Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
SYNC	81493	hgsc.bcm.edu	hg19	1	33160953	33160953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SYNC	NM_001161708	exon2	c.T746C	p.V249A	TTTGTCACTTTGA	.	71.0	35.0	67.0	0.0	.	36	.	.	Atlas-SNP
RBM15	64783	hgsc.bcm.edu	hg19	1	110882218	110882218	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	RBM15	NM_022768	exon1	c.C191G	p.S64W	AGGACTCGACTTC	.	280.0	112.0	240.0	0.0	.	93	.	.	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154062058	154062058	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	NUP210L	NM_001159484	exon16	c.C2200T	p.R734X	CAATTCGGAATGT	.	282.0	58.0	123.0	0.0	.	181	.	.	Atlas-SNP
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182922018	182922018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SHCBP1L	NM_030933	exon1	c.C251A	p.A84E	GCCGCCGCCTCTC	.	226.0	12.0	97.0	0.0	.	64	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38103672	38103672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	DLEC1	NM_007337	exon4	c.C686A	p.P229H	CCCTACCTGGATG	.	86.0	34.0	79.0	0.0	.	278	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113755465	113755465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KIAA1407	NM_020817	exon5	c.G584A	p.R195K	TTATGTCTCATCT	.	195.0	74.0	137.0	0.0	.	80	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113755521	113755521	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KIAA1407	NM_020817	exon5	c.G528A	p.R176R	TTCCTTCCTTCCA	.	207.0	81.0	150.0	0.0	.	80	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113755536	113755536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KIAA1407	NM_020817	exon5	c.G513A	p.M171I	ATCTTCCATCATT	.	208.0	83.0	148.0	0.0	.	80	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113755539	113755539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KIAA1407	NM_020817	exon5	c.G510A	p.M170I	TTCCATCATTGCA	.	204.0	81.0	151.0	0.0	.	80	.	.	Atlas-SNP
KIAA1407	57577	hgsc.bcm.edu	hg19	3	113755550	113755550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KIAA1407	NM_020817	exon5	c.G499A	p.D167N	CAGAATCTACCAC	.	204.0	75.0	156.0	0.0	.	80	.	.	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	hg19	4	73169792	73169792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ADAMTS3	NM_014243	exon17	c.A2266C	p.K756Q	GGTTCTTAATAGC	.	112.0	49.0	102.0	0.0	.	164	.	.	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	hg19	4	88536436	88536436	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	DSPP	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	348.0	28.0	265.0	0.0	.	174	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162421233	162421233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	FSTL5	NM_020116	exon12	c.A1393G	p.I465V	GTTGTATCACTTT	.	182.0	18.0	123.0	0.0	.	207	.	.	Atlas-SNP
TCERG1	10915	hgsc.bcm.edu	hg19	5	145847914	145847914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	TCERG1	NM_006706	exon6	c.G1146T	p.M382I	AGCAATGATGCAA	.	209.0	10.0	125.0	0.0	.	148	.	.	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	hg19	6	26156941	26156941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	HIST1H1E	NM_005321	exon1	c.A323C	p.N108T	AACTCAACAAGAA	.	239.0	95.0	202.0	0.0	.	69	.	.	Atlas-SNP
CALCR	799	hgsc.bcm.edu	hg19	7	93073038	93073038	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	CALCR	NM_001164737	exon11	c.A782T	p.Q261L	ATGTACTGGTGGA	.	186.0	67.0	135.0	0.0	.	200	.	.	Atlas-SNP
SULF1	23213	hgsc.bcm.edu	hg19	8	70551053	70551053	+	Silent	SNP	A	A	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SULF1	NM_001128205	exon21	c.A2511G	p.G837G	TCAAGGATATAAG	.	401.0	27.0	297.0	0.0	.	153	.	.	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	hg19	8	77768190	77768190	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ZFHX4	NM_024721	exon10	c.C9033T	p.L3011L	TACCCTCTGCGGG	.	215.0	83.0	162.0	0.0	.	878	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113301744	113301744	+	Missense_Mutation	SNP	C	C	T	rs2193430	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele	TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	CSMD3	NM_198123	exon57	c.G8998A	p.V3000I	GAGGAACGCCAGG	.	59.0	19.0	45.0	0.0	.	2325	.	C|0.991;G|0.009	Atlas-SNP
ACO1	48	hgsc.bcm.edu	hg19	9	32434613	32434613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ACO1	NM_002197	exon17	c.G2013T	p.L671F	AAATTTGGGAGAT	.	114.0	5.0	130.0	0.0	.	149	.	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	hg19	9	120476829	120476829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.,1	TLR4	NM_138554	exon3	c.G2423T	p.W808L	TCTTCTGGAGACG	.	90.0	66.0	96.0	0.0	.	220	.	.	Atlas-SNP
GPR144	347088	hgsc.bcm.edu	hg19	9	127215648	127215648	+	Silent	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	GPR144	NM_001161808	exon4	c.G672T	p.L224L	GGCGCTGTTCTCC	.	14.0	10.0	31.0	0.0	.	33	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25887038	25887038	+	Missense_Mutation	SNP	C	C	T	rs143609365	bycluster;alternate_allele	TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	GPR158	NM_020752	exon11	c.C2483T	p.T828M	ACCAAACGGAAGA	.	440.0	168.0	367.0	0.0	.	255	.	C|1.000;G|0.000	Atlas-SNP
P4HA1	5033	hgsc.bcm.edu	hg19	10	74810844	74810844	+	Nonsense_Mutation	SNP	G	G	T	rs200368222	alternate_allele	TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	P4HA1_ENST00000412021,NS,carcinoma,0,3	P4HA1	NM_001142596	exon7	c.C867A	p.Y289X	CATTTCGTACTTC	.	124.0	5.0	102.0	0.0	.	86	.	.	Atlas-SNP
SPTBN2	6712	hgsc.bcm.edu	hg19	11	66472298	66472298	+	Silent	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SPTBN2	NM_006946	exon14	c.C2449T	p.L817L	GGCTCAGTGTGGG	.	53.0	22.0	51.0	0.0	.	188	.	.	Atlas-SNP
SUV420H1	51111	hgsc.bcm.edu	hg19	11	67926442	67926442	+	Silent	SNP	A	A	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SUV420H1	NM_017635	exon11	c.T1371C	p.H457H	CTTGCAATGATTT	.	134.0	61.0	110.0	0.0	.	125	.	.	Atlas-SNP
MMP7	4316	hgsc.bcm.edu	hg19	11	102395766	102395766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	MMP7	NM_002423	exon4	c.C514T	p.P172S	TTCCTGGCCCATC	.	149.0	52.0	135.0	0.0	.	27	.	.	Atlas-SNP
PCSK7	9159	hgsc.bcm.edu	hg19	11	117097882	117097882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	PCSK7	NM_004716	exon5	c.C760T	p.R254C	CGATGCGGCTCCC	.	70.0	20.0	57.0	0.0	.	59	.	.	Atlas-SNP
GLB1L3	112937	hgsc.bcm.edu	hg19	11	134179570	134179570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	GLB1L3	NM_001080407	exon11	c.G1012A	p.V338I	TTCAATGTATATA	.	109.0	47.0	102.0	0.0	.	102	.	.	Atlas-SNP
GALNT8	26290	hgsc.bcm.edu	hg19	12	4829970	4829970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	GALNT8	NM_017417	exon1	c.A127T	p.R43W	CTCCACAGGGAGC	.	227.0	91.0	156.0	0.0	.	89	.	.	Atlas-SNP
PRB3	5544	hgsc.bcm.edu	hg19	12	11421025	11421025	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	PRB3_ENST00000538488,NS,malignant_melanoma,0,4	PRB3	NM_006249	exon3	c.C158G	p.P53R	CCTGGAGGAGGTG	.	100.0	6.0	69.0	2.0	.	84	.	.	Atlas-SNP
NCKAP5L	57701	hgsc.bcm.edu	hg19	12	50190546	50190546	+	Missense_Mutation	SNP	G	G	A	rs369718554		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	NCKAP5L	NM_001037806	exon8	c.C1097T	p.A366V	GGGGGCGCCTGGT	.	87.0	26.0	84.0	0.0	.	142	.	.	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	hg19	12	56566407	56566407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SMARCC2	NM_139067	exon19	c.C1825T	p.R609C	CTGTGCGCAGCCC	.	133.0	23.0	104.0	0.0	.	212	.	.	Atlas-SNP
LTA4H	4048	hgsc.bcm.edu	hg19	12	96394788	96394788	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	LTA4H	NM_000895	exon19	c.G1815A	p.G605G	GTCTTTCCCCACC	.	124.0	11.0	86.0	0.0	.	38	.	.	Atlas-SNP
DAO	1610	hgsc.bcm.edu	hg19	12	109288134	109288134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	DAO	NM_001917	exon7	c.G603T	p.Q201H	GGGGCAGATCATG	.	129.0	55.0	126.0	0.0	.	58	.	.	Atlas-SNP
SBNO1	55206	hgsc.bcm.edu	hg19	12	123789129	123789129	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SBNO1	NM_001167856	exon28	c.G3768C	p.K1256N	AAATACCTTCTTA	.	427.0	153.0	342.0	1.0	.	138	.	.	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41313209	41313209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	INOC1,NS,malignant_melanoma,0,2	INO80	NM_017553	exon26	c.C3163G	p.P1055A	GTTCAGGGGCCCC	.	83.0	36.0	86.0	0.0	.	122	.	.	Atlas-SNP
ADAM10	102	hgsc.bcm.edu	hg19	15	58891888	58891888	+	Silent	SNP	A	A	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ADAM10	NM_001110	exon15	c.T2061G	p.A687A	GATCAGAGCAATT	.	144.0	56.0	127.0	0.0	.	59	.	.	Atlas-SNP
SNN	8303	hgsc.bcm.edu	hg19	16	11770176	11770176	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SNN	NM_003498	exon2	c.C261T	p.H87H	AGTCCACGGCTGA	.	154.0	60.0	133.0	0.0	.	7	.	.	Atlas-SNP
KRT33A	3883	hgsc.bcm.edu	hg19	17	39506775	39506775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KRT33A	NM_004138	exon1	c.C245T	p.A82V	AGCTCCGCGTTGT	.	212.0	81.0	148.0	0.0	.	53	.	.	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	hg19	18	29039050	29039050	+	Silent	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	DSG3	NM_001944	exon5	c.C427T	p.L143L	CTTATACTAACGG	.	429.0	156.0	317.0	1.0	.	172	.	.	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	hg19	18	45567333	45567333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ZBTB7C	NM_001039360	exon2	c.G146A	p.R49H	ACGGAGCGGTGGG	.	81.0	28.0	77.0	0.0	.	73	.	.	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	hg19	19	17100489	17100489	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	CPAMD8	NM_015692	exon13	c.C1500A	p.C500X	CAGGTAGCACTGG	.	137.0	71.0	131.0	0.0	.	192	.	.	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	hg19	19	39663569	39663569	+	Silent	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	PAK4	NM_001014832	exon3	c.G216T	p.R72R	CGTGCGGGGCAGC	.	202.0	82.0	129.0	0.0	.	40	.	.	Atlas-SNP
LRFN1	57622	hgsc.bcm.edu	hg19	19	39805727	39805727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	LRFN1	NM_020862	exon1	c.G250C	p.D84H	CGAAGTCTCGGCG	.	58.0	18.0	56.0	0.0	.	59	.	.	Atlas-SNP
SNAP25	6616	hgsc.bcm.edu	hg19	20	10273637	10273637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SNAP25	NM_003081	exon5	c.C271G	p.P91A	ATATGTCCTTGTA	.	149.0	31.0	137.0	0.0	.	79	.	.	Atlas-SNP
SNAP25	6616	hgsc.bcm.edu	hg19	20	10273846	10273846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SNAP25	NM_130811	exon5	c.C201G	p.I67M	CCAAATCAATAAG	.	236.0	88.0	212.0	0.0	.	79	.	.	Atlas-SNP
SPAG4	6676	hgsc.bcm.edu	hg19	20	34204001	34204001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	SPAG4	NM_003116	exon1	c.T76G	p.S26A	AACAGCTCAATGA	.	151.0	34.0	131.0	0.0	.	36	.	.	Atlas-SNP
COL20A1	57642	hgsc.bcm.edu	hg19	20	61943320	61943320	+	Silent	SNP	G	G	A	rs374496650		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	COL20A1	NM_020882	exon14	c.G1716A	p.A572A	CGACGCGGCACGA	.	100.0	35.0	85.0	0.0	.	137	.	.	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38845103	38845103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	DYRK1A	NM_001396	exon2	c.G128A	p.R43H	GTGACCGTCGCCA	.	58.0	42.0	103.0	0.0	.	85	.	.	Atlas-SNP
NOL12	79159	hgsc.bcm.edu	hg19	22	38083917	38083917	+	Silent	SNP	G	G	T	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	NOL12	NM_024313	exon2	c.G84T	p.R28R	CTGTAGGGAGTAC	.	325.0	22.0	295.0	0.0	.	22	.	.	Atlas-SNP
WDR45	11152	hgsc.bcm.edu	hg19	X	48934306	48934306	+	Silent	SNP	G	G	A	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	WDR45	NM_007075	exon6	c.C342T	p.D114D	TCACTTGTCATGG	.	271.0	120.0	214.0	0.0	.	40	.	.	Atlas-SNP
MAGIX	79917	hgsc.bcm.edu	hg19	X	49020204	49020204	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	MAGIX	NM_001099681	exon2	c.G133C	p.A45P	CGAGCTGCGGTCG	.	105.0	55.0	62.0	0.0	.	25	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	13337	13337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	.	ENST00000361567	exon1	c.T1001C	p.F334S	ACGCCTTCTTCAA	.	70.0	55.0	20.0	0.0	.	.	.	.	Atlas-SNP
KRT2	3849	hgsc.bcm.edu	hg19	12	53045631	53045632	+	In_Frame_Ins	INS	-	-	CGCCTCCAAAGCCGCTGC	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	KRT2	NM_000423	exon1	c.296_297insGCAGCGGCTTTGGAGGCG	p.G99delinsGSGFGGG	.	.	196.0	43.0	165.0	0.0	.	94	.	.	Atlas-INDEL
BAP1	8314	hgsc.bcm.edu	hg19	3	52437901	52437901	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	BAP1	NM_004656	exon13	c.1261delA	p.K421fs	.	.	24.0	16.0	54.0	0.0	.	371	.	.	Atlas-Indel,Pindel
PRLHR	2834	hgsc.bcm.edu	hg19	10	120354129	120354142	+	Frame_Shift_Del	DEL	GGCGCACGTCGTGC	GGCGCACGTCGTGC	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	GGCGCACGTCGTGC	GGCGCACGTCGTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	PRLHR	NM_004248	exon2	c.616_629del	p.206_210del	.	.	72.0	16.0	68.0	0.0	.	41	.	.	Atlas-Indel,Pindel
CHID1	66005	hgsc.bcm.edu	hg19	11	870164	870179	+	Frame_Shift_Del	DEL	CTGCAAGACAAAGGGA	CTGCAAGACAAAGGGA	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	CTGCAAGACAAAGGGA	CTGCAAGACAAAGGGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	CHID1	NM_001142676	exon13	c.1116_1116del	p.372_372del	.	.	125.0	17.0	115.0	0.0	.	29	.	.	Atlas-Indel,Pindel
ENOSF1	55556	hgsc.bcm.edu	hg19	18	712566	712566	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	ENOSF1	NM_017512	exon1	c.23delG	p.R8fs	.	.	197.0	71.0	153.0	0.0	.	44	.	.	Atlas-Indel,Pindel
LRFN1	57622	hgsc.bcm.edu	hg19	19	39805729	39805729	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	LRFN1	NM_020862	exon1	c.249delA	p.R83fs	.	.	58.0	18.0	55.0	0.0	.	59	.	.	Atlas-INDEL
XRN1	54464	hgsc.bcm.edu	hg19	3	142030539	142030542	+	Frame_Shift_Del	DEL	ACTT	ACTT	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	ACTT	ACTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	XRN1	NM_019001	exon42	c.4933_4936del	p.1645_1646del	.	.	192.0	146.0	205.0	0.0	.	138	.	.	Atlas-Indel,Pindel
CLEC16A	23274	hgsc.bcm.edu	hg19	16	11214572	11214670	+	Frame_Shift_Del	DEL	TGATGTGTCCAGGCTTGGCTGGGGAGTGGTCAAGTTTGCAGGCCTATTGCAGGTAAGATGGCCAGGAGCTCTGGGATCTGTTCTCAGTTGGCTACAAAC	TGATGTGTCCAGGCTTGGCTGGGGAGTGGTCAAGTTTGCAGGCCTATTGCAGGTAAGATGGCCAGGAGCTCTGGGATCTGTTCTCAGTTGGCTACAAAC	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	TGATGTGTCCAGGCTTGGCTGGGGAGTGGTCAAGTTTGCAGGCCTATTGCAGGTAAGATGGCCAGGAGCTCTGGGATCTGTTCTCAGTTGGCTACAAAC	TGATGTGTCCAGGCTTGGCTGGGGAGTGGTCAAGTTTGCAGGCCTATTGCAGGTAAGATGGCCAGGAGCTCTGGGATCTGTTCTCAGTTGGCTACAAAC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	CLEC16A	NM_015226	exon19	c.2216_2268del	p.739_756del	.	.	48.0	10.0	42.0	0.0	.	101	.	.	Pindel
LRFN1	57622	hgsc.bcm.edu	hg19	19	39805727	39805729	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-DD-AA3A-01A-11D-A36X-10	TCGA-DD-AA3A-10A-01D-A370-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	a17ef437-5859-4b97-b7a4-dfb5d1d1e83e	fa7c6f30-8c06-492f-b010-88d415e47d00	.	LRFN1	NM_020862	exon1	c.249_251del	p.83_84del	.	.	58.0	12.0	56.0	0.0	.	59	.	.	Pindel