Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TNFRSF25 8718 hgsc.bcm.edu hg19 1 6524732 6524732 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TNFRSF25 NM_148966 exon4 c.T343A p.C115S AGCCACAGCGGGT . 69.0 21.0 94.0 0.0 . 22 . . Atlas-SNP TNFRSF8 943 hgsc.bcm.edu hg19 1 12183820 12183820 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TNFRSF8 NM_001243 exon10 c.G1089A p.T363T TAAGACGCTGCCC . 77.0 31.0 114.0 0.0 . 70 . . Atlas-SNP CLCNKA 1187 hgsc.bcm.edu hg19 1 16358337 16358337 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CLCNKA NM_004070 exon16 c.A1755T p.T585T GAGCACAGGTGCC . 84.0 63.0 129.0 0.0 . 56 . . Atlas-SNP LAPTM5 7805 hgsc.bcm.edu hg19 1 31210494 31210494 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LAPTM5 NM_006762 exon6 c.T563A p.M188K ATGATCATCATCT . 46.0 21.0 86.0 0.0 . 30 . . Atlas-SNP MACF1 23499 hgsc.bcm.edu hg19 1 39823516 39823516 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MACF1 NM_012090 exon41 c.A5708T p.K1903M TAGTAAAGGACAA . 46.0 18.0 66.0 0.0 . 909 . . Atlas-SNP GLIS1 148979 hgsc.bcm.edu hg19 1 53995547 53995547 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GLIS1 NM_147193 exon4 c.T874A p.Y292N ACAGGTACGGCTT . 36.0 17.0 50.0 0.0 . 52 . . Atlas-SNP C8B 732 hgsc.bcm.edu hg19 1 57411614 57411614 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C8B NM_000066 exon7 c.A985T p.S329C CGTAGCTGTACTC . 96.0 28.0 162.0 0.0 . 107 . . Atlas-SNP UBE2U 148581 hgsc.bcm.edu hg19 1 64676461 64676461 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . UBE2U NM_152489 exon4 c.T278A p.L93X ACTTTTTGGACAA . 264.0 97.0 414.0 0.0 . 16 . . Atlas-SNP C1orf173 127254 hgsc.bcm.edu hg19 1 75038865 75038865 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C1orf173 NM_001002912 exon14 c.A2529T p.A843A TGCTTCTGCTGCT . 40.0 22.0 81.0 0.0 . 380 . . Atlas-SNP ZZZ3 26009 hgsc.bcm.edu hg19 1 78098739 78098739 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZZZ3 NM_015534 exon5 c.A301T p.I101L TTTCTATAGCCTG . 53.0 16.0 77.0 0.0 . 80 . . Atlas-SNP PTGFR 5737 hgsc.bcm.edu hg19 1 78958823 78958823 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTGFR NM_000959 exon2 c.A395T p.E132V CCATTGAGCGGTG . 89.0 29.0 137.0 0.0 . 121 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94508911 94508911 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ABCA4 NM_000350 exon21 c.A3171T p.E1057D AGCCTCTTCATTC . 49.0 24.0 66.0 0.0 . 275 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94577058 94577058 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ABCA4 NM_000350 exon3 c.C238A p.P80T AACAGGGATTGTT . 75.0 31.0 156.0 0.0 . 275 . . Atlas-SNP KCNA2 3737 hgsc.bcm.edu hg19 1 111146551 111146551 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KCNA2 NM_001204269 exon3 c.A854T p.Q285L GCCTGCTGGCCTT . 71.0 30.0 95.0 0.0 . 61 . . Atlas-SNP CD101 9398 hgsc.bcm.edu hg19 1 117556032 117556032 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CD101 NM_001256109 exon4 c.A846T p.K282N AGTGAAAGATTTT . 52.0 21.0 73.0 0.0 . 95 . . Atlas-SNP PDE4DIP 9659 hgsc.bcm.edu hg19 1 144868114 144868114 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 PDE4DIP,pharynx,carcinoma,0,1 PDE4DIP NM_014644 exon33 c.C5325A p.A1775A AGAGTCGGCTTCC . 194.0 18.0 154.0 0.0 . 817 . . Atlas-SNP ANKRD35 148741 hgsc.bcm.edu hg19 1 145555806 145555806 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANKRD35 NM_144698 exon2 c.T154A p.S52T CTTGACTCGAATG . 263.0 68.0 143.0 0.0 . 96 . . Atlas-SNP GJA5 2702 hgsc.bcm.edu hg19 1 147231300 147231300 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GJA5 NM_005266 exon2 c.A47T p.K16M GAGTGCTTGTGTA . 113.0 13.0 73.0 0.0 . 64 . . Atlas-SNP PLEKHO1 51177 hgsc.bcm.edu hg19 1 150123217 150123217 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PLEKHO1 NM_016274 exon2 c.A146T p.K49I TGCTGAAAGGGGA . 444.0 45.0 244.0 0.0 . 37 . . Atlas-SNP HORMAD1 84072 hgsc.bcm.edu hg19 1 150686584 150686584 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HORMAD1 NM_001199829 exon5 c.T256A p.Y86N CATCATAACATCC . 905.0 222.0 531.0 0.0 . 59 . . Atlas-SNP ANXA9 8416 hgsc.bcm.edu hg19 1 150956829 150956829 + Missense_Mutation SNP A A T rs7536645 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANXA9 NM_003568 exon6 c.A340T p.T114S CAGCCCACAGCCC . 174.0 24.0 106.0 0.0 . 28 . A|0.978;G|0.022 Atlas-SNP ANXA9 8416 hgsc.bcm.edu hg19 1 150957133 150957133 + Missense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANXA9 NM_003568 exon7 c.C453G p.C151W GGAGTGCCTGGCA . 103.0 15.0 47.0 0.0 . 28 . . Atlas-SNP PRUNE 58497 hgsc.bcm.edu hg19 1 151006513 151006513 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRUNE NM_021222 exon8 c.A1165T p.R389W TTGGACAGGGCAA . 258.0 27.0 171.0 0.0 . 40 . . Atlas-SNP PI4KB 5298 hgsc.bcm.edu hg19 1 151278812 151278812 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PI4KB NM_002651 exon6 c.C1246T p.L416F ATTCAAGGACTTC . 252.0 35.0 113.0 0.0 . 76 . . Atlas-SNP HRNR 388697 hgsc.bcm.edu hg19 1 152191860 152191860 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HRNR NM_001009931 exon3 c.T2245A p.S749T TGGAAGACAAACC . 166.0 19.0 79.0 0.0 . 403 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152283807 152283807 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FLG NM_002016 exon3 c.A3555T p.V1185V TCTATCTACCGAT . 195.0 21.0 123.0 0.0 . 900 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152285144 152285144 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FLG NM_002016 exon3 c.C2218G p.R740G ACCCTCGGTGTCC . 124.0 14.0 86.0 0.0 . 900 . . Atlas-SNP S100A3 6274 hgsc.bcm.edu hg19 1 153520241 153520241 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . S100A3 NM_002960 exon3 c.T223A p.Y75N GCACATACTCCAC . 225.0 39.0 131.0 0.0 . 7 . . Atlas-SNP TPM3 7170 hgsc.bcm.edu hg19 1 154130187 154130187 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TPM3 NM_153649 exon8 c.A675G p.K225K GGTGCATTTCAGT . 58.0 14.0 44.0 0.0 . 46 . . Atlas-SNP UBAP2L 9898 hgsc.bcm.edu hg19 1 154226401 154226401 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . UBAP2L NM_001127320 exon15 c.A1690T p.N564Y TCATCTAACCAGA . 183.0 46.0 101.0 0.0 . 197 . . Atlas-SNP TDRD10 126668 hgsc.bcm.edu hg19 1 154517399 154517399 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TDRD10 NM_182499 exon11 c.T926A p.L309Q CACCCCTGACTCA . 119.0 14.0 80.0 0.0 . 48 . . Atlas-SNP ADAR 103 hgsc.bcm.edu hg19 1 154561139 154561139 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADAR NM_001111 exon10 c.A2773T p.S925C ACTCACTGTAGAG . 154.0 20.0 94.0 0.0 . 113 . . Atlas-SNP ASH1L 55870 hgsc.bcm.edu hg19 1 155450303 155450303 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ASH1L NM_018489 exon3 c.A2358T p.T786T TGGAGCTGTGGAT . 327.0 35.0 208.0 0.0 . 279 . . Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156517962 156517962 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IQGAP3 NM_178229 exon19 c.A2207T p.Q736L TGGAGCTGGATAA . 188.0 33.0 92.0 0.0 . 146 . . Atlas-SNP BCAN 63827 hgsc.bcm.edu hg19 1 156617431 156617431 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BCAN NM_198427 exon4 c.T598A p.Y200N GGGGGCTATGAGC . 51.0 6.0 28.0 0.0 . 174 . . Atlas-SNP ARHGEF11 9826 hgsc.bcm.edu hg19 1 156939079 156939079 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARHGEF11 NM_198236 exon10 c.A820T p.S274C CCTCACTGAGGGA . 179.0 18.0 105.0 0.0 . 168 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157804379 157804379 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CD5L NM_005894 exon4 c.T536A p.L179Q CATCCCAGCTGCC . 121.0 42.0 47.0 0.0 . 112 . . Atlas-SNP OR6P1 128366 hgsc.bcm.edu hg19 1 158532685 158532685 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR6P1 NM_001160325 exon1 c.C710T p.A237V GAAAAGGCTTTGT . 187.0 58.0 82.0 0.0 . 47 . . Atlas-SNP FCRLB 127943 hgsc.bcm.edu hg19 1 161693276 161693276 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FCRLB NM_001002901 exon3 c.A172T p.S58C CCCATCAGCACTC . 283.0 40.0 153.0 0.0 . 35 . . Atlas-SNP ILDR2 387597 hgsc.bcm.edu hg19 1 166927035 166927035 + Missense_Mutation SNP T T A rs138041277 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ILDR2 NM_199351 exon2 c.A350T p.Y117F CCCCTGTAGAAAT . 172.0 24.0 101.0 0.0 . 79 . T|1.000;C|0.000 Atlas-SNP NME7 29922 hgsc.bcm.edu hg19 1 169200018 169200018 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NME7 NM_013330 exon10 c.A928G p.M310V TCTCCATTGCTAC . 949.0 117.0 455.0 0.0 . 34 . . Atlas-SNP MROH9 80133 hgsc.bcm.edu hg19 1 170916672 170916672 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_025063 exon3 c.T30A p.S10R AGAGAGTAGTCTC . 190.0 35.0 104.0 0.0 . . . . Atlas-SNP PIGC 5279 hgsc.bcm.edu hg19 1 172411330 172411330 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PIGC NM_153747 exon2 c.A433T p.S145C CAGTGCTGACAGA . 252.0 38.0 153.0 0.0 . 24 . . Atlas-SNP RC3H1 149041 hgsc.bcm.edu hg19 1 173934198 173934198 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RC3H1 NM_172071 exon9 c.A1395T p.Q465H ATTAAGTTGACCC . 230.0 27.0 111.0 0.0 . 110 . . Atlas-SNP NPHS2 7827 hgsc.bcm.edu hg19 1 179530443 179530443 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NPHS2 NM_014625 exon3 c.T432A p.P144P TCTTCCAGGAAGC . 489.0 74.0 245.0 0.0 . 46 . . Atlas-SNP RGSL1 353299 hgsc.bcm.edu hg19 1 182443327 182443327 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RGSL1 NM_001137669 exon6 c.A1081T p.I361F AAGGCCATCAAGC . 282.0 33.0 154.0 0.0 . 111 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182836162 182836162 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DHX9 NM_001357 exon14 c.A1541T p.H514L AAATACATGAAAG . 169.0 23.0 68.0 0.0 . 114 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186034407 186034407 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HMCN1 NM_031935 exon49 c.G7551T p.G2517G AGATGGGCAGCCC . 131.0 24.0 60.0 0.0 . 797 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186275482 186275482 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRG4 NM_005807 exon7 c.A631C p.K211Q AAAAAGAAACCTA . 245.0 32.0 142.0 0.0 . 259 . . Atlas-SNP PTGS2 5743 hgsc.bcm.edu hg19 1 186644523 186644523 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTGS2 NM_000963 exon9 c.T1263A p.A421A ACCACCAGCAACC . 280.0 34.0 115.0 0.0 . 144 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190068155 190068155 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAM5C NM_199051 exon8 c.C1294A p.Q432K CCACCTGGTCATT . 257.0 37.0 180.0 0.0 . 343 . . Atlas-SNP RGS2 5997 hgsc.bcm.edu hg19 1 192778220 192778220 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RGS2 NM_002923 exon1 c.T19A p.L7M ATGTTCTTGGCTG . 798.0 117.0 430.0 0.0 . 19 . . Atlas-SNP ZBTB41 360023 hgsc.bcm.edu hg19 1 197169358 197169358 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZBTB41 NM_194314 exon1 c.G246T p.Q82H TTGCTTCTGCCTA . 150.0 14.0 68.0 0.0 . 116 . . Atlas-SNP CRB1 23418 hgsc.bcm.edu hg19 1 197403940 197403940 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CRB1 NM_201253 exon9 c.A2947T p.R983W AGAACAAGGGATG . 329.0 56.0 195.0 0.0 . 284 . . Atlas-SNP CAMSAP2 23271 hgsc.bcm.edu hg19 1 200818090 200818090 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_203459 exon11 c.A2193T p.P731P AATTCCAGAAGAA . 370.0 57.0 190.0 0.0 . . . . Atlas-SNP NFASC 23114 hgsc.bcm.edu hg19 1 204945893 204945893 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 NFASC_ENST00000403080,caecum,carcinoma,0,3 NFASC NM_015090 exon16 c.G1834T p.D612Y GACCAAGACCTGG . 194.0 35.0 99.0 0.0 . 396 . . Atlas-SNP LEMD1 93273 hgsc.bcm.edu hg19 1 205353472 205353472 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LEMD1 NM_001199050 exon5 c.T291A p.T97T GCGTTTAGTGGTG . 192.0 31.0 94.0 0.0 . 21 . . Atlas-SNP SLC26A9 115019 hgsc.bcm.edu hg19 1 205898402 205898402 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC26A9 NM_134325 exon7 c.T800A p.V267E ACCAGCACCAGGA . 222.0 130.0 134.0 0.0 . 176 . . Atlas-SNP CR1 1378 hgsc.bcm.edu hg19 1 207753643 207753643 + Missense_Mutation SNP C C G rs141954836 bycluster;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CR1 NM_000651 exon30 c.C4995G p.N1665K GGACAACTTTTCA . 268.0 36.0 152.0 0.0 . 354 . C|0.999;A|0.001 Atlas-SNP VASH2 79805 hgsc.bcm.edu hg19 1 213146157 213146157 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . VASH2 NM_024749 exon4 c.A601G p.K201E GTCAAGAAGGTCA . 142.0 10.0 99.0 0.0 . 55 . . Atlas-SNP KCNK2 3776 hgsc.bcm.edu hg19 1 215408460 215408460 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KCNK2 NM_001017425 exon7 c.A1253G p.E418G GTGAAGAGATTGC . 76.0 6.0 42.0 0.0 . 135 . . Atlas-SNP BPNT1 10380 hgsc.bcm.edu hg19 1 220253130 220253130 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BPNT1 NM_006085 exon2 c.A59T p.Q20L GCCTTTTGAGCAA . 240.0 21.0 132.0 0.0 . 29 . . Atlas-SNP MIA3 375056 hgsc.bcm.edu hg19 1 222801852 222801852 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MIA3 NM_198551 exon4 c.A1290T p.S430S ACAGTCAGCAACA . 578.0 78.0 298.0 0.0 . 167 . . Atlas-SNP WNT3A 89780 hgsc.bcm.edu hg19 1 228246857 228246857 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WNT3A NM_033131 exon4 c.C750T p.R250R GTCCCGCGGCTGG . 187.0 17.0 117.0 0.0 . 40 . . Atlas-SNP GJC2 57165 hgsc.bcm.edu hg19 1 228345591 228345591 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GJC2 NM_020435 exon2 c.G132C p.E44D CGGCGAGGCCATC . 434.0 53.0 255.0 0.0 . 20 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228521428 228521428 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OBSCN NM_001271223 exon70 c.A18872T p.Y6291F CAGCCTATATCAG . 127.0 17.0 89.0 0.0 . 2142 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228552712 228552712 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OBSCN NM_001271223 exon92 c.T21743A p.L7248H CCCTCCTCCACGA . 574.0 70.0 321.0 0.0 . 2142 . . Atlas-SNP TRIM67 440730 hgsc.bcm.edu hg19 1 231299389 231299389 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRIM67 NM_001004342 exon1 c.A674T p.Q225L GCGAGCAGTGCGA . 68.0 10.0 39.0 0.0 . 160 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237551411 237551411 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RYR2 NM_001035 exon10 c.T701A p.L234H ATGTCCTCAGGTT . 153.0 18.0 80.0 0.0 . 1273 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237823356 237823356 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RYR2 NM_001035 exon55 c.T8280A p.Y2760X GCCATATAAGCTA . 173.0 21.0 90.0 0.0 . 1273 . . Atlas-SNP WDR64 128025 hgsc.bcm.edu hg19 1 241904820 241904820 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WDR64 NM_144625 exon11 c.T1294A p.S432T CCAGGATCTAGTG . 120.0 26.0 66.0 0.0 . 234 . . Atlas-SNP OR2L2 26246 hgsc.bcm.edu hg19 1 248202345 248202345 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR2L2 NM_001004686 exon1 c.T776A p.V259E CCTATGTACGTCC . 187.0 25.0 90.0 0.0 . 115 . . Atlas-SNP OR2M7 391196 hgsc.bcm.edu hg19 1 248487043 248487043 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR2M7 NM_001004691 exon1 c.A828G p.V276V GTAGAATACAGAC . 267.0 35.0 147.0 0.0 . 84 . . Atlas-SNP OR14I1 401994 hgsc.bcm.edu hg19 1 248845007 248845007 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR14I1 NM_001004734 exon1 c.T599A p.L200Q GAGCTCAGGGCCA . 274.0 31.0 158.0 0.0 . 64 . . Atlas-SNP TSSC1 7260 hgsc.bcm.edu hg19 2 3358335 3358335 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TSSC1 NM_003310 exon2 c.A112T p.K38X CATATTTAAGAGA . 209.0 59.0 273.0 0.0 . 39 . . Atlas-SNP MATN3 4148 hgsc.bcm.edu hg19 2 20212202 20212202 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MATN3 NM_002381 exon1 c.G191A p.G64E CTGGTCCCGGAAG . 176.0 116.0 227.0 0.0 . 28 . . Atlas-SNP RHOB 388 hgsc.bcm.edu hg19 2 20647467 20647467 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RHOB NM_004040 exon1 c.C241T p.L81F GTCATTCTCATGT . 151.0 36.0 166.0 0.0 . 18 . . Atlas-SNP ATRAID 51374 hgsc.bcm.edu hg19 2 27438566 27438566 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_080592 exon5 c.A597T p.I199I TTATATAGACAAC . 138.0 42.0 172.0 0.0 . . . . Atlas-SNP CAPN13 92291 hgsc.bcm.edu hg19 2 30966407 30966407 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CAPN13 NM_144575 exon13 c.G1287A p.S429S TCTGAACGAGGAA . 91.0 25.0 99.0 0.0 . 70 . . Atlas-SNP XDH 7498 hgsc.bcm.edu hg19 2 31606664 31606664 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . XDH NM_000379 exon10 c.A843T p.P281P CCAGGCTGGGCAG . 85.0 32.0 98.0 0.0 . 191 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32661167 32661167 + Silent SNP A A T rs188040071 bycluster;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BIRC6 NM_016252 exon15 c.A3546T p.L1182L CATTCTATGTGGG . 82.0 25.0 82.0 0.0 . 838 . A|1.000;G|0.000 Atlas-SNP TTC27 55622 hgsc.bcm.edu hg19 2 32858993 32858993 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TTC27 NM_017735 exon3 c.A317T p.Q106L TTGTTCAGAGCAA . 71.0 17.0 97.0 0.0 . 71 . . Atlas-SNP KCNG3 170850 hgsc.bcm.edu hg19 2 42720359 42720359 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KCNG3 NM_172344 exon1 c.T283A p.Y95N CGTTGTAGAAGGA . 45.0 13.0 82.0 0.0 . 19 . . Atlas-SNP SPTBN1 6711 hgsc.bcm.edu hg19 2 54891657 54891657 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SPTBN1 NM_003128 exon33 c.A6488T p.E2163V CTAAAGAGTCCAG . 135.0 39.0 123.0 0.0 . 378 . . Atlas-SNP GFPT1 2673 hgsc.bcm.edu hg19 2 69585596 69585596 + Splice_Site SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GFPT1 NM_002056 exon7 c.409-1G>A . GCTTTCCTGTAAG . 30.0 9.0 56.0 0.0 . 38 . . Atlas-SNP ZNF638 27332 hgsc.bcm.edu hg19 2 71661921 71661921 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF638 NM_014497 exon28 c.A5921T p.E1974V CTGAAGAAAGAAG . 373.0 91.0 473.0 0.0 . 179 . . Atlas-SNP M1AP 130951 hgsc.bcm.edu hg19 2 74867347 74867347 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_138804 exon2 c.A56T p.Q19L GGTTGCTGGTCAA . 110.0 23.0 167.0 0.0 . . . . Atlas-SNP POLR1A 25885 hgsc.bcm.edu hg19 2 86305011 86305011 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POLR1A NM_015425 exon11 c.A1351T p.I451F TGTTGATGTACAT . 37.0 7.0 52.0 0.0 . 137 . . Atlas-SNP CNGA3 1261 hgsc.bcm.edu hg19 2 99006230 99006230 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CNGA3 NM_001298 exon6 c.A559C p.I187L CTGCTTATTTGCA . 51.0 14.0 78.0 0.0 . 118 . . Atlas-SNP IL18RAP 8807 hgsc.bcm.edu hg19 2 103061692 103061692 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IL18RAP NM_003853 exon9 c.A964T p.I322F AATATCATCTTGG . 112.0 26.0 119.0 0.0 . 102 . . Atlas-SNP SLC9A4 389015 hgsc.bcm.edu hg19 2 103148873 103148873 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC9A4 NM_001011552 exon12 c.A2123T p.Q708L AGGCACAAGAAAT . 86.0 20.0 118.0 0.0 . 115 . . Atlas-SNP RANBP2 5903 hgsc.bcm.edu hg19 2 109347864 109347864 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RANBP2 NM_006267 exon4 c.A339T p.R113S TGGAAGAGCAAAA . 764.0 185.0 909.0 0.0 . 488 . . Atlas-SNP SH3RF3 344558 hgsc.bcm.edu hg19 2 109964388 109964388 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SH3RF3 NM_001099289 exon2 c.T832A p.C278S AAGGACTGTCTGA . 68.0 12.0 100.0 0.0 . 62 . . Atlas-SNP PAX8 7849 hgsc.bcm.edu hg19 2 114004421 114004421 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PAX8 NM_013952 exon3 c.T101A p.I34N TCTACGATGCGCT . 126.0 29.0 139.0 0.0 . 42 . . Atlas-SNP IWS1 55677 hgsc.bcm.edu hg19 2 128249661 128249661 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IWS1 NM_017969 exon10 c.C1933T p.P645S CACTAGGCAGCTG . 97.0 24.0 102.0 0.0 . 61 . . Atlas-SNP SAP130 79595 hgsc.bcm.edu hg19 2 128747139 128747139 + Silent SNP T T A rs372682996 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SAP130 NM_001145928 exon13 c.A1857T p.S619S ATTACCTGAAGTC . 101.0 33.0 134.0 0.0 . 169 . . Atlas-SNP MCM6 4175 hgsc.bcm.edu hg19 2 136609093 136609093 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MCM6 NM_005915 exon13 c.A1796T p.K599I AGATGTTTATATT . 42.0 10.0 61.0 0.0 . 64 . . Atlas-SNP NOSTRIN 115677 hgsc.bcm.edu hg19 2 169688005 169688005 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NOSTRIN NM_001039724 exon6 c.A366T p.T122T AAAGACAGCAAAT . 238.0 53.0 253.0 0.0 . 68 . . Atlas-SNP BBS5 129880 hgsc.bcm.edu hg19 2 170355994 170355994 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BBS5 NM_152384 exon9 c.682-2A>T . TCTTGTAGAGTGG . 186.0 59.0 214.0 0.0 . 27 . . Atlas-SNP DCAF17 80067 hgsc.bcm.edu hg19 2 172300031 172300031 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DCAF17 NM_025000 exon3 c.231-2A>T . TTTCCCAGTGTTG . 41.0 12.0 41.0 0.0 . 41 . . Atlas-SNP WIPF1 7456 hgsc.bcm.edu hg19 2 175432711 175432711 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WIPF1 NM_003387 exon6 c.T1220A p.V407E CTGTCTACTCCAC . 64.0 20.0 101.0 0.0 . 88 . . Atlas-SNP ATF2 1386 hgsc.bcm.edu hg19 2 175939359 175939359 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATF2 NM_001880 exon14 c.A1496T p.Q499L TGTGACTGGGAGG . 112.0 29.0 102.0 0.0 . 52 . . Atlas-SNP NFE2L2 4780 hgsc.bcm.edu hg19 2 178098800 178098800 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 NFE2L2,NS,carcinoma,+1,7 NFE2L2 NM_006164 exon2 c.A245G p.E82G AGAAATTCACCTG . 56.0 28.0 67.0 0.0 . 225 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179417476 179417476 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TTN NM_001267550 exon335 c.T90151A p.W30051R TGGTCCAGCTGAG . 119.0 39.0 130.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179439715 179439715 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TTN NM_001267550 exon326 c.T71144A p.V23715D TCACCAACCTCTC . 108.0 39.0 90.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179575489 179575489 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TTN NM_001267550 exon98 c.T28335A p.I9445I ATAACTAATCTGG . 90.0 24.0 97.0 0.0 . 18412 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179612800 179612800 + Nonsense_Mutation SNP A A T rs142132973 bycluster;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 TTN_ENST00000360870,NS,lymphoid_neoplasm,0,1 TTN NM_133379 exon46 c.T14327A p.L4776X ACCCCTAAAGGCT . 82.0 23.0 77.0 0.0 . 18412 . A|0.999;G|0.001 Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187605125 187605125 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAM171B NM_177454 exon2 c.A409G p.I137V TTAACTATTATTG . 159.0 35.0 179.0 0.0 . 146 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189870090 189870090 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . COL3A1 NM_000090 exon41 c.A2946T p.K982N TGGGAAACCAGGA . 105.0 24.0 117.0 0.0 . 292 . . Atlas-SNP FZD7 8324 hgsc.bcm.edu hg19 2 202900427 202900427 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FZD7 NM_003507 exon1 c.T1057A p.W353R TCCATCTGGTGGG . 98.0 26.0 84.0 0.0 . 70 . . Atlas-SNP FZD7 8324 hgsc.bcm.edu hg19 2 202900508 202900508 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FZD7 NM_003507 exon1 c.T1138A p.Y380N TCGCAGTACTTCC . 70.0 12.0 85.0 0.0 . 70 . . Atlas-SNP ICOS 29851 hgsc.bcm.edu hg19 2 204820588 204820588 + Silent SNP A A G rs372256111 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ICOS NM_012092 exon2 c.A288G p.L96L TTTTCTATACAAC . 168.0 48.0 171.0 0.0 . 20 . . Atlas-SNP ADAM23 8745 hgsc.bcm.edu hg19 2 207436449 207436449 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADAM23 NM_003812 exon17 c.1567-2A>T . TTCTCTAGGAATG . 55.0 17.0 86.0 0.0 . 239 . . Atlas-SNP MAP2 4133 hgsc.bcm.edu hg19 2 210559831 210559831 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MAP2 NM_002374 exon7 c.A2937T p.K979N CAAGAAAACTGAA . 305.0 82.0 335.0 0.0 . 372 . . Atlas-SNP VWC2L 402117 hgsc.bcm.edu hg19 2 215440464 215440464 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . VWC2L NM_001080500 exon4 c.A589T p.I197F TGTAACATCTGTC . 97.0 31.0 122.0 0.0 . 40 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230638852 230638852 + Silent SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRIP12 NM_004238 exon37 c.T5430C p.D1810D TGGTATATCCTTC . 87.0 26.0 86.0 0.0 . 207 . . Atlas-SNP ALPP 250 hgsc.bcm.edu hg19 2 233244624 233244624 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ALPP NM_001632 exon5 c.T635A p.L212H CGCAGCTCATCTC . 180.0 50.0 249.0 0.0 . 53 . . Atlas-SNP PDCD6IP 10015 hgsc.bcm.edu hg19 3 33840379 33840379 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDCD6IP NM_013374 exon1 c.A159T p.A53A CGCCGCAGTCGGT . 135.0 40.0 144.0 0.0 . 62 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266103 41266103 + Missense_Mutation SNP G G C rs121913399 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 CTNNB1,gallbladder,other,-1,1 CTNNB1 NM_001098209 exon3 c.G100C p.G34R GACTCTGGAATCC . 126.0 42.0 151.0 0.0 . 4904 . . Atlas-SNP HHATL 57467 hgsc.bcm.edu hg19 3 42735312 42735312 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HHATL NM_020707 exon11 c.1047-2A>T . CATATCTGCAGGA . 76.0 23.0 76.0 0.0 . 49 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42751273 42751273 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CCDC13 NM_144719 exon15 c.A1891T p.N631Y GCCTGTTGTTAGA . 88.0 23.0 94.0 0.0 . 71 . . Atlas-SNP ZNF197 10168 hgsc.bcm.edu hg19 3 44685446 44685446 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF197 NM_006991 exon6 c.A2824T p.K942X ACTTCTAAGAGGA . 190.0 52.0 208.0 0.0 . 81 . . Atlas-SNP PLXNB1 5364 hgsc.bcm.edu hg19 3 48455080 48455080 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PLXNB1 NM_001130082 exon23 c.A4534T p.R1512W CCCACCTGTACAT . 89.0 28.0 100.0 0.0 . 150 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48685300 48685300 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CELSR3 NM_001407 exon20 c.A7103T p.Q2368L GGGGACTGGGAAG . 38.0 9.0 34.0 0.0 . 237 . . Atlas-SNP ARIH2 10425 hgsc.bcm.edu hg19 3 49006053 49006053 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARIH2 NM_006321 exon7 c.A625C p.K209Q AGAGAGAAATACA . 51.0 12.0 67.0 0.0 . 32 . . Atlas-SNP QRICH1 54870 hgsc.bcm.edu hg19 3 49070097 49070097 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . QRICH1 NM_198880 exon8 c.C2005T p.R669W AGTACCGGATACT . 73.0 5.0 79.0 0.0 . 48 . . Atlas-SNP DAG1 1605 hgsc.bcm.edu hg19 3 49570032 49570032 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DAG1 NM_001177642 exon4 c.A2088T p.L696L CGCCCTAGAGCCT . 94.0 23.0 86.0 0.0 . 60 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51264732 51264732 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DOCK3 NM_004947 exon16 c.T1396A p.S466T TTGGGTTCAGGAG . 55.0 18.0 80.0 0.0 . 397 . . Atlas-SNP TKT 7086 hgsc.bcm.edu hg19 3 53263101 53263101 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TKT NM_001258028 exon11 c.A1341T p.S447S GGGGACTGACCGA . 95.0 20.0 115.0 0.0 . 38 . . Atlas-SNP FLNB 2317 hgsc.bcm.edu hg19 3 58112352 58112352 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FLNB NM_001457 exon24 c.G4085T p.G1362V GGCTTGGCATAAC . 170.0 89.0 182.0 0.0 . 430 . . Atlas-SNP ATXN7 6314 hgsc.bcm.edu hg19 3 63973873 63973873 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATXN7 NM_000333 exon9 c.A1234T p.R412W CCTCTCAGGGACC . 145.0 39.0 177.0 0.0 . 126 . . Atlas-SNP MINA 84864 hgsc.bcm.edu hg19 3 97686360 97686360 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MINA NM_001261829 exon2 c.A78T p.A26A CCCAGCTGCTTCT . 67.0 13.0 58.0 0.0 . 39 . . Atlas-SNP OR5K2 402135 hgsc.bcm.edu hg19 3 98216964 98216964 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR5K2 NM_001004737 exon1 c.G440A p.G147D CCACAGGCGCCTT . 126.0 37.0 124.0 0.0 . 56 . . Atlas-SNP ALCAM 214 hgsc.bcm.edu hg19 3 105266289 105266289 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ALCAM NM_001627 exon11 c.A1296T p.T432T TAAAACAATAATC . 302.0 80.0 339.0 0.0 . 71 . . Atlas-SNP ATG3 64422 hgsc.bcm.edu hg19 3 112262916 112262916 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATG3 NM_022488 exon6 c.A381T p.T127T TTCCAGTGTGATC . 400.0 114.0 449.0 1.0 . 23 . . Atlas-SNP CCDC80 151887 hgsc.bcm.edu hg19 3 112357260 112357260 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CCDC80 NM_199511 exon2 c.A1493T p.Q498L TTGTCCTGGGCCT . 73.0 21.0 90.0 0.0 . 100 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121186434 121186434 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POLQ NM_199420 exon24 c.A6899T p.E2300V CTCTCCTCCATCT . 95.0 34.0 110.0 0.0 . 273 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121256056 121256056 + Splice_Site SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POLQ NM_199420 exon6 c.632-1G>C . CCATTCCTAAAAA . 195.0 99.0 222.0 0.0 . 273 . . Atlas-SNP CASR 846 hgsc.bcm.edu hg19 3 121981126 121981126 + Missense_Mutation SNP G G A rs193922421 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CASR NM_001178065 exon4 c.G1244A p.R415Q ATTTACGGATATC . 74.0 13.0 72.0 0.0 . 190 . . Atlas-SNP TPRA1 131601 hgsc.bcm.edu hg19 3 127295719 127295719 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TPRA1 NM_001142646 exon5 c.C363T p.T121T GAAGCGGGTGATC . 191.0 41.0 245.0 0.0 . 21 . . Atlas-SNP KBTBD12 166348 hgsc.bcm.edu hg19 3 127703119 127703119 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KBTBD12 NM_207335 exon5 c.T1870A p.X624K GAGCACTAAGGTG . 86.0 24.0 107.0 0.0 . 41 . . Atlas-SNP KIAA1257 57501 hgsc.bcm.edu hg19 3 128696958 128696958 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KIAA1257 NM_020741 exon5 c.A738T p.R246S CTCTTCTCTGACA . 105.0 28.0 104.0 0.0 . 33 . . Atlas-SNP TMCC1 23023 hgsc.bcm.edu hg19 3 129373861 129373861 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMCC1 NM_001017395 exon5 c.A1597G p.M533V CTTCCATGCTTGC . 97.0 30.0 116.0 0.0 . 105 . . Atlas-SNP ARMC8 25852 hgsc.bcm.edu hg19 3 138007891 138007891 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARMC8 NM_015396 exon21 c.G1781T p.G594V AATAGGGCCATTC . 265.0 145.0 255.0 0.0 . 79 . . Atlas-SNP ESYT3 83850 hgsc.bcm.edu hg19 3 138180931 138180931 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ESYT3 NM_031913 exon8 c.T798A p.D266E CAGTGATGTGTCA . 43.0 11.0 63.0 0.0 . 64 . . Atlas-SNP SPSB4 92369 hgsc.bcm.edu hg19 3 140785482 140785482 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SPSB4 NM_080862 exon2 c.T536A p.V179E TGCTCGTGGTGCT . 98.0 17.0 137.0 0.0 . 19 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142188239 142188239 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATR NM_001184 exon38 c.A6492T p.I2164I TTTGGCTATTATT . 194.0 50.0 225.0 0.0 . 285 . . Atlas-SNP ATR 545 hgsc.bcm.edu hg19 3 142278251 142278251 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATR NM_001184 exon7 c.A1574T p.K525M TTCTTCTTGGATT . 117.0 31.0 155.0 0.0 . 285 . . Atlas-SNP CLRN1 7401 hgsc.bcm.edu hg19 3 150690482 150690482 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CLRN1 NM_001256819 exon1 c.A14T p.Q5L TTCTTCTGTTGGC . 81.0 21.0 82.0 0.0 . 44 . . Atlas-SNP OTOL1 131149 hgsc.bcm.edu hg19 3 161221107 161221107 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OTOL1 NM_001080440 exon4 c.A811T p.S271C GGAGACAGTGGAA . 299.0 81.0 331.0 0.0 . 63 . . Atlas-SNP MECOM 2122 hgsc.bcm.edu hg19 3 168834399 168834399 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MECOM NM_004991 exon8 c.A1261T p.N421Y GTTTATTTAAGGA . 117.0 41.0 140.0 0.0 . 216 . . Atlas-SNP PLD1 5337 hgsc.bcm.edu hg19 3 171443814 171443814 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PLD1 NM_002662 exon7 c.A659T p.K220M ATGCCCTTTGGTC . 84.0 21.0 82.0 0.0 . 134 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184290454 184290454 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 EPHB3,NS,carcinoma,0,1 EPHB3 NM_004443 exon3 c.T346A p.C116S CGTGACTGCAACA . 98.0 28.0 107.0 0.0 . 114 . . Atlas-SNP IGF2BP2 10644 hgsc.bcm.edu hg19 3 185390424 185390424 + Missense_Mutation SNP T T A rs368787882 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IGF2BP2 NM_006548 exon10 c.A1105T p.S369C GTGCGCTGAGGTT . 429.0 111.0 520.0 0.0 . 69 . . Atlas-SNP ETV5 2119 hgsc.bcm.edu hg19 3 185797835 185797835 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ETV5 NM_004454 exon7 c.C421G p.L141V GTGAGAGGGGGGT . 91.0 31.0 68.0 0.0 . 106 . . Atlas-SNP KNG1 3827 hgsc.bcm.edu hg19 3 186459911 186459911 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KNG1 NM_001102416 exon10 c.A1726G p.I576V CCTCCTATATCAC . 118.0 27.0 156.0 0.0 . 129 . . Atlas-SNP XXYLT1 152002 hgsc.bcm.edu hg19 3 194877312 194877312 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_152531 exon4 c.653-2A>T . GATCTCTGCGGGA . 46.0 11.0 83.0 0.0 . . . . Atlas-SNP RGS12 6002 hgsc.bcm.edu hg19 4 3424630 3424630 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RGS12 NM_002926 exon12 c.3034-2A>T . TTCCTCAGCCTCT . 24.0 11.0 51.0 0.0 . 128 . . Atlas-SNP STK32B 55351 hgsc.bcm.edu hg19 4 5500757 5500757 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 STK32B,mouth,carcinoma,0,1 STK32B NM_018401 exon12 c.G1192C p.G398R CAGGACGGGTGCA . 191.0 67.0 301.0 1.0 . 87 . . Atlas-SNP TBC1D14 57533 hgsc.bcm.edu hg19 4 6925360 6925360 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TBC1D14 NM_001113361 exon2 c.A244T p.S82C CCCTGCAGCGCGG . 82.0 39.0 171.0 0.0 . 110 . . Atlas-SNP LRRC66 339977 hgsc.bcm.edu hg19 4 52860981 52860981 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LRRC66 NM_001024611 exon4 c.A2207T p.Q736L TCGTCCTGCAGGG . 63.0 23.0 77.0 0.0 . 128 . . Atlas-SNP CENPC1 1060 hgsc.bcm.edu hg19 4 68357970 68357970 + Missense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CENPC1 NM_001812 exon16 c.G2443C p.G815R GTATACCTAGATT . 46.0 23.0 81.0 0.0 . 66 . . Atlas-SNP NPFFR2 10886 hgsc.bcm.edu hg19 4 72994540 72994540 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NPFFR2 NM_004885 exon2 c.A538G p.T180A ATGCACACAGTCA . 47.0 18.0 132.0 0.0 . 98 . . Atlas-SNP ADAMTS3 9508 hgsc.bcm.edu hg19 4 73181644 73181644 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADAMTS3 NM_014243 exon11 c.T1530A p.P510P ATTATCAGGATGG . 88.0 30.0 153.0 0.0 . 164 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79366793 79366793 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FRAS1 NM_001166133 exon42 c.A5783G p.H1928R CAACCCATGATAT . 52.0 20.0 103.0 0.0 . 779 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79455718 79455718 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FRAS1 NM_025074 exon71 c.A11041T p.T3681S CCCAATACATCTG . 42.0 17.0 75.0 0.0 . 779 . . Atlas-SNP PTPN13 5783 hgsc.bcm.edu hg19 4 87638220 87638220 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTPN13 NM_006264 exon9 c.T1335A p.G445G CAGTGGTCTCCCA . 48.0 22.0 78.0 0.0 . 203 . . Atlas-SNP CCSER1 401145 hgsc.bcm.edu hg19 4 92519745 92519745 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001145065 exon11 c.T2240A p.V747E GAATTGTGAGCCA . 118.0 48.0 175.0 0.0 . . . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104061192 104061192 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CENPE NM_001813 exon38 c.A5958T p.K1986N ATCTTCTTTCACT . 59.0 22.0 94.0 0.0 . 253 . . Atlas-SNP TACR3 6870 hgsc.bcm.edu hg19 4 104511135 104511135 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 TACR3,rectum,carcinoma,+1,1 TACR3 NM_001059 exon5 c.A1102T p.K368X CTCTCTTGAAGCC . 72.0 29.0 109.0 0.0 . 102 . . Atlas-SNP EGF 1950 hgsc.bcm.edu hg19 4 110915949 110915949 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EGF NM_001963 exon20 c.A2918C p.D973A ATAGTGACTCTGA . 54.0 16.0 70.0 0.0 . 113 . . Atlas-SNP PDE5A 8654 hgsc.bcm.edu hg19 4 120463621 120463621 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDE5A NM_001083 exon10 c.C1565A p.T522K TCCAATGTGACCA . 87.0 29.0 145.0 0.0 . 83 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123246433 123246433 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KIAA1109 NM_015312 exon63 c.A10953T p.A3651A GGATGCAGCATCT . 255.0 102.0 377.0 1.0 . 424 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126370737 126370737 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAT4 NM_024582 exon9 c.A8566T p.T2856S GTAAGTACAGATG . 75.0 25.0 106.0 0.0 . 1752 . . Atlas-SNP DCHS2 54798 hgsc.bcm.edu hg19 4 155156250 155156250 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DCHS2 NM_017639 exon25 c.A8189T p.Q2730L ACTGTCTGGGGTA . 64.0 28.0 94.0 0.0 . 594 . . Atlas-SNP ETFDH 2110 hgsc.bcm.edu hg19 4 159603531 159603531 + Missense_Mutation SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ETFDH NM_004453 exon3 c.T360G p.D120E CCTTGATCCAGGT . 56.0 16.0 80.0 0.0 . 57 . . Atlas-SNP DDX60L 91351 hgsc.bcm.edu hg19 4 169369824 169369824 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DDX60L NM_001012967 exon9 c.A1103G p.N368S GCTATATTCTTTA . 228.0 82.0 361.0 0.0 . 116 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13920675 13920675 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNAH5 NM_001369 exon6 c.A712G p.T238A AGTCCGTAGGTTC . 149.0 37.0 130.0 0.0 . 868 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13928204 13928204 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNAH5 NM_001369 exon3 c.A276T p.T92T GATACCTGTTTCT . 104.0 25.0 71.0 0.0 . 868 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13931352 13931352 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNAH5 NM_001369 exon2 c.A59T p.Q20L AGTCTTTGCTAAA . 94.0 21.0 95.0 0.0 . 868 . . Atlas-SNP FBXL7 23194 hgsc.bcm.edu hg19 5 15936796 15936796 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FBXL7 NM_012304 exon4 c.T977A p.I326N CCTCCATCAAGGA . 59.0 10.0 49.0 0.0 . 138 . . Atlas-SNP IL7R 3575 hgsc.bcm.edu hg19 5 35874564 35874564 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 .,1 IL7R NM_002185 exon6 c.T720A p.P240P GGATCCTATCTTA . 142.0 46.0 115.0 0.0 . 200 . . Atlas-SNP FYB 2533 hgsc.bcm.edu hg19 5 39130702 39130702 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FYB NM_001243093 exon10 c.T1860A p.S620R ACTTCCACTCTGA . 125.0 29.0 107.0 0.0 . 354 . . Atlas-SNP MROH2B 133558 hgsc.bcm.edu hg19 5 41048467 41048467 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_173489 exon16 c.T1643A p.L548Q TTCCATAGGTCTA . 131.0 28.0 128.0 0.0 . . . . Atlas-SNP CDC20B 166979 hgsc.bcm.edu hg19 5 54429246 54429246 + Missense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDC20B NM_001170402 exon6 c.G691C p.D231H AGTAGTCATTTCG . 97.0 16.0 77.0 0.0 . 61 . . Atlas-SNP CDC20B 166979 hgsc.bcm.edu hg19 5 54429259 54429259 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDC20B NM_001170402 exon6 c.T678A p.T226T AAGACCAGTAATA . 108.0 19.0 83.0 0.0 . 61 . . Atlas-SNP DEPDC1B 55789 hgsc.bcm.edu hg19 5 59899387 59899387 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DEPDC1B NM_001145208 exon9 c.A1073T p.Q358L AATGTCTGAACCA . 57.0 14.0 47.0 0.0 . 56 . . Atlas-SNP MARVELD2 153562 hgsc.bcm.edu hg19 5 68715848 68715848 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MARVELD2 NM_001244734 exon2 c.A636T p.T212T TGTCACAGCTTAC . 170.0 36.0 171.0 0.0 . 49 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71411599 71411599 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MAP1B NM_005909 exon2 c.T259A p.S87T CGACACTCTGCAA . 53.0 10.0 59.0 0.0 . 243 . . Atlas-SNP MAP1B 4131 hgsc.bcm.edu hg19 5 71491824 71491824 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MAP1B NM_005909 exon5 c.A2642T p.E881V AGAAGGAGAGAGA . 136.0 32.0 102.0 0.0 . 243 . . Atlas-SNP FAM169A 26049 hgsc.bcm.edu hg19 5 74101006 74101006 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAM169A NM_015566 exon7 c.A774T p.L258F TCTTTGTAATGCT . 82.0 12.0 68.0 0.0 . 61 . . Atlas-SNP MCTP1 79772 hgsc.bcm.edu hg19 5 94230454 94230454 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MCTP1 NM_024717 exon11 c.T1739A p.L580Q ACCAGCAGCACCA . 92.0 17.0 62.0 0.0 . 110 . . Atlas-SNP MCTP1 79772 hgsc.bcm.edu hg19 5 94353130 94353130 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MCTP1 NM_024717 exon2 c.T779A p.M260K TGGTACATTCCGG . 81.0 16.0 60.0 0.0 . 110 . . Atlas-SNP SLC25A46 91137 hgsc.bcm.edu hg19 5 110081977 110081977 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC25A46 NM_138773 exon4 c.A392T p.Y131F TTAATTACCATGC . 315.0 115.0 335.0 0.0 . 33 . . Atlas-SNP ACSL6 23305 hgsc.bcm.edu hg19 5 131323886 131323886 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ACSL6 NM_001009185 exon7 c.A686T p.Q229L GCCTTCTGAGGTT . 79.0 16.0 61.0 0.0 . 169 . . Atlas-SNP CATSPER3 347732 hgsc.bcm.edu hg19 5 134332053 134332053 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CATSPER3 NM_178019 exon3 c.A343T p.N115Y GGCTACAACCTGC . 64.0 9.0 53.0 0.0 . 38 . . Atlas-SNP HBEGF 1839 hgsc.bcm.edu hg19 5 139725617 139725617 + Silent SNP T T A rs375401691 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HBEGF NM_001945 exon2 c.A99T p.L33L AGCAGCTAGCCCT . 103.0 20.0 105.0 0.0 . 12 . . Atlas-SNP PCDHB3 56132 hgsc.bcm.edu hg19 5 140481325 140481325 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCDHB3 NM_018937 exon1 c.A1092T p.V364V GACTGTACTGGCT . 62.0 16.0 53.0 0.0 . 208 . . Atlas-SNP PCDHB6 56130 hgsc.bcm.edu hg19 5 140531957 140531957 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCDHB6 NM_018939 exon1 c.G2119T p.V707L CTGTTCGTGGCGG . 66.0 10.0 69.0 0.0 . 161 . . Atlas-SNP PCDHB7 56129 hgsc.bcm.edu hg19 5 140552882 140552882 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCDHB7 NM_018940 exon1 c.A466T p.S156C CTAGAGAGTGCAC . 132.0 24.0 105.0 0.0 . 231 . . Atlas-SNP PCDHB8 56128 hgsc.bcm.edu hg19 5 140559337 140559337 + Silent SNP C C T rs374710779 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 PCDHB8,NS,carcinoma,0,1 PCDHB8 NM_019120 exon1 c.C1722T p.T574T CTGCACCGAGCTG . 86.0 4.0 68.0 0.0 . 199 . . Atlas-SNP PCDHB11 56125 hgsc.bcm.edu hg19 5 140581442 140581442 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 PCDHB11,right_upper_lobe,carcinoma,0,1 PCDHB11 NM_018931 exon1 c.T2095A p.S699T GTGTCTTCGCTCT . 99.0 25.0 91.0 0.0 . 162 . . Atlas-SNP PCDHGA3 56112 hgsc.bcm.edu hg19 5 140726047 140726047 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCDHGA3 NM_032011 exon1 c.T2447C p.I816T CTTTGATTATTAA . 344.0 67.0 294.0 0.0 . 246 . . Atlas-SNP PCDHGC4 56098 hgsc.bcm.edu hg19 5 140865877 140865877 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCDHGC4 NM_018928 exon1 c.A1137T p.S379S AGACTCAGGGTCA . 146.0 32.0 115.0 0.0 . 91 . . Atlas-SNP ARSI 340075 hgsc.bcm.edu hg19 5 149676796 149676796 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARSI NM_001012301 exon2 c.T1691A p.L564Q GACATTAGCCTGG . 199.0 45.0 167.0 0.0 . 65 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150933925 150933925 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAT2 NM_001447 exon4 c.A3943T p.T1315S TCACCGTTAGGAT . 114.0 18.0 109.0 0.0 . 465 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153085377 153085377 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GRIA1 NM_001258021 exon11 c.A1603T p.K535X AAATCCAAGCCGG . 157.0 34.0 132.0 0.0 . 321 . . Atlas-SNP ATP10B 23120 hgsc.bcm.edu hg19 5 160071197 160071197 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATP10B NM_025153 exon9 c.A816T p.R272R GCAGCCTCGAAGC . 116.0 25.0 122.0 0.0 . 201 . . Atlas-SNP DOCK2 1794 hgsc.bcm.edu hg19 5 169174411 169174411 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DOCK2 NM_004946 exon23 c.G2279A p.G760D ATGAAGGCAAAGA . 99.0 23.0 119.0 0.0 . 389 . . Atlas-SNP STC2 8614 hgsc.bcm.edu hg19 5 172744922 172744922 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . STC2 NM_003714 exon4 c.T837A p.L279L AGCCCCAAGGCCC . 92.0 24.0 82.0 0.0 . 59 . . Atlas-SNP ADAMTS2 9509 hgsc.bcm.edu hg19 5 178541069 178541069 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADAMTS2 NM_014244 exon22 c.T3435A p.N1145K GGAGGCATTGAGA . 198.0 34.0 175.0 0.0 . 190 . . Atlas-SNP RUFY1 80230 hgsc.bcm.edu hg19 5 179016569 179016569 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RUFY1 NM_025158 exon9 c.T1049C p.I350T ACCGAATTTGCTC . 477.0 116.0 374.0 0.0 . 101 . . Atlas-SNP MGAT1 4245 hgsc.bcm.edu hg19 5 180219134 180219134 + Missense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MGAT1 NM_001114617 exon3 c.G838C p.E280Q TGGGCTCCAGCTC . 86.0 21.0 77.0 0.0 . 48 . . Atlas-SNP SCAND3 114821 hgsc.bcm.edu hg19 6 28540129 28540129 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SCAND3 NM_052923 exon4 c.T3537A p.S1179R ATGTTCACTGATA . 293.0 205.0 191.0 0.0 . 156 . . Atlas-SNP HLA-G 3135 hgsc.bcm.edu hg19 6 29797324 29797324 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HLA-G NM_002127 exon5 c.A749T p.Q250L AGACCCAGGACGT . 156.0 104.0 120.0 0.0 . 90 . . Atlas-SNP CDSN 1041 hgsc.bcm.edu hg19 6 31084505 31084505 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDSN NM_001264 exon2 c.A887T p.Y296F ACCTCGTAGCCAC . 67.0 50.0 37.0 0.0 . 48 . . Atlas-SNP XPO5 57510 hgsc.bcm.edu hg19 6 43526298 43526298 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . XPO5 NM_020750 exon12 c.A1252T p.S418C CACAGCTAGGGCT . 160.0 118.0 111.0 0.0 . 79 . . Atlas-SNP TMEM63B 55362 hgsc.bcm.edu hg19 6 44116248 44116248 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMEM63B NM_018426 exon14 c.1122-2A>T . CTTTCTAGCATCC . 78.0 14.0 63.0 0.0 . 77 . . Atlas-SNP TNFRSF21 27242 hgsc.bcm.edu hg19 6 47202430 47202430 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TNFRSF21 NM_014452 exon5 c.A1714T p.R572W CGTTCCTGCTCAG . 104.0 13.0 51.0 0.0 . 61 . . Atlas-SNP GPR111 222611 hgsc.bcm.edu hg19 6 47650129 47650129 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GPR111 NM_153839 exon7 c.T1630A p.L544M CCAGCTTTGGCCA . 138.0 26.0 97.0 0.0 . 123 . . Atlas-SNP CD109 135228 hgsc.bcm.edu hg19 6 74502490 74502490 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CD109 NM_133493 exon23 c.A2843C p.N948T CAGATAATTTGAA . 54.0 17.0 57.0 0.0 . 170 . . Atlas-SNP IBTK 25998 hgsc.bcm.edu hg19 6 82921267 82921267 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IBTK NM_015525 exon14 c.A2314T p.M772L ATTTCATGGTCAC . 292.0 104.0 479.0 0.0 . 128 . . Atlas-SNP ORC3 23595 hgsc.bcm.edu hg19 6 88375515 88375515 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ORC3 NM_181837 exon19 c.A1997C p.N666T ATGCAAATTCTGC . 51.0 21.0 105.0 0.0 . 51 . . Atlas-SNP TRDN 10345 hgsc.bcm.edu hg19 6 123851680 123851680 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRDN NM_001256022 exon5 c.A455T p.E152V GGTTTCTCTTGTT . 120.0 45.0 214.0 0.0 . 88 . . Atlas-SNP SOGA3 387104 hgsc.bcm.edu hg19 6 127837602 127837602 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001012279 exon2 c.C158A p.T53K GCGATTGTCTGTC . 16.0 7.0 25.0 0.0 . . . . Atlas-SNP AHI1 54806 hgsc.bcm.edu hg19 6 135644338 135644338 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . AHI1 NM_017651 exon24 c.A3290T p.Q1097L CCTTCCTGTCCCT . 69.0 25.0 108.0 0.0 . 81 . . Atlas-SNP SYNE1 23345 hgsc.bcm.edu hg19 6 152651184 152651184 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SYNE1 NM_182961 exon78 c.G14636T p.C4879F CTCTCACATTCTG . 65.0 18.0 69.0 0.0 . 3227 . . Atlas-SNP TIAM2 26230 hgsc.bcm.edu hg19 6 155458554 155458554 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TIAM2 NM_012454 exon4 c.A1438T p.T480S ACATCTACAGAAA . 106.0 37.0 116.0 0.0 . 161 . . Atlas-SNP LFNG 3955 hgsc.bcm.edu hg19 7 2552910 2552910 + Missense_Mutation SNP A A G rs199517402 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LFNG NM_001166355 exon2 c.A167G p.E56G TGGATGAGTGGAG . 57.0 4.0 68.0 0.0 . 57 . . Atlas-SNP MMD2 221938 hgsc.bcm.edu hg19 7 4959927 4959927 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MMD2 NM_198403 exon3 c.C165A p.N55K GTAGAGGTTGGAG . 78.0 24.0 102.0 0.0 . 63 . . Atlas-SNP ZNF12 7559 hgsc.bcm.edu hg19 7 6737036 6737036 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF12 NM_016265 exon4 c.A172T p.S58C ACTTGCTGATAAC . 77.0 23.0 105.0 0.0 . 53 . . Atlas-SNP PHF14 9678 hgsc.bcm.edu hg19 7 11080358 11080358 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PHF14 NM_014660 exon12 c.A2136T p.E712D AAAAGAAGGAGGC . 435.0 115.0 469.0 1.0 . 90 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12409623 12409623 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 VWDE_ENST00000275358,colon,carcinoma,0,2 VWDE NM_001135924 exon12 c.C2309T p.T770M AGATCCGTTTGGC . 134.0 39.0 138.0 0.0 . 123 . . Atlas-SNP AGR2 10551 hgsc.bcm.edu hg19 7 16832566 16832566 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . AGR2 NM_006408 exon8 c.A494G p.K165R GCTTTCTTCATGT . 50.0 10.0 64.0 0.0 . 14 . . Atlas-SNP MACC1 346389 hgsc.bcm.edu hg19 7 20198999 20198999 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MACC1 NM_182762 exon5 c.T985A p.Y329N CTTTATAAATGTA . 81.0 25.0 93.0 0.0 . 99 . . Atlas-SNP NME8 51314 hgsc.bcm.edu hg19 7 37936559 37936559 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_016616 exon17 c.A1632T p.A544A AGAAGCAAAATTA . 155.0 34.0 153.0 0.0 . . . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45614683 45614683 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADCY1 NM_021116 exon1 c.A541T p.S181C GTGCGCAGCCTGC . 85.0 24.0 82.0 0.0 . 187 . . Atlas-SNP ZPBP 11055 hgsc.bcm.edu hg19 7 50132767 50132767 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZPBP NM_007009 exon1 c.A24T p.P8P CCGCGCTGGGCCA . 42.0 15.0 67.0 0.0 . 65 . . Atlas-SNP EGFR 1956 hgsc.bcm.edu hg19 7 55273271 55273271 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EGFR NM_005228 exon28 c.A3594T p.L1198L ATACCTAAGGGTC . 152.0 31.0 153.0 0.0 . 20426 . . Atlas-SNP FKBP6 8468 hgsc.bcm.edu hg19 7 72745693 72745693 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FKBP6 NM_003602 exon5 c.C502A p.L168M AAGGTCCTGAAAG . 82.0 39.0 88.0 0.0 . 35 . . Atlas-SNP UPK3B 80761 hgsc.bcm.edu hg19 7 76143358 76143358 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . UPK3B NM_030570 exon3 c.A721C p.T241P CCTCCTACTCTTG . 100.0 36.0 102.0 0.0 . 15 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82544071 82544071 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PCLO NM_014510 exon7 c.A13231G p.T4411A CTCGAGTCCGTGA . 85.0 17.0 103.0 0.0 . 1506 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83689783 83689783 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SEMA3A NM_006080 exon5 c.T545C p.I182T GCACCTATTAAAA . 173.0 40.0 205.0 0.0 . 121 . . Atlas-SNP SEMA3D 223117 hgsc.bcm.edu hg19 7 84649627 84649627 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SEMA3D NM_152754 exon12 c.T1425A p.T475T GAGGACAGTTCCA . 70.0 18.0 79.0 0.0 . 177 . . Atlas-SNP COL1A2 1278 hgsc.bcm.edu hg19 7 94055788 94055788 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . COL1A2 NM_000089 exon46 c.A3051T p.R1017S GCCCAGAGGTCTT . 103.0 27.0 130.0 0.0 . 240 . . Atlas-SNP KPNA7 402569 hgsc.bcm.edu hg19 7 98786068 98786068 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KPNA7 NM_001145715 exon6 c.A755T p.H252L TCCTGGTGCTGCA . 115.0 23.0 93.0 0.0 . 31 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100677847 100677847 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MUC17 NM_001040105 exon3 c.C3150T p.S1050S TGTCAGCACCACA . 183.0 45.0 129.0 0.0 . 804 . . Atlas-SNP LRRC17 10234 hgsc.bcm.edu hg19 7 102574534 102574534 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LRRC17 NM_005824 exon2 c.A174T p.T58T GTACACATATCTC . 97.0 28.0 114.0 0.0 . 45 . . Atlas-SNP FOXP2 93986 hgsc.bcm.edu hg19 7 114299675 114299675 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FOXP2 NM_148898 exon14 c.A1669T p.S557C ATTTACAGCTGGT . 133.0 30.0 157.0 0.0 . 133 . . Atlas-SNP ASZ1 136991 hgsc.bcm.edu hg19 7 117060261 117060261 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ASZ1 NM_130768 exon4 c.A396G p.V132V TAGTTCTACACAC . 40.0 11.0 45.0 0.0 . 56 . . Atlas-SNP PLXNA4 91584 hgsc.bcm.edu hg19 7 132192611 132192611 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PLXNA4 NM_001105543 exon2 c.T842A p.V281E AGCCTCACGAGCT . 88.0 32.0 71.0 0.0 . 873 . . Atlas-SNP MKRN1 23608 hgsc.bcm.edu hg19 7 140171777 140171777 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MKRN1 NM_013446 exon2 c.A220T p.N74Y GACAGTTGTCTCC . 80.0 16.0 84.0 0.0 . 35 . . Atlas-SNP PRSS1 5644 hgsc.bcm.edu hg19 7 142459633 142459633 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRSS1 NM_002769 exon3 c.A209T p.Q70L GCATCCAGGTGAG . 137.0 20.0 148.0 0.0 . 68 . . Atlas-SNP EPHB6 2051 hgsc.bcm.edu hg19 7 142562074 142562074 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EPHB6 NM_004445 exon7 c.C516T p.S172S CTCCTCCTCTTCT . 81.0 7.0 94.0 0.0 . 168 . . Atlas-SNP TRPV5 56302 hgsc.bcm.edu hg19 7 142609803 142609803 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRPV5 NM_019841 exon13 c.G1633T p.A545S AGTTGGCAGGTGC . 177.0 105.0 208.0 0.0 . 164 . . Atlas-SNP CNTNAP2 26047 hgsc.bcm.edu hg19 7 146825821 146825821 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CNTNAP2 NM_014141 exon7 c.A976T p.S326C AAGCCCAGCTCCA . 168.0 40.0 172.0 0.0 . 392 . . Atlas-SNP KCNH2 3757 hgsc.bcm.edu hg19 7 150643965 150643965 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KCNH2 NM_000238 exon14 c.G3330T p.Q1110H GCTTACCTGAGAA . 48.0 16.0 92.0 0.0 . 157 . . Atlas-SNP DNAJB6 10049 hgsc.bcm.edu hg19 7 157174947 157174947 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNAJB6 NM_058246 exon6 c.T354C p.P118P AGACCCTTTTGAG . 55.0 4.0 75.0 0.0 . 39 . . Atlas-SNP XKR5 389610 hgsc.bcm.edu hg19 8 6690291 6690291 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . XKR5 NM_207411 exon2 c.G190A p.G64R AATGCCCTGGATG . 122.0 21.0 100.0 0.0 . 20 . . Atlas-SNP MTMR9 66036 hgsc.bcm.edu hg19 8 11177226 11177226 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MTMR9 NM_015458 exon9 c.G1365A p.M455I GACGATGTCTTTG . 83.0 15.0 79.0 0.0 . 58 . . Atlas-SNP ATP6V1B2 526 hgsc.bcm.edu hg19 8 20068078 20068078 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATP6V1B2 NM_001693 exon5 c.386-2A>T . ATTTCTAGGTCGG . 165.0 36.0 144.0 0.0 . 34 . . Atlas-SNP PRKDC 5591 hgsc.bcm.edu hg19 8 48746959 48746959 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRKDC NM_001081640 exon60 c.7951-2A>T . TCCATCTGTGACA . 61.0 16.0 53.0 0.0 . 394 . . Atlas-SNP OPRK1 4986 hgsc.bcm.edu hg19 8 54142248 54142248 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OPRK1 NM_000912 exon4 c.T752A p.L251Q AGACGCAGGATCA . 203.0 30.0 165.0 0.0 . 90 . . Atlas-SNP CYP7B1 9420 hgsc.bcm.edu hg19 8 65528610 65528610 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CYP7B1 NM_004820 exon3 c.A488T p.Q163L AAAACTTGTTTTA . 90.0 20.0 75.0 0.0 . 94 . . Atlas-SNP ARFGEF1 10565 hgsc.bcm.edu hg19 8 68211585 68211585 + Silent SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARFGEF1 NM_006421 exon4 c.T318G p.L106L AGCAATAAGTTTC . 157.0 90.0 135.0 0.0 . 196 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77617787 77617787 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZFHX4 NM_024721 exon2 c.A1464C p.L488F AGTATTAGGTGAA . 233.0 39.0 142.0 0.0 . 878 . . Atlas-SNP ZFHX4 79776 hgsc.bcm.edu hg19 8 77766437 77766437 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZFHX4 NM_024721 exon10 c.C7280T p.P2427L CCAAACCAGCCCT . 157.0 32.0 132.0 0.0 . 878 . . Atlas-SNP CDH17 1015 hgsc.bcm.edu hg19 8 95174341 95174341 + Silent SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDH17 NM_004063 exon11 c.T1332C p.D444D GATCTGATCATTG . 353.0 257.0 213.0 0.0 . 119 . . Atlas-SNP KIAA1429 25962 hgsc.bcm.edu hg19 8 95539091 95539091 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KIAA1429 NM_015496 exon8 c.A1381T p.K461X CTAATTTGGTCCC . 113.0 49.0 70.0 0.0 . 176 . . Atlas-SNP CSMD3 114788 hgsc.bcm.edu hg19 8 113599330 113599330 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CSMD3 NM_198123 exon23 c.A3850T p.R1284X ATGTTCTGGCTGA . 157.0 30.0 99.0 0.0 . 2325 . . Atlas-SNP FER1L6 654463 hgsc.bcm.edu hg19 8 125103790 125103790 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FER1L6 NM_001039112 exon34 c.T4518C p.F1506F AGTCTTTTCTGGA . 196.0 101.0 150.0 0.0 . 268 . . Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133899402 133899402 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TG NM_003235 exon9 c.A1785T p.L595F AGATTTAGGTGAT . 239.0 36.0 173.0 0.0 . 416 . . Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133913655 133913655 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TG NM_003235 exon16 c.G3491T p.G1164V GCCCAGGCTATGT . 163.0 28.0 121.0 0.0 . 416 . . Atlas-SNP CYP11B1 1584 hgsc.bcm.edu hg19 8 143961039 143961039 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CYP11B1 NM_000497 exon1 c.T191A p.L64Q AGGTGCAGGTCCT . 187.0 47.0 137.0 0.0 . 128 . . Atlas-SNP RECQL4 9401 hgsc.bcm.edu hg19 8 145738779 145738779 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RECQL4 NM_004260 exon14 c.G2286A p.Q762Q CTGGCCCTGCATG . 121.0 12.0 106.0 0.0 . 75 . . Atlas-SNP DOCK8 81704 hgsc.bcm.edu hg19 9 336700 336700 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DOCK8 NM_203447 exon12 c.T1404A p.V468V GAGCGTTAGCAGC . 99.0 32.0 109.0 0.0 . 401 . . Atlas-SNP GLDC 2731 hgsc.bcm.edu hg19 9 6592892 6592892 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GLDC NM_000170 exon10 c.G1360T p.A454S GCTGAGCGGCCCT . 303.0 173.0 341.0 1.0 . 118 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8341889 8341889 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTPRD NM_002839 exon40 c.A4751T p.H1584L GTTACATGGCCAT . 68.0 14.0 109.0 0.0 . 1348 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8636718 8636718 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTPRD NM_001040712 exon2 c.T191G p.V64G TTGCTGACTTTCT . 105.0 6.0 147.0 0.0 . 1348 . . Atlas-SNP BNC2 54796 hgsc.bcm.edu hg19 9 16418994 16418994 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BNC2 NM_017637 exon7 c.T3293A p.V1098E TAATCTACTGAAG . 67.0 13.0 68.0 0.0 . 166 . . Atlas-SNP IFNA7 3444 hgsc.bcm.edu hg19 9 21202098 21202098 + Missense_Mutation SNP C C T rs112551811 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IFNA7 NM_021057 exon1 c.G67A p.G23S CACAGCCCAGAGA . 144.0 33.0 134.0 0.0 . 24 . C|0.500;T|0.500 Atlas-SNP TUSC1 286319 hgsc.bcm.edu hg19 9 25677993 25677993 + Silent SNP G G A rs377425143 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TUSC1 NM_001004125 exon1 c.C327T p.S109S GAAGAGGCTGCGG . 67.0 13.0 70.0 0.0 . 7 . . Atlas-SNP TAF1L 138474 hgsc.bcm.edu hg19 9 32632698 32632698 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TAF1L NM_153809 exon1 c.C2880A p.A960A CTTCATGGCAGCA . 197.0 55.0 222.0 0.0 . 382 . . Atlas-SNP TAF1L 138474 hgsc.bcm.edu hg19 9 32632699 32632699 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TAF1L NM_153809 exon1 c.C2879A p.A960D TTCATGGCAGCAA . 198.0 55.0 220.0 0.0 . 382 . . Atlas-SNP UNC13B 10497 hgsc.bcm.edu hg19 9 35403468 35403468 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . UNC13B NM_006377 exon38 c.A4362T p.T1454T GCAGACAGCGGGT . 120.0 36.0 172.0 0.0 . 153 . . Atlas-SNP CA9 768 hgsc.bcm.edu hg19 9 35675916 35675916 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CA9 NM_001216 exon3 c.A592T p.N198Y CGCAACAATGGCC . 52.0 12.0 74.0 0.0 . 48 . . Atlas-SNP TLN1 7094 hgsc.bcm.edu hg19 9 35707454 35707454 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TLN1 NM_006289 exon36 c.G4664T p.R1555L TGGGCACGGTTCT . 51.0 25.0 78.0 0.0 . 185 . . Atlas-SNP DAPK1 1612 hgsc.bcm.edu hg19 9 90296521 90296521 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DAPK1 NM_004938 exon20 c.C2204T p.P735L CTTCACCCCTGGC . 54.0 16.0 55.0 0.0 . 329 . . Atlas-SNP SEMA4D 10507 hgsc.bcm.edu hg19 9 91994239 91994239 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SEMA4D NM_006378 exon18 c.A1969T p.T657S ACAAGGTGGGGGC . 57.0 14.0 101.0 0.0 . 81 . . Atlas-SNP FGD3 89846 hgsc.bcm.edu hg19 9 95772649 95772649 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FGD3 NM_001083536 exon7 c.A959T p.D320V CCCCAGACCGGAA . 92.0 31.0 126.0 0.0 . 116 . . Atlas-SNP CCDC180 0 hgsc.bcm.edu hg19 9 100116932 100116932 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_020893 exon23 c.A3216T p.I1072I CCGGATAGAGTTG . 173.0 35.0 205.0 0.0 . . . . Atlas-SNP ZNF462 58499 hgsc.bcm.edu hg19 9 109765689 109765689 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF462 NM_021224 exon11 c.A7171T p.S2391C ATGAACAGCAAGG . 65.0 18.0 73.0 0.0 . 322 . . Atlas-SNP SVEP1 79987 hgsc.bcm.edu hg19 9 113169638 113169638 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SVEP1 NM_153366 exon38 c.A8242T p.I2748F CTAGAATGTGTCC . 92.0 15.0 107.0 0.0 . 326 . . Atlas-SNP ZNF618 114991 hgsc.bcm.edu hg19 9 116798646 116798646 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF618 NM_133374 exon12 c.A956T p.Q319L ACATGCAGTCCCA . 106.0 24.0 117.0 0.0 . 184 . . Atlas-SNP PTGS1 5742 hgsc.bcm.edu hg19 9 125148941 125148941 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTGS1 NM_000962 exon9 c.A1226T p.N409I TGTTCAACACCTC . 78.0 18.0 111.0 0.0 . 84 . . Atlas-SNP PKN3 29941 hgsc.bcm.edu hg19 9 131469505 131469505 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PKN3 NM_013355 exon6 c.A656T p.Q219L AGGCCCAGGCCCA . 55.0 12.0 73.0 0.0 . 62 . . Atlas-SNP C9orf171 389799 hgsc.bcm.edu hg19 9 135374923 135374923 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C9orf171 NM_207417 exon4 c.G568A p.D190N CAGGATGACCGGC . 149.0 38.0 180.0 0.0 . 53 . . Atlas-SNP BRD3 8019 hgsc.bcm.edu hg19 9 136905393 136905393 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BRD3 NM_007371 exon10 c.1408-2A>T . TTCAGCTGGAAAA . 31.0 5.0 19.0 0.0 . 82 . . Atlas-SNP WDR5 11091 hgsc.bcm.edu hg19 9 137023031 137023031 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WDR5 NM_052821 exon13 c.A921T p.T307T CTCAACAGCTTGT . 62.0 19.0 82.0 0.0 . 29 . . Atlas-SNP C9orf169 375791 hgsc.bcm.edu hg19 9 140120486 140120486 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C9orf169 NM_199001 exon2 c.G413T p.C138F ACAGCTGCTGCTG . 81.0 16.0 73.0 0.0 . 6 . . Atlas-SNP NELFB 25920 hgsc.bcm.edu hg19 9 140166672 140166672 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_015456 exon11 c.A1485T p.P495P CTCTCCAAGGTAG . 60.0 21.0 55.0 0.0 . . . . Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13214750 13214750 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MCM10 NM_182751 exon5 c.A580G p.K194E ACACCAAAGGCTT . 92.0 23.0 112.0 0.0 . 76 . . Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24722117 24722117 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KIAA1217 NM_019590 exon4 c.T747C p.D249D AAATGATGTAAGG . 38.0 11.0 34.0 0.0 . 235 . . Atlas-SNP MYO3A 53904 hgsc.bcm.edu hg19 10 26385344 26385344 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYO3A NM_017433 exon16 c.T1597A p.Y533N TACATTTATGCTG . 373.0 91.0 339.0 0.0 . 371 . . Atlas-SNP GAD2 2572 hgsc.bcm.edu hg19 10 26518688 26518688 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GAD2 NM_000818 exon7 c.T822C p.I274I GCTCATTGCCTTC . 52.0 8.0 76.0 0.0 . 116 . . Atlas-SNP GDF10 2662 hgsc.bcm.edu hg19 10 48429198 48429198 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GDF10 NM_004962 exon2 c.A688T p.R230W GGTCCCTCTCCTC . 87.0 22.0 92.0 0.0 . 79 . . Atlas-SNP C10orf71 118461 hgsc.bcm.edu hg19 10 50531471 50531471 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C10orf71 NM_001135196 exon3 c.C881A p.A294D ACACAGCTGGAAC . 103.0 31.0 135.0 0.0 . 179 . . Atlas-SNP TMEM26 219623 hgsc.bcm.edu hg19 10 63212811 63212811 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMEM26 NM_178505 exon1 c.T29C p.L10P GTGGCCAGGGCGT . 88.0 26.0 97.0 0.0 . 47 . . Atlas-SNP GRID1 2894 hgsc.bcm.edu hg19 10 87379775 87379775 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GRID1 NM_017551 exon14 c.T2209G p.Y737D AGGCGTAGTTCCC . 71.0 26.0 153.0 0.0 . 204 . . Atlas-SNP ANKRD1 27063 hgsc.bcm.edu hg19 10 92678913 92678913 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANKRD1 NM_014391 exon3 c.T320C p.V107A TCCTTTACAACTG . 60.0 20.0 64.0 0.0 . 50 . . Atlas-SNP MYOF 26509 hgsc.bcm.edu hg19 10 95072901 95072901 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYOF NM_013451 exon51 c.A5765T p.D1922V ATCATGTCCAATC . 75.0 20.0 100.0 0.0 . 177 . . Atlas-SNP PIK3AP1 118788 hgsc.bcm.edu hg19 10 98369550 98369550 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PIK3AP1 NM_152309 exon14 c.G2089T p.G697C TGGGGCCACTCTC . 103.0 54.0 137.0 0.0 . 111 . . Atlas-SNP ARHGAP19 84986 hgsc.bcm.edu hg19 10 99025682 99025682 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARHGAP19 NM_001204300 exon2 c.A257T p.K86M GGCAACTTAAGGT . 112.0 38.0 132.0 0.0 . 72 . . Atlas-SNP LDB1 8861 hgsc.bcm.edu hg19 10 103870894 103870894 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LDB1 NM_001113407 exon4 c.A181T p.T61S ATGGTGTGTGCCT . 49.0 14.0 53.0 0.0 . 61 . . Atlas-SNP CALHM1 255022 hgsc.bcm.edu hg19 10 105215321 105215321 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CALHM1 NM_001001412 exon2 c.A739T p.I247F GCTGGATGCAGAC . 83.0 17.0 96.0 0.0 . 33 . . Atlas-SNP ADD3 120 hgsc.bcm.edu hg19 10 111879082 111879082 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADD3 NM_001121 exon7 c.A831T p.Q277H AATTCAACTGCAG . 154.0 42.0 171.0 0.0 . 89 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117059542 117059542 + Splice_Site SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATRNL1 NM_207303 exon16 c.2416-2A>G . GTTTACAGAAAGT . 68.0 15.0 83.0 0.0 . 219 . . Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123970404 123970404 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TACC2 NM_206862 exon9 c.A6464T p.Q2155L CGCAACAGGAGCC . 42.0 8.0 65.0 0.0 . 271 . . Atlas-SNP FAM24A 118670 hgsc.bcm.edu hg19 10 124672386 124672386 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FAM24A NM_001029888 exon3 c.T234A p.S78S TCCATCTCTCCAG . 116.0 40.0 127.0 0.0 . 16 . . Atlas-SNP VENTX 27287 hgsc.bcm.edu hg19 10 135053795 135053795 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 VENTX,right_upper_lobe,carcinoma,0,1 VENTX NM_014468 exon3 c.G762A p.T254T ACAGACGGGGGAT . 52.0 17.0 50.0 0.0 . 24 . . Atlas-SNP PKP3 11187 hgsc.bcm.edu hg19 11 399156 399156 + Silent SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PKP3 NM_007183 exon5 c.A1233G p.T411T GCGGACACTGCGG . 74.0 18.0 106.0 0.0 . 36 . . Atlas-SNP KRTAP5-6 440023 hgsc.bcm.edu hg19 11 1718756 1718756 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KRTAP5-6 NM_001012416 exon1 c.G281A p.C94Y AGCCCTGCTACTG . 90.0 29.0 119.0 0.0 . 18 . . Atlas-SNP OR51L1 119682 hgsc.bcm.edu hg19 11 5020231 5020231 + Missense_Mutation SNP A A G rs61910724 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR51L1 NM_001004755 exon1 c.A19G p.S7G AATAACAGTGATG . 106.0 65.0 118.0 0.0 . 60 . A|0.987;C|0.013 Atlas-SNP OR52E2 119678 hgsc.bcm.edu hg19 11 5080160 5080160 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR52E2 NM_001005164 exon1 c.A698T p.E233V CGGGCTTCATGAG . 155.0 35.0 184.0 0.0 . 63 . . Atlas-SNP OR51B6 390058 hgsc.bcm.edu hg19 11 5373112 5373112 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR51B6 NM_001004750 exon1 c.C375T p.R125R CATCCGCAGCCCC . 105.0 55.0 107.0 0.0 . 53 . . Atlas-SNP OR52B6 340980 hgsc.bcm.edu hg19 11 5602597 5602597 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR52B6 NM_001005162 exon1 c.T491C p.V164A AGATCGTCACTGC . 45.0 11.0 48.0 0.0 . 37 . . Atlas-SNP OR56A4 120793 hgsc.bcm.edu hg19 11 6024147 6024147 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR56A4 NM_001005179 exon1 c.T232A p.W78R GCTGCCAGCTCTG . 148.0 34.0 169.0 0.0 . 66 . . Atlas-SNP SBF2 81846 hgsc.bcm.edu hg19 11 9868576 9868576 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SBF2 NM_030962 exon23 c.A2861T p.K954M ATCTTCTTCTCCT . 97.0 20.0 129.0 0.0 . 146 . . Atlas-SNP DKK3 27122 hgsc.bcm.edu hg19 11 11987363 11987363 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DKK3 NM_001018057 exon6 c.C823T p.P275S TGTGGGGCTGGCA . 39.0 9.0 35.0 0.0 . 35 . . Atlas-SNP CYP2R1 120227 hgsc.bcm.edu hg19 11 14902118 14902118 + Silent SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CYP2R1 NM_024514 exon3 c.A564C p.S188S TATGTTTGAAACA . 90.0 22.0 92.0 0.0 . 41 . . Atlas-SNP ELP4 26610 hgsc.bcm.edu hg19 11 31669364 31669364 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ELP4 NM_019040 exon8 c.A1003T p.R335X TCTGAGAGAGAAA . 144.0 47.0 116.0 0.0 . 78 . . Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu hg19 11 33566763 33566763 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_012194 exon2 c.T2333A p.L778Q CCGCGCTGACATC . 108.0 34.0 127.0 0.0 . . . . Atlas-SNP CD44 960 hgsc.bcm.edu hg19 11 35226078 35226078 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CD44 NM_000610 exon10 c.T1173A p.S391R TAGTAGTACAACG . 83.0 23.0 86.0 0.0 . 48 . . Atlas-SNP LDLRAD3 143458 hgsc.bcm.edu hg19 11 36250861 36250861 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LDLRAD3 NM_174902 exon6 c.A952T p.S318C GACACCAGCCACA . 190.0 46.0 195.0 0.0 . 52 . . Atlas-SNP RAG2 5897 hgsc.bcm.edu hg19 11 36614484 36614484 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RAG2 NM_001243785 exon3 c.A1235T p.E412V CCTGTCTCAGACT . 55.0 13.0 72.0 0.0 . 92 . . Atlas-SNP EXT2 2132 hgsc.bcm.edu hg19 11 44253901 44253901 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EXT2 NM_207122 exon11 c.1663-2A>T . GTCCTTAGGTCTG . 80.0 22.0 122.0 0.0 . 129 . . Atlas-SNP CREB3L1 90993 hgsc.bcm.edu hg19 11 46329400 46329400 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CREB3L1 NM_052854 exon3 c.A365T p.K122I GACACAAACTGTG . 153.0 46.0 200.0 0.0 . 30 . . Atlas-SNP OR5D18 219438 hgsc.bcm.edu hg19 11 55587486 55587486 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR5D18 NM_001001952 exon1 c.T381A p.I127I GGCCATTTGCAAC . 109.0 23.0 138.0 0.0 . 121 . . Atlas-SNP OR5F1 338674 hgsc.bcm.edu hg19 11 55761572 55761572 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR5F1 NM_003697 exon1 c.T530A p.F177Y CAGAAGAAGTGAT . 127.0 33.0 169.0 0.0 . 116 . . Atlas-SNP MPEG1 219972 hgsc.bcm.edu hg19 11 58978713 58978713 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MPEG1 NM_001039396 exon1 c.T1626G p.D542E AGCAGGATCTACC . 63.0 12.0 93.0 0.0 . 72 . . Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61511593 61511593 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DAGLA NM_006133 exon20 c.T2761A p.F921I AGCCTCTTCAACC . 97.0 34.0 113.0 0.0 . 109 . . Atlas-SNP SLC22A12 116085 hgsc.bcm.edu hg19 11 64359422 64359422 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC22A12 NM_144585 exon1 c.G394C p.V132L ACAATCGTGGCCA . 26.0 9.0 32.0 0.0 . 68 . . Atlas-SNP CATSPER1 117144 hgsc.bcm.edu hg19 11 65787819 65787819 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CATSPER1 NM_053054 exon8 c.T2033A p.L678Q TTGAACAGCGCCG . 88.0 28.0 95.0 0.0 . 101 . . Atlas-SNP CCDC87 55231 hgsc.bcm.edu hg19 11 66360350 66360350 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CCDC87 NM_018219 exon1 c.A137T p.Q46L AAGGACTGCAGAA . 68.0 23.0 78.0 0.0 . 83 . . Atlas-SNP MTL5 9633 hgsc.bcm.edu hg19 11 68517742 68517742 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MTL5 NM_001039656 exon2 c.A387T p.L129L CGCGGGTAGCAGC . 92.0 29.0 91.0 0.0 . 37 . . Atlas-SNP RSF1 51773 hgsc.bcm.edu hg19 11 77413496 77413496 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RSF1 NM_016578 exon6 c.A778G p.M260V AATCCATAGGCTG . 49.0 14.0 69.0 0.0 . 105 . . Atlas-SNP TRPC6 7225 hgsc.bcm.edu hg19 11 101323689 101323689 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRPC6 NM_004621 exon13 c.A2793T p.R931S GCATTATCTATTG . 83.0 17.0 107.0 0.0 . 132 . . Atlas-SNP TRPC6 7225 hgsc.bcm.edu hg19 11 101375297 101375297 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRPC6 NM_004621 exon2 c.A403T p.N135Y GGGCATTCTGGCC . 93.0 27.0 88.0 0.0 . 132 . . Atlas-SNP DSCAML1 57453 hgsc.bcm.edu hg19 11 117314605 117314605 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DSCAML1 NM_020693 exon21 c.A4039T p.K1347X CACCCTTGCCAGC . 33.0 11.0 33.0 0.0 . 286 . . Atlas-SNP TMPRSS13 84000 hgsc.bcm.edu hg19 11 117789473 117789473 + Silent SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMPRSS13 NM_001206790 exon2 c.A102C p.A34A TGGAGATGCCCGG . 72.0 19.0 68.0 0.0 . 75 . . Atlas-SNP PHLDB1 23187 hgsc.bcm.edu hg19 11 118502989 118502989 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PHLDB1 NM_001144758 exon9 c.A2355T p.T785T GGAGACAGGCATC . 144.0 43.0 173.0 0.0 . 103 . . Atlas-SNP CLMP 79827 hgsc.bcm.edu hg19 11 122945480 122945480 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CLMP NM_024769 exon6 c.T751A p.L251M ACACCAAGAGGAA . 62.0 13.0 83.0 0.0 . 39 . . Atlas-SNP MSANTD2 79684 hgsc.bcm.edu hg19 11 124637132 124637132 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MSANTD2 NM_024631 exon4 c.A1464T p.A488A AGAGCCTGCGGAA . 119.0 32.0 153.0 0.0 . 7 . . Atlas-SNP SLC6A13 6540 hgsc.bcm.edu hg19 12 333252 333252 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC6A13 NM_016615 exon11 c.A1217T p.Y406F TGAGGGTACATGT . 75.0 17.0 114.0 0.0 . 62 . . Atlas-SNP C12orf4 57102 hgsc.bcm.edu hg19 12 4645227 4645227 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . C12orf4 NM_020374 exon2 c.G134T p.G45V AGACGTCCATGCA . 201.0 52.0 228.0 0.0 . 58 . . Atlas-SNP KLRC4-KLRK1 0 hgsc.bcm.edu hg19 12 10532337 10532337 + Missense_Mutation SNP A A T rs377167821 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001199805 exon9 c.T203A p.I68N ATAATAATGAAAC . 135.0 37.0 182.0 0.0 . . . . Atlas-SNP BICD1 636 hgsc.bcm.edu hg19 12 32369351 32369351 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BICD1 NM_001714 exon2 c.A384T p.A128A ACAGGCAGAAAAC . 115.0 25.0 121.0 0.0 . 89 . . Atlas-SNP LRRK2 120892 hgsc.bcm.edu hg19 12 40761452 40761452 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LRRK2 NM_198578 exon51 c.A7469T p.Q2490L AGATACAATCTTG . 225.0 66.0 255.0 0.0 . 763 . . Atlas-SNP ARID2 196528 hgsc.bcm.edu hg19 12 46205216 46205216 + Nonsense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARID2 NM_152641 exon4 c.C300G p.Y100X AAAGTACGAGAAA . 79.0 43.0 99.0 0.0 . 311 . . Atlas-SNP RACGAP1 29127 hgsc.bcm.edu hg19 12 50388025 50388025 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RACGAP1 NM_013277 exon14 c.A1228T p.S410C CTTTGCTGAGGAG . 83.0 24.0 100.0 0.0 . 36 . . Atlas-SNP ESPL1 9700 hgsc.bcm.edu hg19 12 53684151 53684151 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ESPL1 NM_012291 exon24 c.G5262T p.L1754L AGTCCTGAATGAG . 37.0 16.0 55.0 0.0 . 158 . . Atlas-SNP TESPA1 9840 hgsc.bcm.edu hg19 12 55356690 55356690 + Missense_Mutation SNP T T A rs61733026 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001098815 exon9 c.A992T p.Q331L TCTTGCTGGAGGA . 71.0 16.0 93.0 0.0 . . . T|0.992;C|0.008 Atlas-SNP TESPA1 9840 hgsc.bcm.edu hg19 12 55357002 55357002 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001098815 exon9 c.T680C p.L227P ACAGCCAGTGTTT . 51.0 8.0 55.0 0.0 . . . . Atlas-SNP OR6C68 403284 hgsc.bcm.edu hg19 12 55886887 55886887 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR6C68 NM_001005519 exon1 c.T726C p.H242H TTCACATATTACT . 62.0 30.0 90.0 0.0 . 36 . . Atlas-SNP WIF1 11197 hgsc.bcm.edu hg19 12 65514841 65514841 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WIF1 NM_007191 exon1 c.A131T p.Q44L CTTGCCTGGTGAG . 129.0 29.0 147.0 0.0 . 96 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70983958 70983958 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PTPRB NM_001109754 exon8 c.T1836A p.L612L CACTACAAGAGAC . 110.0 32.0 114.0 0.0 . 676 . . Atlas-SNP OTOGL 283310 hgsc.bcm.edu hg19 12 80655748 80655748 + Splice_Site SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OTOGL NM_173591 exon18 c.1863-1G>C . TTTCTAGTTCTCC . 72.0 16.0 65.0 0.0 . 235 . . Atlas-SNP SLC5A8 160728 hgsc.bcm.edu hg19 12 101560282 101560282 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC5A8 NM_145913 exon12 c.A1516T p.N506Y GAACATTGTATAT . 47.0 17.0 99.0 0.0 . 102 . . Atlas-SNP STAB2 55576 hgsc.bcm.edu hg19 12 104071229 104071229 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . STAB2 NM_017564 exon25 c.2647-2A>T . TCCTGCAGGCAGA . 39.0 13.0 61.0 0.0 . 370 . . Atlas-SNP CHST11 50515 hgsc.bcm.edu hg19 12 105151144 105151144 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CHST11 NM_018413 exon3 c.T622A p.F208I ATCTCCTTCCACA . 90.0 31.0 159.0 0.0 . 54 . . Atlas-SNP MYO1H 283446 hgsc.bcm.edu hg19 12 109876380 109876380 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYO1H NM_001101421 exon22 c.G2201A p.R734Q TGGCTCGGAAGGC . 45.0 14.0 70.0 0.0 . 98 . . Atlas-SNP UBE3B 89910 hgsc.bcm.edu hg19 12 109921745 109921745 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . UBE3B NM_001270451 exon4 c.A241T p.R81W ATTGCCAGGAAAC . 74.0 29.0 118.0 0.0 . 116 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124298165 124298165 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNAH10 NM_207437 exon19 c.A3245T p.Y1082F AGCTCTATAATCT . 74.0 30.0 117.0 0.0 . 888 . . Atlas-SNP EP400 57634 hgsc.bcm.edu hg19 12 132464277 132464277 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EP400 NM_015409 exon3 c.A1374T p.G458G GGCCGGAAGCACA . 177.0 66.0 295.0 0.0 . 370 . . Atlas-SNP POLE 5426 hgsc.bcm.edu hg19 12 133219131 133219131 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POLE NM_006231 exon37 c.A4913T p.N1638I TCCAGGTTGAGGT . 41.0 13.0 71.0 0.0 . 416 . . Atlas-SNP TUBA3C 7278 hgsc.bcm.edu hg19 13 19752513 19752513 + Missense_Mutation SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TUBA3C NM_006001 exon3 c.A248C p.Y83S TGCCTATAGGTTC . 69.0 26.0 131.0 0.0 . 166 . . Atlas-SNP SKA3 221150 hgsc.bcm.edu hg19 13 21734117 21734117 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SKA3 NM_145061 exon6 c.A839T p.Y280F TTGGTATATTCGG . 43.0 20.0 101.0 0.0 . 76 . . Atlas-SNP ATP12A 479 hgsc.bcm.edu hg19 13 25283840 25283840 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATP12A NM_001185085 exon19 c.A2655T p.G885G CCTGGGAGCTTTC . 52.0 19.0 104.0 0.0 . 172 . . Atlas-SNP GPR12 2835 hgsc.bcm.edu hg19 13 27333221 27333221 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GPR12 NM_005288 exon2 c.A744T p.K248N GACCCCTTTCCGG . 72.0 30.0 89.0 0.0 . 67 . . Atlas-SNP CDX2 1045 hgsc.bcm.edu hg19 13 28542904 28542904 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDX2 NM_001265 exon1 c.C240T p.Y80Y GGGCGCGTAGCCA . 43.0 22.0 54.0 0.0 . 30 . . Atlas-SNP PDS5B 23047 hgsc.bcm.edu hg19 13 33320210 33320210 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDS5B NM_015032 exon24 c.A2708T p.Q903L TAGAACAATATCA . 47.0 15.0 76.0 0.0 . 141 . . Atlas-SNP FAM216B 144809 hgsc.bcm.edu hg19 13 43360937 43360937 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_182508 exon3 c.T138A p.I46I CAGCATTATGAGG . 49.0 15.0 103.0 0.0 . . . . Atlas-SNP TSC22D1 8848 hgsc.bcm.edu hg19 13 45148297 45148297 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TSC22D1 NM_183422 exon1 c.A1914T p.T638T CATCTGTGTAGAA . 44.0 10.0 52.0 0.0 . 88 . . Atlas-SNP DACH1 1602 hgsc.bcm.edu hg19 13 72440907 72440907 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DACH1 NM_080759 exon1 c.A1T p.M1L CTGCCATGGTCAC . 129.0 23.0 173.0 0.0 . 123 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77755971 77755971 + Silent SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYCBP2 NM_015057 exon33 c.G4806T p.L1602L GGAAGTCAGCTTA . 78.0 55.0 88.0 0.0 . 1029 . . Atlas-SNP MYO16 23026 hgsc.bcm.edu hg19 13 109535531 109535531 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYO16 NM_001198950 exon13 c.T1550A p.L517H TCATCCTCAGGTG . 39.0 13.0 55.0 0.0 . 285 . . Atlas-SNP OR5AU1 390445 hgsc.bcm.edu hg19 14 21624103 21624103 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR5AU1 NM_001004731 exon1 c.A82T p.S28C TCTGACTGGGTTT . 112.0 27.0 113.0 0.0 . 46 . . Atlas-SNP MMP14 4323 hgsc.bcm.edu hg19 14 23315040 23315040 + Missense_Mutation SNP C C T rs202185020 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MMP14 NM_004995 exon10 c.C1541T p.P514L GCCGGCCGGATGA . 97.0 51.0 144.0 0.0 . 40 . . Atlas-SNP SLC22A17 51310 hgsc.bcm.edu hg19 14 23821009 23821009 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC22A17 NM_016609 exon3 c.T323A p.I108N CCCAAGATGAAGA . 259.0 81.0 298.0 0.0 . 32 . . Atlas-SNP RNF31 55072 hgsc.bcm.edu hg19 14 24620416 24620416 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RNF31 NM_017999 exon9 c.A1565T p.Q522L CTCTGCAGTGGTT . 28.0 13.0 28.0 0.0 . 95 . . Atlas-SNP NYNRIN 57523 hgsc.bcm.edu hg19 14 24884806 24884806 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NYNRIN NM_025081 exon9 c.T3851A p.L1284Q ACCGCCTGCTCAC . 50.0 11.0 71.0 0.0 . 120 . . Atlas-SNP SIX4 51804 hgsc.bcm.edu hg19 14 61186827 61186827 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SIX4 NM_017420 exon2 c.T1200A p.I400I GCTCACAATGTTT . 110.0 36.0 128.0 0.0 . 69 . . Atlas-SNP HIF1A 3091 hgsc.bcm.edu hg19 14 62200973 62200973 + Missense_Mutation SNP A A T rs367767967 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HIF1A NM_001243084 exon8 c.A1070T p.Q357L AACCACAGTGCAT . 107.0 32.0 129.0 0.0 . 120 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64408641 64408641 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SYNE2 NM_182914 exon5 c.C276T p.I92I TAGAATCAATATA . 45.0 16.0 77.0 0.0 . 577 . . Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64408680 64408680 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SYNE2 NM_182914 exon5 c.A315T p.S105S CCGATCAGTAAGT . 46.0 19.0 65.0 0.0 . 577 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68233158 68233158 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZFYVE26 NM_015346 exon32 c.A5797T p.S1933C AGGCGCTGGGGGC . 121.0 39.0 191.0 0.0 . 223 . . Atlas-SNP PLEKHD1 400224 hgsc.bcm.edu hg19 14 69967330 69967330 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PLEKHD1 NM_001161498 exon3 c.A280T p.K94X GAGCCCAAGGAAG . 27.0 10.0 69.0 0.0 . 24 . . Atlas-SNP POMT2 29954 hgsc.bcm.edu hg19 14 77767555 77767555 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POMT2 NM_013382 exon6 c.A694T p.T232S CGCCAGTCAGGCT . 91.0 29.0 154.0 0.0 . 47 . . Atlas-SNP SMEK1 55671 hgsc.bcm.edu hg19 14 91942204 91942204 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SMEK1 NM_032560 exon8 c.A1217T p.Q406L TCATTCTGTTGTG . 95.0 30.0 123.0 0.0 . 94 . . Atlas-SNP CATSPERB 79820 hgsc.bcm.edu hg19 14 92091187 92091187 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CATSPERB NM_024764 exon18 c.A1907T p.Y636F AGTTTATAGACAT . 82.0 37.0 137.0 0.0 . 114 . . Atlas-SNP RIN3 79890 hgsc.bcm.edu hg19 14 93118727 93118727 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RIN3 NM_024832 exon6 c.A1333T p.S445C CCTCACAGCATGC . 152.0 57.0 279.0 0.0 . 81 . . Atlas-SNP BCL11B 64919 hgsc.bcm.edu hg19 14 99642349 99642349 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BCL11B NM_138576 exon4 c.C824T p.A275V GACTGCGCCACGG . 129.0 39.0 167.0 0.0 . 108 . . Atlas-SNP CDC42BPB 9578 hgsc.bcm.edu hg19 14 103442078 103442078 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDC42BPB NM_006035 exon11 c.G1450A p.D484N CTTTATCTCGGTT . 59.0 41.0 91.0 0.0 . 123 . . Atlas-SNP TDRD9 122402 hgsc.bcm.edu hg19 14 104433111 104433111 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TDRD9 NM_153046 exon5 c.T708A p.L236L CCTGCTTCAGAAA . 84.0 30.0 68.0 0.0 . 175 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105419689 105419689 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . AHNAK2 NM_138420 exon7 c.T2099A p.V700E GCAGACACATCCA . 127.0 39.0 182.0 0.0 . 719 . . Atlas-SNP GABRG3 2567 hgsc.bcm.edu hg19 15 27222169 27222169 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GABRG3 NM_001270873 exon2 c.A74G p.D25G AAGAGGATGAATA . 75.0 26.0 101.0 0.0 . 115 . . Atlas-SNP THBS1 7057 hgsc.bcm.edu hg19 15 39885868 39885868 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . THBS1 NM_003246 exon19 c.A3266T p.Q1089L CTGGCCAGGTAAG . 58.0 24.0 110.0 0.0 . 106 . . Atlas-SNP MYEF2 50804 hgsc.bcm.edu hg19 15 48443350 48443350 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYEF2 NM_016132 exon14 c.G1325A p.G442E GCAAACCCTCCAA . 239.0 84.0 337.0 1.0 . 67 . . Atlas-SNP PRTG 283659 hgsc.bcm.edu hg19 15 55967845 55967845 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRTG NM_173814 exon9 c.A1418G p.N473S GTGTCATTTCCGA . 53.0 18.0 78.0 0.0 . 110 . . Atlas-SNP TMEM202 338949 hgsc.bcm.edu hg19 15 72700152 72700152 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMEM202 NM_001080462 exon5 c.C740A p.A247D CACCTGCTAAAGA . 45.0 17.0 65.0 0.0 . 40 . . Atlas-SNP RASGRF1 5923 hgsc.bcm.edu hg19 15 79291113 79291113 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RASGRF1 NM_002891 exon19 c.C2849A p.A950D TTGGTGGCTGCTC . 43.0 13.0 58.0 0.0 . 168 . . Atlas-SNP HDGFRP3 0 hgsc.bcm.edu hg19 15 83826759 83826759 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HDGFRP3 NM_016073 exon3 c.A196G p.K66E ACTCCTTATATGG . 49.0 21.0 83.0 0.0 . 17 . . Atlas-SNP ADAMTSL3 57188 hgsc.bcm.edu hg19 15 84694127 84694127 + Missense_Mutation SNP G G T rs143304781 alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ADAMTSL3 NM_207517 exon27 c.G4595T p.R1532L AAGACCGGCCTCT . 156.0 59.0 230.0 0.0 . 290 . G|1.000;A|0.000 Atlas-SNP IQGAP1 8826 hgsc.bcm.edu hg19 15 91038004 91038004 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IQGAP1 NM_003870 exon36 c.A4688G p.Y1563C TGAAATATACAGC . 182.0 69.0 267.0 1.0 . 140 . . Atlas-SNP CHD2 1106 hgsc.bcm.edu hg19 15 93552536 93552536 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CHD2 NM_001271 exon35 c.C4575T p.H1525H GGAGCACATCAAA . 63.0 30.0 92.0 0.0 . 280 . . Atlas-SNP IGF1R 3480 hgsc.bcm.edu hg19 15 99251163 99251163 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IGF1R NM_000875 exon2 c.A467T p.D156V CTGTGGACTGGTC . 91.0 42.0 164.0 0.0 . 147 . . Atlas-SNP ABAT 18 hgsc.bcm.edu hg19 16 8860122 8860122 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ABAT NM_001127448 exon9 c.A598T p.N200Y ATGATTAACCAGG . 73.0 42.0 85.0 0.0 . 46 . . Atlas-SNP TMC5 79838 hgsc.bcm.edu hg19 16 19468227 19468227 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TMC5 NM_024780 exon1 c.A199C p.N67H AAGGGTAACCAGG . 71.0 24.0 92.0 0.0 . 169 . . Atlas-SNP PDILT 204474 hgsc.bcm.edu hg19 16 20396093 20396093 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDILT NM_174924 exon3 c.G283A p.G95R CGATCCCATTCTT . 75.0 44.0 95.0 0.0 . 120 . . Atlas-SNP SCNN1G 6340 hgsc.bcm.edu hg19 16 23208731 23208731 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SCNN1G NM_001039 exon6 c.T1060A p.S354T GTCACCTCTATAG . 80.0 14.0 114.0 0.0 . 82 . . Atlas-SNP MVP 9961 hgsc.bcm.edu hg19 16 29847023 29847023 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MVP NM_017458 exon6 c.578-2A>T . TGGCCCAGGGGAA . 102.0 25.0 135.0 0.0 . 80 . . Atlas-SNP CD2BP2 10421 hgsc.bcm.edu hg19 16 30364546 30364546 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CD2BP2 NM_006110 exon6 c.G871T p.G291W CATCCCCCGTGTT . 113.0 26.0 126.0 0.0 . 30 . . Atlas-SNP TGFB1I1 7041 hgsc.bcm.edu hg19 16 31484780 31484780 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TGFB1I1 NM_001042454 exon2 c.T32C p.L11P CTGACCTGGAGAC . 30.0 8.0 42.0 0.0 . 60 . . Atlas-SNP ABCC12 94160 hgsc.bcm.edu hg19 16 48158122 48158122 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ABCC12 NM_033226 exon11 c.1587+2T>A . CAGCTTACCTGTC . 53.0 39.0 89.0 0.0 . 190 . . Atlas-SNP MT1M 4499 hgsc.bcm.edu hg19 16 56667700 56667700 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MT1M NM_176870 exon3 c.T132A p.C44X CAAGTGTGCCCAC . 26.0 8.0 41.0 0.0 . 13 . . Atlas-SNP CDH11 1009 hgsc.bcm.edu hg19 16 64981610 64981610 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDH11 NM_001797 exon13 c.A2287T p.T763S AATCTGTGGTGGC . 141.0 36.0 172.0 0.0 . 260 . . Atlas-SNP CMTM4 146223 hgsc.bcm.edu hg19 16 66656097 66656097 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CMTM4 NM_178818 exon4 c.A491T p.Y164F ACTGCATATGCCG . 45.0 29.0 70.0 0.0 . 19 . . Atlas-SNP FHOD1 29109 hgsc.bcm.edu hg19 16 67264347 67264347 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . FHOD1 NM_013241 exon19 c.T2921C p.M974T AACTGCATGATGC . 109.0 29.0 86.0 0.0 . 86 . . Atlas-SNP PLEKHG4 25894 hgsc.bcm.edu hg19 16 67319047 67319047 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 PLEKHG4,NS,carcinoma,0,1 PLEKHG4 NM_001129728 exon13 c.A2124T p.G708G GGCTGGAGGAGGT . 55.0 31.0 86.0 0.0 . 94 . . Atlas-SNP SLC7A6OS 84138 hgsc.bcm.edu hg19 16 68344261 68344261 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC7A6OS NM_032178 exon2 c.G448A p.A150T AGGCGGCTTCAGG . 134.0 33.0 145.0 0.0 . 22 . . Atlas-SNP OR1A2 26189 hgsc.bcm.edu hg19 17 3101071 3101071 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR1A2 NM_012352 exon1 c.T259A p.L87M CATCTCTTGGGGA . 85.0 30.0 149.0 0.0 . 52 . . Atlas-SNP ZNF594 84622 hgsc.bcm.edu hg19 17 5086891 5086891 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF594 NM_032530 exon2 c.A661T p.K221X TTCCCTTAAAAGC . 77.0 20.0 97.0 0.0 . 89 . . Atlas-SNP PITPNM3 83394 hgsc.bcm.edu hg19 17 6373607 6373607 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PITPNM3 NM_031220 exon13 c.A1746T p.T582T CACGTCTGTGGAC . 43.0 13.0 54.0 0.0 . 91 . . Atlas-SNP TXNDC17 84817 hgsc.bcm.edu hg19 17 6546320 6546320 + Missense_Mutation SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TXNDC17 NM_032731 exon4 c.T353G p.M118R TGGAAATGTTGTT . 81.0 9.0 95.0 0.0 . 10 . . Atlas-SNP TEKT1 83659 hgsc.bcm.edu hg19 17 6718508 6718508 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TEKT1 NM_053285 exon5 c.T603A p.S201S GTTCTCAGAATAT . 97.0 29.0 127.0 0.0 . 49 . . Atlas-SNP NEURL4 84461 hgsc.bcm.edu hg19 17 7227004 7227004 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NEURL4 NM_001005408 exon13 c.A2300T p.Q767L ATCTTCTGAATGA . 84.0 20.0 96.0 0.0 . 192 . . Atlas-SNP GUCY2D 3000 hgsc.bcm.edu hg19 17 7912843 7912843 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GUCY2D NM_000180 exon8 c.A1688T p.K563M GGCTGAAGAAATT . 86.0 26.0 125.0 0.0 . 82 . . Atlas-SNP MYH4 4622 hgsc.bcm.edu hg19 17 10357033 10357033 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYH4 NM_017533 exon23 c.T2861A p.L954H TTCTTGAGCTCTG . 141.0 30.0 146.0 0.0 . 349 . . Atlas-SNP MYH4 4622 hgsc.bcm.edu hg19 17 10357189 10357189 + Nonsense_Mutation SNP A A T rs138202203 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYH4 NM_017533 exon23 c.T2705A p.L902X TCAGCCAAGGCAT . 92.0 22.0 126.0 0.0 . 349 . A|1.000;G|0.000 Atlas-SNP MYH1 4619 hgsc.bcm.edu hg19 17 10409339 10409339 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYH1 NM_005963 exon18 c.T2046A p.T682T AGTTTTAGTTTCA . 208.0 49.0 204.0 0.0 . 403 . . Atlas-SNP BLMH 642 hgsc.bcm.edu hg19 17 28616480 28616480 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BLMH NM_000386 exon3 c.T232A p.C78S TCAGACAAGAAAA . 181.0 60.0 193.0 0.0 . 42 . . Atlas-SNP SLFN12 55106 hgsc.bcm.edu hg19 17 33738498 33738498 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLFN12 NM_018042 exon4 c.A1596T p.K532N AAGGGCTTTCAGC . 162.0 30.0 134.0 0.0 . 56 . . Atlas-SNP MYO19 80179 hgsc.bcm.edu hg19 17 34859822 34859822 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYO19 NM_001163735 exon21 c.C1944A p.T648T ATGGATGGTCTCC . 29.0 10.0 32.0 0.0 . 130 . . Atlas-SNP ARL5C 390790 hgsc.bcm.edu hg19 17 37313165 37313165 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARL5C NM_001143968 exon6 c.T522A p.S174S GGCCTGAGATTCC . 122.0 24.0 91.0 0.0 . 3 . . Atlas-SNP KRTAP9-3 83900 hgsc.bcm.edu hg19 17 39388765 39388765 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KRTAP9-3 NM_031962 exon1 c.T12A p.C4X CCACTGTTGCTCC . 248.0 35.0 191.0 0.0 . 11 . . Atlas-SNP KRT35 3886 hgsc.bcm.edu hg19 17 39635249 39635249 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KRT35 NM_002280 exon5 c.712-2A>T . ACTTCCTATAGCA . 81.0 7.0 73.0 0.0 . 58 . . Atlas-SNP CRHR1 1394 hgsc.bcm.edu hg19 17 43893924 43893924 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CRHR1 NM_001145148 exon3 c.T217A p.Y73N TTTTTCTATGGTG . 77.0 19.0 54.0 0.0 . 48 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45888020 45888020 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OSBPL7 NM_145798 exon18 c.A1820T p.K607M CAGAACTTGTTCT . 125.0 28.0 110.0 0.0 . 65 . . Atlas-SNP HOXB8 3218 hgsc.bcm.edu hg19 17 46691811 46691811 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HOXB8 NM_024016 exon1 c.T256A p.Y86N AGCCGTAGAAATT . 113.0 24.0 106.0 0.0 . 26 . . Atlas-SNP WFIKKN2 124857 hgsc.bcm.edu hg19 17 48917022 48917022 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . WFIKKN2 NM_175575 exon2 c.A373T p.I125F TGTGACATCTGGG . 144.0 44.0 179.0 0.0 . 69 . . Atlas-SNP TRIM25 7706 hgsc.bcm.edu hg19 17 54981763 54981763 + Silent SNP T T A rs200224902 by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRIM25 NM_005082 exon3 c.A780T p.T260T CTTCCTTGTCGAG . 125.0 32.0 101.0 0.0 . 52 . T|1.000;C|0.000 Atlas-SNP CEP112 201134 hgsc.bcm.edu hg19 17 64059102 64059102 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CEP112 NM_001199165 exon11 c.A1053T p.L351L ATTATTTAGAGAT . 68.0 6.0 67.0 0.0 . 192 . . Atlas-SNP TNRC6C 57690 hgsc.bcm.edu hg19 17 76047470 76047470 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TNRC6C NM_018996 exon4 c.A2327T p.E776V GGGTCGAGACGCC . 101.0 21.0 88.0 0.0 . 173 . . Atlas-SNP CYTH1 9267 hgsc.bcm.edu hg19 17 76677126 76677126 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CYTH1 NM_004762 exon12 c.892-2A>T . TTATCCTACAGAA . 133.0 27.0 86.0 0.0 . 36 . . Atlas-SNP SLC38A10 124565 hgsc.bcm.edu hg19 17 79256084 79256084 + Missense_Mutation SNP T T A rs146598954 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SLC38A10 NM_001037984 exon5 c.A406T p.I136F GCACGATGCACAG . 243.0 46.0 196.0 0.0 . 133 . T|0.995;C|0.005 Atlas-SNP ARHGDIA 396 hgsc.bcm.edu hg19 17 79826836 79826836 + Missense_Mutation SNP G G C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARHGDIA NM_004309 exon6 c.C531G p.I177M GGACTTGATGCTG . 87.0 9.0 80.0 0.0 . 14 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3067424 3067424 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYOM1 NM_003803 exon38 c.A4894T p.T1632S TGATGGTGAAGTA . 65.0 27.0 144.0 0.0 . 192 . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3086130 3086130 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYOM1 NM_003803 exon30 c.A4157T p.E1386V TGAGTCTCCTTCT . 52.0 16.0 63.0 0.0 . 192 . . Atlas-SNP DLGAP1 9229 hgsc.bcm.edu hg19 18 3880047 3880047 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DLGAP1 NM_001242761 exon4 c.C22T p.R8C GGCTGCGGCTGCC . 11.0 5.0 23.0 0.0 . 201 . . Atlas-SNP EPB41L3 23136 hgsc.bcm.edu hg19 18 5423442 5423442 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 EPB41L3,colon,carcinoma,0,2 EPB41L3 NM_012307 exon11 c.G1274A p.R425H GCTGGGCGATCTA . 118.0 33.0 166.0 0.0 . 222 . . Atlas-SNP ANKRD12 23253 hgsc.bcm.edu hg19 18 9258388 9258388 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANKRD12 NM_015208 exon9 c.A5123T p.H1708L AAATGCATAAATA . 57.0 22.0 111.0 0.0 . 167 . . Atlas-SNP IMPACT 55364 hgsc.bcm.edu hg19 18 22017984 22017984 + Missense_Mutation SNP A A G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IMPACT NM_018439 exon5 c.A347G p.K116R TACAAAAATCTCA . 298.0 108.0 522.0 0.0 . 37 . . Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30913332 30913332 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001105528 exon9 c.A685T p.I229L ATTCTATAACATC . 26.0 8.0 53.0 0.0 . . . . Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30926215 30926215 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001105528 exon8 c.A618T p.S206S CCAGACTGACCAA . 66.0 25.0 132.0 0.0 . . . . Atlas-SNP NOL4 8715 hgsc.bcm.edu hg19 18 31523123 31523123 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NOL4 NM_003787 exon9 c.A1448T p.H483L GTAAGGTGGGAAG . 34.0 11.0 72.0 0.0 . 139 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44068976 44068976 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LOXHD1 NM_144612 exon37 c.C5822A p.A1941D GCACAGGCAAAGT . 47.0 19.0 70.0 0.0 . 367 . . Atlas-SNP BSG 682 hgsc.bcm.edu hg19 19 579507 579507 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BSG NM_001728 exon3 c.A423T p.T141T CGGCACAGTCTTC . 69.0 18.0 82.0 0.0 . 48 . . Atlas-SNP PRSS57 400668 hgsc.bcm.edu hg19 19 691985 691985 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRSS57 NM_214710 exon3 c.T254A p.L85Q ACCACCAGGCCAG . 74.0 24.0 95.0 0.0 . 18 . . Atlas-SNP ZFR2 23217 hgsc.bcm.edu hg19 19 3823272 3823272 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZFR2 NM_015174 exon8 c.A1343T p.Q448L ACCGGCTGCGCAT . 41.0 11.0 66.0 0.0 . 63 . . Atlas-SNP FUT5 2527 hgsc.bcm.edu hg19 19 5867550 5867550 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 FUT5,NS,adenocarcinoma,0,1 FUT5 NM_002034 exon2 c.C187T p.R63C GGCAGCGGGACCC . 116.0 33.0 99.0 1.0 . 29 . . Atlas-SNP CLPP 8192 hgsc.bcm.edu hg19 19 6366366 6366366 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CLPP NM_006012 exon5 c.A653T p.Q218L GCCTGCAGGTGAT . 46.0 12.0 88.0 0.0 . 15 . . Atlas-SNP PNPLA6 10908 hgsc.bcm.edu hg19 19 7625969 7625969 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PNPLA6 NM_001166111 exon32 c.A3916T p.S1306C CCCACGAGCTATG . 50.0 26.0 56.0 0.0 . 163 . . Atlas-SNP PRAM1 84106 hgsc.bcm.edu hg19 19 8563756 8563756 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRAM1 NM_032152 exon2 c.C936T p.A312A GAATTCGGCCGGC . 105.0 35.0 79.0 0.0 . 53 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9061256 9061256 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MUC16 NM_024690 exon3 c.T26190A p.S8730S CATTCCAGAAAGA . 99.0 35.0 121.0 0.0 . 4315 . . Atlas-SNP TNPO2 30000 hgsc.bcm.edu hg19 19 12821577 12821577 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TNPO2 NM_013433 exon12 c.A1128T p.S376S AGCCGCTGAGCAC . 82.0 21.0 66.0 0.0 . 108 . . Atlas-SNP NDUFB7 4713 hgsc.bcm.edu hg19 19 14677729 14677729 + Missense_Mutation SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NDUFB7 NM_004146 exon2 c.G129T p.Q43H CTCCTGCTGTGTG . 27.0 10.0 31.0 0.0 . 14 . . Atlas-SNP OR7A17 26333 hgsc.bcm.edu hg19 19 14991448 14991448 + Silent SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . OR7A17 NM_030901 exon1 c.C720A p.T240T TGCACAGGTGGAA . 84.0 22.0 111.0 0.0 . 37 . . Atlas-SNP MYO9B 4650 hgsc.bcm.edu hg19 19 17256246 17256246 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MYO9B NM_001130065 exon3 c.A880T p.S294C AACTCCAGCCGGT . 104.0 32.0 120.0 0.0 . 264 . . Atlas-SNP RPL18A 6142 hgsc.bcm.edu hg19 19 17973829 17973829 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RPL18A NM_000980 exon4 c.A431T p.Q144L TCAAGCAGTTCCA . 95.0 35.0 90.0 0.0 . 15 . . Atlas-SNP SLC5A5 6528 hgsc.bcm.edu hg19 19 17988625 17988625 + Silent SNP G G T rs148887708 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 SLC5A5,colon,carcinoma,0,2 SLC5A5 NM_000453 exon6 c.G792T p.A264A CCAGGCGCAGGTG . 88.0 30.0 76.0 1.0 . 67 . G|1.000;T|0.000 Atlas-SNP COMP 1311 hgsc.bcm.edu hg19 19 18899478 18899478 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . COMP NM_000095 exon7 c.T685A p.C229S CGGGGCAGAAGCG . 39.0 13.0 52.0 0.0 . 62 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22156559 22156559 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF208 NM_007153 exon4 c.A1277T p.K426I TCACATTTGTAGG . 77.0 21.0 93.0 0.0 . 817 . . Atlas-SNP ZNF728 388523 hgsc.bcm.edu hg19 19 23171133 23171133 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_001267716 exon2 c.T124A p.F42I CCAGGAAGACCAG . 72.0 14.0 98.0 0.0 . . . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 38964354 38964354 + Missense_Mutation SNP A A T rs185821937 by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . RYR1 NM_001042723 exon28 c.A4103T p.Q1368L AGGCGCAGCCCGC . 250.0 73.0 284.0 0.0 . 708 . A|1.000;C|0.000 Atlas-SNP CEACAM5 1048 hgsc.bcm.edu hg19 19 42223902 42223902 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CEACAM5 NM_004363 exon7 c.A1546T p.K516X GAGGACAAGGATG . 72.0 18.0 109.0 0.0 . 84 . . Atlas-SNP CEACAM3 1084 hgsc.bcm.edu hg19 19 42312947 42312947 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CEACAM3 NM_001815 exon3 c.T521A p.L174Q GTTTCCTGCTCCT . 83.0 14.0 109.0 0.0 . 37 . . Atlas-SNP CEACAM1 634 hgsc.bcm.edu hg19 19 43026217 43026217 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CEACAM1 NM_001184816 exon3 c.A562T p.S188C TGGGACTGACCGG . 86.0 25.0 112.0 0.0 . 43 . . Atlas-SNP PSG6 5675 hgsc.bcm.edu hg19 19 43414973 43414973 + Missense_Mutation SNP T T A rs1058674 byhapmap;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PSG6 NM_001031850 exon3 c.A465T p.L155F GGGGTTTAAGTTG . 59.0 16.0 100.0 0.0 . 89 . T|1.000;|0.000 Atlas-SNP PSG2 5670 hgsc.bcm.edu hg19 19 43576010 43576010 + Missense_Mutation SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PSG2 NM_031246 exon4 c.C806T p.A269V TACTGTGCCGGTG . 135.0 40.0 136.0 0.0 . 84 . . Atlas-SNP MARK4 57787 hgsc.bcm.edu hg19 19 45790824 45790824 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MARK4 NM_001199867 exon13 c.A1396T p.S466C AGTGGGAGTCGAG . 300.0 93.0 359.0 0.0 . 132 . . Atlas-SNP GLTSCR1 29998 hgsc.bcm.edu hg19 19 48182982 48182982 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GLTSCR1 NM_015711 exon6 c.G555T p.Q185H GCCCCAGGACGTG . 49.0 9.0 62.0 0.0 . 79 . . Atlas-SNP GLTSCR1 29998 hgsc.bcm.edu hg19 19 48182983 48182983 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GLTSCR1 NM_015711 exon6 c.G556T p.D186Y CCCCAGGACGTGG . 48.0 8.0 62.0 0.0 . 79 . . Atlas-SNP SCAF1 58506 hgsc.bcm.edu hg19 19 50156008 50156008 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SCAF1 NM_021228 exon7 c.A2362T p.R788W AGGGACAGGGACA . 114.0 28.0 116.0 0.0 . 78 . . Atlas-SNP SIGLEC11 114132 hgsc.bcm.edu hg19 19 50453402 50453402 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SIGLEC11 NM_052884 exon11 c.A1922T p.E641V TGGAGCTCCTGCT . 64.0 21.0 68.0 0.0 . 70 . . Atlas-SNP IZUMO2 126123 hgsc.bcm.edu hg19 19 50662761 50662761 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IZUMO2 NM_152358 exon3 c.T384A p.Y128X TAATTCATATGAA . 193.0 63.0 217.0 0.0 . 26 . . Atlas-SNP KLK10 5655 hgsc.bcm.edu hg19 19 51520376 51520376 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KLK10 NM_145888 exon3 c.T259A p.C87S TTCCGCAGTGCGC . 138.0 36.0 126.0 0.0 . 32 . . Atlas-SNP ZNF615 284370 hgsc.bcm.edu hg19 19 52497458 52497458 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF615 NM_001199324 exon7 c.A904T p.S302C ATTGGCTACATGT . 52.0 16.0 67.0 0.0 . 111 . . Atlas-SNP ZNF415 55786 hgsc.bcm.edu hg19 19 53611940 53611940 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF415 NM_018355 exon4 c.C1358A p.S453X AAGTTCGAATGCA . 100.0 21.0 91.0 0.0 . 68 . . Atlas-SNP ZNF665 79788 hgsc.bcm.edu hg19 19 53668306 53668306 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZNF665 NM_024733 exon4 c.T1437A p.I479I AGAATGAATTCCC . 63.0 21.0 79.0 0.0 . 136 . . Atlas-SNP PRKCG 5582 hgsc.bcm.edu hg19 19 54401692 54401692 + Splice_Site SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PRKCG NM_002739 exon11 c.1093-2A>T . GCGCATAGGTGAT . 151.0 46.0 163.0 0.0 . 246 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55512159 55512159 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NLRP2 NM_017852 exon13 c.A3082T p.N1028Y GAACTCAATAAGC . 88.0 19.0 92.0 0.0 . 161 . . Atlas-SNP NRSN2 80023 hgsc.bcm.edu hg19 20 333979 333979 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NRSN2 NM_024958 exon4 c.A315T p.A105A GCGGGCAGCCGAC . 97.0 18.0 79.0 0.0 . 20 . . Atlas-SNP ANKEF1 63926 hgsc.bcm.edu hg19 20 10033917 10033917 + Silent SNP A A G rs199615882 TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_198798 exon8 c.A2028G p.K676K TAAGAAAGAAGAG . 165.0 68.0 126.0 0.0 . . . A|0.999;G|0.001 Atlas-SNP SUN5 140732 hgsc.bcm.edu hg19 20 31572988 31572988 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SUN5 NM_080675 exon12 c.A901T p.M301L CCTCCATGCCCTG . 106.0 18.0 109.0 0.0 . 63 . . Atlas-SNP BPIFA1 51297 hgsc.bcm.edu hg19 20 31829908 31829908 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . . NM_016583 exon7 c.T713A p.L238Q TCACCCTGGTGCA . 69.0 9.0 85.0 0.0 . . . . Atlas-SNP EMILIN3 90187 hgsc.bcm.edu hg19 20 39993757 39993757 + Missense_Mutation SNP T T G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . EMILIN3 NM_052846 exon2 c.A208C p.I70L GTAGGATGCAGGT . 68.0 12.0 75.0 0.0 . 63 . . Atlas-SNP CHD6 84181 hgsc.bcm.edu hg19 20 40127977 40127977 + Silent SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CHD6 NM_032221 exon6 c.A873T p.A291A GATGTTTGCATCA . 62.0 8.0 41.0 0.0 . 312 . . Atlas-SNP BCAS1 8537 hgsc.bcm.edu hg19 20 52601945 52601945 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BCAS1 NM_003657 exon7 c.A1021T p.K341X ATCCTTTGGAATT . 218.0 56.0 159.0 0.0 . 77 . . Atlas-SNP ZBP1 81030 hgsc.bcm.edu hg19 20 56188317 56188317 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ZBP1 NM_001160419 exon5 c.A572T p.Q191L CCATTCTGGCAGA . 82.0 17.0 71.0 0.0 . 65 . . Atlas-SNP LAMA5 3911 hgsc.bcm.edu hg19 20 60909582 60909582 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . LAMA5 NM_005560 exon21 c.A2578T p.S860C ACTCGCTGCAGGT . 115.0 25.0 117.0 0.0 . 268 . . Atlas-SNP DIDO1 11083 hgsc.bcm.edu hg19 20 61537425 61537425 + Nonsense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DIDO1 NM_080797 exon6 c.A1402T p.K468X GTCTCTTGTGCAC . 29.0 6.0 41.0 0.0 . 321 . . Atlas-SNP SAMSN1 64092 hgsc.bcm.edu hg19 21 15954542 15954542 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SAMSN1 NM_001256370 exon2 c.T176A p.V59D GGTCCAACTTGTG . 61.0 24.0 127.0 0.0 . 112 . . Atlas-SNP JAM2 58494 hgsc.bcm.edu hg19 21 27062287 27062287 + Splice_Site SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . JAM2 NM_021219 exon3 c.241+2T>C . TCAAGGTAAGCAG . 32.0 9.0 70.0 0.0 . 33 . . Atlas-SNP APP 351 hgsc.bcm.edu hg19 21 27269958 27269958 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . APP NM_000484 exon16 c.A1991T p.E664V ATCTCCTCCGTCT . 45.0 12.0 104.0 0.0 . 90 . . Atlas-SNP PDE9A 5152 hgsc.bcm.edu hg19 21 44192597 44192597 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDE9A NM_002606 exon19 c.A1735T p.R579X AAGTCCAGAGAGA . 56.0 25.0 94.0 0.0 . 69 . . Atlas-SNP CDC45 8318 hgsc.bcm.edu hg19 22 19495303 19495303 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CDC45 NM_001178010 exon13 c.A1067T p.Q356L TGAAGCAGGTGAA . 63.0 26.0 100.0 0.0 . 48 . . Atlas-SNP GGT5 2687 hgsc.bcm.edu hg19 22 24629895 24629895 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GGT5 NM_001099782 exon2 c.A251T p.Q84L ATGCTCTGAGGGT . 67.0 28.0 120.0 0.0 . 61 . . Atlas-SNP PLA2G3 50487 hgsc.bcm.edu hg19 22 31536135 31536135 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 .,2 PLA2G3 NM_015715 exon1 c.A206T p.Q69L CATGACTGCAGCC . 34.0 14.0 43.0 0.0 . 85 . . Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32293526 32293526 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DEPDC5 NM_001242896 exon40 c.A4262T p.E1421V TTTTGGAGGGGCC . 65.0 22.0 110.0 0.0 . 266 . . Atlas-SNP CSF2RB 1439 hgsc.bcm.edu hg19 22 37318309 37318309 + Silent SNP C C T rs200588212 bycluster;by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CSF2RB NM_000395 exon2 c.C60T p.S20S GCGCAGCCTGGCA . 77.0 28.0 108.0 0.0 . 104 . C|0.999;A|0.001 Atlas-SNP PICK1 9463 hgsc.bcm.edu hg19 22 38461007 38461007 + Splice_Site SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PICK1 NM_012407 exon4 c.154-2A>C . ACCCACAGGTATT . 66.0 23.0 135.0 0.0 . 30 . . Atlas-SNP PARVB 29780 hgsc.bcm.edu hg19 22 44547368 44547368 + Silent SNP C C A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PARVB NM_001003828 exon11 c.C879A p.L293L GTCTCTCATCACT . 38.0 15.0 92.0 0.0 . 44 . . Atlas-SNP IL17REL 400935 hgsc.bcm.edu hg19 22 50439576 50439576 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IL17REL NM_001001694 exon4 c.T44A p.M15K CACTGCATGGCAG . 103.0 41.0 153.0 0.0 . 21 . . Atlas-SNP ASMTL 8623 hgsc.bcm.edu hg19 X 1531641 1531641 + Silent SNP G G A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ASMTL NM_004192 exon12 c.C1629T p.A543A GCTCTCGGCGACC . 501.0 96.0 715.0 1.0 . 56 . . Atlas-SNP ARHGAP6 395 hgsc.bcm.edu hg19 X 11204488 11204488 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ARHGAP6 NM_006125 exon5 c.T1141A p.L381I GTTGTAAAGCTTC . 62.0 31.0 67.0 0.0 . 130 . . Atlas-SNP TLR7 51284 hgsc.bcm.edu hg19 X 12906214 12906214 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TLR7 NM_016562 exon3 c.T2587A p.Y863N CACCTCTATTTCT . 94.0 52.0 62.0 0.0 . 125 . . Atlas-SNP BEND2 139105 hgsc.bcm.edu hg19 X 18183181 18183181 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . BEND2 NM_153346 exon14 c.T2348A p.L783Q TGCTCCAGCTCTG . 46.0 20.0 39.0 0.0 . 108 . . Atlas-SNP MAP3K15 389840 hgsc.bcm.edu hg19 X 19418698 19418698 + Nonsense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MAP3K15 NM_001001671 exon14 c.T1928A p.L643X ACCTCCAAGGTGT . 25.0 6.0 19.0 0.0 . 108 . . Atlas-SNP POLA1 5422 hgsc.bcm.edu hg19 X 24757522 24757522 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . POLA1 NM_016937 exon20 c.A2053T p.T685S AATGCTACCTGTG . 134.0 54.0 126.0 0.0 . 117 . . Atlas-SNP SHROOM4 57477 hgsc.bcm.edu hg19 X 50377203 50377203 + Missense_Mutation SNP G G T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SHROOM4 NM_020717 exon4 c.C1870A p.Q624K GCTCCTGGGTCTC . 75.0 68.0 79.0 0.0 . 171 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53674399 53674399 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HUWE1 NM_031407 exon6 c.A263G p.Q88R TTCAGTTGCTCTC . 126.0 106.0 132.0 0.0 . 724 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53674402 53674402 + Missense_Mutation SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HUWE1 NM_031407 exon6 c.A260G p.E87G AGTTGCTCTCTTT . 124.0 103.0 132.0 0.0 . 724 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53674404 53674404 + Silent SNP T T C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . HUWE1 NM_031407 exon6 c.A258G p.R86R TTGCTCTCTTTCT . 125.0 104.0 133.0 0.0 . 724 . . Atlas-SNP TEX11 56159 hgsc.bcm.edu hg19 X 70072999 70072999 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TEX11 NM_001003811 exon8 c.T455A p.L152Q TGCTCCAGACTCT . 82.0 25.0 60.0 0.0 . 132 . . Atlas-SNP ATRX 546 hgsc.bcm.edu hg19 X 76872153 76872153 + Missense_Mutation SNP C C G novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATRX NM_000489 exon22 c.G5494C p.E1832Q CATATTCGTGTTT . 139.0 121.0 101.0 0.0 . 833 . . Atlas-SNP CENPI 2491 hgsc.bcm.edu hg19 X 100402946 100402946 + Silent SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CENPI NM_006733 exon19 c.C1890T p.F630F AGAGTTCAATTTC . 149.0 67.0 144.0 0.0 . 70 . . Atlas-SNP CENPI 2491 hgsc.bcm.edu hg19 X 100402947 100402947 + Missense_Mutation SNP A A C novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . CENPI NM_006733 exon19 c.A1891C p.N631H GAGTTCAATTTCA . 149.0 66.0 146.0 0.0 . 70 . . Atlas-SNP NXF3 56000 hgsc.bcm.edu hg19 X 102338424 102338424 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NXF3 NM_022052 exon5 c.T442A p.Y148N TTTCATAGTGAAA . 78.0 37.0 69.0 0.0 . 81 . . Atlas-SNP ESX1 80712 hgsc.bcm.edu hg19 X 103499021 103499021 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ESX1 NM_153448 exon2 c.A320T p.K107M TCTTGCTTCAGCT . 69.0 28.0 70.0 0.0 . 57 . . Atlas-SNP IL1RAPL2 26280 hgsc.bcm.edu hg19 X 105011036 105011036 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . IL1RAPL2 NM_017416 exon11 c.A1443T p.R481S TCTCAGACGGGGA . 234.0 104.0 198.0 0.0 . 105 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107823970 107823970 + Splice_Site SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . COL4A5 NM_033380 exon15 c.891+2T>A . AAAGAGTAAGTGA . 300.0 130.0 273.0 0.0 . 262 . . Atlas-SNP GUCY2F 2986 hgsc.bcm.edu hg19 X 108631785 108631785 + Silent SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GUCY2F NM_001522 exon15 c.T2889A p.S963S GCCCACAGAGCTC . 127.0 50.0 96.0 0.0 . 178 . . Atlas-SNP KIAA1210 57481 hgsc.bcm.edu hg19 X 118230582 118230582 + Missense_Mutation SNP T T A novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . KIAA1210 NM_020721 exon8 c.A1141T p.S381C TGCTACTGGTAGA . 121.0 61.0 100.0 0.0 . 171 . . Atlas-SNP GPR112 139378 hgsc.bcm.edu hg19 X 135431162 135431162 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GPR112 NM_153834 exon6 c.A5297T p.Q1766L ATATTCAGGTTTC . 118.0 53.0 94.0 0.0 . 459 . . Atlas-SNP GPR101 83550 hgsc.bcm.edu hg19 X 136113821 136113821 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . GPR101 NM_054021 exon1 c.T13A p.C5S TGGTGCAGGTGGA . 20.0 9.0 23.0 0.0 . 96 . . Atlas-SNP ATP2B3 492 hgsc.bcm.edu hg19 X 152845550 152845550 + Missense_Mutation SNP A A T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ATP2B3 NM_001001344 exon20 c.A3457T p.T1153S GACTACACCCACA . 140.0 59.0 119.0 0.0 . 552 . . Atlas-SNP DNASE1L1 1774 hgsc.bcm.edu hg19 X 153631374 153631374 + Missense_Mutation SNP C C T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . DNASE1L1 NM_006730 exon7 c.G683A p.R228H ACGACGCGGTCAT . 53.0 47.0 47.0 0.0 . 20 . . Atlas-SNP PDRG1 81572 hgsc.bcm.edu hg19 20 30539689 30539689 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . PDRG1 NM_030815 exon1 c.77delA p.D26fs . . 159.0 36.0 150.0 0.0 . 17 . . Atlas-Indel,Pindel API5 8539 hgsc.bcm.edu hg19 11 43350345 43350346 + Frame_Shift_Ins INS - - TA novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . API5 NM_006595 exon9 c.1029_1030insTA p.V343fs . . 217.0 53.0 278.0 0.0 . 91 . . Atlas-Indel,Pindel ANXA9 8416 hgsc.bcm.edu hg19 1 150956826 150956826 + Frame_Shift_Del DEL C C - novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANXA9 NM_003568 exon6 c.336delG p.Q112fs . . 177.0 23.0 109.0 0.0 . 28 . . Atlas-INDEL TRIM60 166655 hgsc.bcm.edu hg19 4 165962511 165962511 + Frame_Shift_Del DEL T T - novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . TRIM60 NM_152620 exon3 c.1286delA p.Y429fs . . 71.0 30.0 97.0 0.0 . 73 . . Atlas-Indel,Pindel MDM1 56890 hgsc.bcm.edu hg19 12 68715351 68715352 + Frame_Shift_Ins INS - - T novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . MDM1 NM_017440 exon6 c.859_860insA p.H287fs . . 93.0 23.0 108.0 0.0 . 74 . . Atlas-Indel,Pindel NASP 4678 hgsc.bcm.edu hg19 1 46078848 46078855 + Frame_Shift_Del DEL AGGCTCAG AGGCTCAG - novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 AGGCTCAG AGGCTCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . NASP NM_002482 exon7 c.1433_1440del p.478_480del . . 23.0 17.0 75.0 0.0 . 77 . . Atlas-Indel,Pindel SIPA1 6494 hgsc.bcm.edu hg19 11 65417088 65417111 + In_Frame_Del DEL CCACCACAGCCAAGCCATCAGTAC CCACCACAGCCAAGCCATCAGTAC - rs137989252 by1000genomes;alternate_allele TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 CCACCACAGCCAAGCCATCAGTAC CCACCACAGCCAAGCCATCAGTAC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . SIPA1 NM_006747 exon11 c.2581_2604del p.861_868del . . 36.0 10.0 65.0 0.0 . 45 . . Atlas-Indel,Pindel ANXA9 8416 hgsc.bcm.edu hg19 1 150956828 150956829 + Frame_Shift_Del DEL CA CA - novel TCGA-DD-AAC8-01A-11D-A40R-10 TCGA-DD-AAC8-10A-01D-A40U-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7b3c3428-4aba-4f50-ab9e-852dbd0e4141 b7eb2f91-437b-4009-bda9-315bd19c65e2 . ANXA9 NM_003568 exon6 c.338_339del p.113_113del . . 175.0 19.0 108.0 0.0 . 28 . . Pindel