Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm COL16A1 1307 hgsc.bcm.edu hg19 1 32131184 32131184 + Silent SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . COL16A1 NM_001856 exon55 c.G3492A p.P1164P ACTCACCGGTGGG . 65.0 21.0 66.0 0.0 . 137 . . Atlas-SNP ERMAP 114625 hgsc.bcm.edu hg19 1 43296622 43296622 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ERMAP NM_001017922 exon4 c.T269A p.L90Q AAGATCTGATGCC . 137.0 74.0 166.0 0.0 . 30 . . Atlas-SNP NRAS 4893 hgsc.bcm.edu hg19 1 115256600 115256600 + Splice_Site SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . NRAS NM_002524 exon4 c.112-1G>A . AGAATCCTGGGGG . 60.0 38.0 63.0 0.0 . 3766 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145367777 145367777 + Missense_Mutation SNP G G T rs200743139 bycluster TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 NBPF10,NS,carcinoma,0,1 NBPF10 NM_001039703 exon83 c.G10373T p.R3458M GAAGAAGGGGAAG . 7.0 5.0 3.0 0.0 . 221 . . Atlas-SNP TCHHL1 126637 hgsc.bcm.edu hg19 1 152057498 152057498 + Missense_Mutation SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TCHHL1 NM_001008536 exon3 c.A2660G p.H887R TGAGGGTGACCTT . 209.0 71.0 104.0 0.0 . 132 . . Atlas-SNP INTS3 65123 hgsc.bcm.edu hg19 1 153745721 153745721 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . INTS3 NM_023015 exon30 c.C3104T p.S1035F GGTCCTCTGCAGT . 189.0 146.0 93.0 0.0 . 83 . . Atlas-SNP F5 2153 hgsc.bcm.edu hg19 1 169555596 169555596 + Missense_Mutation SNP A A C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . F5 NM_000130 exon1 c.T29G p.V10G ACCAGGACCCAGA . 86.0 57.0 50.0 0.0 . 301 . . Atlas-SNP SMG7 9887 hgsc.bcm.edu hg19 1 183510238 183510238 + Missense_Mutation SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . SMG7 NM_201569 exon13 c.G1415A p.R472K AGCCAAGGTAAGT . 518.0 75.0 343.0 0.0 . 165 . . Atlas-SNP INTS7 25896 hgsc.bcm.edu hg19 1 212118308 212118308 + Missense_Mutation SNP C C G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . INTS7 NM_015434 exon19 c.G2419C p.A807P ACAGAGCAAGCTG . 123.0 5.0 69.0 0.0 . 68 . . Atlas-SNP AGT 183 hgsc.bcm.edu hg19 1 230838957 230838957 + Missense_Mutation SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . AGT NM_000029 exon5 c.C1388T p.A463V TACACAGCAAACA . 264.0 105.0 153.0 0.0 . 62 . . Atlas-SNP EDARADD 128178 hgsc.bcm.edu hg19 1 236590697 236590697 + Missense_Mutation SNP G G C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . EDARADD NM_145861 exon4 c.G166C p.E56Q GCTGAAGAATGTG . 417.0 65.0 263.0 0.0 . 31 . . Atlas-SNP ODC1 4953 hgsc.bcm.edu hg19 2 10580969 10580969 + Missense_Mutation SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ODC1 NM_002539 exon12 c.C1267T p.P423S AGTCGGGGTTCTG . 82.0 39.0 129.0 0.0 . 40 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32774378 32774378 + Splice_Site SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . BIRC6 NM_016252 exon65 c.12976-2A>G . ATTTTTAGGTTCT . 269.0 105.0 413.0 0.0 . 838 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613065 73613065 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ALMS1 NM_015120 exon1 c.G69A p.E23E GGAGGAGGAGGAA . 444.0 30.0 551.0 0.0 . 384 . . Atlas-SNP HK2 3099 hgsc.bcm.edu hg19 2 75113492 75113492 + Silent SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . HK2 NM_000189 exon14 c.C2007T p.D669D TGAAGACCCTCAC . 71.0 25.0 102.0 0.0 . 85 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149803415 149803415 + Missense_Mutation SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . KIF5C NM_004522 exon8 c.A592G p.M198V TCAGACATGAATG . 152.0 64.0 202.0 0.0 . 166 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179500897 179500897 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TTN NM_001267550 exon226 c.A41401T p.S13801C CGCAGCTCAAGTA . 73.0 29.0 108.0 0.0 . 18412 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207174808 207174808 + Silent SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ZDBF2 NM_020923 exon5 c.A5556G p.E1852E TAGGGAAGGTCGT . 107.0 43.0 164.0 0.0 . 531 . . Atlas-SNP COL4A3 1285 hgsc.bcm.edu hg19 2 228141109 228141109 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . COL4A3 NM_000091 exon27 c.G1936T p.G646X CCTAGGGGAGAGC . 81.0 28.0 105.0 0.0 . 293 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48698559 48698559 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CELSR3 NM_001407 exon1 c.C1509T p.R503R GTGCTCGCGGTCC . 131.0 33.0 129.0 0.0 . 237 . . Atlas-SNP ITIH3 3699 hgsc.bcm.edu hg19 3 52834993 52834993 + Missense_Mutation SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ITIH3 NM_002217 exon11 c.C1214A p.P405H GCAGACCCGAAAA . 162.0 30.0 158.0 0.0 . 132 . . Atlas-SNP CNTN3 5067 hgsc.bcm.edu hg19 3 74334612 74334612 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CNTN3 NM_020872 exon19 c.G2548A p.E850K ATGATTCCTCCTT . 130.0 72.0 149.0 0.0 . 174 . . Atlas-SNP OR5H14 403273 hgsc.bcm.edu hg19 3 97868504 97868504 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . OR5H14 NM_001005514 exon1 c.T275A p.I92K AGATGATATCTCT . 199.0 53.0 188.0 0.0 . 56 . . Atlas-SNP A4GNT 51146 hgsc.bcm.edu hg19 3 137849889 137849889 + Silent SNP G G A rs374392631 alternate_allele TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . A4GNT NM_016161 exon2 c.C210T p.S70S CTCTACGGAACAG . 227.0 112.0 247.0 0.0 . 42 . . Atlas-SNP FAM53A 152877 hgsc.bcm.edu hg19 4 1657010 1657010 + Missense_Mutation SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . FAM53A NM_001013622 exon4 c.G577T p.G193C CGAAGCCGCCGCT . 41.0 15.0 73.0 0.0 . 25 . . Atlas-SNP CLNK 116449 hgsc.bcm.edu hg19 4 10567642 10567642 + Missense_Mutation SNP C C G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CLNK NM_052964 exon6 c.G283C p.E95Q CATATTCAGATTC . 51.0 22.0 78.0 0.0 . 85 . . Atlas-SNP LPHN3 23284 hgsc.bcm.edu hg19 4 62897286 62897286 + Missense_Mutation SNP G G T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . LPHN3 NM_015236 exon20 c.G3345T p.Q1115H TCTACAGGGAATG . 83.0 28.0 128.0 0.0 . 800 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79360143 79360143 + Silent SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . FRAS1 NM_001166133 exon40 c.T5454C p.D1818D TCTGGATAATCAG . 52.0 24.0 72.0 0.0 . 779 . . Atlas-SNP LRIT3 345193 hgsc.bcm.edu hg19 4 110772751 110772751 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . LRIT3 NM_198506 exon2 c.C208T p.R70C GTCATCCGCAGAA . 89.0 36.0 104.0 0.0 . 107 . . Atlas-SNP LARP1B 55132 hgsc.bcm.edu hg19 4 129028555 129028555 + Missense_Mutation SNP T T G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . LARP1B NM_032239 exon9 c.T1075G p.X359E TTTATTTAGATTT . 67.0 25.0 107.0 0.0 . 120 . . Atlas-SNP TMEM144 55314 hgsc.bcm.edu hg19 4 159162713 159162713 + Silent SNP A A C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TMEM144 NM_018342 exon11 c.A855C p.A285A CATAGCAAATCAC . 43.0 10.0 57.0 0.0 . 34 . . Atlas-SNP HCN1 348980 hgsc.bcm.edu hg19 5 45267245 45267245 + Missense_Mutation SNP G G T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . HCN1 NM_021072 exon7 c.C1729A p.P577T TCATTGGATATTC . 149.0 44.0 127.0 0.0 . 298 . . Atlas-SNP HCN1 348980 hgsc.bcm.edu hg19 5 45645564 45645564 + Missense_Mutation SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . HCN1 NM_021072 exon2 c.T572C p.I191T TTCATGATCAGGT . 110.0 34.0 98.0 0.0 . 298 . . Atlas-SNP PIK3R1 5295 hgsc.bcm.edu hg19 5 67576424 67576424 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PIK3R1 NM_181523 exon6 c.C703T p.Q235X CCTCATCAGTATT . 162.0 90.0 175.0 0.0 . 869 . . Atlas-SNP PCDHGC3 5098 hgsc.bcm.edu hg19 5 140857013 140857013 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 PCDHGC3_ENST00000308177,colon,NS,0,2 PCDHGC3 NM_032402 exon1 c.C1330T p.R444C ATAGTGCGTGTTC . 128.0 77.0 150.0 0.0 . 173 . . Atlas-SNP TCOF1 6949 hgsc.bcm.edu hg19 5 149758589 149758589 + Missense_Mutation SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TCOF1 NM_001135243 exon15 c.A2462G p.Q821R CCAAGCAGAGGTC . 147.0 84.0 197.0 0.0 . 154 . . Atlas-SNP FOXC1 2296 hgsc.bcm.edu hg19 6 1612042 1612042 + Silent SNP G G C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . FOXC1 NM_001453 exon1 c.G1362C p.G454G CGGCGGGGGAGGC . 483.0 31.0 269.0 0.0 . 19 . . Atlas-SNP TREM1 54210 hgsc.bcm.edu hg19 6 41250225 41250225 + Missense_Mutation SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TREM1 NM_001242590 exon2 c.T314C p.V105A TCTTCCACTTGAA . 171.0 17.0 82.0 0.0 . 38 . . Atlas-SNP TOMM6 100188893 hgsc.bcm.edu hg19 6 41757064 41757064 + Missense_Mutation SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TOMM6 NM_001134493 exon2 c.T223C p.X75Q GGGGTGTAGCCAA . 133.0 19.0 72.0 0.0 . 12 . . Atlas-SNP RUNX2 860 hgsc.bcm.edu hg19 6 45390469 45390469 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . RUNX2 NM_001024630 exon3 c.G198A p.Q66Q GCAACAGCAGCAG . 149.0 7.0 66.0 0.0 . 128 . . Atlas-SNP SLC22A2 6582 hgsc.bcm.edu hg19 6 160677694 160677694 + Missense_Mutation SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . SLC22A2 NM_003058 exon2 c.A470G p.N157S CCTACATTCACTG . 129.0 38.0 134.0 0.0 . 78 . . Atlas-SNP MYO1G 64005 hgsc.bcm.edu hg19 7 45005789 45005789 + Silent SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . MYO1G NM_033054 exon16 c.G2040T p.L680L CCCCTGCAGCCCG . 56.0 19.0 31.0 0.0 . 86 . . Atlas-SNP PON3 5446 hgsc.bcm.edu hg19 7 94996796 94996796 + Missense_Mutation SNP A A T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PON3 NM_000940 exon5 c.T372A p.N124K CACAGTATTGTCT . 140.0 55.0 82.0 0.0 . 59 . . Atlas-SNP FBXO24 26261 hgsc.bcm.edu hg19 7 100187289 100187289 + Missense_Mutation SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 FBXO24_ENST00000427939,NS,carcinoma,0,3 FBXO24 NM_012172 exon1 c.G26A p.R9Q AGGAACGGGGGGG . 217.0 20.0 199.0 0.0 . 125 . . Atlas-SNP EPHB4 2050 hgsc.bcm.edu hg19 7 100420008 100420008 + Silent SNP A A T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . EPHB4 NM_004444 exon4 c.T693A p.P231P GGGGCCAGGGGCG . 149.0 61.0 108.0 0.0 . 106 . . Atlas-SNP LHFPL3 375612 hgsc.bcm.edu hg19 7 103969251 103969251 + Silent SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 LHFPL3,NS,carcinoma,0,1 LHFPL3 NM_199000 exon1 c.C24T p.A8A CGCTGCCGCCGCC . 50.0 2.0 38.0 0.0 . 24 . . Atlas-SNP GCC1 79571 hgsc.bcm.edu hg19 7 127225186 127225186 + Silent SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . GCC1 NM_024523 exon1 c.G51A p.L17L CTCCAGCAAGTCC . 101.0 50.0 64.0 0.0 . 83 . . Atlas-SNP ZNF282 8427 hgsc.bcm.edu hg19 7 148895528 148895528 + Missense_Mutation SNP A A T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ZNF282 NM_003575 exon2 c.A269T p.Q90L AGCCCCAGTTGCC . 134.0 69.0 91.0 0.0 . 42 . . Atlas-SNP EXTL3 2137 hgsc.bcm.edu hg19 8 28573960 28573960 + Silent SNP G G T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . EXTL3 NM_001440 exon3 c.G384T p.L128L GGACCTGCTCCAG . 60.0 15.0 66.0 0.0 . 83 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69046429 69046429 + Missense_Mutation SNP G G C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PREX2 NM_024870 exon32 c.G3902C p.W1301S AAACTTGGGAAGC . 108.0 38.0 108.0 0.0 . 614 . . Atlas-SNP ZNF696 79943 hgsc.bcm.edu hg19 8 144375190 144375190 + Missense_Mutation SNP C C G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ZNF696 NM_030895 exon2 c.C19G p.P7A GGAGAGCCCACAG . 127.0 46.0 118.0 0.0 . 18 . . Atlas-SNP MAMDC2 256691 hgsc.bcm.edu hg19 9 72723289 72723289 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . MAMDC2 NM_153267 exon3 c.T311A p.M104K TCTACATGAGATT . 89.0 34.0 113.0 0.0 . 55 . . Atlas-SNP PROSER2 254427 hgsc.bcm.edu hg19 10 11912120 11912120 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . . NM_153256 exon4 c.G1023A p.L341L GGCGCTGGCCAAC . 26.0 7.0 10.0 0.0 . . . . Atlas-SNP CUBN 8029 hgsc.bcm.edu hg19 10 17169878 17169878 + Missense_Mutation SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CUBN NM_001081 exon3 c.A298G p.I100V GACCAATTGCACT . 82.0 47.0 83.0 0.0 . 515 . . Atlas-SNP HK1 3098 hgsc.bcm.edu hg19 10 71158366 71158366 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . HK1 NM_033498 exon20 c.G2403A p.L801L AGCACTGCTCCAG . 54.0 16.0 48.0 0.0 . 170 . . Atlas-SNP ECHS1 1892 hgsc.bcm.edu hg19 10 135180466 135180466 + Silent SNP A A T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ECHS1 NM_004092 exon5 c.T546A p.A182A CCCAACAGCACGG . 44.0 15.0 58.0 0.0 . 31 . . Atlas-SNP DRD2 1813 hgsc.bcm.edu hg19 11 113281524 113281524 + Missense_Mutation SNP G G T rs79932566 bycluster;alternate_allele TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . DRD2 NM_000795 exon8 c.C1257A p.S419R CACGGCGCTGTTG . 129.0 47.0 104.0 0.0 . 98 . G|1.000;A|0.000 Atlas-SNP SLC4A8 9498 hgsc.bcm.edu hg19 12 51857460 51857460 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . SLC4A8 NM_001039960 exon11 c.T1311A p.H437Q ACCACATGGGGGT . 85.0 37.0 148.0 0.0 . 292 . . Atlas-SNP SLC26A10 65012 hgsc.bcm.edu hg19 12 58019464 58019464 + Missense_Mutation SNP G G T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . SLC26A10 NM_133489 exon14 c.G1628T p.G543V CCCTGGGGAGCCT . 40.0 16.0 37.0 0.0 . 89 . . Atlas-SNP PITPNM2 57605 hgsc.bcm.edu hg19 12 123475098 123475098 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PITPNM2 NM_020845 exon16 c.G2563A p.A855T TCTGGGCGATGCT . 25.0 9.0 42.0 0.0 . 105 . . Atlas-SNP COL4A1 1282 hgsc.bcm.edu hg19 13 110822980 110822980 + Missense_Mutation SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . COL4A1 NM_001845 exon42 c.G3656T p.G1219V GGCTGTCCCTGGG . 187.0 47.0 85.0 0.0 . 372 . . Atlas-SNP FOXG1 2290 hgsc.bcm.edu hg19 14 29237416 29237416 + Missense_Mutation SNP T T A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . FOXG1 NM_005249 exon1 c.T931A p.S311T CCCATGTCGCCCT . 50.0 10.0 89.0 0.0 . 92 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52520493 52520493 + Silent SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . NID2 NM_007361 exon5 c.A1233G p.P411P CGGTGGTGGGGTT . 104.0 35.0 152.0 0.0 . 201 . . Atlas-SNP UNC79 57578 hgsc.bcm.edu hg19 14 94173074 94173074 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . UNC79 NM_020818 exon50 c.C7201T p.R2401C CAGCTTCGCCTCC . 93.0 35.0 124.0 0.0 . 366 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105415678 105415678 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . AHNAK2 NM_138420 exon7 c.G6110A p.S2037N TGAATGCTGAGGT . 128.0 37.0 135.0 0.0 . 719 . . Atlas-SNP CHRNA7 1139 hgsc.bcm.edu hg19 15 32323130 32323130 + Missense_Mutation SNP C C A rs199819119 alternate_allele TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CHRNA7 NM_001190455 exon2 c.C172A p.L58I AGGAAGCTTTACA . 83.0 53.0 76.0 0.0 . 57 . . Atlas-SNP TICRR 90381 hgsc.bcm.edu hg19 15 90145127 90145127 + Silent SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . . NM_152259 exon12 c.A2487G p.S829S TTTGTCAAGTGCT . 100.0 32.0 102.0 0.0 . . . . Atlas-SNP ABCC12 94160 hgsc.bcm.edu hg19 16 48173219 48173219 + Missense_Mutation SNP T T C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ABCC12 NM_033226 exon5 c.A686G p.Y229C AAAGAATAGCTAT . 172.0 46.0 165.0 0.0 . 190 . . Atlas-SNP PHF23 79142 hgsc.bcm.edu hg19 17 7139048 7139048 + Missense_Mutation SNP A A C novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PHF23 NM_024297 exon5 c.T1109G p.I370S TTCTTAATCTTAG . 30.0 17.0 57.0 0.0 . 38 . . Atlas-SNP KLHL10 317719 hgsc.bcm.edu hg19 17 39998197 39998197 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . KLHL10 NM_152467 exon2 c.C317T p.P106L TCACACCGGACAA . 235.0 52.0 187.0 0.0 . 67 . . Atlas-SNP DHX8 1659 hgsc.bcm.edu hg19 17 41585264 41585264 + Missense_Mutation SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . DHX8 NM_004941 exon15 c.C2197A p.P733T GAAGCTCCCATTT . 171.0 107.0 108.0 0.0 . 98 . . Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42956967 42956967 + Missense_Mutation SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . EFTUD2 NM_004247 exon9 c.G659A p.R220H GAGATGCGCAAGC . 110.0 70.0 116.0 0.0 . 85 . . Atlas-SNP OSBPL7 114881 hgsc.bcm.edu hg19 17 45886525 45886525 + Missense_Mutation SNP C C A rs376859496 alternate_allele TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 OSBPL7,NS,carcinoma,0,1 OSBPL7 NM_145798 exon20 c.G2087T p.R696L AGGACACGGCCAC . 88.0 54.0 74.0 0.0 . 65 . . Atlas-SNP RSAD1 55316 hgsc.bcm.edu hg19 17 48559662 48559662 + Missense_Mutation SNP T T G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . RSAD1 NM_018346 exon4 c.T685G p.S229A CAGCTGTCCCTGG . 140.0 81.0 119.0 0.0 . 36 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 66978770 66978770 + Silent SNP C C T novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ABCA9 NM_080283 exon37 c.G4653A p.L1551L GACCATCAGGGAG . 119.0 30.0 109.0 0.0 . 192 . . Atlas-SNP EVPL 2125 hgsc.bcm.edu hg19 17 74015086 74015086 + Missense_Mutation SNP C C T rs201678162 bycluster TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . EVPL NM_001988 exon11 c.G1193A p.R398Q CGGCTTCGCCGCT . 121.0 45.0 108.0 0.0 . 155 . . Atlas-SNP FZR1 51343 hgsc.bcm.edu hg19 19 3531769 3531769 + Missense_Mutation SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . FZR1 NM_001136198 exon8 c.G778A p.A260T GCAGCCGCAGGGA . 126.0 8.0 152.0 0.0 . 42 . . Atlas-SNP CHAF1A 10036 hgsc.bcm.edu hg19 19 4422571 4422571 + Silent SNP G G A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . CHAF1A NM_005483 exon5 c.G1026A p.E342E TCAGGAGCGTCTG . 79.0 23.0 137.0 0.0 . 69 . . Atlas-SNP ZNF627 199692 hgsc.bcm.edu hg19 19 11727702 11727702 + Silent SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . ZNF627 NM_145295 exon4 c.A384G p.P128P TGAACCAAATGAA . 173.0 70.0 167.0 0.0 . 43 . . Atlas-SNP PGLS 25796 hgsc.bcm.edu hg19 19 17626986 17626986 + Missense_Mutation SNP A A G novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . PGLS NM_012088 exon2 c.A293G p.H98R AGACGCATCTTCT . 81.0 26.0 115.0 0.0 . 12 . . Atlas-SNP SIGLEC1 6614 hgsc.bcm.edu hg19 20 3679945 3679945 + Missense_Mutation SNP C C A novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . SIGLEC1 NM_023068 exon7 c.G1690T p.A564S AGGCCGCGGGGAG . 157.0 86.0 155.0 0.0 . 210 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7576863 7576863 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 TP53,sinonasal_and_nasal_cavity,lymphoid_neoplasm,0,3 TP53 NM_001126112 exon9 c.984delC p.F328fs . . 68.0 41.0 186.0 0.0 . 33396 . . Atlas-INDEL WNK3 65267 hgsc.bcm.edu hg19 X 54264775 54264776 + Frame_Shift_Del DEL CT CT - novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 CT CT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . WNK3 NM_020922 exon19 c.4014_4014del p.1338_1338del . . 65.0 49.0 67.0 0.0 . 218 . . Atlas-INDEL TMEM165 55858 hgsc.bcm.edu hg19 4 56284075 56284077 + In_Frame_Del DEL CAA CAA - novel TCGA-DD-AACE-01A-11D-A40R-10 TCGA-DD-AACE-10A-01D-A40U-10 CAA CAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 4b4d8378-ded6-4a8c-9839-6e437ce1d88a ba4f8145-e3ba-4242-a382-1c87a35ed636 . TMEM165 NM_018475 exon4 c.714_716del p.238_239del . . 159.0 60.0 255.0 0.0 . 12 . . Atlas-INDEL