0	96.0	0.0	.	85	.	.	Atlas-SNP
LILRA1	11024	hgsc.bcm.edu	hg19	19	55106781	55106781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	LILRA1,NS,carcinoma,0,2	LILRA1	NM_006863	exon5	c.G575A	p.R192K	GTCGCAGGTGGTC	.	376.0	65.0	120.0	0.0	.	105	.	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	hg19	20	31016044	31016044	+	Silent	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	ASXL1	NM_015338	exon4	c.A366G	p.E122E	TGGTGAAAACGAT	.	142.0	17.0	73.0	0.0	.	1114	.	.	Atlas-SNP
ATP9A	10079	hgsc.bcm.edu	hg19	20	50287725	50287725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.,1	ATP9A	NM_006045	exon12	c.G1109A	p.G370E	ACGGTCCCGGGGA	.	107.0	30.0	47.0	0.0	.	135	.	.	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	hg19	21	10921977	10921977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	TPTE	NM_199261	exon18	c.T1046C	p.V349A	GCACAAACCATAG	.	321.0	14.0	149.0	0.0	.	513	.	.	Atlas-SNP
TENM1	10178	hgsc.bcm.edu	hg19	X	123517526	123517526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	NM_001163278	exon30	c.T7255A	p.Y2419N	CTGGGTAGTTATT	.	133.0	28.0	97.0	0.0	.	.	.	.	Atlas-SNP
GPR112	139378	hgsc.bcm.edu	hg19	X	135453612	135453612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	GPR112	NM_153834	exon14	c.A7522G	p.M2508V	ATAAGTATGAACC	.	191.0	86.0	138.0	0.0	.	459	.	.	Atlas-SNP
HCFC1	3054	hgsc.bcm.edu	hg19	X	153222832	153222832	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	HCFC1	NM_005334	exon13	c.G2286A	p.K762K	GCCGGGCTTGGTG	.	212.0	89.0	111.0	0.0	.	284	.	.	Atlas-SNP
ATP6	0	hgsc.bcm.edu	hg19	MT	8865	8865	+	Silent	SNP	G	G	A	rs112375677	alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	.	ENST00000361899	exon1	c.G339A	p.V113V	CACAGTGATTATA	.	45.0	39.0	4.0	0.0	.	.	.	.	Atlas-SNP
STRAP	11171	hgsc.bcm.edu	hg19	12	16035698	16035698	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	STRAP	NM_007178	exon1	c.56delA	p.D19fs	.	.	69.0	28.0	33.0	0.0	.	33	.	.	Atlas-Indel,Pindel
MARS	4141	hgsc.bcm.edu	hg19	12	57910075	57910076	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	MARS	NM_004990	exon20	c.2511_2512insA	p.A837fs	.	.	275.0	20.0	57.0	0.0	.	84	.	.	Atlas-INDEL
PTPN9	5780	hgsc.bcm.edu	hg19	15	75762179	75762180	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	PTPN9	NM_002833	exon12	c.1521_1522del	p.507_508del	.	.	123.0	37.0	62.0	0.0	.	53	.	.	Atlas-Indel,Pindel
LIPI	149998	hgsc.bcm.edu	hg19	21	15579205	15579206	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	LIPI	NM_198996	exon1	c.40_41insA	p.Y14fs	.	.	72.0	10.0	60.0	0.0	.	95	.	.	Atlas-INDEL
BAP1	8314	hgsc.bcm.edu	hg19	3	52440270	52440276	+	Frame_Shift_Del	DEL	TGCTGCA	TGCTGCA	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	TGCTGCA	TGCTGCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	BAP1,NS,carcinoma,-2,1	BAP1	NM_004656	exon9	c.777_783del	p.259_261del	.	.	48.0	14.0	60.0	0.0	.	371	.	.	Atlas-INDEL
ASAP2	8853	hgsc.bcm.edu	hg19	2	9528642	9528643	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.,2	ASAP2	NM_001135191	exon22	c.2350_2351insC	p.A784fs	.	.	70.0	11.0	33.0	0.0	.	91	.	.	Atlas-INDEL
COL6A2	1292	hgsc.bcm.edu	hg19	21	47531490	47531492	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	COL6A2	NM_058175	exon2	c.99_101del	p.33_34del	.	.	112.0	22.0	52.0	0.0	.	351	.	.	Atlas-Indel,Pindel
CELA1	1990	hgsc.bcm.edu	hg19	12	51740405	51740433	+	In_Frame_Del	DEL	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	-	rs372974824	byfrequency;alternate_allele	TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CTGGACCATATCCACTTACCATAAAGGAC	CTGGACCATATCCACTTACCATAAAGGAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	CELA1	NM_001971	exon1	c.8_16del	p.3_6del	.	.	25.0	25.0	0.0	0.0	.	39	.	-|0.574;CACCAGGAAGCG|0.426	Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-DD-A1EF-01A-11D-A12Z-10	TCGA-DD-A1EF-10A-01D-A12Z-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	93e828cc-f42a-438f-a94b-9c2208e1988e	a3a82e8b-83d5-4f74-8f92-4ccb2b2ee0e4	.	NCAM1	NM_001242607	wholegene	.	.	.	.	18.0	18.0	0.0	0.0	.	372	.	.	Pindel