Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KCNA3 3738 hgsc.bcm.edu hg19 1 111217151 111217151 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . KCNA3 NM_002232 exon1 c.C281A p.P94Q GCGGCCGGCAGTG . 99.0 4.0 103.0 0.0 . 91 . . Atlas-SNP TCHH 7062 hgsc.bcm.edu hg19 1 152084323 152084323 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . TCHH NM_007113 exon3 c.G1370T p.W457L TTCAGCCAATCGC . 56.0 10.0 44.0 0.0 . 275 . . Atlas-SNP DCST1 149095 hgsc.bcm.edu hg19 1 155011941 155011941 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . DCST1 NM_152494 exon5 c.C325T p.P109S CTAGTACCCAAGA . 111.0 6.0 70.0 0.0 . 69 . . Atlas-SNP ARHGAP30 257106 hgsc.bcm.edu hg19 1 161018501 161018501 + Silent SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ARHGAP30 NM_001025598 exon12 c.G2310A p.E770E CCCTTGCTCTAGG . 189.0 135.0 122.0 0.0 . 105 . . Atlas-SNP SLC30A1 7779 hgsc.bcm.edu hg19 1 211751728 211751728 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 SLC30A1,NS,carcinoma,0,1 SLC30A1 NM_021194 exon1 c.G227T p.R76L TCGGCTCGGATCC . 212.0 148.0 167.0 0.0 . 27 . . Atlas-SNP RAB3GAP2 25782 hgsc.bcm.edu hg19 1 220340743 220340743 + Splice_Site SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . RAB3GAP2 NM_012414 exon27 c.2981-2A>G . TAAGTCTGAAAGT . 267.0 183.0 183.0 1.0 . 120 . . Atlas-SNP HIST3H2A 92815 hgsc.bcm.edu hg19 1 228645397 228645397 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HIST3H2A NM_033445 exon1 c.C122T p.S41L CGCTCCGAATAGT . 324.0 18.0 175.0 0.0 . 13 . . Atlas-SNP CEP170 9859 hgsc.bcm.edu hg19 1 243354614 243354614 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . CEP170 NM_001042405 exon8 c.A814T p.I272L CTGTTATATGGGA . 167.0 108.0 117.0 0.0 . 153 . . Atlas-SNP RPS27A 6233 hgsc.bcm.edu hg19 2 55460543 55460543 + Silent SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . RPS27A NM_001135592 exon3 c.G93A p.Q31Q GATCCAGGATAAG . 92.0 4.0 99.0 0.0 . 12 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 263.0 19.0 186.0 0.0 . 384 . . Atlas-SNP SLC9A2 6549 hgsc.bcm.edu hg19 2 103236548 103236548 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . SLC9A2 NM_003048 exon1 c.C241A p.P81T CAGATCCCCTTCG . 211.0 67.0 196.0 0.0 . 112 . . Atlas-SNP PSD4 23550 hgsc.bcm.edu hg19 2 113940649 113940649 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PSD4 NM_012455 exon2 c.C616T p.P206S AGCCCACCTGAGA . 72.0 5.0 78.0 0.0 . 74 . . Atlas-SNP COL4A4 1286 hgsc.bcm.edu hg19 2 227919329 227919329 + Silent SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . COL4A4 NM_000092 exon31 c.G2841T p.R947R CAGTCCCCGGTCT . 152.0 9.0 123.0 0.0 . 215 . . Atlas-SNP NEU2 4759 hgsc.bcm.edu hg19 2 233897434 233897434 + Missense_Mutation SNP A A T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . NEU2 NM_005383 exon1 c.A53T p.H18L GAGCCCATGCCTA . 125.0 30.0 128.0 0.0 . 42 . . Atlas-SNP MYH15 22989 hgsc.bcm.edu hg19 3 108179187 108179187 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . MYH15 NM_014981 exon18 c.A1952T p.K651M CCTTTCTTTCGTT . 283.0 20.0 269.0 0.0 . 223 . . Atlas-SNP VWA5B2 90113 hgsc.bcm.edu hg19 3 183959046 183959046 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . VWA5B2 NM_138345 exon18 c.G3034A p.D1012N TTGGGGGACCCTG . 178.0 16.0 166.0 0.0 . 47 . . Atlas-SNP ACOX3 8310 hgsc.bcm.edu hg19 4 8418225 8418225 + Silent SNP G G A rs146635266 TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ACOX3 NM_001101667 exon2 c.C24T p.G8G TGTGTCGCCTCCT . 112.0 32.0 80.0 0.0 . 70 . G|1.000;A|0.000 Atlas-SNP MMRN1 22915 hgsc.bcm.edu hg19 4 90856570 90856570 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . MMRN1 NM_007351 exon6 c.C1739A p.S580Y CCGTCTCTTTGGA . 193.0 45.0 215.0 0.0 . 174 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123260512 123260512 + Missense_Mutation SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . KIAA1109 NM_015312 exon70 c.A12301G p.N4101D GGAGGTAATGCTA . 162.0 46.0 157.0 0.0 . 424 . . Atlas-SNP ARHGAP10 79658 hgsc.bcm.edu hg19 4 148743969 148743969 + Missense_Mutation SNP C C G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ARHGAP10 NM_024605 exon2 c.C246G p.C82W ACGATGCATAGGT . 203.0 38.0 156.0 0.0 . 92 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66460639 66460639 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 .,1 MAST4 NM_001164664 exon29 c.C5632T p.P1878S TTCCTGCCCCCCA . 103.0 19.0 86.0 0.0 . 218 . . Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115327845 115327845 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . . NM_173800 exon5 c.C1131A p.D377E TTTTGACAACCAT . 114.0 23.0 109.0 0.0 . . . . Atlas-SNP RAPGEF6 51735 hgsc.bcm.edu hg19 5 130797637 130797637 + Silent SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . RAPGEF6 NM_001164387 exon20 c.G2640A p.L880L ACGAAACAAATCA . 146.0 46.0 124.0 0.0 . 361 . . Atlas-SNP KLHL3 26249 hgsc.bcm.edu hg19 5 136974747 136974747 + Missense_Mutation SNP C C G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . KLHL3 NM_017415 exon10 c.G1114C p.D372H ACTGGTCCTTCAC . 87.0 7.0 77.0 0.0 . 54 . . Atlas-SNP HBEGF 1839 hgsc.bcm.edu hg19 5 139714267 139714267 + Silent SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HBEGF NM_001945 exon5 c.C621T p.S207S TCAGTGGGAATTA . 108.0 5.0 99.0 0.0 . 12 . . Atlas-SNP ARAP3 64411 hgsc.bcm.edu hg19 5 141034964 141034964 + Nonsense_Mutation SNP G G A rs372420144 TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ARAP3 NM_022481 exon32 c.C4114T p.R1372X GTAGTCGCCGCTG . 197.0 55.0 172.0 0.0 . 139 . . Atlas-SNP PTTG1 9232 hgsc.bcm.edu hg19 5 159855662 159855662 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PTTG1 NM_004219 exon6 c.C583A p.P195T TTGCCACCTGTTT . 75.0 10.0 66.0 0.0 . 15 . . Atlas-SNP FARS2 10667 hgsc.bcm.edu hg19 6 5369227 5369227 + Missense_Mutation SNP G G A rs145555213 TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FARS2 NM_006567 exon2 c.G424A p.D142N AAGGGGGACAACT . 763.0 183.0 752.0 1.0 . 33 . G|1.000;A|0.000 Atlas-SNP HSD17B8 7923 hgsc.bcm.edu hg19 6 33172866 33172866 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HSD17B8 NM_014234 exon2 c.G240T p.R80S GGCCAGGGCCGCC . 68.0 20.0 57.0 0.0 . 20 . . Atlas-SNP ARMC12 221481 hgsc.bcm.edu hg19 6 35715163 35715163 + Silent SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . . NM_145028 exon4 c.G651T p.V217V ACGGGTGATGCCT . 87.0 25.0 72.0 0.0 . . . . Atlas-SNP SENP6 26054 hgsc.bcm.edu hg19 6 76344460 76344460 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . SENP6 NM_001100409 exon5 c.G391T p.V131L GGAACTGTAGTTC . 122.0 29.0 84.0 0.0 . 189 . . Atlas-SNP MDN1 23195 hgsc.bcm.edu hg19 6 90460121 90460121 + Missense_Mutation SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . MDN1 NM_014611 exon24 c.A3358G p.I1120V AACCAATGTACTC . 122.0 39.0 121.0 0.0 . 478 . . Atlas-SNP FSCN1 6624 hgsc.bcm.edu hg19 7 5633032 5633032 + Silent SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FSCN1 NM_003088 exon1 c.G465A p.L155L GCACCTGAGCGCG . 244.0 74.0 200.0 0.0 . 29 . . Atlas-SNP SEMA3C 10512 hgsc.bcm.edu hg19 7 80374511 80374511 + Missense_Mutation SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . SEMA3C NM_006379 exon18 c.A1955G p.Q652R ATGGTCTGCTTGA . 116.0 24.0 126.0 0.0 . 106 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83610774 83610774 + Silent SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . SEMA3A NM_006080 exon14 c.A1515T p.S505S AGCCGTTGAACCA . 161.0 33.0 135.0 0.0 . 121 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241029 131241029 + Silent SNP G G C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PODXL NM_001018111 exon1 c.C90G p.P30P CTGGGAGGGCGAC . 127.0 10.0 92.0 0.0 . 53 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241055 131241055 + Missense_Mutation SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PODXL NM_001018111 exon1 c.T64C p.S22P GCGACGACGGCAG . 130.0 9.0 101.0 0.0 . 53 . . Atlas-SNP BNIP3L 665 hgsc.bcm.edu hg19 8 26265768 26265768 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . BNIP3L NM_004331 exon5 c.C487T p.R163C CCTAAACGTTCTG . 127.0 38.0 139.0 0.0 . 7 . . Atlas-SNP RIMS2 9699 hgsc.bcm.edu hg19 8 104778484 104778484 + Silent SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . RIMS2 NM_001100117 exon3 c.A417G p.K139K CCGAAAACAACAA . 199.0 30.0 132.0 0.0 . 1357 . . Atlas-SNP HAUS6 54801 hgsc.bcm.edu hg19 9 19102558 19102558 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HAUS6 NM_017645 exon1 c.C92T p.A31V CCGCAGGCAATGG . 218.0 59.0 204.0 0.0 . 66 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21971101 21971101 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 CDKN2A,NS,carcinoma,0,1 CDKN2A NM_058195 exon2 c.C300A p.C100X TCCCGGGCAGCGT . 133.0 43.0 139.0 0.0 . 4810 . . Atlas-SNP FGD3 89846 hgsc.bcm.edu hg19 9 95780428 95780428 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FGD3 NM_001083536 exon11 c.T1286A p.I429N AGGATATCGTCAA . 65.0 19.0 80.0 0.0 . 116 . . Atlas-SNP FKBP15 23307 hgsc.bcm.edu hg19 9 115959216 115959216 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FKBP15 NM_015258 exon9 c.G860T p.R287M ACCCGCCTAACCT . 120.0 19.0 103.0 0.0 . 128 . . Atlas-SNP CCDC7 221016 hgsc.bcm.edu hg19 10 32833205 32833205 + Missense_Mutation SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 CCDC7,parotid,carcinoma,0,1 CCDC7 NM_145023 exon14 c.A1110G p.I370M TAAAATAAAAGAA . 417.0 127.0 396.0 0.0 . 47 . . Atlas-SNP DENND5A 23258 hgsc.bcm.edu hg19 11 9225351 9225351 + Missense_Mutation SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . DENND5A NM_015213 exon4 c.A805G p.I269V AGATTATTGGCCC . 198.0 43.0 163.0 0.0 . 84 . . Atlas-SNP ABCC8 6833 hgsc.bcm.edu hg19 11 17496563 17496563 + Nonsense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ABCC8 NM_000352 exon2 c.C160T p.Q54X AGCTCTGACTTCC . 114.0 22.0 92.0 0.0 . 170 . . Atlas-SNP CHST1 8534 hgsc.bcm.edu hg19 11 45672282 45672282 + Silent SNP G G A rs200379237 TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . CHST1 NM_003654 exon4 c.C192T p.L64L CAGGATGAGGATG . 132.0 6.0 113.0 0.0 . 81 . G|0.999;A|0.001 Atlas-SNP OR5L2 26338 hgsc.bcm.edu hg19 11 55594822 55594822 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . OR5L2 NM_001004739 exon1 c.T128A p.L43Q CCAATCTGGGCAT . 94.0 23.0 102.0 0.0 . 135 . . Atlas-SNP DCUN1D5 84259 hgsc.bcm.edu hg19 11 102935046 102935046 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . DCUN1D5 NM_032299 exon7 c.A616T p.T206S GGACTGTTCTGCT . 74.0 20.0 55.0 0.0 . 11 . . Atlas-SNP OR8D4 338662 hgsc.bcm.edu hg19 11 123777473 123777473 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . OR8D4 NM_001005197 exon1 c.G335A p.C112Y CTGAATGCTACAT . 79.0 19.0 86.0 0.0 . 62 . . Atlas-SNP AMHR2 269 hgsc.bcm.edu hg19 12 53825147 53825147 + Missense_Mutation SNP G G T rs116281343 bycluster;by1000genomes;alternate_allele TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . AMHR2 NM_020547 exon11 c.G1612T p.A538S ATTCCTGCCCCTA . 85.0 22.0 86.0 0.0 . 61 . G|0.999;A|0.001 Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112721009 112721009 + Missense_Mutation SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . . NM_001109662 exon8 c.T1001C p.L334P CTACTTAGAAGCA . 174.0 43.0 154.0 0.0 . . . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 130185090 130185090 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . TMEM132D NM_133448 exon2 c.G233A p.R78Q TCCACCCGGGACT . 144.0 36.0 156.0 0.0 . 299 . . Atlas-SNP OR4N2 390429 hgsc.bcm.edu hg19 14 20296452 20296452 + Missense_Mutation SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . OR4N2 NM_001004723 exon1 c.T845C p.L282S CTTTGTTGAATCC . 152.0 32.0 125.0 0.0 . 125 . . Atlas-SNP ITPK1 3705 hgsc.bcm.edu hg19 14 93408041 93408041 + Silent SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ITPK1 NM_001142593 exon11 c.G1110A p.A370A CCAGGGCGCGTCC . 45.0 10.0 29.0 0.0 . 53 . . Atlas-SNP NEO1 4756 hgsc.bcm.edu hg19 15 73552722 73552722 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . NEO1 NM_001172623 exon15 c.G2314A p.A772T GGTTACGCCATTG . 150.0 12.0 129.0 0.0 . 102 . . Atlas-SNP UNC45A 55898 hgsc.bcm.edu hg19 15 91493443 91493443 + Silent SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . UNC45A NM_018671 exon16 c.C2133T p.A711A CCAGGCCCTTGCC . 134.0 10.0 97.0 0.0 . 57 . . Atlas-SNP ABCC6 368 hgsc.bcm.edu hg19 16 16248587 16248587 + Missense_Mutation SNP T T G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ABCC6 NM_001171 exon29 c.A4106C p.E1369A ATAGCCTCGTCCG . 137.0 47.0 148.0 0.0 . 110 . . Atlas-SNP FAM57B 83723 hgsc.bcm.edu hg19 16 30041827 30041827 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FAM57B NM_031478 exon1 c.G22T p.G8W CCCCCCCGGCCAC . 156.0 41.0 143.0 0.0 . 26 . . Atlas-SNP NFATC3 4775 hgsc.bcm.edu hg19 16 68160388 68160388 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . NFATC3 NM_173163 exon3 c.G1276T p.A426S TTACCAGCTCATT . 143.0 39.0 122.0 0.0 . 190 . . Atlas-SNP PELP1 27043 hgsc.bcm.edu hg19 17 4580066 4580066 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PELP1 NM_014389 exon6 c.G684T p.L228F AGGGCTCAAGGCA . 196.0 28.0 186.0 0.0 . 102 . . Atlas-SNP SLFN12L 100506736 hgsc.bcm.edu hg19 17 33806550 33806550 + Missense_Mutation SNP A A C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . SLFN12L NM_001195790 exon2 c.T679G p.F227V TCGAGAAGTTTTT . 119.0 19.0 93.0 0.0 . 140 . . Atlas-SNP HOXB4 3214 hgsc.bcm.edu hg19 17 46655393 46655393 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HOXB4 NM_024015 exon1 c.C289T p.P97S CGGGTGGCGGCGC . 30.0 7.0 17.0 0.0 . 16 . . Atlas-SNP DCXR 51181 hgsc.bcm.edu hg19 17 79995521 79995521 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . DCXR NM_001195218 exon1 c.C38T p.T13I GCCCCGGTGACCA . 94.0 18.0 78.0 0.0 . 10 . . Atlas-SNP FASN 2194 hgsc.bcm.edu hg19 17 80051184 80051184 + Missense_Mutation SNP T T G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FASN NM_004104 exon5 c.A566C p.N189T AGGACATTGATGC . 191.0 68.0 155.0 0.0 . 154 . . Atlas-SNP CDH7 1005 hgsc.bcm.edu hg19 18 63481780 63481780 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . CDH7 NM_004361 exon4 c.G565A p.A189T AACAGTGCCAGAG . 130.0 39.0 109.0 0.0 . 362 . . Atlas-SNP C19orf21 126353 hgsc.bcm.edu hg19 19 758004 758004 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . C19orf21 NM_173481 exon2 c.G1058A p.R353Q TGCAGCGGGACAT . 37.0 8.0 38.0 0.0 . 56 . . Atlas-SNP NFIC 4782 hgsc.bcm.edu hg19 19 3452573 3452573 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 NFIC,colon,carcinoma,0,1 NFIC NM_001245004 exon8 c.C1178T p.A393V ACACGGCCATCCG . 79.0 9.0 74.0 0.0 . 36 . . Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22941303 22941303 + Missense_Mutation SNP T T C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ZNF99 NM_001080409 exon4 c.A1408G p.K470E CATGTTTTCTAAG . 105.0 29.0 67.0 0.0 . 273 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40434029 40434029 + Silent SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . FCGBP NM_003890 exon2 c.C240A p.V80V CACTGTGACCTTC . 146.0 34.0 131.0 0.0 . 416 . . Atlas-SNP HAS1 3036 hgsc.bcm.edu hg19 19 52220241 52220241 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . HAS1 NM_001523 exon3 c.C908T p.S303F ATGCAGGATACAC . 83.0 19.0 67.0 0.0 . 61 . . Atlas-SNP LILRB5 10990 hgsc.bcm.edu hg19 19 54757883 54757883 + Missense_Mutation SNP C C A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . LILRB5 NM_001081442 exon8 c.G1355T p.S452I TCACCACTCTGGG . 212.0 9.0 210.0 0.0 . 176 . . Atlas-SNP ZNF787 126208 hgsc.bcm.edu hg19 19 56600216 56600216 + Missense_Mutation SNP G G C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ZNF787 NM_001002836 exon3 c.C325G p.L109V GCACCAGGTGCGA . 90.0 20.0 80.0 0.0 . 20 . . Atlas-SNP DDX27 55661 hgsc.bcm.edu hg19 20 47855523 47855523 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 DDX27,NS,carcinoma,0,1 DDX27 NM_017895 exon15 c.G1818T p.M606I GAAAATGGAGAAA . 106.0 5.0 64.0 0.0 . 74 . . Atlas-SNP CTCFL 140690 hgsc.bcm.edu hg19 20 56090848 56090848 + Missense_Mutation SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . CTCFL NM_001269044 exon5 c.C1102A p.R368S AGGGGCGCTCCCC . 61.0 14.0 65.0 0.0 . 97 . . Atlas-SNP KAL1 3730 hgsc.bcm.edu hg19 X 8503661 8503661 + Missense_Mutation SNP T T A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . KAL1 NM_000216 exon12 c.A1813T p.I605F AAATAATGCTGTT . 196.0 106.0 186.0 0.0 . 78 . . Atlas-SNP PHEX 5251 hgsc.bcm.edu hg19 X 22263484 22263484 + Missense_Mutation SNP G G A novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PHEX NM_000444 exon21 c.G2105A p.R702Q CTGCCCGAGAACA . 107.0 11.0 106.0 0.0 . 95 . . Atlas-SNP KCND1 3750 hgsc.bcm.edu hg19 X 48823176 48823176 + Missense_Mutation SNP C C T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . KCND1 NM_004979 exon3 c.G1360A p.G454S CAAGGCCCCCATT . 28.0 10.0 26.0 0.0 . 63 . . Atlas-SNP ATP7A 538 hgsc.bcm.edu hg19 X 77245380 77245380 + Missense_Mutation SNP A A G novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ATP7A NM_000052 exon4 c.A1262G p.Y421C TTGAGTATGATCC . 258.0 138.0 284.0 0.0 . 248 . . Atlas-SNP CXorf57 55086 hgsc.bcm.edu hg19 X 105879772 105879772 + Splice_Site SNP G G T novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . CXorf57 NM_001184782 exon7 c.1304-1G>T . TCTCTAGTGGCAT . 74.0 39.0 64.0 0.0 . 107 . . Atlas-SNP RPP14 11102 hgsc.bcm.edu hg19 3 58303188 58303189 + Frame_Shift_Del DEL TT TT - novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 TT TT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . RPP14 NM_007042 exon6 c.339_340del p.113_114del . . 89.0 20.0 57.0 0.0 . 6 . . Atlas-Indel,Pindel NEFH 4744 hgsc.bcm.edu hg19 22 29885585 29885586 + In_Frame_Ins INS - - AAGTCCCCTGAGAAGGCC novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 .,1 NEFH NM_021076 exon4 c.1956_1957insAAGTCCCCTGAGAAGGCC p.A652delinsAKSPEKA . . 274.0 136.0 247.0 0.0 . 178 . . Atlas-INDEL AFF4 27125 hgsc.bcm.edu hg19 5 132216770 132216771 + Frame_Shift_Ins INS - - C novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . AFF4 NM_014423 exon21 c.3473_3474insG p.D1158fs . . 212.0 47.0 190.0 0.0 . 120 . . Atlas-Indel,Pindel PCDHB14 56122 hgsc.bcm.edu hg19 5 140603901 140603910 + Frame_Shift_Del DEL GAAAAATATC GAAAAATATC - novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 GAAAAATATC GAAAAATATC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . PCDHB14 NM_018934 exon1 c.823_832del p.275_278del . . 87.0 17.0 102.0 0.0 . 132 . . Atlas-Indel,Pindel USH2A 7399 hgsc.bcm.edu hg19 1 216595468 216595469 + In_Frame_Ins INS - - AGA novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . USH2A NM_206933 exon2 c.211_212insTCT p.A71delinsSA . . 244.0 109.0 142.0 0.0 . 1168 . . Atlas-Indel,Pindel ZNF626 199777 hgsc.bcm.edu hg19 19 20807134 20807300 + Frame_Shift_Del DEL GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA - novel TCGA-DD-AAC9-01A-11D-A40R-10 TCGA-DD-AAC9-10A-01D-A40U-10 GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA GCTTTGCCACATTCTTCACATTTGTAGAATTTCTCTCCAGTATGATTCTCTCATGTGTAGTAAGGATTGAGGACTGGTTGAAGGCTTTGCCACATTCTTCACATTTGTAGGGTCTCTCTCCAGTATGAATTTTCTTATGTGTAGTAAGGTTAGAGGAGCACTTAAAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4211b22d-de83-4dba-b4f6-846ab2aeba13 c2e6366d-0283-4200-b9eb-0f2a11942592 . ZNF626 NM_001076675 exon4 c.1384_1550del p.462_517del . . 23.0 10.0 29.0 0.0 . 121 . . Pindel