Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm SEMA6C 10500 hgsc.bcm.edu hg19 1 151110260 151110260 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SEMA6C NM_001178061 exon10 c.A683G p.Q228R AAGGCCTGGACAA . 552.0 29.0 186.0 0.0 . 70 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084221 152084221 + Missense_Mutation SNP A A C rs202112040 TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TCHH NM_007113 exon3 c.T1472G p.L491R TCCTCGAGCTTCA . 263.0 17.0 80.0 0.0 . 275 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084224 152084224 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TCHH NM_007113 exon3 c.A1469G p.K490R TCGAGCTTCAGCC . 267.0 12.0 79.0 0.0 . 275 . . Atlas-SNP PGLYRP3 114771 hgsc.bcm.edu hg19 1 153277442 153277442 + Silent SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PGLYRP3 NM_052891 exon3 c.C357A p.A119A AAAGAAGGCGATG . 590.0 113.0 198.0 0.0 . 55 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155429586 155429586 + Splice_Site SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ASH1L NM_018489 exon5 c.5086+2C>A . GCACTAGCCTGTT . 95.0 4.0 34.0 0.0 . 279 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158622406 158622406 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SPTA1 NM_003126 exon23 c.C3226T p.R1076C GACGACGTCTGCG . 300.0 106.0 127.0 0.0 . 720 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158624516 158624516 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SPTA1 NM_003126 exon21 c.A2921G p.E974G ACTCCCTCCACTG . 227.0 35.0 79.0 0.0 . 720 . . Atlas-SNP PVRL4 81607 hgsc.bcm.edu hg19 1 161044015 161044015 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PVRL4 NM_030916 exon6 c.C1149T p.T383T TTTCTGGGTCATC . 620.0 126.0 204.0 0.0 . 48 . . Atlas-SNP GPR52 9293 hgsc.bcm.edu hg19 1 174417683 174417683 + Missense_Mutation SNP A A T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . GPR52 NM_005684 exon1 c.A434T p.K145M TAACCAAGCCTCT . 410.0 157.0 135.0 0.0 . 40 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181479711 181479711 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f CACNA1E_ENST00000367573,NS,carcinoma,0,2 CACNA1E NM_001205293 exon2 c.G365A p.R122Q TGTCCCGAAGACT . 418.0 69.0 167.0 0.0 . 778 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186086707 186086707 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . HMCN1 NM_031935 exon77 c.G11800A p.G3934S AAAAATGGTATAA . 307.0 101.0 104.0 0.0 . 797 . . Atlas-SNP TP53BP2 7159 hgsc.bcm.edu hg19 1 223968572 223968572 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TP53BP2 NM_001031685 exon18 c.C3388G p.Q1130E TCCTTTGTCTTGG . 83.0 6.0 61.0 0.0 . 144 . . Atlas-SNP DNAH7 56171 hgsc.bcm.edu hg19 2 196891544 196891544 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DNAH7 NM_018897 exon7 c.A607G p.I203V TAACTATGCTGTC . 129.0 67.0 108.0 0.0 . 512 . . Atlas-SNP AGAP1 116987 hgsc.bcm.edu hg19 2 237032725 237032725 + Missense_Mutation SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGAP1 NM_001037131 exon18 c.A2533G p.N845D AACAATAACCGGA . 382.0 174.0 293.0 0.0 . 95 . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 79174651 79174651 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ROBO1 NM_002941 exon3 c.C127T p.P43S GGATTGGCGTCCC . 334.0 149.0 269.0 0.0 . 833 . . Atlas-SNP AGPAT9 84803 hgsc.bcm.edu hg19 4 84457903 84457903 + Missense_Mutation SNP T T A rs150911365 bycluster;alternate_allele TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGPAT9 NM_001256421 exon2 c.T128A p.V43E TCCTAGTGAAAAC . 36.0 28.0 47.0 0.0 . 41 . T|1.000;C|0.000 Atlas-SNP WDFY3 23001 hgsc.bcm.edu hg19 4 85724505 85724505 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . WDFY3 NM_014991 exon16 c.C2545T p.P849S CTCCAGGATGAAT . 233.0 170.0 345.0 0.0 . 314 . . Atlas-SNP WDR17 116966 hgsc.bcm.edu hg19 4 177058704 177058704 + Missense_Mutation SNP G G A rs200199041 bycluster TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . WDR17 NM_170710 exon10 c.G1373A p.R458Q CTTCCCGAAATGG . 32.0 26.0 61.0 0.0 . 198 . . Atlas-SNP MARCH6 10299 hgsc.bcm.edu hg19 5 10391780 10391780 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f .,1 MARCH6 NM_005885 exon7 c.G703C p.D235H GAGGAGGACAATG . 246.0 55.0 168.0 0.0 . 89 . . Atlas-SNP SV2C 22987 hgsc.bcm.edu hg19 5 75427868 75427868 + Missense_Mutation SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . SV2C NM_014979 exon2 c.G293T p.S98I TCCCCAGTATGAA . 192.0 80.0 151.0 0.0 . 97 . . Atlas-SNP CXXC5 51523 hgsc.bcm.edu hg19 5 139060853 139060853 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CXXC5 NM_016463 exon2 c.C745G p.L249V GGAGAGCTGGCCT . 115.0 8.0 99.0 0.0 . 27 . . Atlas-SNP DDX41 51428 hgsc.bcm.edu hg19 5 176940709 176940709 + Missense_Mutation SNP G G T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DDX41 NM_016222 exon10 c.C1075A p.R359S TGGTACGGATGTC . 212.0 105.0 183.0 0.0 . 49 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136589436 136589436 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BCLAF1 NM_014739 exon10 c.C2261T p.S754F GCTGAAGAGGATG . 94.0 11.0 106.0 0.0 . 203 . . Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11633070 11633070 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . THSD7A NM_015204 exon3 c.G1082A p.C361Y ACCTGGCACTCTT . 136.0 61.0 128.0 0.0 . 219 . . Atlas-SNP PKD1L1 168507 hgsc.bcm.edu hg19 7 47876604 47876604 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . PKD1L1 NM_138295 exon37 c.A5858G p.H1953R GGCGTGTGCAGGT . 373.0 84.0 291.0 0.0 . 328 . . Atlas-SNP POM121L12 285877 hgsc.bcm.edu hg19 7 53103948 53103948 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . POM121L12 NM_182595 exon1 c.C584G p.P195R ACGGGCCGTTGTG . 71.0 33.0 43.0 0.0 . 146 . . Atlas-SNP JHDM1D 80853 hgsc.bcm.edu hg19 7 139876582 139876582 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . JHDM1D NM_030647 exon1 c.G156C p.M52I CTCGATCATGAAG . 75.0 29.0 49.0 0.0 . 54 . . Atlas-SNP MYOM2 9172 hgsc.bcm.edu hg19 8 2054129 2054129 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MYOM2 NM_003970 exon22 c.T2832C p.C944C CTGGTGTAAATCC . 172.0 105.0 128.0 0.0 . 251 . . Atlas-SNP FGF20 26281 hgsc.bcm.edu hg19 8 16850701 16850701 + Silent SNP G G A rs376980441 TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . FGF20 NM_019851 exon3 c.C516T p.D172D AGTTCCGTCTTTG . 151.0 51.0 114.0 0.0 . 16 . . Atlas-SNP KIAA0146 23514 hgsc.bcm.edu hg19 8 48309166 48309166 + Silent SNP A A T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f KIAA0146,NS,carcinoma,0,1 KIAA0146 NM_001080394 exon6 c.A756T p.S252S AAATTCAGCAAAG . 92.0 38.0 100.0 0.0 . 64 . . Atlas-SNP RECQL4 9401 hgsc.bcm.edu hg19 8 145741755 145741755 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . RECQL4 NM_004260 exon5 c.G748C p.G250R GGCTCCCCACACG . 41.0 13.0 22.0 0.0 . 75 . . Atlas-SNP CIZ1 25792 hgsc.bcm.edu hg19 9 130941315 130941315 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CIZ1 NM_001257975 exon8 c.G1261A p.V421M GCTGCACCTGCCT . 174.0 81.0 110.0 0.0 . 75 . . Atlas-SNP AGAP6 414189 hgsc.bcm.edu hg19 10 51748622 51748622 + Silent SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f AGAP6,bladder,carcinoma,0,1 AGAP6 NM_001077665 exon1 c.A147G p.V49V TGCTGTACAGCCT . 27.0 3.0 8.0 0.0 . 53 . . Atlas-SNP NAV2 89797 hgsc.bcm.edu hg19 11 20083871 20083871 + Missense_Mutation SNP C C T novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f NAV2,NS,malignant_melanoma,0,1 NAV2 NM_001244963 exon22 c.C5018T p.S1673F CACTCTCCTTGGT . 41.0 22.0 22.0 0.0 . 255 . . Atlas-SNP GAS2 2620 hgsc.bcm.edu hg19 11 22777439 22777439 + Missense_Mutation SNP C C G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . GAS2 NM_177553 exon7 c.C663G p.F221L CAAGTTCTGTGTG . 137.0 38.0 95.0 0.0 . 46 . . Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50529577 50529577 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . . NM_147190 exon8 c.C810T p.D270D AAGGGTGTCACAG . 117.0 46.0 107.0 0.0 . . . . Atlas-SNP AGAP2 116986 hgsc.bcm.edu hg19 12 58125709 58125709 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . AGAP2 NM_001122772 exon8 c.C1836T p.L612L GGACGGGAGGGAA . 109.0 50.0 81.0 0.0 . 167 . . Atlas-SNP EDNRB 1910 hgsc.bcm.edu hg19 13 78474006 78474006 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . EDNRB NM_001201397 exon7 c.A1452G p.K484K GCAGTTTTTGAAT . 20.0 16.0 34.0 0.0 . 172 . . Atlas-SNP ITGAM 3684 hgsc.bcm.edu hg19 16 31282347 31282347 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ITGAM NM_000632 exon6 c.G500A p.R167Q ACTTTCGGCGGAT . 203.0 63.0 151.0 0.0 . 137 . . Atlas-SNP BBS2 583 hgsc.bcm.edu hg19 16 56548459 56548459 + Missense_Mutation SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BBS2 NM_031885 exon2 c.A251T p.N84I TCAGGGTTCAATA . 140.0 109.0 256.0 0.0 . 67 . . Atlas-SNP CDH19 28513 hgsc.bcm.edu hg19 18 64239420 64239420 + Missense_Mutation SNP G G C rs368840152 alternate_allele TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CDH19 NM_021153 exon2 c.C22G p.R8G TAAAACGCAGCAG . 142.0 76.0 103.0 0.0 . 141 . . Atlas-SNP APC2 10297 hgsc.bcm.edu hg19 19 1456316 1456316 + Silent SNP G G A rs138830892 alternate_allele TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . APC2 NM_005883 exon8 c.G729A p.A243A GCTGGCGGTGAAG . 201.0 68.0 159.0 0.0 . 50 . G|1.000;C|0.000 Atlas-SNP BRD4 23476 hgsc.bcm.edu hg19 19 15349580 15349580 + Nonsense_Mutation SNP C C A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BRD4 NM_058243 exon19 c.G3994T p.E1332X CCTGCTCCCGCTT . 135.0 66.0 62.0 0.0 . 172 . . Atlas-SNP CHERP 10523 hgsc.bcm.edu hg19 19 16636060 16636060 + Missense_Mutation SNP G G C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . CHERP NM_006387 exon10 c.C1734G p.F578L GGCAGGGAAGTCC . 187.0 67.0 98.0 0.0 . 70 . . Atlas-SNP ZNF431 170959 hgsc.bcm.edu hg19 19 21366647 21366647 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF431 NM_133473 exon5 c.G1541A p.C514Y ACAAATGTGAAGA . 78.0 26.0 37.0 0.0 . 71 . . Atlas-SNP ZNF461 92283 hgsc.bcm.edu hg19 19 37130125 37130125 + Silent SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF461 NM_153257 exon6 c.A1122T p.I374I CTGATGTATAGTA . 90.0 38.0 81.0 0.0 . 73 . . Atlas-SNP ZNF585A 199704 hgsc.bcm.edu hg19 19 37642633 37642633 + Missense_Mutation SNP C C A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ZNF585A NM_199126 exon6 c.G2003T p.C668F TTCCCACACTCAG . 358.0 130.0 226.0 0.0 . 117 . . Atlas-SNP TSEN34 79042 hgsc.bcm.edu hg19 19 54696036 54696036 + Missense_Mutation SNP A A G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . TSEN34 NM_024075 exon4 c.A557G p.Q186R TTGTCCAGCTGGC . 259.0 126.0 206.0 1.0 . 17 . . Atlas-SNP BCL2L1 598 hgsc.bcm.edu hg19 20 30309743 30309743 + Silent SNP T T A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . BCL2L1 NM_138578 exon2 c.A279T p.A93A GTCGCCTGCCTCC . 279.0 83.0 141.0 0.0 . 23 . . Atlas-SNP ADNP 23394 hgsc.bcm.edu hg19 20 49508566 49508566 + Silent SNP A A C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADNP NM_015339 exon5 c.T2685G p.P895P AAAAACAGGGTCA . 161.0 84.0 112.0 0.0 . 106 . . Atlas-SNP ADAMTS1 9510 hgsc.bcm.edu hg19 21 28210546 28210546 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADAMTS1 NM_006988 exon9 c.A2256G p.E752E TTTCACTTCGATG . 83.0 35.0 69.0 0.0 . 131 . . Atlas-SNP IFNAR1 3454 hgsc.bcm.edu hg19 21 34721747 34721747 + Silent SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . IFNAR1 NM_000629 exon8 c.T1041C p.H347H ATTCCATATCTAT . 101.0 45.0 106.0 0.0 . 44 . . Atlas-SNP DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765414 27765414 + Silent SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . DCAF8L2 NM_001136533 exon1 c.G402A p.E134E GGAGGAGGAGGAG . 76.0 11.0 45.0 0.0 . 79 . . Atlas-SNP MAGEE1 57692 hgsc.bcm.edu hg19 X 75649900 75649900 + Missense_Mutation SNP G G A novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . MAGEE1 NM_020932 exon1 c.G1577A p.R526H AATATCGCAACCA . 105.0 30.0 118.0 0.0 . 236 . . Atlas-SNP ND4 0 hgsc.bcm.edu hg19 MT 11250 11250 + Missense_Mutation SNP T T C novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . . ENST00000361381 exon1 c.T491C p.L164P TCGCACTAATTTA . 18.0 6.0 7.0 0.0 . . . . Atlas-SNP NPAS2 4862 hgsc.bcm.edu hg19 2 101580582 101580590 + In_Frame_Del DEL GGAAAGGAG GGAAAGGAG - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 GGAAAGGAG GGAAAGGAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f NPAS2,colon,carcinoma,+1,1 NPAS2 NM_002518 exon8 c.660_668del p.220_223del . . 91.0 24.0 87.0 0.0 . 88 . . Atlas-Indel,Pindel ABR 29 hgsc.bcm.edu hg19 17 909373 909374 + Frame_Shift_Ins INS - - G novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f .,2 ABR NM_021962 exon23 c.2527_2528insC p.I843fs . . 139.0 47.0 102.0 0.0 . 119 . . Atlas-Indel,Pindel OR10C1 442194 hgsc.bcm.edu hg19 6 29408254 29408254 + Frame_Shift_Del DEL G G - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . OR10C1 NM_013941 exon1 c.461delT p.V154fs . . 172.0 52.0 98.0 0.0 . 58 . . Atlas-Indel,Pindel INSRR 3645 hgsc.bcm.edu hg19 1 156828374 156828381 + Frame_Shift_Del DEL GCAGGCAT GCAGGCAT - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 GCAGGCAT GCAGGCAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . INSRR NM_014215 exon1 c.34_41del p.12_14del . . 350.0 28.0 133.0 0.0 . 309 . . Atlas-Indel,Pindel ADCY2 108 hgsc.bcm.edu hg19 5 7706898 7706910 + Frame_Shift_Del DEL TGGGCGTGCATTC TGGGCGTGCATTC - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TGGGCGTGCATTC TGGGCGTGCATTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ADCY2 NM_020546 exon8 c.1150_1162del p.384_388del . . 258.0 59.0 227.0 0.0 . 337 . . Atlas-Indel,Pindel FHOD3 80206 hgsc.bcm.edu hg19 18 34340646 34340647 + Frame_Shift_Ins INS - - GT novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . FHOD3 NM_025135 exon23 c.3976_3977insGT p.E1326fs . . 157.0 89.0 85.0 0.0 . 210 . . Atlas-Indel,Pindel UNC13C 440279 hgsc.bcm.edu hg19 15 54914531 54914531 + Frame_Shift_Del DEL C C - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . UNC13C NM_001080534 exon29 c.6112delT p.S2038fs . . 110.0 43.0 90.0 0.0 . 674 . . Atlas-Indel,Pindel ERRFI1 54206 hgsc.bcm.edu hg19 1 8074333 8074340 + Frame_Shift_Del DEL TCCTCTTC TCCTCTTC - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TCCTCTTC TCCTCTTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ERRFI1 NM_018948 exon4 c.320_327del p.107_109del . . 28.0 15.0 123.0 0.0 . 42 . . Atlas-INDEL ERRFI1 54206 hgsc.bcm.edu hg19 1 8074342 8074343 + Frame_Shift_Del DEL TG TG - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TG TG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ERRFI1 NM_018948 exon4 c.317_318del p.106_106del . . 26.0 15.0 115.0 0.0 . 42 . . Atlas-INDEL ERRFI1 54206 hgsc.bcm.edu hg19 1 8074333 8074343 + Frame_Shift_Del DEL TCCTCTTCATG TCCTCTTCATG - novel TCGA-DD-A4NN-01A-11D-A28X-10 TCGA-DD-A4NN-10A-01D-A28X-10 TCCTCTTCATG TCCTCTTCATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 472abc15-0124-4700-8026-8eed68cbcde9 7d51dd41-e8be-488c-bbfe-66156768782f . ERRFI1 NM_018948 exon4 c.317_327del p.106_109del . . 29.0 17.0 117.0 0.0 . 42 . . Pindel