Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm RPL11 6135 hgsc.bcm.edu hg19 1 24020395 24020395 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . RPL11 NM_000975 exon3 c.G256T p.G86C GAGAAGGGTCTAA . 96.0 43.0 68.0 0.0 . 21 . . Atlas-SNP IL22RA1 58985 hgsc.bcm.edu hg19 1 24448089 24448089 + Missense_Mutation SNP C C G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . IL22RA1 NM_021258 exon7 c.G931C p.E311Q CGGGCTCCCTGGG . 82.0 24.0 77.0 0.0 . 62 . . Atlas-SNP EPHA10 284656 hgsc.bcm.edu hg19 1 38187384 38187384 + Silent SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . EPHA10 NM_001099439 exon11 c.G2094A p.L698L CTGGCCCAGCGTG . 214.0 85.0 190.0 0.0 . 120 . . Atlas-SNP FOXE3 2301 hgsc.bcm.edu hg19 1 47881990 47881990 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FOXE3 NM_012186 exon1 c.G3A p.M1I GCCGATGGCGGGG . 36.0 13.0 23.0 0.0 . 8 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79392770 79392770 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ELTD1 NM_022159 exon8 c.T884C p.V295A ACTGCAACATTGC . 128.0 49.0 122.0 0.0 . 143 . . Atlas-SNP FLG 2312 hgsc.bcm.edu hg19 1 152277071 152277071 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FLG NM_002016 exon3 c.C10291A p.Q3431K TGTCCTGACCCTC . 171.0 14.0 65.0 0.0 . 900 . . Atlas-SNP ARHGEF11 9826 hgsc.bcm.edu hg19 1 156908219 156908219 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ARHGEF11 NM_198236 exon38 c.A4183T p.K1395X TAGCCTTTGTTCC . 133.0 98.0 40.0 0.0 . 168 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167097070 167097070 + Missense_Mutation SNP G G T rs61748781 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DUSP27 NM_001080426 exon5 c.G2702T p.R901L CTTCCCGCAGTAA . 111.0 78.0 42.0 0.0 . 235 . G|0.987;A|0.013 Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182856333 182856333 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DHX9 NM_001357 exon28 c.G3577T p.G1193C AGTGGAGGCTATG . 109.0 5.0 126.0 0.0 . 114 . . Atlas-SNP KIF14 9928 hgsc.bcm.edu hg19 1 200522691 200522691 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KIF14 NM_014875 exon30 c.T4772C p.L1591S GGTTTCAACAAAT . 428.0 291.0 173.0 0.0 . 156 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237961396 237961396 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . RYR2 NM_001035 exon97 c.G14016A p.M4672I TGGCATGGACAAG . 246.0 189.0 117.0 0.0 . 1273 . . Atlas-SNP CENPA 1058 hgsc.bcm.edu hg19 2 27015082 27015082 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CENPA NM_001042426 exon2 c.A184G p.I62V CTCTTGATAAGGA . 90.0 32.0 89.0 0.0 . 13 . . Atlas-SNP R3HDM1 23518 hgsc.bcm.edu hg19 2 136437817 136437817 + Silent SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . R3HDM1 NM_015361 exon20 c.T2277A p.S759S TCAGTCTAATCAA . 133.0 56.0 114.0 0.0 . 84 . . Atlas-SNP ITGB6 3694 hgsc.bcm.edu hg19 2 161052096 161052096 + Missense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ITGB6 NM_000888 exon4 c.G377A p.R126H GTCTGGCGGACAT . 58.0 16.0 58.0 0.0 . 68 . . Atlas-SNP STK39 27347 hgsc.bcm.edu hg19 2 168986092 168986092 + Silent SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . STK39 NM_013233 exon10 c.C1048T p.L350L TAAGCAGCTTCTC . 169.0 59.0 128.0 0.0 . 95 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179455790 179455790 + Missense_Mutation SNP A A C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TTN NM_001267550 exon304 c.T60662G p.V20221G GAGACAACACCCC . 150.0 28.0 109.0 0.0 . 18412 . . Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187559065 187559065 + Silent SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FAM171B NM_177454 exon1 c.G165A p.Q55Q ACAACAGCAAAAG . 116.0 8.0 109.0 0.0 . 146 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189873710 189873710 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . COL3A1 NM_000090 exon48 c.T3586C p.C1196R GGTCCTTGCTGTG . 173.0 70.0 128.0 0.0 . 292 . . Atlas-SNP PIKFYVE 200576 hgsc.bcm.edu hg19 2 209195391 209195391 + Silent SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PIKFYVE NM_015040 exon23 c.A3936G p.T1312T TCTTACATATTCC . 75.0 34.0 88.0 0.0 . 223 . . Atlas-SNP PRICKLE2 166336 hgsc.bcm.edu hg19 3 64132537 64132537 + Silent SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PRICKLE2 NM_198859 exon7 c.C1629A p.S543S TTCCATGGAGCCC . 63.0 25.0 60.0 0.0 . 88 . . Atlas-SNP KIAA2018 205717 hgsc.bcm.edu hg19 3 113376412 113376412 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KIAA2018 NM_001009899 exon7 c.A4117G p.M1373V CCATCATTTGAGT . 82.0 37.0 76.0 0.0 . 180 . . Atlas-SNP GFM1 85476 hgsc.bcm.edu hg19 3 158363556 158363556 + Missense_Mutation SNP G G C rs140377587 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . GFM1 NM_024996 exon2 c.G220C p.A74P AGAATTGCAAAGA . 108.0 43.0 115.0 0.0 . 83 . G|0.998;T|0.002 Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57173769 57173769 + Silent SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KIAA1211 NM_020722 exon5 c.C189T p.N63N GGCAAACAGTGGA . 107.0 35.0 86.0 0.0 . 178 . . Atlas-SNP TMPRSS11D 9407 hgsc.bcm.edu hg19 4 68703989 68703989 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TMPRSS11D NM_004262 exon5 c.A376G p.N126D CATTGTTATTTCT . 114.0 43.0 91.0 0.0 . 68 . . Atlas-SNP ADH4 127 hgsc.bcm.edu hg19 4 100057655 100057655 + Missense_Mutation SNP A A C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ADH4 NM_000670 exon5 c.T544G p.F182V TTGAAAACCCACA . 80.0 31.0 70.0 0.0 . 35 . . Atlas-SNP NUDT6 11162 hgsc.bcm.edu hg19 4 123814266 123814266 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . NUDT6 NM_007083 exon5 c.T668C p.M223T ATATACATATCTG . 63.0 26.0 52.0 0.0 . 50 . . Atlas-SNP FGA 2243 hgsc.bcm.edu hg19 4 155507834 155507834 + Missense_Mutation SNP C C G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FGA NM_000508 exon5 c.G747C p.K249N TAATGCCTTCCAC . 104.0 37.0 101.0 0.0 . 179 . . Atlas-SNP DNAH5 1767 hgsc.bcm.edu hg19 5 13876819 13876819 + Missense_Mutation SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DNAH5 NM_001369 exon22 c.A3370T p.S1124C TTGTGCTAAGCAC . 145.0 69.0 163.0 0.0 . 868 . . Atlas-SNP C5orf42 65250 hgsc.bcm.edu hg19 5 37213755 37213755 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . C5orf42 NM_023073 exon16 c.G2826T p.M942I ACGAGCCATGGAC . 417.0 164.0 390.0 1.0 . 422 . . Atlas-SNP MAST4 375449 hgsc.bcm.edu hg19 5 66430370 66430370 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MAST4 NM_001164664 exon18 c.A2246G p.Y749C CTGAATACATTGC . 100.0 38.0 103.0 0.0 . 218 . . Atlas-SNP CRHBP 1393 hgsc.bcm.edu hg19 5 76254694 76254694 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CRHBP NM_001882 exon5 c.G673A p.V225I GGACACGTAAATG . 103.0 9.0 51.0 0.0 . 46 . . Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138269736 138269736 + Silent SNP G G A rs1059181 bycluster TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CTNNA1 NM_001903 exon18 c.G2679A p.P893P GAACCCGGTGCAG . 74.0 46.0 33.0 0.0 . 114 . . Atlas-SNP PCDHA13 56136 hgsc.bcm.edu hg19 5 140262783 140262783 + Silent SNP C C T rs145698462 alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PCDHA13 NM_031865 exon1 c.C930T p.F310F AGATTTCGAAGAA . 180.0 110.0 137.0 0.0 . 213 . C|1.000;A|0.000 Atlas-SNP PCDHGB5 56101 hgsc.bcm.edu hg19 5 140779699 140779699 + Missense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . . NM_018925 exon1 c.C2005T p.P669S GTGCTGCCGGATA . 91.0 61.0 55.0 0.0 . . . . Atlas-SNP NMUR2 56923 hgsc.bcm.edu hg19 5 151784456 151784456 + Silent SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . NMUR2 NM_020167 exon1 c.C219T p.H73H AGCCTGGTGCTGC . 185.0 60.0 118.0 0.0 . 111 . . Atlas-SNP POM121L2 94026 hgsc.bcm.edu hg19 6 27277615 27277615 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . POM121L2 NM_033482 exon1 c.A2335G p.T779A CATTTGTGGCACC . 107.0 48.0 127.0 0.0 . 61 . . Atlas-SNP HLA-DPB1 3115 hgsc.bcm.edu hg19 6 33053995 33053995 + Splice_Site SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . HLA-DPB1 NM_002121 exon5 c.758-1G>T . ATTTCAGTTCAAC . 79.0 18.0 93.0 0.0 . 28 . . Atlas-SNP PPP1R17 10842 hgsc.bcm.edu hg19 7 31735231 31735231 + Silent SNP A A T rs367575540 alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . . NM_006658 exon3 c.A231T p.I77I TTTCATACCAGGT . 228.0 130.0 106.0 0.0 . . . . Atlas-SNP TBX20 57057 hgsc.bcm.edu hg19 7 35288373 35288373 + Missense_Mutation SNP G G A rs112862467 alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TBX20 NM_001077653 exon3 c.C461T p.P154L TCCACAGGGACGA . 187.0 102.0 111.0 0.0 . 96 . G|0.998;C|0.002 Atlas-SNP ZNF713 349075 hgsc.bcm.edu hg19 7 55990926 55990926 + Missense_Mutation SNP A A T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ZNF713 NM_182633 exon2 c.A120T p.Q40H TGCCCAAAAGAAC . 98.0 16.0 79.0 0.0 . 47 . . Atlas-SNP SLC25A13 10165 hgsc.bcm.edu hg19 7 95820436 95820436 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SLC25A13 NM_001160210 exon7 c.G739T p.V247F CTTCAACATCTTT . 48.0 42.0 47.0 0.0 . 131 . . Atlas-SNP LMBR1 64327 hgsc.bcm.edu hg19 7 156555801 156555801 + Splice_Site SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . LMBR1 NM_022458 exon8 c.619+1G>T . TACTTACAGAGAA . 445.0 225.0 278.0 1.0 . 35 . . Atlas-SNP SMIM19 0 hgsc.bcm.edu hg19 8 42401693 42401693 + Silent SNP C C G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . . NM_001135675 exon2 c.C78G p.T26T AGCCACCAATGTT . 107.0 36.0 121.0 0.0 . . . . Atlas-SNP SLCO5A1 81796 hgsc.bcm.edu hg19 8 70591797 70591797 + Missense_Mutation SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SLCO5A1 NM_030958 exon8 c.A1840T p.T614S CCACGGTGGGTGG . 152.0 36.0 86.0 0.0 . 142 . . Atlas-SNP CRISPLD1 83690 hgsc.bcm.edu hg19 8 75932274 75932274 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CRISPLD1 NM_031461 exon12 c.C1204T p.Q402X GTGGAACAGCTCT . 155.0 47.0 120.0 0.0 . 94 . . Atlas-SNP SLC25A32 81034 hgsc.bcm.edu hg19 8 104415462 104415462 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SLC25A32 NM_030780 exon4 c.G482T p.R161L TATTGTCGGTGTG . 138.0 32.0 106.0 0.0 . 36 . . Atlas-SNP DDX58 23586 hgsc.bcm.edu hg19 9 32457126 32457126 + Silent SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DDX58 NM_014314 exon18 c.C2772A p.S924S TCATTTGGACATT . 83.0 18.0 69.0 0.0 . 82 . . Atlas-SNP SLC2A6 11182 hgsc.bcm.edu hg19 9 136338644 136338644 + Missense_Mutation SNP G G C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SLC2A6 NM_017585 exon8 c.C1115G p.T372S CCCGCAGTGCTGT . 107.0 22.0 129.0 0.0 . 31 . . Atlas-SNP DDX50 79009 hgsc.bcm.edu hg19 10 70673827 70673827 + Missense_Mutation SNP A A G rs202146235 TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DDX50 NM_024045 exon7 c.A956G p.N319S AAGACAATCCTCA . 97.0 68.0 150.0 0.0 . 65 . A|0.999;G|0.001 Atlas-SNP TLX1 3195 hgsc.bcm.edu hg19 10 102891823 102891823 + Silent SNP C C G rs2742016 alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TLX1 NM_005521 exon1 c.C525G p.P175P CTTCCCCTGGATG . 7.0 7.0 3.0 0.0 . 20 . . Atlas-SNP DUSP5 1847 hgsc.bcm.edu hg19 10 112258097 112258097 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . DUSP5 NM_004419 exon1 c.C218A p.A73E CGCGCGCGCGGCT . 28.0 23.0 21.0 0.0 . 62 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1028253 1028253 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MUC6 NM_005961 exon14 c.G1726T p.D576Y AGGGGTCAGTCTC . 256.0 32.0 143.0 0.0 . 408 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1028287 1028287 + Silent SNP C C G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MUC6 NM_005961 exon14 c.G1692C p.A564A GTTCCCCGCCCGC . 281.0 45.0 171.0 0.0 . 408 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1247915 1247915 + Silent SNP C C T rs377569377 TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MUC5B NM_002458 exon4 c.C270T p.G90G CGACGGCGACGTC . 109.0 44.0 80.0 0.0 . 473 . . Atlas-SNP OR2AG1 144125 hgsc.bcm.edu hg19 11 6806660 6806660 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 OR2AG1,NS,carcinoma,0,2 OR2AG1 NM_001004489 exon1 c.C392A p.T131K CTCTGACATACAT . 164.0 8.0 87.0 0.0 . 57 . . Atlas-SNP OR5T2 219464 hgsc.bcm.edu hg19 11 55999712 55999712 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . OR5T2 NM_001004746 exon1 c.A950G p.Y317C ATGGTGTAAAATA . 94.0 37.0 88.0 0.0 . 107 . . Atlas-SNP CLCF1 23529 hgsc.bcm.edu hg19 11 67135046 67135046 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CLCF1 NM_013246 exon2 c.C68T p.P23L ACTGCAGGGAGGT . 57.0 8.0 43.0 0.0 . 15 . . Atlas-SNP RPUSD4 84881 hgsc.bcm.edu hg19 11 126075666 126075666 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . RPUSD4 NM_001144827 exon4 c.G568T p.V190L CATGCACAGTGAT . 59.0 18.0 35.0 0.0 . 36 . . Atlas-SNP CELA1 1990 hgsc.bcm.edu hg19 12 51723540 51723540 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CELA1 NM_001971 exon7 c.C687A p.S229R GCCCCGGCTGGAC . 58.0 18.0 53.0 0.0 . 39 . . Atlas-SNP MFSD5 84975 hgsc.bcm.edu hg19 12 53647163 53647163 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MFSD5 NM_001170790 exon2 c.G865T p.A289S GTGCTGGCTGTAG . 45.0 19.0 39.0 0.0 . 40 . . Atlas-SNP MUCL1 118430 hgsc.bcm.edu hg19 12 55248916 55248916 + Silent SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MUCL1 NM_058173 exon2 c.T75A p.A25A AACAGCTGCTCCA . 89.0 34.0 86.0 0.0 . 11 . . Atlas-SNP LEMD3 23592 hgsc.bcm.edu hg19 12 65563653 65563653 + Missense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . LEMD3 NM_001167614 exon1 c.C277T p.P93S GTCCGGCCGGTCT . 779.0 304.0 737.0 1.0 . 68 . . Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70953387 70953387 + Missense_Mutation SNP G G C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PTPRB NM_001109754 exon18 c.C4450G p.L1484V ACATAAGACTGGG . 111.0 52.0 115.0 0.0 . 676 . . Atlas-SNP FBXW8 26259 hgsc.bcm.edu hg19 12 117383227 117383227 + Missense_Mutation SNP A A T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FBXW8 NM_153348 exon3 c.A482T p.Q161L TGTGCCAGCAGGA . 82.0 24.0 76.0 0.0 . 53 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 129566302 129566302 + Splice_Site SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TMEM132D NM_133448 exon8 c.1923+2T>C . TTTTTTACCTGAA . 104.0 41.0 69.0 0.0 . 299 . . Atlas-SNP ZNF268 10795 hgsc.bcm.edu hg19 12 133781098 133781098 + Silent SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ZNF268 NM_001165881 exon6 c.T2826C p.H942H AACTCATGTAGAT . 8.0 7.0 1.0 0.0 . 71 . . Atlas-SNP POSTN 10631 hgsc.bcm.edu hg19 13 38154710 38154710 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . POSTN NM_006475 exon11 c.A1517G p.D506G CGCTTATCTTGTT . 78.0 40.0 70.0 0.0 . 161 . . Atlas-SNP IPO4 79711 hgsc.bcm.edu hg19 14 24653203 24653203 + Splice_Site SNP C C G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . IPO4 NM_024658 exon19 c.1869+1G>C . TGCTCACCACAAT . 45.0 18.0 44.0 0.0 . 74 . . Atlas-SNP TRAPPC6B 122553 hgsc.bcm.edu hg19 14 39623438 39623438 + Nonsense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TRAPPC6B NM_001079537 exon4 c.C328T p.Q110X AATACTGTTTTCC . 89.0 21.0 54.0 0.0 . 13 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96809568 96809568 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ATG2B NM_018036 exon5 c.A632G p.H211R GGTTGATGCACAT . 51.0 33.0 99.0 0.0 . 169 . . Atlas-SNP PLA2G4E 123745 hgsc.bcm.edu hg19 15 42287601 42287601 + Silent SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PLA2G4E NM_001206670 exon12 c.C1204T p.L402L AGTCCAGGAGGTT . 84.0 30.0 65.0 0.0 . 60 . . Atlas-SNP CD19 930 hgsc.bcm.edu hg19 16 28947906 28947906 + Missense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 CD19,NS,neuroblastoma,0,1 CD19 NM_001178098 exon7 c.C1069T p.P357S CCCACACCCACCT . 37.0 18.0 33.0 0.0 . 65 . . Atlas-SNP FAM65A 79567 hgsc.bcm.edu hg19 16 67575468 67575468 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FAM65A NM_001193523 exon11 c.G997A p.E333K AGCCTGGAAGTCA . 57.0 41.0 94.0 0.0 . 104 . . Atlas-SNP AKAP10 11216 hgsc.bcm.edu hg19 17 19827755 19827755 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . AKAP10 NM_007202 exon11 c.G1717T p.D573Y CTGGATCCAGACT . 294.0 67.0 328.0 0.0 . 47 . . Atlas-SNP TAOK1 57551 hgsc.bcm.edu hg19 17 27869796 27869796 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TAOK1 NM_020791 exon20 c.A2762G p.H921R GACCTCACTGGGG . 173.0 75.0 143.0 0.0 . 151 . . Atlas-SNP HCRT 3060 hgsc.bcm.edu hg19 17 40336391 40336391 + Silent SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . HCRT NM_001524 exon2 c.C177T p.H59H GGCCGCGTGATTG . 49.0 8.0 44.0 0.0 . 3 . . Atlas-SNP TMC6 11322 hgsc.bcm.edu hg19 17 76121927 76121927 + Missense_Mutation SNP G G T rs117065924 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TMC6 NM_001127198 exon5 c.C310A p.R104S CCGTGCGGTTGTA . 111.0 22.0 135.0 0.0 . 42 . G|0.996;A|0.004 Atlas-SNP MC2R 4158 hgsc.bcm.edu hg19 18 13884907 13884907 + Missense_Mutation SNP G G T rs202040791 TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MC2R NM_000529 exon2 c.C611A p.T204N TTCCTGGTGTGGG . 158.0 74.0 136.0 0.0 . 78 . . Atlas-SNP ATP8B1 5205 hgsc.bcm.edu hg19 18 55373803 55373803 + Silent SNP G G C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ATP8B1 NM_005603 exon3 c.C198G p.V66V TGCTTTGACTTGC . 74.0 6.0 93.0 0.0 . 126 . . Atlas-SNP SEC11C 90701 hgsc.bcm.edu hg19 18 56819870 56819870 + Missense_Mutation SNP A A T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SEC11C NM_033280 exon3 c.A300T p.E100D AGTTGAAGGACGA . 107.0 45.0 122.0 0.0 . 17 . . Atlas-SNP EMR1 2015 hgsc.bcm.edu hg19 19 6928158 6928158 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . EMR1 NM_001974 exon17 c.G2225A p.C742Y ACAGCTGCTGGCT . 30.0 20.0 42.0 0.0 . 153 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 8994527 8994527 + Missense_Mutation SNP G G C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MUC16 NM_024690 exon64 c.C41365G p.L13789V TCAGGAGATGGCT . 82.0 54.0 134.0 0.0 . 4315 . . Atlas-SNP GGN 199720 hgsc.bcm.edu hg19 19 38876196 38876196 + Missense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . GGN NM_152657 exon3 c.C1706A p.A569D TGAGAGGCCCCGC . 153.0 44.0 134.0 0.0 . 50 . . Atlas-SNP HNRNPL 3191 hgsc.bcm.edu hg19 19 39329533 39329533 + Splice_Site SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . HNRNPL NM_001533 exon10 c.1355+1G>A . CACCTACCAGACA . 47.0 21.0 62.0 0.0 . 67 . . Atlas-SNP FCGBP 8857 hgsc.bcm.edu hg19 19 40408687 40408687 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FCGBP NM_003890 exon8 c.G4152T p.Q1384H CATCTGCTGGTAG . 298.0 106.0 328.0 0.0 . 416 . . Atlas-SNP KCNC3 3748 hgsc.bcm.edu hg19 19 50826433 50826433 + Missense_Mutation SNP C C T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KCNC3 NM_004977 exon2 c.G1777A p.G593S TGATGCCCCCGCT . 29.0 8.0 45.0 0.0 . 41 . . Atlas-SNP POLD1 5424 hgsc.bcm.edu hg19 19 50921101 50921101 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . POLD1 NM_002691 exon27 c.G3221A p.R1074Q GCAGCCGGGACTG . 148.0 68.0 129.0 0.0 . 174 . . Atlas-SNP LAIR1 3903 hgsc.bcm.edu hg19 19 54868132 54868132 + Missense_Mutation SNP A A C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . LAIR1 NM_002287 exon6 c.T551G p.F184C AGGCAGAAGAGGA . 96.0 41.0 74.0 0.0 . 44 . . Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55494016 55494016 + Missense_Mutation SNP T T A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . NLRP2 NM_017852 exon6 c.T950A p.L317H CCGTCCTCCTGGG . 74.0 26.0 71.0 0.0 . 161 . . Atlas-SNP BRWD1 54014 hgsc.bcm.edu hg19 21 40608663 40608663 + Missense_Mutation SNP T T C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 BRWD1_ENST00000333229,caecum,carcinoma,0,2 BRWD1 NM_018963 exon23 c.A2624G p.N875S TGCAAATTGATGC . 95.0 33.0 89.0 0.0 . 325 . . Atlas-SNP PES1 23481 hgsc.bcm.edu hg19 22 30985180 30985180 + Missense_Mutation SNP A A T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . PES1 NM_014303 exon2 c.T102A p.F34L TCACCTAAAGTCA . 62.0 31.0 28.0 0.0 . 55 . . Atlas-SNP CACNA1I 8911 hgsc.bcm.edu hg19 22 40058779 40058779 + Splice_Site SNP A A T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . CACNA1I NM_021096 exon18 c.3373-2A>T . CTTGCTAGACCCT . 42.0 25.0 56.0 0.0 . 264 . . Atlas-SNP SGSM3 27352 hgsc.bcm.edu hg19 22 40804805 40804805 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . SGSM3 NM_015705 exon18 c.G1861T p.E621X TTGGATGAAGATG . 71.0 29.0 72.0 0.0 . 48 . . Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41569712 41569712 + Missense_Mutation SNP A A G novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . EP300 NM_001429 exon29 c.A4703G p.K1568R GCAACAAGAAGAA . 301.0 115.0 259.0 0.0 . 367 . . Atlas-SNP PNPLA5 150379 hgsc.bcm.edu hg19 22 44285214 44285214 + Missense_Mutation SNP G G C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 PNPLA5,NS,carcinoma,0,1 PNPLA5 NM_138814 exon4 c.C697G p.L233V CCTCGAGGCTGGG . 40.0 14.0 38.0 0.0 . 46 . . Atlas-SNP HUWE1 10075 hgsc.bcm.edu hg19 X 53617377 53617377 + Missense_Mutation SNP G G A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . HUWE1 NM_031407 exon35 c.C4178T p.A1393V GACTCTGCCCTTT . 43.0 37.0 50.0 0.0 . 724 . . Atlas-SNP MAGEH1 28986 hgsc.bcm.edu hg19 X 55478905 55478905 + Missense_Mutation SNP C C A novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . MAGEH1 NM_014061 exon1 c.C98A p.T33N CCGAGACCCCTAT . 58.0 44.0 46.0 0.0 . 37 . . Atlas-SNP FANCB 2187 hgsc.bcm.edu hg19 X 14863080 14863093 + Frame_Shift_Del DEL AGTTACCACTTTCT AGTTACCACTTTCT - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 AGTTACCACTTTCT AGTTACCACTTTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FANCB NM_152633 exon7 c.1813_1826del p.605_609del . . 92.0 54.0 183.0 0.0 . 78 . . Atlas-INDEL KRTAP1-3 81850 hgsc.bcm.edu hg19 17 39190968 39190968 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KRTAP1-3 NM_030966 exon1 c.107delA p.Q36fs . . 83.0 14.0 69.0 0.0 . 18 . . Atlas-INDEL KRTAP22-1 337979 hgsc.bcm.edu hg19 21 31973566 31973577 + In_Frame_Del DEL TGGTTTTCTGGC TGGTTTTCTGGC - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 TGGTTTTCTGGC TGGTTTTCTGGC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KRTAP22-1 NM_181620 exon1 c.126_137del p.42_46del . . 75.0 20.0 84.0 0.0 . 16 . . Atlas-INDEL TIRAP 114609 hgsc.bcm.edu hg19 11 126162928 126162930 + In_Frame_Del DEL AGT AGT - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 AGT AGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TIRAP NM_148910 exon5 c.623_625del p.208_209del . . 59.0 14.0 58.0 0.0 . 37 . . Atlas-INDEL GP1BB 2812 hgsc.bcm.edu hg19 22 19711909 19711931 + Frame_Shift_Del DEL GGCCCGCGCTCGCGCCGCAGCCC GGCCCGCGCTCGCGCCGCAGCCC - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 GGCCCGCGCTCGCGCCGCAGCCC GGCCCGCGCTCGCGCCGCAGCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . GP1BB NM_000407 exon2 c.542_564del p.181_188del . . 652.0 85.0 613.0 0.0 . 1 . . Atlas-INDEL LPCAT4 254531 hgsc.bcm.edu hg19 15 34659273 34659274 + Frame_Shift_Ins INS - - C novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . LPCAT4 NM_153613 exon1 c.29_30insG p.A10fs . . 178.0 18.0 149.0 0.0 . 36 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74286009 74286012 + Frame_Shift_Del DEL CTTA CTTA - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 CTTA CTTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . ALB NM_000477 exon14 c.1823_1826del p.608_609del . . 168.0 67.0 166.0 0.0 . 132 . . Atlas-INDEL KRTAP1-1 81851 hgsc.bcm.edu hg19 17 39197544 39197544 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . KRTAP1-1 NM_030967 exon1 c.107delA p.Q36fs . . 83.0 21.0 82.0 0.0 . 23 . . Atlas-INDEL FANCB 2187 hgsc.bcm.edu hg19 X 14863073 14863078 + In_Frame_Del DEL TTAGGA TTAGGA - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 TTAGGA TTAGGA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . FANCB NM_152633 exon7 c.1828_1833del p.610_611del . . 98.0 54.0 178.0 0.0 . 78 . . Atlas-INDEL TCEANC 170082 hgsc.bcm.edu hg19 X 13680785 13680786 + Frame_Shift_Del DEL AC AC - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 AC AC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TCEANC NM_152634 exon4 c.247_248del p.83_83del . . 113.0 87.0 92.0 0.0 . 29 . . Atlas-INDEL TIRAP 114609 hgsc.bcm.edu hg19 11 126162932 126162935 + Frame_Shift_Del DEL AAAG AAAG - novel TCGA-DD-AACH-01A-11D-A40R-10 TCGA-DD-AACH-10A-01D-A40U-10 AAAG AAAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8cb4838f-fd57-4ed4-8bc8-5d42e7fb0fac 62e49f6d-fde8-4259-a620-199fc7b700e0 . TIRAP NM_148910 exon5 c.627_630del p.209_210del . . 61.0 12.0 58.0 0.0 . 37 . . Atlas-INDEL