Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
WASF2	10163	hgsc.bcm.edu	hg19	1	27739169	27739169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	WASF2	NM_006990	exon7	c.G721A	p.V241M	CATCCACGTTTTC	.	228.0	88.0	49.0	0.0	.	41	.	.	Atlas-SNP
PDE4B	5142	hgsc.bcm.edu	hg19	1	66723358	66723358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PDE4B	NM_001037341	exon5	c.T505G	p.F169V	ACTCCTTTTGCCC	.	252.0	164.0	50.0	0.0	.	231	.	.	Atlas-SNP
ZNF326	284695	hgsc.bcm.edu	hg19	1	90487903	90487903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ZNF326	NM_182976	exon11	c.A1400C	p.K467T	TTGTTAAGGTAAG	.	395.0	76.0	72.0	0.0	.	60	.	.	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	hg19	1	211093326	211093326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCNH1	NM_172362	exon7	c.A1118G	p.E373G	CCATATTCAATGT	.	156.0	33.0	481.0	1.0	.	199	.	.	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	hg19	1	231830097	231830097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DISC1	NM_001164541	exon2	c.C593A	p.T198N	CCCCAACCCCTCC	.	114.0	21.0	450.0	0.0	.	207	.	.	Atlas-SNP
CGREF1	10669	hgsc.bcm.edu	hg19	2	27325451	27325451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CGREF1	NM_001166239	exon3	c.C89A	p.S30Y	ACTTCAGAGTCTG	.	48.0	10.0	140.0	0.0	.	31	.	.	Atlas-SNP
SIX2	10736	hgsc.bcm.edu	hg19	2	45233509	45233509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SIX2	NM_016932	exon2	c.T676A	p.S226T	TGGATGATGAGTG	.	16.0	12.0	114.0	0.0	.	39	.	.	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48809395	48809395	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	STON1	NM_001198595	exon3	c.G1623A	p.V541V	ATACGTGGAACTT	.	285.0	43.0	56.0	0.0	.	100	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179559565	179559565	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TTN	NM_001267550	exon116	c.G31339C	p.V10447L	TGGTGACTTGAAC	.	339.0	126.0	53.0	0.0	.	18412	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	CTNNB1,colon,carcinoma,-1,11	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	175.0	89.0	15.0	0.0	.	4904	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53707151	53707151	+	Silent	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CACNA1D	NM_001128840	exon8	c.C1218T	p.S406S	ATTGAGCGGGTAA	.	978.0	485.0	135.0	0.0	.	324	.	.	Atlas-SNP
DENND6A	201627	hgsc.bcm.edu	hg19	3	57646514	57646514	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_152678	exon7	c.C672T	p.H224H	TGGCAGGTGTAAT	.	400.0	170.0	103.0	0.0	.	.	.	.	Atlas-SNP
CADM2	253559	hgsc.bcm.edu	hg19	3	86114753	86114753	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CADM2	NM_001167674	exon9	c.1064-2A>G	.	TTTTCCAGATCCT	.	249.0	110.0	46.0	0.0	.	195	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124165646	124165646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KALRN	NM_003947	exon21	c.C3460G	p.L1154V	TTTTACCTCTCAA	.	77.0	29.0	13.0	0.0	.	556	.	.	Atlas-SNP
RAB7A	7879	hgsc.bcm.edu	hg19	3	128516808	128516808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RAB7A	NM_004637	exon3	c.A76G	p.N26D	CTCATGAACCAGT	.	205.0	33.0	29.0	0.0	.	17	.	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	hg19	3	148559613	148559613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CPB1	NM_001871	exon6	c.G478A	p.G160S	TAGGTTGGCAAAG	.	212.0	93.0	35.0	0.0	.	74	.	.	Atlas-SNP
TP63	8626	hgsc.bcm.edu	hg19	3	189349323	189349323	+	Missense_Mutation	SNP	C	C	T	rs376627647		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TP63	NM_001114979	exon1	c.C19T	p.R7W	ACTTCACGGTGTG	.	112.0	9.0	17.0	0.0	.	187	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193061790	193061790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ATP13A5	NM_198505	exon9	c.C869T	p.P290L	TTTCCTGGAAGAA	.	209.0	96.0	41.0	0.0	.	171	.	.	Atlas-SNP
PPP2R2C	5522	hgsc.bcm.edu	hg19	4	6335429	6335429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	PPP2R2C,colon,carcinoma,+1,1	PPP2R2C	NM_181876	exon7	c.C820T	p.R274C	ATGAGCGGTTACT	.	103.0	26.0	434.0	1.0	.	63	.	.	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137902698	137902698	+	Missense_Mutation	SNP	T	T	G	rs199831172	bycluster	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HSPA9	NM_004134	exon8	c.A871C	p.K291Q	CTCTCTTGAACTC	.	305.0	22.0	40.0	0.0	.	49	.	T|0.999;G|0.001	Atlas-SNP
HSPA9	3313	hgsc.bcm.edu	hg19	5	137902699	137902699	+	Missense_Mutation	SNP	G	G	T	rs202180095		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HSPA9	NM_004134	exon8	c.C870A	p.F290L	TCTCTTGAACTCC	.	308.0	22.0	41.0	0.0	.	49	.	G|0.999;T|0.001	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	hg19	6	36447368	36447368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KCTD20	NM_173562	exon5	c.G538T	p.D180Y	TTACAGGATTATT	.	41.0	11.0	11.0	0.0	.	37	.	.	Atlas-SNP
LAMA2	3908	hgsc.bcm.edu	hg19	6	129637033	129637033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LAMA2	NM_000426	exon26	c.G3862A	p.V1288I	ATTATCGTCAGGC	.	52.0	11.0	12.0	0.0	.	481	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48318518	48318518	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	ABCA13	NM_152701	exon18	c.T7727A	p.L2576X	CTACTTTAAAAAA	.	167.0	17.0	18.0	0.0	.	1192	.	.	Atlas-SNP
MLXIPL	51085	hgsc.bcm.edu	hg19	7	73020290	73020290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MLXIPL	NM_032954	exon6	c.T770C	p.F257S	ATGGTGAAGAGAG	.	54.0	28.0	220.0	1.0	.	54	.	.	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	hg19	7	83021890	83021890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA3E	NM_012431	exon14	c.A1648G	p.T550A	TGCCTGTTGGGTA	.	153.0	76.0	44.0	0.0	.	125	.	.	Atlas-SNP
SGCE	8910	hgsc.bcm.edu	hg19	7	94232701	94232701	+	Silent	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SGCE	NM_001099401	exon6	c.A726T	p.P242P	ATTCTGTGGATTT	.	292.0	107.0	47.0	0.0	.	68	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121684588	121684588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	PTPRZ1	NM_002851	exon23	c.C6050T	p.P2017L	CTGGACCAGCAGG	.	138.0	24.0	27.0	0.0	.	605	.	.	Atlas-SNP
CLCN1	1180	hgsc.bcm.edu	hg19	7	143039472	143039472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CLCN1	NM_000083	exon16	c.A1804G	p.T602A	AAATATACCATCT	.	158.0	57.0	20.0	0.0	.	141	.	.	Atlas-SNP
TRIM55	84675	hgsc.bcm.edu	hg19	8	67067941	67067941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TRIM55	NM_033058	exon10	c.A1608C	p.L536F	TACTTTAATGGGT	.	253.0	120.0	59.0	0.0	.	91	.	.	Atlas-SNP
TSTA3	7264	hgsc.bcm.edu	hg19	8	144698895	144698895	+	Splice_Site	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TSTA3	.	.	.	.	TGCACCTGTAATG	.	82.0	47.0	148.0	0.0	.	23	.	.	Atlas-SNP
KLF9	687	hgsc.bcm.edu	hg19	9	73027906	73027906	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	KLF9	NM_001206	exon1	c.C374G	p.S125C	AGGAGGGAGAGCG	.	149.0	42.0	558.0	0.0	.	16	.	.	Atlas-SNP
DAPK1	1612	hgsc.bcm.edu	hg19	9	90318036	90318036	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DAPK1	NM_004938	exon25	c.G2964A	p.L988L	GTCGCTGCAGCAG	.	55.0	17.0	302.0	0.0	.	329	.	.	Atlas-SNP
RXRA	6256	hgsc.bcm.edu	hg19	9	137328351	137328351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	RXRA,bladder,carcinoma,0,5	RXRA	NM_002957	exon10	c.C1280T	p.S427F	TGCGCTCCATCGG	.	78.0	23.0	283.0	0.0	.	52	.	.	Atlas-SNP
HTR7	3363	hgsc.bcm.edu	hg19	10	92508894	92508894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HTR7	NM_019860	exon2	c.G997A	p.V333I	CCCCGACGATGAT	.	156.0	43.0	252.0	0.0	.	122	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1077628	1077628	+	Silent	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	MUC2	NM_002457	exon3	c.G378A	p.L126L	CGGGCTGCTCATT	.	82.0	22.0	382.0	1.0	.	614	.	.	Atlas-SNP
OR51I2	390064	hgsc.bcm.edu	hg19	11	5474986	5474986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OR51I2	NM_001004754	exon1	c.C268T	p.R90C	AATGCCCGCAACA	.	123.0	28.0	97.0	0.0	.	76	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	19955620	19955620	+	Silent	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	NAV2	NM_001244963	exon8	c.C1899G	p.S633S	ACACTCCAGTTCC	.	50.0	30.0	316.0	0.0	.	255	.	.	Atlas-SNP
CD5	921	hgsc.bcm.edu	hg19	11	60893315	60893315	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CD5	NM_014207	exon10	c.1490+2T>A	.	TAAAGGTGAGCCC	.	36.0	19.0	132.0	0.0	.	52	.	.	Atlas-SNP
GDPD4	220032	hgsc.bcm.edu	hg19	11	76969478	76969478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GDPD4	NM_182833	exon10	c.G817A	p.D273N	GGAAATCCCAGTT	.	164.0	93.0	33.0	0.0	.	49	.	.	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	hg19	11	77672039	77672039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	INTS4	NM_033547	exon5	c.A617T	p.D206V	TCTTGGTCACTGA	.	195.0	23.0	53.0	0.0	.	89	.	.	Atlas-SNP
SMCO3	0	hgsc.bcm.edu	hg19	12	14959587	14959587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_001013698	exon2	c.G28C	p.E10Q	GGTTCTCTGGGTA	.	94.0	72.0	41.0	0.0	.	.	.	.	Atlas-SNP
UGGT2	55757	hgsc.bcm.edu	hg19	13	96599294	96599294	+	Silent	SNP	T	T	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	UGGT2	NM_020121	exon15	c.A1674G	p.V558V	CACGTGTACTATA	.	261.0	105.0	39.0	0.0	.	127	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48063289	48063289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SEMA6D	NM_153618	exon19	c.C2529A	p.N843K	CTCAAACTCCAAT	.	111.0	36.0	23.0	0.0	.	322	.	.	Atlas-SNP
GNB5	10681	hgsc.bcm.edu	hg19	15	52476791	52476791	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GNB5	NM_016194	exon2	c.A83T	p.K28M	GACTTCTTGAAAA	.	77.0	37.0	25.0	0.0	.	28	.	.	Atlas-SNP
DNAJA2	10294	hgsc.bcm.edu	hg19	16	46991020	46991020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	DNAJA2	NM_005880	exon9	c.G1160T	p.R387M	TCACGCCTCTGAC	.	143.0	66.0	18.0	0.0	.	28	.	.	Atlas-SNP
TMEM132E	124842	hgsc.bcm.edu	hg19	17	32956067	32956067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	TMEM132E	NM_207313	exon5	c.C912A	p.D304E	GCTGGACTTTGAA	.	138.0	27.0	466.0	0.0	.	122	.	.	Atlas-SNP
APOH	350	hgsc.bcm.edu	hg19	17	64222231	64222231	+	Missense_Mutation	SNP	G	G	A	rs55645281		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	APOH,NS,malignant_melanoma,0,1	APOH	NM_000042	exon3	c.C253T	p.P85S	CAAAAGGACATAC	.	111.0	76.0	33.0	0.0	.	45	.	.	Atlas-SNP
HELZ	9931	hgsc.bcm.edu	hg19	17	65214794	65214794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	HELZ	NM_014877	exon4	c.G127T	p.D43Y	TGAAGTCTGCCAT	.	169.0	33.0	31.0	0.0	.	160	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	hg19	18	43435550	43435550	+	Silent	SNP	G	G	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	EPG5	NM_020964	exon43	c.C7545G	p.P2515P	AGCTTTGGGGGTC	.	75.0	11.0	27.0	0.0	.	199	.	.	Atlas-SNP
LMAN1	3998	hgsc.bcm.edu	hg19	18	56998712	56998712	+	Silent	SNP	C	C	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LMAN1	NM_005570	exon12	c.G1434T	p.T478T	GTGGACCGTAGAC	.	185.0	21.0	40.0	0.0	.	57	.	.	Atlas-SNP
GRIN3B	116444	hgsc.bcm.edu	hg19	19	1004576	1004576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GRIN3B	NM_138690	exon3	c.G1076A	p.S359N	CAGGCAGCTCCCA	.	44.0	12.0	225.0	0.0	.	46	.	.	Atlas-SNP
SMIM7	79086	hgsc.bcm.edu	hg19	19	16770916	16770916	+	Silent	SNP	G	G	T	rs11555682	bycluster	TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_024104	exon1	c.C6A	p.I2I	GTCTCCGATCATC	.	51.0	13.0	304.0	0.0	.	.	.	.	Atlas-SNP
SMIM7	79086	hgsc.bcm.edu	hg19	19	16770917	16770917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	.	NM_024104	exon1	c.T5A	p.I2N	TCTCCGATCATCG	.	51.0	13.0	302.0	0.0	.	.	.	.	Atlas-SNP
LARGE	9215	hgsc.bcm.edu	hg19	22	33960897	33960897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	LARGE	NM_004737	exon7	c.G724A	p.D242N	CCGTGTCAAGGAC	.	119.0	46.0	13.0	0.0	.	98	.	.	Atlas-SNP
CYB5R3	1727	hgsc.bcm.edu	hg19	22	43024254	43024254	+	Missense_Mutation	SNP	C	C	T	rs367914897		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CYB5R3	NM_001171660	exon5	c.G466A	p.A156T	CTCCAGCGGGAAA	.	78.0	8.0	207.0	0.0	.	31	.	.	Atlas-SNP
RXRB	6257	hgsc.bcm.edu	hg19	6	33166198	33166198	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	RXRB	NM_001270401	exon3	c.528delT	p.P176fs	.	.	57.0	32.0	177.0	0.0	.	34	.	.	Atlas-Indel,Pindel
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992605	67992606	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.701_702insC	p.L234fs	.	.	124.0	34.0	236.0	0.0	.	54	.	.	Atlas-INDEL
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992584	67992585	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.680_681insC	p.L227fs	.	.	110.0	33.0	185.0	0.0	.	54	.	.	Atlas-INDEL
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992586	67992606	+	In_Frame_Del	DEL	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	GATGAGGGGATGTATCCTTTG	GATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.681_701del	p.227_234del	.	.	96.0	28.0	186.0	0.0	.	54	.	.	Atlas-INDEL
GJB1	2705	hgsc.bcm.edu	hg19	X	70443636	70443637	+	In_Frame_Ins	INS	-	-	TCATCT	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	GJB1	NM_001097642	exon2	c.79_80insTCATCT	p.V27delinsVIF	.	.	97.0	40.0	322.0	0.0	.	21	.	.	Atlas-Indel,Pindel
CSMD3	114788	hgsc.bcm.edu	hg19	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	.	.	120.0	44.0	30.0	0.0	.	2325	.	.	Atlas-Indel,Pindel
FBXL7	23194	hgsc.bcm.edu	hg19	5	15937055	15937055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	FBXL7,colon,carcinoma,0,1	FBXL7	NM_012304	exon4	c.1235delG	p.C412fs	.	.	68.0	17.0	326.0	0.0	.	138	.	.	Atlas-Indel,Pindel
OSBPL11	114885	hgsc.bcm.edu	hg19	3	125313601	125313605	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	CTCTC	CTCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	OSBPL11	NM_022776	exon1	c.41_45del	p.14_15del	.	.	153.0	36.0	384.0	0.0	.	64	.	.	Atlas-Indel,Pindel
ATXN1	6310	hgsc.bcm.edu	hg19	6	16327918	16327919	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	ATXN1,rectum,carcinoma,0,1	ATXN1	NM_001128164	exon7	c.624_625insGCA	p.Q208delinsQQ	.	.	77.0	17.0	244.0	0.0	.	117	.	.	Atlas-INDEL
ANKRD1	27063	hgsc.bcm.edu	hg19	10	92679010	92679011	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	ANKRD1,NS,carcinoma,0,1	ANKRD1	NM_014391	exon3	c.223_224insA	p.L75fs	.	.	89.0	35.0	17.0	0.0	.	50	.	.	Pindel
CDC27	996	hgsc.bcm.edu	hg19	17	45234594	45234729	+	Frame_Shift_Del	DEL	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	CTGAAACAGAAAATTTCTACCAAGTCATTCACAATATATTATTTAGTTCAGATCATTCTTTGTAGTTTTCATAATATTTTGAACACTAGAATATAAGACACTTACAATTGTGTCCTGGGGTGTTTCCGTAAGAACT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	CDC27	NM_001114091	exon6	c.601_631del	p.201_211del	.	.	214.0	19.0	30.0	0.0	.	337	.	.	Pindel
SOCS6	9306	hgsc.bcm.edu	hg19	18	67992585	67992606	+	Frame_Shift_Del	DEL	AGATGAGGGGATGTATCCTTTG	AGATGAGGGGATGTATCCTTTG	-	novel		TCGA-DD-A1EJ-01A-11D-A152-10	TCGA-DD-A1EJ-10A-01D-A152-10	AGATGAGGGGATGTATCCTTTG	AGATGAGGGGATGTATCCTTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	9c681cd9-25fb-42ac-aa6b-bb962882fa22	ff037e6b-c763-416f-91ef-bf0ec01a4225	.	SOCS6	NM_004232	exon2	c.680_701del	p.227_234del	.	.	119.0	54.0	213.0	0.0	.	54	.	.	Pindel