Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CDK11B 984 hgsc.bcm.edu hg19 1 1571767 1571767 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CDK11B NM_033486 exon18 c.A1988T p.E663V GGGTGCTCGCTGA . 91.0 38.0 96.0 0.0 . 37 . . Atlas-SNP ESPN 83715 hgsc.bcm.edu hg19 1 6500800 6500800 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ESPN NM_031475 exon4 c.G790T p.G264W CACGGCGGGGAGA . 732.0 277.0 759.0 1.0 . 32 . . Atlas-SNP H6PD 9563 hgsc.bcm.edu hg19 1 9324489 9324489 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . H6PD NM_004285 exon5 c.T1937A p.I646N TCCGGATCCCCTA . 119.0 12.0 155.0 0.0 . 71 . . Atlas-SNP SPSB1 80176 hgsc.bcm.edu hg19 1 9416188 9416188 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 SPSB1,right_lower_lobe,carcinoma,0,1 SPSB1 NM_025106 exon2 c.G238A p.V80M CATCCGGTGGCCC . 134.0 13.0 129.0 0.0 . 22 . . Atlas-SNP CLCN6 1185 hgsc.bcm.edu hg19 1 11897423 11897423 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CLCN6 NM_001286 exon20 c.A2162G p.Y721C ACCTATACCCTGA . 90.0 9.0 83.0 0.0 . 77 . . Atlas-SNP TNFRSF1B 7133 hgsc.bcm.edu hg19 1 12251908 12251908 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TNFRSF1B NM_001066 exon4 c.A385G p.S129G GCGCTGAGCAAGC . 174.0 32.0 218.0 0.0 . 28 . . Atlas-SNP EPHB2 2048 hgsc.bcm.edu hg19 1 23235588 23235588 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EPHB2 NM_004442 exon13 c.T2429C p.V810A GTGATGTGTGGAG . 112.0 41.0 137.0 0.0 . 257 . . Atlas-SNP PHC2 1912 hgsc.bcm.edu hg19 1 33794569 33794569 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PHC2 NM_198040 exon13 c.A2324G p.H775R CGCATATGCATGT . 47.0 11.0 58.0 0.0 . 78 . . Atlas-SNP RLF 6018 hgsc.bcm.edu hg19 1 40701476 40701476 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RLF NM_012421 exon8 c.G1102T p.G368C GATGCTGGTCTTG . 262.0 42.0 279.0 0.0 . 152 . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62263013 62263013 + Nonsense_Mutation SNP C C T rs200079447 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 INADL,NS,carcinoma,0,2 INADL NM_176877 exon11 c.C1315T p.R439X GTATTACGAAATG . 126.0 46.0 107.0 0.0 . 179 . C|0.999;T|0.001 Atlas-SNP IL12RB2 3595 hgsc.bcm.edu hg19 1 67855778 67855778 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IL12RB2 NM_001559 exon15 c.T2013C p.N671N AGCAAATAGCACT . 66.0 8.0 94.0 0.0 . 94 . . Atlas-SNP ELTD1 64123 hgsc.bcm.edu hg19 1 79383362 79383362 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ELTD1 NM_022159 exon12 c.A1706T p.N569I ATAAAGTTGTTTT . 359.0 51.0 371.0 0.0 . 143 . . Atlas-SNP MCOLN3 55283 hgsc.bcm.edu hg19 1 85487861 85487861 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MCOLN3 NM_018298 exon11 c.C1212T p.T404T CTGAAGGGTCAAA . 212.0 82.0 208.0 0.0 . 74 . . Atlas-SNP PKN2 5586 hgsc.bcm.edu hg19 1 89226006 89226006 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PKN2 NM_006256 exon3 c.G451A p.V151I CTTAAAGTAAAAC . 325.0 129.0 345.0 0.0 . 109 . . Atlas-SNP EVI5 7813 hgsc.bcm.edu hg19 1 93131551 93131551 + Splice_Site SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EVI5 NM_005665 exon12 c.1291-2A>C . AACCTCTGCCAAG . 58.0 12.0 46.0 0.0 . 94 . . Atlas-SNP SLC44A3 126969 hgsc.bcm.edu hg19 1 95330430 95330430 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC44A3 NM_001114106 exon11 c.A1370T p.Y457F TCATGTACATGCA . 48.0 5.0 46.0 0.0 . 109 . . Atlas-SNP RSBN1 54665 hgsc.bcm.edu hg19 1 114354782 114354782 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RSBN1 NM_018364 exon1 c.G253C p.V85L GTTTAACTCCCCG . 61.0 11.0 70.0 0.0 . 71 . . Atlas-SNP CRNN 49860 hgsc.bcm.edu hg19 1 152382558 152382558 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CRNN NM_016190 exon3 c.G1000T p.G334C TCCTGCCTTGACC . 308.0 56.0 147.0 0.0 . 78 . . Atlas-SNP SPRR2A 6700 hgsc.bcm.edu hg19 1 153029021 153029021 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SPRR2A NM_005988 exon2 c.A191T p.Q64L TTTGACTGGCAGG . 170.0 11.0 85.0 0.0 . 9 . . Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154744565 154744565 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KCNN3 NM_001204087 exon3 c.T1334C p.F445S GTGTTGAAGTTGA . 226.0 10.0 105.0 0.0 . 141 . . Atlas-SNP IQGAP3 128239 hgsc.bcm.edu hg19 1 156496381 156496381 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IQGAP3 NM_178229 exon38 c.A4793T p.Q1598L TGGAGCTGCAGGA . 116.0 10.0 66.0 0.0 . 146 . . Atlas-SNP GPATCH4 54865 hgsc.bcm.edu hg19 1 156565217 156565217 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GPATCH4 NM_015590 exon8 c.G916A p.E306K TCTTCTCCTCTTC . 236.0 12.0 110.0 0.0 . 34 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156640722 156640722 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NES NM_006617 exon4 c.A3258T p.S1086S AGGCTCTGACCCC . 318.0 22.0 152.0 0.0 . 196 . . Atlas-SNP ISG20L2 81875 hgsc.bcm.edu hg19 1 156697395 156697395 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ISG20L2 NM_030980 exon1 c.A50T p.K17M AATGCCTTTTTGG . 112.0 13.0 38.0 0.0 . 43 . . Atlas-SNP KIRREL 55243 hgsc.bcm.edu hg19 1 158064686 158064686 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KIRREL NM_018240 exon15 c.T2050A p.Y684N CTGTCCTACGAGA . 429.0 35.0 242.0 0.0 . 346 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158592934 158592934 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SPTA1 NM_003126 exon43 c.G5959T p.E1987X TGATCTCGGGAAG . 391.0 39.0 182.0 0.0 . 720 . . Atlas-SNP VSIG8 391123 hgsc.bcm.edu hg19 1 159825697 159825697 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . VSIG8 NM_001013661 exon6 c.G947C p.C316S TCGCCGCAGGCCC . 157.0 27.0 52.0 0.0 . 24 . . Atlas-SNP VSIG8 391123 hgsc.bcm.edu hg19 1 159825698 159825698 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . VSIG8 NM_001013661 exon6 c.T946A p.C316S CGCCGCAGGCCCC . 157.0 28.0 55.0 0.0 . 24 . . Atlas-SNP NDUFS2 4720 hgsc.bcm.edu hg19 1 161180452 161180452 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NDUFS2 NM_001166159 exon9 c.A938T p.Q313L ACGACCAGGTTGA . 321.0 22.0 145.0 0.0 . 33 . . Atlas-SNP DUSP27 92235 hgsc.bcm.edu hg19 1 167096866 167096866 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DUSP27 NM_001080426 exon5 c.T2498A p.L833Q TGGACCTAAAGGA . 343.0 30.0 164.0 0.0 . 235 . . Atlas-SNP SUCO 51430 hgsc.bcm.edu hg19 1 172577940 172577940 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . NM_014283 exon23 c.A3319T p.K1107X GAAAAGAAGGTAA . 669.0 61.0 312.0 0.0 . . . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175293604 175293604 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TNR NM_003285 exon22 c.A3845G p.D1282G TCATTGTCTCTAT . 298.0 70.0 125.0 0.0 . 399 . . Atlas-SNP TNR 7143 hgsc.bcm.edu hg19 1 175334337 175334337 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TNR NM_003285 exon12 c.C2396G p.P799R GCTGGGGGAGATG . 266.0 144.0 116.0 0.0 . 399 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179497527 179497527 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . AXDND1 NM_144696 exon23 c.T2676C p.H892H TGTTCATTCCAAA . 153.0 24.0 64.0 0.0 . 142 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181685267 181685267 + Splice_Site SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CACNA1E NM_001205293 exon10 c.1315+2T>A . TGTGGGTGAGTGG . 126.0 10.0 67.0 0.0 . 778 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181767735 181767735 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CACNA1E NM_001205293 exon48 c.A6707G p.H2236R CCCTGCACGAAGA . 126.0 14.0 72.0 0.0 . 778 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182811771 182811771 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DHX9 NM_001357 exon2 c.A70G p.R24G GAAATTAGAGCAG . 270.0 26.0 123.0 0.0 . 114 . . Atlas-SNP DHX9 1660 hgsc.bcm.edu hg19 1 182827944 182827944 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DHX9 NM_001357 exon10 c.A977G p.Q326R AAAACCAAGTGGG . 309.0 25.0 131.0 0.0 . 114 . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 185987388 185987388 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . HMCN1 NM_031935 exon34 c.A5374G p.I1792V CTGGTTATTGCTC . 240.0 26.0 123.0 0.0 . 797 . . Atlas-SNP LMOD1 25802 hgsc.bcm.edu hg19 1 201915422 201915422 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LMOD1 NM_012134 exon1 c.A47T p.D16V TCGATGTCGGGGT . 252.0 25.0 112.0 0.0 . 59 . . Atlas-SNP LAX1 54900 hgsc.bcm.edu hg19 1 203734781 203734781 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LAX1 NM_017773 exon1 c.A88T p.R30X CTGGACAGGTGAG . 210.0 20.0 104.0 0.0 . 48 . . Atlas-SNP ACBD3 64746 hgsc.bcm.edu hg19 1 226340311 226340311 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ACBD3 NM_022735 exon7 c.C1100T p.P367L ATTACTGGAAGAG . 175.0 106.0 77.0 0.0 . 38 . . Atlas-SNP NID1 4811 hgsc.bcm.edu hg19 1 236205357 236205357 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NID1 NM_002508 exon4 c.A988T p.S330C GGACGCTGGGCAC . 212.0 27.0 137.0 0.0 . 196 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237729922 237729922 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RYR2 NM_001035 exon28 c.C3270T p.A1090A CCGTGCCGAGAAG . 284.0 54.0 122.0 0.0 . 1273 . . Atlas-SNP RYR2 6262 hgsc.bcm.edu hg19 1 237972236 237972236 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RYR2 NM_001035 exon100 c.A14334T p.V4778V TGTTGTATACCTA . 281.0 24.0 133.0 0.0 . 1273 . . Atlas-SNP CHRM3 1131 hgsc.bcm.edu hg19 1 240072372 240072372 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CHRM3 NM_000740 exon5 c.C1621G p.P541A GTGAACCCCGTGT . 346.0 28.0 183.0 0.0 . 118 . . Atlas-SNP ZNF124 7678 hgsc.bcm.edu hg19 1 247320351 247320351 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF124 NM_003431 exon4 c.T387C p.S129S AAGGTGACTGGAA . 213.0 15.0 100.0 0.0 . 39 . . Atlas-SNP OR2AK2 391191 hgsc.bcm.edu hg19 1 248128887 248128887 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR2AK2 NM_001004491 exon1 c.A254C p.D85A TCGTTGACCTCAT . 108.0 14.0 65.0 0.0 . 90 . . Atlas-SNP OR2T12 127064 hgsc.bcm.edu hg19 1 248458294 248458294 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR2T12 NM_001004692 exon1 c.C587A p.A196D TACATGGCGTTTT . 952.0 81.0 527.0 0.0 . 113 . . Atlas-SNP SOX11 6664 hgsc.bcm.edu hg19 2 5833868 5833868 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SOX11 NM_003108 exon1 c.G1015A p.V339M CGCTCGGTGTCCA . 64.0 7.0 53.0 0.0 . 69 . . Atlas-SNP FAM179A 165186 hgsc.bcm.edu hg19 2 29226472 29226472 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM179A NM_199280 exon6 c.C754T p.R252C CCCTCCCGTGTGC . 279.0 38.0 251.0 0.0 . 106 . . Atlas-SNP XPO1 7514 hgsc.bcm.edu hg19 2 61711207 61711207 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . XPO1 NM_003400 exon21 c.T2542G p.F848V AGAAAAAGTTCGT . 174.0 41.0 127.0 0.0 . 108 . . Atlas-SNP CCT7 10574 hgsc.bcm.edu hg19 2 73477551 73477551 + Silent SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CCT7 NM_006429 exon10 c.C1188A p.V396V GATCGTCAGGAGG . 98.0 5.0 108.0 0.0 . 60 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 317.0 17.0 195.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613037 73613037 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALMS1 NM_015120 exon1 c.A41T p.E14V TGGAGGAGGAGGA . 321.0 23.0 195.0 0.0 . 384 . . Atlas-SNP SLC4A5 57835 hgsc.bcm.edu hg19 2 74475529 74475529 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC4A5 NM_021196 exon13 c.A1738C p.S580R CCGTGCTGCTGAG . 125.0 39.0 93.0 0.0 . 215 . . Atlas-SNP PROM2 150696 hgsc.bcm.edu hg19 2 95943753 95943753 + Splice_Site SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PROM2 NM_144707 exon8 c.1050+1G>T . CAGGAGGTGAGAG . 59.0 25.0 53.0 0.0 . 78 . . Atlas-SNP TBC1D8 11138 hgsc.bcm.edu hg19 2 101666875 101666875 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TBC1D8 NM_001102426 exon5 c.A815C p.Q272P GTGATCTGGCTCG . 66.0 14.0 60.0 0.0 . 169 . . Atlas-SNP IL1R1 3554 hgsc.bcm.edu hg19 2 102789169 102789169 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IL1R1 NM_000877 exon8 c.A862G p.R288G AACAAAAGAAGGA . 208.0 35.0 170.0 0.0 . 52 . . Atlas-SNP CCDC138 165055 hgsc.bcm.edu hg19 2 109408129 109408129 + Splice_Site SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CCDC138 NM_144978 exon4 c.267-2A>T . TTTTAAAGCCTAG . 85.0 15.0 92.0 0.0 . 49 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125204373 125204373 + Silent SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CNTNAP5 NM_130773 exon6 c.C777G p.T259T TGCCACCCTGGGC . 152.0 53.0 165.0 0.0 . 405 . . Atlas-SNP CNTNAP5 129684 hgsc.bcm.edu hg19 2 125504881 125504881 + Missense_Mutation SNP T T G rs35085748 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CNTNAP5 NM_130773 exon14 c.T2150G p.V717G CTGGGGTCCAGCA . 167.0 20.0 158.0 0.0 . 405 . T|0.993;C|0.007 Atlas-SNP CYP27C1 339761 hgsc.bcm.edu hg19 2 127960995 127960995 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CYP27C1 NM_001001665 exon2 c.A131G p.E44G ACGGTTTCTCCAT . 95.0 14.0 94.0 0.0 . 52 . . Atlas-SNP LIMS2 55679 hgsc.bcm.edu hg19 2 128412026 128412026 + Missense_Mutation SNP C C A rs371008915 alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LIMS2 NM_017980 exon4 c.G403T p.D135Y CCAGGTCAGCCAG . 193.0 76.0 207.0 0.0 . 33 . . Atlas-SNP TMEM163 81615 hgsc.bcm.edu hg19 2 135308172 135308172 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMEM163 NM_030923 exon4 c.G427T p.A143S CAGCGGCCGCGTT . 98.0 18.0 80.0 0.0 . 34 . . Atlas-SNP ZEB2 9839 hgsc.bcm.edu hg19 2 145156008 145156008 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZEB2 NM_014795 exon8 c.A2746T p.S916C GAATACTGGTCTG . 180.0 42.0 152.0 0.0 . 218 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149633278 149633278 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KIF5C NM_004522 exon1 c.C92A p.P31H TCATCCCCAAATT . 282.0 84.0 277.0 0.0 . 166 . . Atlas-SNP KIF5C 3800 hgsc.bcm.edu hg19 2 149633279 149633279 + Silent SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KIF5C NM_004522 exon1 c.C93G p.P31P CATCCCCAAATTT . 282.0 85.0 275.0 0.0 . 166 . . Atlas-SNP XIRP2 129446 hgsc.bcm.edu hg19 2 167992512 167992512 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . XIRP2 NM_001199143 exon3 c.G502T p.G168C AAGAAAGGCAAGG . 75.0 5.0 61.0 0.0 . 914 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170136923 170136923 + Silent SNP G G T rs373521676 alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LRP2 NM_004525 exon11 c.C1278A p.A426A ACCCACGGCCACT . 115.0 5.0 118.0 0.0 . 751 . . Atlas-SNP PPIG 9360 hgsc.bcm.edu hg19 2 170488352 170488352 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PPIG NM_004792 exon11 c.A838G p.I280V CCTCCTATACCTG . 80.0 4.0 78.0 0.0 . 100 . . Atlas-SNP CIR1 9541 hgsc.bcm.edu hg19 2 175213317 175213317 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CIR1 NM_004882 exon10 c.A1261T p.S421C TTCTGCTGTCATT . 95.0 14.0 78.0 0.0 . 38 . . Atlas-SNP HOXD12 3238 hgsc.bcm.edu hg19 2 176965409 176965409 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . HOXD12 NM_021193 exon2 c.A734T p.Q245L ACCAGCAAGTCAA . 345.0 53.0 320.0 0.0 . 25 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179424917 179424917 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TTN NM_001267550 exon326 c.C85942A p.P28648T ACACTGGATCTTC . 161.0 46.0 147.0 0.0 . 18412 . . Atlas-SNP ZSWIM2 151112 hgsc.bcm.edu hg19 2 187713768 187713768 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZSWIM2 NM_182521 exon1 c.C90G p.S30R GTAGATGCTGCTA . 168.0 48.0 136.0 0.0 . 119 . . Atlas-SNP TMEFF2 23671 hgsc.bcm.edu hg19 2 192862989 192862989 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMEFF2 NM_016192 exon7 c.A744T p.A248A TGTACCTGCATAA . 52.0 9.0 47.0 0.0 . 54 . . Atlas-SNP NRP2 8828 hgsc.bcm.edu hg19 2 206641001 206641001 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NRP2 NM_018534 exon16 c.A2472T p.T824T GCCCACAGTGGAC . 53.0 9.0 54.0 0.0 . 179 . . Atlas-SNP PTPRN 5798 hgsc.bcm.edu hg19 2 220156208 220156208 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PTPRN NM_002846 exon20 c.A2713T p.I905F CGATGATGGGGCA . 246.0 40.0 240.0 0.0 . 138 . . Atlas-SNP ACSL3 2181 hgsc.bcm.edu hg19 2 223795465 223795465 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ACSL3 NM_203372 exon13 c.G1667T p.G556V AAAATGGACAAAG . 152.0 50.0 149.0 0.0 . 107 . . Atlas-SNP SP140 11262 hgsc.bcm.edu hg19 2 231109739 231109739 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SP140 NM_007237 exon6 c.C608T p.P203L CTCTCCCAAAGGC . 70.0 25.0 64.0 0.0 . 121 . . Atlas-SNP TRPM8 79054 hgsc.bcm.edu hg19 2 234854632 234854632 + Missense_Mutation SNP C C T rs200066478 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TRPM8 NM_024080 exon7 c.C832T p.R278W AAGCTCCGGAATC . 119.0 13.0 120.0 0.0 . 146 . . Atlas-SNP FBLN2 2199 hgsc.bcm.edu hg19 3 13659731 13659731 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FBLN2 NM_001998 exon6 c.T1885A p.C629S TACCACTGTGCCT . 79.0 17.0 97.0 0.0 . 137 . . Atlas-SNP BTD 686 hgsc.bcm.edu hg19 3 15686472 15686472 + Missense_Mutation SNP A A G rs148193489 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . BTD NM_000060 exon4 c.A1109G p.Y370C ATCCGTACTGTGA . 132.0 24.0 124.0 0.0 . 49 . A|1.000;G|0.000 Atlas-SNP KCNH8 131096 hgsc.bcm.edu hg19 3 19575195 19575195 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KCNH8 NM_144633 exon16 c.T2928C p.H976H AGCTCATGAGCAA . 90.0 15.0 94.0 0.0 . 189 . . Atlas-SNP DCLK3 85443 hgsc.bcm.edu hg19 3 36778744 36778744 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DCLK3 NM_033403 exon2 c.C1407T p.H469H CTTGTCGTGCATG . 155.0 32.0 152.0 0.0 . 95 . . Atlas-SNP LRRFIP2 9209 hgsc.bcm.edu hg19 3 37133031 37133031 + Splice_Site SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LRRFIP2 NM_006309 exon20 c.1036-2A>G . ATATCCTGCAGGA . 92.0 8.0 98.0 0.0 . 71 . . Atlas-SNP CXCR6 10663 hgsc.bcm.edu hg19 3 45988540 45988540 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CXCR6 NM_006564 exon2 c.T567A p.T189T TTCCACTGTGGTT . 86.0 16.0 79.0 0.0 . 17 . . Atlas-SNP MST1R 4486 hgsc.bcm.edu hg19 3 49928638 49928638 + Silent SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MST1R NM_002447 exon17 c.G3636T p.R1212R GCAGTTCCGCGCA . 51.0 9.0 58.0 0.0 . 205 . . Atlas-SNP DOCK3 1795 hgsc.bcm.edu hg19 3 51266174 51266174 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DOCK3 NM_004947 exon18 c.A1730G p.N577S GCCCTAATATTCC . 134.0 29.0 133.0 0.0 . 397 . . Atlas-SNP GRM2 2912 hgsc.bcm.edu hg19 3 51746843 51746843 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GRM2 NM_000839 exon3 c.T805A p.F269I GTCCTGTTCACCC . 75.0 20.0 75.0 0.0 . 91 . . Atlas-SNP OR5H1 26341 hgsc.bcm.edu hg19 3 97852435 97852435 + Silent SNP A A T rs376802329 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR5H1 NM_001005338 exon1 c.A894T p.T298T AGTCACAGTTTCA . 68.0 10.0 66.0 0.0 . 71 . . Atlas-SNP KCNAB1 7881 hgsc.bcm.edu hg19 3 156009781 156009781 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KCNAB1 NM_172159 exon1 c.G85A p.A29T TCCACCGCCCCCA . 226.0 25.0 253.0 0.0 . 176 . . Atlas-SNP PDE6B 5158 hgsc.bcm.edu hg19 4 656887 656887 + Splice_Site SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PDE6B NM_001145291 exon15 c.1833-2A>T . TGTAACAGGTCCC . 114.0 11.0 101.0 0.0 . 80 . . Atlas-SNP SLC2A9 56606 hgsc.bcm.edu hg19 4 9828041 9828041 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC2A9 NM_020041 exon12 c.A1603G p.K535E TTATCTTACCATC . 146.0 23.0 117.0 0.0 . 158 . . Atlas-SNP PPARGC1A 10891 hgsc.bcm.edu hg19 4 23826123 23826123 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PPARGC1A NM_013261 exon6 c.A766G p.T256A AAGTTGTTGGTTT . 44.0 7.0 47.0 0.0 . 129 . . Atlas-SNP SEL1L3 23231 hgsc.bcm.edu hg19 4 25836852 25836852 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SEL1L3 NM_015187 exon3 c.A827T p.E276V GTGGCCTCCAGCT . 99.0 21.0 87.0 0.0 . 62 . . Atlas-SNP RFC1 5981 hgsc.bcm.edu hg19 4 39304373 39304373 + Missense_Mutation SNP C C T rs199688793 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RFC1 NM_001204747 exon17 c.G2327A p.R776Q TCAACCCGAGGTC . 281.0 60.0 256.0 0.0 . 114 . . Atlas-SNP NFXL1 152518 hgsc.bcm.edu hg19 4 47900865 47900865 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NFXL1 NM_152995 exon8 c.A998T p.Q333L CAAGGCTGACAGC . 221.0 51.0 175.0 0.0 . 79 . . Atlas-SNP YTHDC1 91746 hgsc.bcm.edu hg19 4 69198561 69198561 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . YTHDC1 NM_001031732 exon6 c.A978G p.S326S CTTTTCTGAACCT . 59.0 15.0 62.0 0.0 . 81 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88534079 88534079 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DSPP NM_014208 exon4 c.T741G p.S247R TCCTAGTGGGAAT . 287.0 130.0 242.0 0.0 . 174 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88534092 88534092 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DSPP NM_014208 exon4 c.G754C p.D252H GGAGCAGATGAGG . 272.0 119.0 243.0 0.0 . 174 . . Atlas-SNP CENPE 1062 hgsc.bcm.edu hg19 4 104066278 104066278 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CENPE NM_001813 exon32 c.A4786T p.K1596X CTCTTTTCATTTC . 56.0 9.0 55.0 0.0 . 253 . . Atlas-SNP TET2 54790 hgsc.bcm.edu hg19 4 106157691 106157691 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TET2 NM_001127208 exon3 c.C2592T p.H864H GCATCACATGCAA . 252.0 62.0 259.0 0.0 . 1762 . . Atlas-SNP BBS12 166379 hgsc.bcm.edu hg19 4 123663523 123663523 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . BBS12 NM_001178007 exon3 c.C476T p.P159L TGTGTCCTTTTCT . 160.0 37.0 157.0 0.0 . 63 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146770559 146770559 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF827 NM_178835 exon6 c.A2136G p.P712P GCCCTCTGGCATC . 144.0 40.0 121.0 0.0 . 102 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146770637 146770637 + Silent SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF827 NM_178835 exon6 c.C2058G p.V686V TATCGAGACATGG . 122.0 47.0 83.0 0.0 . 102 . . Atlas-SNP MAP9 79884 hgsc.bcm.edu hg19 4 156289851 156289851 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MAP9 NM_001039580 exon5 c.A595T p.T199S GGGCAGTTTCTTT . 141.0 34.0 118.0 0.0 . 79 . . Atlas-SNP CDH18 1016 hgsc.bcm.edu hg19 5 19591188 19591188 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CDH18 NM_001167667 exon7 c.A977G p.E326G ATTCCTTCTCTGG . 78.0 10.0 63.0 0.0 . 561 . . Atlas-SNP NPR3 4883 hgsc.bcm.edu hg19 5 32712409 32712409 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NPR3 NM_000908 exon1 c.G527A p.R176H TCACGCGCGTGGC . 141.0 25.0 106.0 0.0 . 65 . . Atlas-SNP NUP155 9631 hgsc.bcm.edu hg19 5 37370982 37370982 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NUP155 NM_153485 exon1 c.A98G p.Q33R TGCAACTGACGGT . 97.0 12.0 70.0 0.0 . 116 . . Atlas-SNP C9 735 hgsc.bcm.edu hg19 5 39341729 39341729 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 C9,right_upper_lobe,carcinoma,0,1 C9 NM_001737 exon3 c.G257A p.R86Q CACTGTCGTCTGT . 173.0 26.0 146.0 0.0 . 116 . . Atlas-SNP C5orf28 64417 hgsc.bcm.edu hg19 5 43446346 43446346 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C5orf28 NM_022483 exon3 c.A626T p.H209L ACTCCATGTTTTG . 100.0 13.0 87.0 0.0 . 25 . . Atlas-SNP PTCD2 79810 hgsc.bcm.edu hg19 5 71618053 71618053 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PTCD2 NM_024754 exon2 c.A182G p.K61R AACAAAAGAAAGT . 107.0 11.0 99.0 0.0 . 31 . . Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79025753 79025753 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CMYA5 NM_153610 exon2 c.A1165G p.M389V GCAACTATGTTCC . 187.0 25.0 192.0 0.0 . 643 . . Atlas-SNP LIX1 167410 hgsc.bcm.edu hg19 5 96478229 96478229 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LIX1 NM_153234 exon1 c.C52T p.H18Y CTCTGTGAGGCAA . 114.0 19.0 109.0 0.0 . 41 . . Atlas-SNP PAM 5066 hgsc.bcm.edu hg19 5 102326046 102326046 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PAM NM_138822 exon15 c.T1554C p.A518A GGTGGCTCTAGAC . 152.0 17.0 131.0 0.0 . 180 . . Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102432263 102432263 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GIN1 NM_017676 exon7 c.A1276T p.R426X ATTCTCTTATGTA . 123.0 20.0 97.0 0.0 . 53 . . Atlas-SNP TMEM232 642987 hgsc.bcm.edu hg19 5 109954157 109954157 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMEM232 NM_001039763 exon8 c.A875T p.H292L GTCTTATGGAAGA . 99.0 21.0 86.0 0.0 . 57 . . Atlas-SNP APC 324 hgsc.bcm.edu hg19 5 112179022 112179022 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . APC NM_001127510 exon17 c.A7731T p.S2577S TGCTTCATCAGAA . 122.0 14.0 111.0 0.0 . 4158 . . Atlas-SNP MCC 4163 hgsc.bcm.edu hg19 5 112363149 112363149 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MCC NM_001085377 exon19 c.G2910C p.K970N CTTTTTCTTTGCT . 75.0 31.0 60.0 0.0 . 234 . . Atlas-SNP SNCAIP 9627 hgsc.bcm.edu hg19 5 121786551 121786551 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SNCAIP NM_005460 exon10 c.T2009G p.L670R GACAGCTGATGCA . 121.0 10.0 88.0 0.0 . 308 . . Atlas-SNP ALDH7A1 501 hgsc.bcm.edu hg19 5 125903957 125903957 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALDH7A1 NM_001202404 exon9 c.A946T p.R316W CAAACCTCTCCTG . 83.0 10.0 63.0 0.0 . 57 . . Atlas-SNP LMNB1 4001 hgsc.bcm.edu hg19 5 126141268 126141268 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LMNB1 NM_005573 exon3 c.A522G p.E174E GTTGGAAGCCTCC . 75.0 5.0 58.0 0.0 . 49 . . Atlas-SNP ADAMTS19 171019 hgsc.bcm.edu hg19 5 129019947 129019947 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ADAMTS19 NM_133638 exon18 c.C2781T p.C927C AGATTGCGATGCC . 120.0 12.0 123.0 0.0 . 216 . . Atlas-SNP IL5 3567 hgsc.bcm.edu hg19 5 131879078 131879078 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IL5 NM_000879 exon1 c.A93T p.K31N GGTCTCTTTCACC . 142.0 20.0 116.0 0.0 . 7 . . Atlas-SNP C5orf15 56951 hgsc.bcm.edu hg19 5 133292672 133292672 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C5orf15 NM_020199 exon3 c.C676G p.L226V GAACCAGAAGAAA . 230.0 36.0 188.0 0.0 . 20 . . Atlas-SNP TXNDC15 79770 hgsc.bcm.edu hg19 5 134210212 134210212 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TXNDC15 NM_024715 exon1 c.G95T p.G32V TCCGCGGCGTGGA . 80.0 24.0 86.0 0.0 . 37 . . Atlas-SNP PCDHA12 56137 hgsc.bcm.edu hg19 5 140257026 140257026 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCDHA12 NM_018903 exon1 c.C1969T p.P657S GGTGAGCCCGCGC . 194.0 14.0 158.0 0.0 . 196 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140562781 140562781 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCDHB16 NM_020957 exon1 c.A647T p.D216V CGCTGGATGGTGG . 68.0 9.0 68.0 0.0 . 159 . . Atlas-SNP PCDHB12 56124 hgsc.bcm.edu hg19 5 140589743 140589743 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCDHB12 NM_018932 exon1 c.A1264G p.T422A ACCATCACCGTCA . 144.0 28.0 131.0 0.0 . 179 . . Atlas-SNP SYNPO 11346 hgsc.bcm.edu hg19 5 149997966 149997966 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SYNPO NM_001166209 exon2 c.C37G p.P13A CTTGCACCCAGCG . 178.0 30.0 189.0 0.0 . 147 . . Atlas-SNP SYNPO 11346 hgsc.bcm.edu hg19 5 149997969 149997969 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SYNPO NM_001166209 exon2 c.A40T p.S14C GCACCCAGCGAAG . 183.0 30.0 193.0 0.0 . 147 . . Atlas-SNP FAT2 2196 hgsc.bcm.edu hg19 5 150925156 150925156 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAT2 NM_001447 exon9 c.C5532A p.D1844E TCCTTGGTCATGG . 173.0 53.0 189.0 0.0 . 465 . . Atlas-SNP CPEB4 80315 hgsc.bcm.edu hg19 5 173372134 173372134 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CPEB4 NM_030627 exon5 c.A1447G p.I483V CCAGACATTGATG . 136.0 22.0 140.0 0.0 . 54 . . Atlas-SNP TRIM7 81786 hgsc.bcm.edu hg19 5 180626894 180626894 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TRIM7 NM_203293 exon3 c.A806T p.Q269L TGGATCTGGCTGC . 80.0 8.0 73.0 0.0 . 56 . . Atlas-SNP SSR1 6745 hgsc.bcm.edu hg19 6 7301679 7301679 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SSR1 NM_003144 exon4 c.A407C p.N136T GTGAAATTCTGGA . 177.0 23.0 130.0 0.0 . 21 . . Atlas-SNP NKAPL 222698 hgsc.bcm.edu hg19 6 28227649 28227649 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NKAPL NM_001007531 exon1 c.G500T p.S167I GCAGCAGTTCAGA . 142.0 18.0 129.0 0.0 . 72 . . Atlas-SNP OR2J2 26707 hgsc.bcm.edu hg19 6 29141609 29141609 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR2J2 NM_030905 exon1 c.A197C p.N66T TTTCAAACCTCTC . 144.0 22.0 101.0 0.0 . 51 . . Atlas-SNP PPP1R10 5514 hgsc.bcm.edu hg19 6 30570416 30570416 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PPP1R10 NM_002714 exon19 c.A2010T p.P670P AGGGGGTGGAGGA . 46.0 8.0 35.0 0.0 . 60 . . Atlas-SNP COL11A2 1302 hgsc.bcm.edu hg19 6 33144072 33144072 + Silent SNP G G A rs138650682 bycluster TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 COL11A2,NS,carcinoma,0,1 COL11A2 NM_080680 exon28 c.C2178T p.D726D AATTCCGTCCACA . 153.0 17.0 112.0 0.0 . 124 . G|1.000;A|0.000 Atlas-SNP ANKS1A 23294 hgsc.bcm.edu hg19 6 35051203 35051203 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ANKS1A NM_015245 exon20 c.G2917C p.E973Q TCTACGGAGCACA . 128.0 15.0 96.0 0.0 . 123 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43160940 43160940 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CUL9 NM_015089 exon9 c.G2382A p.G794G GGCTGGGCTGGCG . 85.0 33.0 67.0 0.0 . 248 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43182826 43182826 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CUL9 NM_015089 exon30 c.G5698T p.A1900S CTGGAGGCCTGGC . 84.0 4.0 76.0 0.0 . 248 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43182827 43182827 + Missense_Mutation SNP C C T rs146106470 bycluster TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CUL9 NM_015089 exon30 c.C5699T p.A1900V TGGAGGCCTGGCA . 83.0 4.0 78.0 0.0 . 248 . C|1.000;T|0.000 Atlas-SNP SLC22A7 10864 hgsc.bcm.edu hg19 6 43269998 43269998 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC22A7 NM_153320 exon7 c.C1122T p.N374N GCTGAACGTGTAC . 149.0 19.0 106.0 0.0 . 69 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56380255 56380255 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DST NM_015548 exon53 c.A10700G p.E3567G CGATGTTCTTCCT . 69.0 9.0 57.0 0.0 . 1427 . . Atlas-SNP DST 667 hgsc.bcm.edu hg19 6 56380272 56380272 + Silent SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DST NM_015548 exon53 c.A10683C p.L3561L CTGCCTTAGAGTT . 83.0 9.0 72.0 0.0 . 1427 . . Atlas-SNP EYS 346007 hgsc.bcm.edu hg19 6 65300985 65300985 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EYS NM_001142800 exon26 c.T4775A p.I1592K GCTAATATCGCTG . 66.0 14.0 75.0 0.0 . 527 . . Atlas-SNP OOEP 441161 hgsc.bcm.edu hg19 6 74079023 74079023 + Silent SNP G G A rs372105159 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OOEP NM_001080507 exon2 c.C276T p.V92V GATTTCGACTAGG . 133.0 65.0 130.0 0.0 . 18 . . Atlas-SNP COL12A1 1303 hgsc.bcm.edu hg19 6 75875410 75875410 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . COL12A1 NM_004370 exon14 c.T2796C p.V932V ACCGCGAACCATT . 103.0 18.0 145.0 0.0 . 385 . . Atlas-SNP PNISR 25957 hgsc.bcm.edu hg19 6 99851737 99851737 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PNISR NM_015491 exon9 c.A1124T p.Q375L CTGGACTGTGCCA . 178.0 46.0 210.0 0.0 . 74 . . Atlas-SNP PNISR 25957 hgsc.bcm.edu hg19 6 99854007 99854007 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PNISR NM_015491 exon7 c.A902G p.E301G GCAGCCTCAACAT . 79.0 22.0 104.0 0.0 . 74 . . Atlas-SNP MAN1A1 4121 hgsc.bcm.edu hg19 6 119669665 119669665 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MAN1A1 NM_005907 exon2 c.A566T p.D189V GCGGCGTCGGCGG . 89.0 21.0 111.0 0.0 . 77 . . Atlas-SNP ENPP1 5167 hgsc.bcm.edu hg19 6 132189188 132189188 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ENPP1 NM_006208 exon12 c.A1195T p.M399L GATGGTATGGTTG . 80.0 19.0 93.0 0.0 . 108 . . Atlas-SNP EYA4 2070 hgsc.bcm.edu hg19 6 133767789 133767789 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EYA4 NM_172105 exon4 c.A105T p.L35L GGACCTAGCAAGT . 93.0 18.0 137.0 0.0 . 196 . . Atlas-SNP BCLAF1 9774 hgsc.bcm.edu hg19 6 136597258 136597258 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 .,1 BCLAF1 NM_014739 exon5 c.G1405T p.E469X GCCTTTCCACTAC . 107.0 17.0 102.0 0.0 . 203 . . Atlas-SNP MAP7 9053 hgsc.bcm.edu hg19 6 136693743 136693743 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MAP7 NM_001198609 exon8 c.A862G p.M288V AGGGCATGATGAT . 102.0 56.0 138.0 0.0 . 63 . . Atlas-SNP ESR1 2099 hgsc.bcm.edu hg19 6 152415601 152415601 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ESR1 NM_000125 exon7 c.A1451G p.D484G TCACAGACACTTT . 65.0 16.0 101.0 0.0 . 94 . . Atlas-SNP EIF2AK1 27102 hgsc.bcm.edu hg19 7 6080784 6080784 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EIF2AK1 NM_014413 exon9 c.A858T p.P286P TTTTTCTGGGGTG . 144.0 19.0 108.0 0.0 . 76 . . Atlas-SNP INHBA 3624 hgsc.bcm.edu hg19 7 41729994 41729994 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . INHBA NM_002192 exon3 c.C535G p.Q179E GCTTCTGCTGCTG . 93.0 11.0 67.0 0.0 . 118 . . Atlas-SNP INHBA 3624 hgsc.bcm.edu hg19 7 41730010 41730010 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 INHBA,NS,carcinoma,0,1 INHBA NM_002192 exon3 c.C519T p.I173I GAGGCGGATGGTG . 79.0 9.0 56.0 0.0 . 118 . . Atlas-SNP DDC 1644 hgsc.bcm.edu hg19 7 50563117 50563117 + Splice_Site SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 DDC_ENST00000380984,NS,carcinoma,0,2 DDC NM_001242889 exon8 c.598-2A>T . GCAAACTGCCAAA . 111.0 17.0 59.0 0.0 . 100 . . Atlas-SNP ZNF679 168417 hgsc.bcm.edu hg19 7 63726363 63726363 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF679 NM_153363 exon5 c.A352T p.S118C GGAAAAAGTGGAC . 227.0 31.0 142.0 0.0 . 80 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82582621 82582621 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCLO NM_014510 exon5 c.G7648T p.A2550S AATCTGCTGAAGT . 139.0 16.0 132.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82595525 82595525 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCLO NM_014510 exon4 c.A3579T p.Q1193H TTGTTTTTGATCT . 121.0 35.0 89.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82764329 82764329 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PCLO NM_014510 exon3 c.T2537A p.V846D GGGTCAACTTGTT . 191.0 17.0 161.0 0.0 . 1506 . . Atlas-SNP SEMA3A 10371 hgsc.bcm.edu hg19 7 83610729 83610729 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SEMA3A NM_006080 exon14 c.C1560T p.Y520Y TTTCCCGTAAATA . 213.0 10.0 172.0 0.0 . 121 . . Atlas-SNP SAMD9 54809 hgsc.bcm.edu hg19 7 92731091 92731091 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SAMD9 NM_001193307 exon2 c.G4320C p.W1440C TTCTGGCCAGAAT . 171.0 33.0 142.0 0.0 . 239 . . Atlas-SNP DLX5 1749 hgsc.bcm.edu hg19 7 96650106 96650106 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DLX5 NM_005221 exon3 c.T812A p.L271Q GGCGGCAGGTGGG . 117.0 12.0 115.0 0.0 . 52 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100680019 100680019 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MUC17 NM_001040105 exon3 c.T5322C p.I1774I TCCTATTGACACC . 103.0 23.0 86.0 0.0 . 804 . . Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100680551 100680551 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MUC17 NM_001040105 exon3 c.G5854A p.D1952N CTTGCTGACACCA . 94.0 24.0 81.0 0.0 . 804 . . Atlas-SNP PMPCB 9512 hgsc.bcm.edu hg19 7 102944347 102944347 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PMPCB NM_004279 exon5 c.A516T p.E172D GATTGAACGTGAG . 165.0 17.0 127.0 0.0 . 35 . . Atlas-SNP SYPL1 6856 hgsc.bcm.edu hg19 7 105752947 105752947 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SYPL1 NM_006754 exon1 c.A29T p.Q10L ATCCGCTGGCGAA . 94.0 21.0 65.0 0.0 . 20 . . Atlas-SNP ST7 7982 hgsc.bcm.edu hg19 7 116862960 116862960 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ST7 NM_021908 exon16 c.A1684T p.K562X AATTGCAAGAGTA . 91.0 11.0 92.0 0.0 . 64 . . Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117361141 117361141 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CTTNBP2 NM_033427 exon20 c.T4491C p.N1497N AGAAGCATTCCTG . 91.0 30.0 78.0 0.0 . 200 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128486380 128486380 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FLNC NM_001127487 exon23 c.T3990A p.Y1330X CCTGTATGATGAG . 82.0 12.0 78.0 0.0 . 339 . . Atlas-SNP FLNC 2318 hgsc.bcm.edu hg19 7 128497184 128497184 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FLNC NM_001458 exon46 c.A7574T p.E2525V CATCAGAGTTCAT . 72.0 9.0 57.0 0.0 . 339 . . Atlas-SNP KIAA1549 57670 hgsc.bcm.edu hg19 7 138566238 138566238 + Silent SNP C C T rs377023001 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 KIAA1549_ENST00000422774,rectum,carcinoma,0,2 KIAA1549 NM_020910 exon11 c.G4125A p.A1375A CAGTGGCGCTGGC . 143.0 35.0 135.0 0.0 . 314 . . Atlas-SNP WEE2 494551 hgsc.bcm.edu hg19 7 141424074 141424074 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . WEE2 NM_001105558 exon8 c.A1220T p.E407V TGCAAGAGGTATA . 248.0 49.0 194.0 0.0 . 59 . . Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141736006 141736006 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MGAM NM_004668 exon17 c.C1997A p.P666H ACACCCCTGAGGA . 187.0 56.0 133.0 0.0 . 767 . . Atlas-SNP GIMAP6 474344 hgsc.bcm.edu hg19 7 150325135 150325135 + Missense_Mutation SNP G G T rs368001704 alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GIMAP6 NM_001244072 exon3 c.C761A p.A254D GCAAGGGCCTGGT . 95.0 14.0 72.0 0.0 . 60 . . Atlas-SNP GIMAP2 26157 hgsc.bcm.edu hg19 7 150389814 150389814 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GIMAP2 NM_015660 exon3 c.A440T p.H147L TTACCCACAAGGA . 163.0 42.0 120.0 0.0 . 39 . . Atlas-SNP GBX1 2636 hgsc.bcm.edu hg19 7 150864157 150864157 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GBX1 NM_001098834 exon1 c.T479C p.V160A TCTGCCACTTTCT . 183.0 22.0 156.0 0.0 . 21 . . Atlas-SNP DNAJB6 10049 hgsc.bcm.edu hg19 7 157160104 157160104 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DNAJB6 NM_058246 exon5 c.C273T p.F91F TGGCTTCACATTC . 139.0 30.0 86.0 0.0 . 39 . . Atlas-SNP ADAMDEC1 27299 hgsc.bcm.edu hg19 8 24259501 24259501 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ADAMDEC1 NM_014479 exon12 c.A1216G p.K406E AAACCAAAGTGCC . 79.0 10.0 78.0 0.0 . 69 . . Atlas-SNP KCNU1 157855 hgsc.bcm.edu hg19 8 36642022 36642022 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KCNU1 NM_001031836 exon1 c.T94C p.F32L TCTTCCTTTGTGA . 145.0 28.0 92.0 0.0 . 359 . . Atlas-SNP LSM1 27257 hgsc.bcm.edu hg19 8 38029501 38029501 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LSM1 NM_014462 exon2 c.A97G p.R33G TGCTTCTTAAAAA . 141.0 17.0 89.0 0.0 . 14 . . Atlas-SNP CNBD1 168975 hgsc.bcm.edu hg19 8 88365869 88365869 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CNBD1 NM_173538 exon10 c.A1158G p.R386R GAAAAGATCTCAA . 552.0 31.0 352.0 0.0 . 206 . . Atlas-SNP MATN2 4147 hgsc.bcm.edu hg19 8 99033508 99033508 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MATN2 NM_002380 exon13 c.A1895C p.K632T TCTGCAAATGCTC . 184.0 21.0 116.0 0.0 . 165 . . Atlas-SNP SPAG1 6674 hgsc.bcm.edu hg19 8 101178179 101178179 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SPAG1 NM_003114 exon3 c.A278G p.E93G AATGGGAAAAAAT . 261.0 33.0 164.0 0.0 . 80 . . Atlas-SNP PABPC1 26986 hgsc.bcm.edu hg19 8 101733713 101733713 + Silent SNP C C G rs148248545 alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PABPC1 NM_002568 exon1 c.G99C p.P33P CCCGGCCGGGCTG . 387.0 162.0 233.0 0.0 . 76 . C|1.000;T|0.000 Atlas-SNP EXT1 2131 hgsc.bcm.edu hg19 8 118834756 118834756 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EXT1 NM_000127 exon5 c.A1365T p.L455L CTGTGGTAGTACG . 116.0 9.0 85.0 0.0 . 98 . . Atlas-SNP ADCY8 114 hgsc.bcm.edu hg19 8 131916177 131916177 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 ADCY8,colon,carcinoma,0,2 ADCY8 NM_001115 exon7 c.T1752C p.T584T TAAGTAAGTTTCG . 184.0 39.0 103.0 0.0 . 291 . . Atlas-SNP TG 7038 hgsc.bcm.edu hg19 8 133894143 133894143 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TG NM_003235 exon6 c.A674C p.Q225P CCTTCCAGAGGAG . 128.0 14.0 87.0 0.0 . 416 . . Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139727943 139727943 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . COL22A1 NM_152888 exon30 c.A2499G p.K833K GTCACCTTTCAGT . 126.0 8.0 64.0 0.0 . 390 . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142160957 142160957 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DENND3 NM_014957 exon6 c.A520G p.I174V CTCCAGATTGTGT . 130.0 53.0 74.0 0.0 . 127 . . Atlas-SNP COMMD5 28991 hgsc.bcm.edu hg19 8 146076399 146076399 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . COMMD5 NM_001081004 exon2 c.T325G p.F109V CCCTGAAGGTGTC . 166.0 34.0 76.0 0.0 . 18 . . Atlas-SNP JAK2 3717 hgsc.bcm.edu hg19 9 5069060 5069060 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . JAK2 NM_004972 exon11 c.A1365G p.T455T GATTACAAAAAAT . 169.0 30.0 169.0 0.0 . 35466 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8404601 8404601 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PTPRD NM_002839 exon36 c.A4146T p.P1382P ATTCTTTGGTTTG . 81.0 18.0 114.0 0.0 . 1348 . . Atlas-SNP IFNA16 3449 hgsc.bcm.edu hg19 9 21217203 21217203 + Silent SNP A A G rs372911133 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IFNA16 NM_002173 exon1 c.T102C p.N34N CCTCCTATTACCC . 195.0 40.0 209.0 0.0 . 27 . . Atlas-SNP KIF24 347240 hgsc.bcm.edu hg19 9 34311028 34311028 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KIF24 NM_194313 exon2 c.A317T p.N106I TCTTTATTGTCAG . 121.0 23.0 123.0 0.0 . 64 . . Atlas-SNP KIAA1045 23349 hgsc.bcm.edu hg19 9 34977626 34977626 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KIAA1045 NM_015297 exon7 c.A1094T p.E365V CCACAGAGCAGGA . 177.0 33.0 166.0 0.0 . 60 . . Atlas-SNP C9orf131 138724 hgsc.bcm.edu hg19 9 35043491 35043491 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C9orf131 NM_203299 exon2 c.A865T p.R289W CATCTGAGGCCCT . 98.0 22.0 91.0 0.0 . 71 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79320733 79320733 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PRUNE2 NM_015225 exon8 c.T6457C p.F2153L GGACAAACTCCCG . 42.0 11.0 67.0 0.0 . 331 . . Atlas-SNP WNK2 65268 hgsc.bcm.edu hg19 9 95992093 95992093 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . WNK2 NM_006648 exon2 c.A797T p.K266M GCGCCAAGGGCAA . 64.0 11.0 64.0 0.0 . 277 . . Atlas-SNP OR13C5 138799 hgsc.bcm.edu hg19 9 107360745 107360745 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR13C5 NM_001004482 exon1 c.A950T p.N317I TACTTGTTAAAAT . 61.0 12.0 58.0 0.0 . 60 . . Atlas-SNP C5 727 hgsc.bcm.edu hg19 9 123789473 123789473 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C5 NM_001735 exon8 c.A838T p.K280X TTTCTTTTTGATC . 39.0 6.0 42.0 0.0 . 124 . . Atlas-SNP OR1N2 138882 hgsc.bcm.edu hg19 9 125316382 125316382 + Silent SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR1N2 NM_001004457 exon1 c.A934C p.R312R AGGAACAGAGACA . 59.0 5.0 61.0 0.0 . 51 . . Atlas-SNP NR5A1 2516 hgsc.bcm.edu hg19 9 127262932 127262932 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NR5A1 NM_004959 exon4 c.C307T p.R103W GGGCCCGGTCCCG . 74.0 14.0 70.0 0.0 . 32 . . Atlas-SNP NUP214 8021 hgsc.bcm.edu hg19 9 134026017 134026017 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 NUP214,bladder,carcinoma,0,1 NUP214 NM_005085 exon16 c.G2142T p.Q714H CTTTCAGAAGGAG . 137.0 18.0 126.0 0.0 . 166 . . Atlas-SNP WDR5 11091 hgsc.bcm.edu hg19 9 137023062 137023062 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . WDR5 NM_052821 exon13 c.T952C p.S318P ATCGCCTCTGCTG . 89.0 18.0 101.0 0.0 . 29 . . Atlas-SNP INPP5E 56623 hgsc.bcm.edu hg19 9 139324161 139324161 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . INPP5E NM_019892 exon10 c.G1901C p.S634T TTCTGACTCTGTA . 69.0 7.0 76.0 0.0 . 18 . . Atlas-SNP NEBL 10529 hgsc.bcm.edu hg19 10 21169807 21169807 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NEBL NM_006393 exon5 c.T396A p.A132A TTTGGCAGCATCA . 70.0 11.0 78.0 0.0 . 199 . . Atlas-SNP FAM13C 220965 hgsc.bcm.edu hg19 10 61043201 61043201 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM13C NM_198215 exon6 c.G514A p.A172T GAGCAGCTTCTTC . 65.0 9.0 50.0 0.0 . 124 . . Atlas-SNP FAM13C 220965 hgsc.bcm.edu hg19 10 61112104 61112104 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM13C NM_198215 exon3 c.A250G p.M84V TGCCCATGCTGGG . 69.0 20.0 57.0 0.0 . 124 . . Atlas-SNP PTEN 5728 hgsc.bcm.edu hg19 10 89720791 89720791 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 PTEN,NS,other,+2,2 PTEN NM_000314 exon8 c.A942G p.E314E CAAGGAATATCTA . 313.0 50.0 389.0 0.0 . 3652 . . Atlas-SNP IFIT2 3433 hgsc.bcm.edu hg19 10 91066479 91066479 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IFIT2 NM_001547 exon2 c.T766A p.F256I GCCAAGTTTTATC . 187.0 20.0 118.0 0.0 . 39 . . Atlas-SNP SFRP5 6425 hgsc.bcm.edu hg19 10 99527306 99527306 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SFRP5 NM_003015 exon3 c.T919A p.Y307N AAGGGTAGTAGAG . 99.0 27.0 104.0 0.0 . 32 . . Atlas-SNP SORCS3 22986 hgsc.bcm.edu hg19 10 106865232 106865232 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SORCS3 NM_014978 exon7 c.A1171C p.I391L ATTGACATCAGTT . 75.0 16.0 94.0 0.0 . 282 . . Atlas-SNP FAM160B1 57700 hgsc.bcm.edu hg19 10 116608453 116608453 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM160B1 NM_020940 exon13 c.A1760G p.E587G ATGTTGAGGGCAC . 92.0 15.0 64.0 0.0 . 107 . . Atlas-SNP C10orf90 118611 hgsc.bcm.edu hg19 10 128150126 128150126 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C10orf90 NM_001004298 exon5 c.A1563T p.V521V TATTTTTACAACC . 80.0 7.0 103.0 0.0 . 121 . . Atlas-SNP C10orf90 118611 hgsc.bcm.edu hg19 10 128193605 128193605 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C10orf90 NM_001004298 exon3 c.C164T p.S55F ATCTGGGAGATGA . 71.0 17.0 59.0 0.0 . 121 . . Atlas-SNP CD151 977 hgsc.bcm.edu hg19 11 836089 836089 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CD151 NM_139030 exon2 c.A20G p.K7R ACGAGAAGAAGAC . 99.0 16.0 97.0 0.0 . 7 . . Atlas-SNP MUC6 4588 hgsc.bcm.edu hg19 11 1030299 1030299 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MUC6 NM_005961 exon8 c.A929T p.E310V CCGCACTCCTGGT . 121.0 20.0 136.0 0.0 . 408 . . Atlas-SNP TSSC4 10078 hgsc.bcm.edu hg19 11 2424234 2424234 + Missense_Mutation SNP G G T rs1008265 bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TSSC4 NM_005706 exon2 c.G371T p.R124L TCAAGCGGCCCCT . 135.0 22.0 156.0 0.0 . 19 . G|0.988;A|0.012 Atlas-SNP OR56B1 387748 hgsc.bcm.edu hg19 11 5757966 5757966 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR56B1 NM_001005180 exon1 c.A220T p.I74F CTTGGCATCCTCT . 98.0 19.0 117.0 0.0 . 38 . . Atlas-SNP USP47 55031 hgsc.bcm.edu hg19 11 11944273 11944273 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . USP47 NM_017944 exon10 c.A1017G p.K339K TAAGAAATCTCCT . 109.0 18.0 126.0 0.0 . 91 . . Atlas-SNP LUZP2 338645 hgsc.bcm.edu hg19 11 24936037 24936037 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LUZP2 NM_001009909 exon7 c.G475T p.A159S ATCCAAGCCCAGC . 322.0 39.0 286.0 0.0 . 90 . . Atlas-SNP LUZP2 338645 hgsc.bcm.edu hg19 11 24936045 24936045 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LUZP2 NM_001009909 exon7 c.G483A p.L161L CCAGCTGAAGGAG . 325.0 41.0 280.0 0.0 . 90 . . Atlas-SNP WT1 7490 hgsc.bcm.edu hg19 11 32413561 32413561 + Silent SNP G G T rs374799820 alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . WT1 NM_024424 exon9 c.C1389A p.S463S GTGGTCGGACCGG . 129.0 24.0 109.0 0.0 . 744 . . Atlas-SNP PTPRJ 5795 hgsc.bcm.edu hg19 11 48188835 48188835 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PTPRJ NM_002843 exon25 c.A3935G p.Q1312R TCTACCAGAACAC . 96.0 19.0 116.0 0.0 . 225 . . Atlas-SNP TRIM49B 283116 hgsc.bcm.edu hg19 11 49059297 49059297 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TRIM49B NM_001206626 exon6 c.G1127T p.G376V AGGATGGACTCTT . 119.0 36.0 125.0 0.0 . 27 . . Atlas-SNP OR5B21 219968 hgsc.bcm.edu hg19 11 58275100 58275100 + Missense_Mutation SNP C C T rs376076638 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR5B21 NM_001005218 exon1 c.G479A p.G160D AAGGTGCCTGCTG . 102.0 6.0 88.0 0.0 . 59 . . Atlas-SNP PLAC1L 219990 hgsc.bcm.edu hg19 11 59814496 59814496 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PLAC1L NM_173801 exon4 c.A427G p.T143A TTTCAGACAACAG . 123.0 47.0 113.0 0.0 . 36 . . Atlas-SNP MS4A12 54860 hgsc.bcm.edu hg19 11 60264908 60264908 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MS4A12 NM_017716 exon2 c.A117T p.L39F CAACTTAGAAAAC . 166.0 12.0 188.0 0.0 . 44 . . Atlas-SNP STX5 6811 hgsc.bcm.edu hg19 11 62594819 62594819 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . STX5 NM_003164 exon4 c.A348G p.T116T ACAGATTGTCAGC . 111.0 12.0 102.0 0.0 . 42 . . Atlas-SNP SLC3A2 6520 hgsc.bcm.edu hg19 11 62648792 62648792 + Silent SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC3A2 NM_001012662 exon4 c.C603A p.A201A TGGTGCCGTGGTC . 71.0 17.0 79.0 0.0 . 55 . . Atlas-SNP NPAS4 266743 hgsc.bcm.edu hg19 11 66189687 66189687 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NPAS4 NM_178864 exon2 c.A272G p.E91G CAGCCGAGGGGAA . 60.0 10.0 72.0 0.0 . 133 . . Atlas-SNP B3GNT6 192134 hgsc.bcm.edu hg19 11 76751320 76751320 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . B3GNT6 NM_138706 exon2 c.G725A p.G242D CACCCGGCCGCCA . 29.0 10.0 33.0 0.0 . 27 . . Atlas-SNP GRM5 2915 hgsc.bcm.edu hg19 11 88780420 88780420 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GRM5 NM_000842 exon2 c.G621T p.K207N GTACCTCTTCACT . 113.0 15.0 120.0 0.0 . 414 . . Atlas-SNP ARHGAP20 57569 hgsc.bcm.edu hg19 11 110451149 110451149 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ARHGAP20 NM_020809 exon16 c.A2521G p.T841A GATGTGTCCTTGG . 102.0 26.0 126.0 0.0 . 150 . . Atlas-SNP MLL 4297 hgsc.bcm.edu hg19 11 118359362 118359362 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MLL NM_001197104 exon11 c.C4366T p.H1456Y CCCTTCCACAAGT . 83.0 18.0 124.0 0.0 . 548 . . Atlas-SNP NTM 50863 hgsc.bcm.edu hg19 11 132081914 132081914 + Splice_Site SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 NTM_ENST00000374791,NS,carcinoma,0,2 NTM NM_001048209 exon4 c.401-2A>T . TTCCACAGTATCT . 70.0 22.0 82.0 0.0 . 253 . . Atlas-SNP B4GALNT3 283358 hgsc.bcm.edu hg19 12 667798 667798 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . B4GALNT3 NM_173593 exon18 c.A2732T p.H911L GGCTGCATTGTGG . 132.0 31.0 87.0 0.0 . 64 . . Atlas-SNP EPS8 2059 hgsc.bcm.edu hg19 12 15777209 15777209 + Missense_Mutation SNP G G T rs150904526 bycluster;byfrequency;alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EPS8 NM_004447 exon19 c.C2177A p.T726K TCTGGTGTGGAGT . 210.0 66.0 147.0 0.0 . 70 . G|0.999;A|0.001 Atlas-SNP PIK3C2G 5288 hgsc.bcm.edu hg19 12 18435472 18435472 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PIK3C2G NM_004570 exon2 c.A457G p.K153E TTGGATAAAATTA . 101.0 15.0 69.0 0.0 . 315 . . Atlas-SNP GYS2 2998 hgsc.bcm.edu hg19 12 21695505 21695505 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GYS2 NM_021957 exon13 c.A1570G p.I524V TGGGGATACCCAT . 313.0 58.0 282.0 0.0 . 110 . . Atlas-SNP PPHLN1 51535 hgsc.bcm.edu hg19 12 42835193 42835193 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PPHLN1 NM_201515 exon11 c.C1007G p.S336C AAAAGTCTATACA . 110.0 11.0 76.0 0.0 . 101 . . Atlas-SNP KRT76 51350 hgsc.bcm.edu hg19 12 53163335 53163335 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KRT76 NM_015848 exon8 c.T1517C p.I506T TTACAAATGCACA . 95.0 13.0 66.0 0.0 . 72 . . Atlas-SNP KRT18 3875 hgsc.bcm.edu hg19 12 53343284 53343284 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KRT18 NM_000224 exon1 c.G327A p.E109E GCTGGAGAGCAAA . 106.0 14.0 81.0 0.0 . 31 . . Atlas-SNP CAND1 55832 hgsc.bcm.edu hg19 12 67692842 67692842 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CAND1 NM_018448 exon7 c.A967G p.M323V AATGCAATGGATG . 50.0 11.0 36.0 0.0 . 100 . . Atlas-SNP ZFC3H1 196441 hgsc.bcm.edu hg19 12 72037930 72037930 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZFC3H1 NM_144982 exon5 c.A1448G p.E483G TACTGTTCTTCCT . 121.0 15.0 122.0 0.0 . 172 . . Atlas-SNP E2F7 144455 hgsc.bcm.edu hg19 12 77426865 77426865 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . E2F7 NM_203394 exon9 c.A1347T p.A449A GACAGCTGCCAGG . 77.0 14.0 73.0 0.0 . 201 . . Atlas-SNP ACSS3 79611 hgsc.bcm.edu hg19 12 81647343 81647343 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ACSS3 NM_024560 exon15 c.T1889A p.V630E GCCCTGTGGCTGC . 191.0 33.0 188.0 0.0 . 118 . . Atlas-SNP TMTC2 160335 hgsc.bcm.edu hg19 12 83251361 83251361 + Splice_Site SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMTC2 NM_152588 exon2 c.654+2T>A . ACAAAGTAAGTGA . 94.0 14.0 82.0 0.0 . 100 . . Atlas-SNP TMTC3 160418 hgsc.bcm.edu hg19 12 88542128 88542128 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMTC3 NM_181783 exon2 c.A36T p.I12I CTTAATAGTAGGT . 212.0 41.0 145.0 0.0 . 75 . . Atlas-SNP ATP2B1 490 hgsc.bcm.edu hg19 12 90020267 90020267 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ATP2B1 NM_001001323 exon7 c.A1093T p.K365X TAAGTTTCCCTTG . 65.0 9.0 64.0 0.0 . 191 . . Atlas-SNP ANKS1B 56899 hgsc.bcm.edu hg19 12 99898358 99898358 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ANKS1B NM_152788 exon10 c.C1334A p.T445K GGAAATGTATCCA . 118.0 16.0 64.0 0.0 . 180 . . Atlas-SNP RFX4 5992 hgsc.bcm.edu hg19 12 107075779 107075779 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RFX4 NM_001206691 exon5 c.G351T p.R117S CATAAGGCAGCAG . 99.0 15.0 89.0 0.0 . 218 . . Atlas-SNP TBX5 6910 hgsc.bcm.edu hg19 12 114793650 114793650 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TBX5 NM_000192 exon9 c.T1244C p.V415A GGCTGCACGGTGG . 73.0 15.0 60.0 0.0 . 188 . . Atlas-SNP PITPNM2 57605 hgsc.bcm.edu hg19 12 123472882 123472882 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PITPNM2 NM_020845 exon19 c.A2896T p.N966Y TGGAGTTGTCATG . 55.0 13.0 42.0 0.0 . 105 . . Atlas-SNP DNAH10 196385 hgsc.bcm.edu hg19 12 124335527 124335527 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DNAH10 NM_207437 exon34 c.G5841A p.S1947S CGAGTCGGTGAAG . 108.0 19.0 101.0 0.0 . 888 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 126139052 126139052 + Silent SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMEM132B NM_052907 exon9 c.T3033C p.N1011N TAAAAATGAACCT . 90.0 13.0 88.0 0.0 . 207 . . Atlas-SNP TMEM132D 121256 hgsc.bcm.edu hg19 12 129558522 129558522 + Silent SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 TMEM132D,colon,carcinoma,0,1 TMEM132D NM_133448 exon9 c.G3198C p.V1066V ACTCATCACGATG . 159.0 51.0 128.0 1.0 . 299 . . Atlas-SNP AMER2 219287 hgsc.bcm.edu hg19 13 25745258 25745258 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . NM_152704 exon1 c.T500C p.L167P TTCTTCAGCAGCG . 73.0 9.0 83.0 0.0 . . . . Atlas-SNP ALG5 29880 hgsc.bcm.edu hg19 13 37563694 37563694 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALG5 NM_013338 exon5 c.A374G p.Q125R TATTTCTGGCAAT . 79.0 15.0 89.0 0.0 . 28 . . Atlas-SNP OR4K15 81127 hgsc.bcm.edu hg19 14 20443792 20443792 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . OR4K15 NM_001005486 exon1 c.C115A p.L39M GTGTTGCTGGGAC . 52.0 9.0 49.0 0.0 . 82 . . Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23885305 23885305 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MYH7 NM_000257 exon34 c.G4861T p.D1621Y TGAGGTCTCCTTC . 76.0 10.0 85.0 0.0 . 349 . . Atlas-SNP FAM179B 23116 hgsc.bcm.edu hg19 14 45473485 45473485 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM179B NM_015091 exon4 c.A2560T p.K854X CCTCTTAAAAGCT . 134.0 24.0 132.0 0.0 . 115 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52486849 52486849 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NID2 NM_007361 exon13 c.T2722A p.Y908N TATTGTAGCAGGT . 123.0 23.0 106.0 0.0 . 201 . . Atlas-SNP C14orf39 317761 hgsc.bcm.edu hg19 14 60923752 60923752 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C14orf39 NM_174978 exon15 c.G1241C p.R414T TCAGCTCTCTCTT . 182.0 30.0 192.0 0.0 . 79 . . Atlas-SNP RHOJ 57381 hgsc.bcm.edu hg19 14 63757723 63757723 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RHOJ NM_020663 exon5 c.G626A p.S209N GTCACAGCTGCTG . 84.0 19.0 70.0 0.0 . 45 . . Atlas-SNP GPHN 10243 hgsc.bcm.edu hg19 14 67589018 67589018 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GPHN NM_020806 exon17 c.A1672T p.S558C CGAGACAGCAATC . 170.0 33.0 142.0 0.0 . 79 . . Atlas-SNP ZFYVE26 23503 hgsc.bcm.edu hg19 14 68264872 68264872 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZFYVE26 NM_015346 exon11 c.A2107T p.S703C GAGGGCTGCGGCT . 68.0 9.0 65.0 0.0 . 223 . . Atlas-SNP LTBP2 4053 hgsc.bcm.edu hg19 14 75018988 75018988 + Missense_Mutation SNP G G A rs371940681 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LTBP2 NM_000428 exon6 c.C1301T p.P434L CTGTCCGGCTGCG . 102.0 25.0 146.0 0.0 . 158 . . Atlas-SNP KCNK13 56659 hgsc.bcm.edu hg19 14 90650745 90650745 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KCNK13 NM_022054 exon2 c.T625C p.S209P CTCATCTCTTGCT . 78.0 22.0 109.0 0.0 . 76 . . Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95577654 95577654 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DICER1 NM_030621 exon15 c.A2256T p.A752A ACTAACTGCTTTT . 72.0 9.0 103.0 0.0 . 181 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105414392 105414392 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . AHNAK2 NM_138420 exon7 c.G7396A p.E2466K CCCCCTCCAGCCA . 98.0 21.0 137.0 0.0 . 719 . . Atlas-SNP ATP10A 57194 hgsc.bcm.edu hg19 15 25971123 25971123 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ATP10A NM_024490 exon5 c.T954C p.V318V CATGCAAACAAGG . 44.0 13.0 55.0 0.0 . 270 . . Atlas-SNP RYR3 6263 hgsc.bcm.edu hg19 15 34072456 34072456 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RYR3 NM_001243996 exon65 c.C9182T p.A3061V CAGCTGCCATACC . 99.0 14.0 129.0 0.0 . 760 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35253000 35253000 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . AQR NM_014691 exon3 c.T148C p.Y50H TTTCATATATATC . 195.0 39.0 164.0 0.0 . 139 . . Atlas-SNP SEMA6D 80031 hgsc.bcm.edu hg19 15 48062884 48062884 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SEMA6D NM_153618 exon19 c.A2124G p.T708T ATGCACAGACTCC . 95.0 30.0 114.0 0.0 . 322 . . Atlas-SNP LEO1 123169 hgsc.bcm.edu hg19 15 52244087 52244087 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LEO1 NM_138792 exon9 c.C1565T p.P522L GCCATTGGCAAGA . 62.0 10.0 62.0 0.0 . 46 . . Atlas-SNP RNF111 54778 hgsc.bcm.edu hg19 15 59350608 59350608 + Missense_Mutation SNP G G C rs201513331 by1000genomes;alternate_allele TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RNF111 NM_017610 exon5 c.G1225C p.A409P ACTAGCGCTTCCA . 78.0 8.0 80.0 0.0 . 179 . G|1.000;A|0.000 Atlas-SNP C15orf60 283677 hgsc.bcm.edu hg19 15 73843382 73843382 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . C15orf60 NM_001042367 exon4 c.T437C p.V146A TAACCGTGCAGGT . 180.0 42.0 193.0 0.0 . 26 . . Atlas-SNP CLK3 1198 hgsc.bcm.edu hg19 15 74914530 74914530 + Silent SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 CLK3_ENST00000454830,colon,carcinoma,0,2 CLK3 NM_001130028 exon4 c.C883A p.R295R GTGTGCCGGATCG . 113.0 39.0 108.0 0.0 . 78 . . Atlas-SNP IREB2 3658 hgsc.bcm.edu hg19 15 78765662 78765662 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IREB2 NM_004136 exon8 c.A962T p.E321V GATGTGAGTTAAC . 138.0 24.0 141.0 0.0 . 106 . . Atlas-SNP UNC45A 55898 hgsc.bcm.edu hg19 15 91483701 91483701 + Missense_Mutation SNP C C T rs144625807 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . UNC45A NM_018671 exon6 c.C685T p.R229W CAGTCACGGGTAG . 84.0 4.0 71.0 0.0 . 57 . C|1.000;T|0.000 Atlas-SNP ALDH1A3 220 hgsc.bcm.edu hg19 15 101420114 101420114 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALDH1A3 NM_000693 exon1 c.T2C p.M1T GAGCCATGGCCAC . 97.0 19.0 90.0 0.0 . 61 . . Atlas-SNP RHBDF1 64285 hgsc.bcm.edu hg19 16 111826 111826 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RHBDF1 NM_022450 exon8 c.A1178T p.K393M TGGCGCTTGACGA . 68.0 7.0 48.0 0.0 . 54 . . Atlas-SNP CACNA1H 8912 hgsc.bcm.edu hg19 16 1261288 1261288 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CACNA1H NM_021098 exon22 c.T4344A p.G1448G TTTGGGTGTGCAG . 92.0 12.0 83.0 0.0 . 317 . . Atlas-SNP CLCN7 1186 hgsc.bcm.edu hg19 16 1496643 1496643 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CLCN7 NM_001287 exon25 c.G2407A p.A803T TCTGGGCCAGCGA . 156.0 23.0 167.0 0.0 . 53 . . Atlas-SNP ABCA3 21 hgsc.bcm.edu hg19 16 2348419 2348419 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ABCA3 NM_001089 exon15 c.A1864G p.T622A CGACTGTCAAGTT . 185.0 25.0 146.0 0.0 . 176 . . Atlas-SNP ADCY9 115 hgsc.bcm.edu hg19 16 4015970 4015970 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ADCY9 NM_001116 exon11 c.A3868G p.K1290E ATGTCTTGTCCAC . 121.0 21.0 86.0 0.0 . 151 . . Atlas-SNP CORO7 79585 hgsc.bcm.edu hg19 16 4405166 4405166 + Splice_Site SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CORO7 NM_001201473 exon27 c.2518-2A>T . TAGTCCTGGGGCG . 159.0 23.0 152.0 0.0 . 73 . . Atlas-SNP CIITA 4261 hgsc.bcm.edu hg19 16 11001808 11001808 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CIITA NM_000246 exon11 c.G2459T p.G820V AGGCTGGAATTTG . 86.0 12.0 85.0 0.0 . 92 . . Atlas-SNP RSL1D1 26156 hgsc.bcm.edu hg19 16 11933580 11933580 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RSL1D1 NM_015659 exon8 c.A1118G p.K373R GTCTTCTTTCCTA . 85.0 10.0 79.0 0.0 . 40 . . Atlas-SNP USP31 57478 hgsc.bcm.edu hg19 16 23083412 23083412 + Silent SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . USP31 NM_020718 exon15 c.G2442T p.S814S AGAGAGCGACGCC . 64.0 21.0 56.0 0.0 . 122 . . Atlas-SNP LAT 27040 hgsc.bcm.edu hg19 16 28996206 28996206 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LAT NM_001014989 exon1 c.G24T p.W8C CAGCTGGCAGGTG . 138.0 19.0 124.0 0.0 . 22 . . Atlas-SNP ITGAX 3687 hgsc.bcm.edu hg19 16 31374277 31374277 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ITGAX NM_000887 exon13 c.T1381A p.S461T GGGGCCTCCCTCT . 184.0 38.0 174.0 0.0 . 198 . . Atlas-SNP CES2 8824 hgsc.bcm.edu hg19 16 66969499 66969499 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CES2 NM_003869 exon1 c.G153T p.Q51H ACAGCAGCGTGTC . 55.0 15.0 95.0 0.0 . 43 . . Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72830306 72830306 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZFHX3 NM_006885 exon9 c.T6275C p.M2092T AGCTCCATCGGCA . 36.0 11.0 48.0 0.0 . 404 . . Atlas-SNP FAM57A 79850 hgsc.bcm.edu hg19 17 644672 644672 + Silent SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FAM57A NM_024792 exon5 c.C636G p.L212L CCTGCTCCAAGTA . 79.0 8.0 76.0 0.0 . 17 . . Atlas-SNP ALOX15B 247 hgsc.bcm.edu hg19 17 7946179 7946179 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALOX15B NM_001141 exon5 c.A653T p.N218I TCTTCAACTTCCG . 108.0 21.0 102.0 0.0 . 66 . . Atlas-SNP NTN1 9423 hgsc.bcm.edu hg19 17 8926031 8926031 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . NTN1 NM_004822 exon2 c.C341T p.P114L ACAACCCGCACAA . 117.0 15.0 104.0 0.0 . 31 . . Atlas-SNP MYH4 4622 hgsc.bcm.edu hg19 17 10350413 10350413 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MYH4 NM_017533 exon35 c.C5086G p.L1696V GTTCCAGGGATGC . 90.0 4.0 70.0 0.0 . 349 . . Atlas-SNP MPRIP 23164 hgsc.bcm.edu hg19 17 17075128 17075128 + Nonsense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MPRIP NM_015134 exon16 c.C2260T p.R754X AAACTTCGAGAAG . 286.0 54.0 266.0 0.0 . 87 . . Atlas-SNP AKAP10 11216 hgsc.bcm.edu hg19 17 19844215 19844215 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . AKAP10 NM_007202 exon7 c.C1170T p.L390L ATAAAAGAGGGCT . 370.0 33.0 298.0 0.0 . 47 . . Atlas-SNP EFCAB5 374786 hgsc.bcm.edu hg19 17 28296107 28296107 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EFCAB5 NM_198529 exon4 c.T489A p.T163T TAATACTGACAGC . 253.0 32.0 221.0 0.0 . 122 . . Atlas-SNP LHX1 3975 hgsc.bcm.edu hg19 17 35297689 35297689 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . LHX1 NM_005568 exon2 c.C273T p.C91C CACCTGCATGATG . 113.0 17.0 89.0 0.0 . 48 . . Atlas-SNP ACACA 31 hgsc.bcm.edu hg19 17 35614734 35614734 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ACACA NM_198834 exon14 c.A1717G p.N573D AAACATTCTTATT . 80.0 9.0 90.0 0.0 . 395 . . Atlas-SNP C17orf96 100170841 hgsc.bcm.edu hg19 17 36829800 36829800 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . NM_001130677 exon1 c.A949G p.N317D AGCAGTTGAGGAG . 38.0 14.0 30.0 0.0 . . . . Atlas-SNP KRTAP17-1 83902 hgsc.bcm.edu hg19 17 39471826 39471826 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KRTAP17-1 NM_031964 exon1 c.C77T p.P26L CAGCCCGGCTGAC . 86.0 10.0 80.0 0.0 . 14 . . Atlas-SNP SGCA 6442 hgsc.bcm.edu hg19 17 48245087 48245087 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SGCA NM_001135697 exon3 c.A302T p.Q101L GGCTCCAGGTCAT . 90.0 18.0 94.0 0.0 . 35 . . Atlas-SNP MBTD1 54799 hgsc.bcm.edu hg19 17 49302381 49302381 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MBTD1 NM_017643 exon3 c.A142G p.K48E CAGATTTACCATC . 91.0 15.0 72.0 0.0 . 44 . . Atlas-SNP DGKE 8526 hgsc.bcm.edu hg19 17 54939189 54939189 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DGKE NM_003647 exon10 c.T1322A p.L441X CCAGCTTGGAAGG . 77.0 7.0 91.0 0.0 . 47 . . Atlas-SNP BZRAP1 9256 hgsc.bcm.edu hg19 17 56382773 56382773 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . BZRAP1 NM_004758 exon29 c.G5408T p.G1803V TCCATGCCCCCAA . 147.0 16.0 162.0 0.0 . 287 . . Atlas-SNP TANC2 26115 hgsc.bcm.edu hg19 17 61278235 61278235 + Missense_Mutation SNP C C A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TANC2 NM_025185 exon5 c.C464A p.T155K TCAGTACAAATGC . 236.0 40.0 218.0 0.0 . 266 . . Atlas-SNP CYB561 1534 hgsc.bcm.edu hg19 17 61513081 61513081 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CYB561 NM_001915 exon4 c.G373A p.G125R GGATCCCGCACCA . 137.0 16.0 135.0 0.0 . 15 . . Atlas-SNP CEP95 90799 hgsc.bcm.edu hg19 17 62533182 62533182 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CEP95 NM_138363 exon19 c.A2241G p.I747M AGCCATATCACAG . 425.0 109.0 386.0 0.0 . 103 . . Atlas-SNP PRKAR1A 5573 hgsc.bcm.edu hg19 17 66521090 66521090 + Silent SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PRKAR1A NM_001276290 exon5 c.A540C p.G180G TCAAGGAGAGACG . 96.0 22.0 64.0 0.0 . 48 . . Atlas-SNP CD300LF 146722 hgsc.bcm.edu hg19 17 72694567 72694567 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CD300LF NM_139018 exon4 c.T500A p.L167Q AGCAGCAGCAATA . 92.0 14.0 87.0 0.0 . 55 . . Atlas-SNP UBALD2 283991 hgsc.bcm.edu hg19 17 74266433 74266433 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . NM_182565 exon3 c.C342T p.A114A CTGGGCCTCGTCC . 88.0 16.0 56.0 0.0 . . . . Atlas-SNP CYTH1 9267 hgsc.bcm.edu hg19 17 76778291 76778291 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CYTH1 NM_017456 exon1 c.C15G p.D5E GTAGCTGTCGTCC . 67.0 6.0 50.0 0.0 . 36 . . Atlas-SNP AATK 9625 hgsc.bcm.edu hg19 17 79095855 79095855 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . AATK NM_001080395 exon11 c.A1881T p.A627A CCAGTCTGCATCC . 75.0 9.0 64.0 0.0 . 102 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7013922 7013922 + Silent SNP G G A rs375804587 TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 LAMA1,NS,carcinoma,0,1 LAMA1 NM_005559 exon23 c.C3255T p.P1085P ACAGTCGGGAAAG . 103.0 20.0 156.0 0.0 . 458 . . Atlas-SNP DSG4 147409 hgsc.bcm.edu hg19 18 28979346 28979346 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DSG4 NM_001134453 exon9 c.A1117T p.R373X CCTGTGAGAATTC . 110.0 23.0 152.0 0.0 . 343 . . Atlas-SNP CDC34 997 hgsc.bcm.edu hg19 19 541500 541500 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CDC34 NM_004359 exon5 c.C659T p.A220V AGGAGGCCGACAG . 115.0 12.0 101.0 0.0 . 5 . . Atlas-SNP GRIN3B 116444 hgsc.bcm.edu hg19 19 1003596 1003596 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . GRIN3B NM_138690 exon2 c.A894T p.Q298H TGTGCAACTGGTG . 112.0 9.0 100.0 0.0 . 46 . . Atlas-SNP KLF16 83855 hgsc.bcm.edu hg19 19 1854493 1854493 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KLF16 NM_031918 exon2 c.A724T p.S242C CGGGGCTGGGCGC . 67.0 24.0 52.0 0.0 . 9 . . Atlas-SNP CREB3L3 84699 hgsc.bcm.edu hg19 19 4171378 4171378 + Splice_Site SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CREB3L3 NM_001271995 exon9 c.973-2A>G . TCCACCAGGTCCT . 70.0 29.0 73.0 0.0 . 53 . . Atlas-SNP CREB3L3 84699 hgsc.bcm.edu hg19 19 4171711 4171711 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CREB3L3 NM_032607 exon10 c.A1131T p.P377P TGTGCCAGGCTCC . 171.0 11.0 184.0 0.0 . 53 . . Atlas-SNP TNFSF14 8740 hgsc.bcm.edu hg19 19 6670072 6670072 + Missense_Mutation SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TNFSF14 NM_003807 exon2 c.G9C p.E3D GACACTCTCCTCC . 58.0 4.0 48.0 0.0 . 40 . . Atlas-SNP KANK3 256949 hgsc.bcm.edu hg19 19 8387768 8387768 + Silent SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KANK3 NM_198471 exon11 c.T2421G p.G807G TCCTTCACCAGGT . 58.0 8.0 41.0 0.0 . 35 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 8966763 8966763 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MUC16 NM_024690 exon81 c.C43190T p.P14397L GCCAGTGGCGAGA . 102.0 15.0 97.0 0.0 . 4315 . . Atlas-SNP ZNF491 126069 hgsc.bcm.edu hg19 19 11917800 11917800 + Silent SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF491 NM_152356 exon3 c.A1032T p.I344I TCGAATACATGGA . 89.0 28.0 91.0 0.0 . 61 . . Atlas-SNP ZNF709 163051 hgsc.bcm.edu hg19 19 12575440 12575440 + Silent SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF709 NM_152601 exon4 c.C1296A p.S432S AGAACTGGAACAA . 101.0 16.0 96.0 0.0 . 80 . . Atlas-SNP CCDC130 81576 hgsc.bcm.edu hg19 19 13873731 13873731 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CCDC130 NM_030818 exon10 c.G1040A p.S347N AGTGCAGCAGCCC . 155.0 58.0 161.0 0.0 . 25 . . Atlas-SNP UPF1 5976 hgsc.bcm.edu hg19 19 18961531 18961531 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . UPF1 NM_002911 exon5 c.A664T p.I222F AAGGACATCAACT . 105.0 7.0 105.0 0.0 . 88 . . Atlas-SNP ETHE1 23474 hgsc.bcm.edu hg19 19 44012166 44012166 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ETHE1 NM_014297 exon6 c.G642A p.R214R GGTGAGCCGAGGG . 75.0 8.0 62.0 0.0 . 7 . . Atlas-SNP ZNF221 7638 hgsc.bcm.edu hg19 19 44469460 44469460 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF221 NM_013359 exon5 c.A284T p.Q95L CAAGCCAAAGAGA . 183.0 19.0 198.0 0.0 . 59 . . Atlas-SNP CCDC114 93233 hgsc.bcm.edu hg19 19 48806026 48806026 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CCDC114 NM_144577 exon10 c.A1054T p.K352X GCACCTTGTCCAT . 62.0 9.0 61.0 0.0 . 100 . . Atlas-SNP PIH1D1 55011 hgsc.bcm.edu hg19 19 49954058 49954058 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PIH1D1 NM_017916 exon2 c.A138T p.T46T GATTTGTGTCGAT . 77.0 29.0 67.0 0.0 . 23 . . Atlas-SNP MYH14 79784 hgsc.bcm.edu hg19 19 50752386 50752386 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MYH14 NM_001077186 exon13 c.A1472T p.E491V GCTTTGAGATCTT . 153.0 14.0 135.0 0.0 . 261 . . Atlas-SNP EMC10 284361 hgsc.bcm.edu hg19 19 50984225 50984225 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . NM_175063 exon6 c.C669T p.F223F CTTCTTCGCCAAA . 149.0 27.0 144.0 0.0 . . . . Atlas-SNP SHANK1 50944 hgsc.bcm.edu hg19 19 51201148 51201148 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SHANK1 NM_016148 exon12 c.T1813A p.S605T AGTCAGAGGGGAA . 41.0 12.0 57.0 0.0 . 210 . . Atlas-SNP ZNF320 162967 hgsc.bcm.edu hg19 19 53384338 53384338 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF320 NM_207333 exon4 c.T1041A p.H347Q CCTCCTATGTCTT . 81.0 23.0 77.0 0.0 . 67 . . Atlas-SNP VSTM1 284415 hgsc.bcm.edu hg19 19 54545063 54545063 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . VSTM1 NM_198481 exon8 c.T561C p.D187D GGATAAATCTGCC . 58.0 11.0 84.0 0.0 . 30 . . Atlas-SNP FIZ1 84922 hgsc.bcm.edu hg19 19 56109118 56109118 + Silent SNP C C G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FIZ1 NM_032836 exon2 c.G114C p.L38L GCGCCGCAGGTCT . 202.0 18.0 193.0 0.0 . 29 . . Atlas-SNP ZNF582 147948 hgsc.bcm.edu hg19 19 56896349 56896349 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF582 NM_144690 exon5 c.A437T p.H146L TCTTCATGTCTGA . 70.0 28.0 73.0 0.0 . 56 . . Atlas-SNP CDC25B 994 hgsc.bcm.edu hg19 20 3781408 3781408 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CDC25B NM_021873 exon6 c.A478T p.S160C GGCCACAGCCCCG . 97.0 14.0 106.0 0.0 . 76 . . Atlas-SNP SMOX 54498 hgsc.bcm.edu hg19 20 4163397 4163397 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SMOX NM_175839 exon5 c.T1271A p.L424Q ATGTGCTGAGCGG . 85.0 31.0 57.0 0.0 . 119 . . Atlas-SNP XRN2 22803 hgsc.bcm.edu hg19 20 21362681 21362681 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . XRN2 NM_012255 exon28 c.G2634A p.Q878Q CCAGCAGCAAAGG . 84.0 13.0 54.0 0.0 . 90 . . Atlas-SNP THBD 7056 hgsc.bcm.edu hg19 20 23028430 23028430 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . THBD NM_000361 exon1 c.C1712T p.T571M TGCGGCGTCCGCT . 144.0 8.0 104.0 0.0 . 26 . . Atlas-SNP REM1 28954 hgsc.bcm.edu hg19 20 30070206 30070206 + Silent SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . REM1 NM_014012 exon4 c.G540T p.R180R GCTGCGGCGCACA . 71.0 9.0 79.0 0.0 . 54 . . Atlas-SNP MYLK2 85366 hgsc.bcm.edu hg19 20 30408220 30408220 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MYLK2 NM_033118 exon3 c.A344T p.Q115L CTGAGCAGGGAGC . 1612.0 314.0 1187.0 0.0 . 76 . . Atlas-SNP E2F1 1869 hgsc.bcm.edu hg19 20 32266109 32266109 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . E2F1 NM_005225 exon4 c.A623T p.Q208L AGGTCCTGGGTCA . 175.0 38.0 132.0 0.0 . 41 . . Atlas-SNP MAP1LC3A 84557 hgsc.bcm.edu hg19 20 33147194 33147194 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . MAP1LC3A NM_181509 exon4 c.T152A p.L51Q CCGTCCTGGACAA . 131.0 17.0 103.0 0.0 . 10 . . Atlas-SNP DHX35 60625 hgsc.bcm.edu hg19 20 37662954 37662954 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DHX35 NM_021931 exon21 c.A2061G p.Q687Q TCAACAAGGAACG . 73.0 19.0 45.0 0.0 . 82 . . Atlas-SNP HNF4A 3172 hgsc.bcm.edu hg19 20 43058295 43058295 + Missense_Mutation SNP A A T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . HNF4A NM_000457 exon10 c.A1415T p.E472V AGCAGGAAGTTAT . 132.0 15.0 121.0 0.0 . 150 . . Atlas-SNP PABPC1L 80336 hgsc.bcm.edu hg19 20 43566766 43566766 + Missense_Mutation SNP G G C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PABPC1L NM_001124756 exon13 c.G1710C p.M570I GGGCATGCTGCTG . 126.0 10.0 117.0 0.0 . 59 . . Atlas-SNP ZNF335 63925 hgsc.bcm.edu hg19 20 44596976 44596976 + Silent SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ZNF335 NM_022095 exon4 c.G468A p.E156E GCCATCCTCAGCA . 79.0 7.0 59.0 0.0 . 115 . . Atlas-SNP PREX1 57580 hgsc.bcm.edu hg19 20 47361579 47361579 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PREX1 NM_020820 exon3 c.A397T p.N133Y AAACATTCCCAAG . 164.0 18.0 109.0 0.0 . 441 . . Atlas-SNP STX16 8675 hgsc.bcm.edu hg19 20 57246334 57246334 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . STX16 NM_001001433 exon7 c.G773A p.G258E ACTTAGGGGCGAT . 125.0 15.0 98.0 0.0 . 36 . . Atlas-SNP BIRC7 79444 hgsc.bcm.edu hg19 20 61869278 61869278 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . BIRC7 NM_139317 exon2 c.T373A p.F125I AGGTGCTTCTTCT . 180.0 26.0 140.0 0.0 . 25 . . Atlas-SNP IFNAR2 3455 hgsc.bcm.edu hg19 21 34625087 34625087 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IFNAR2 NM_207585 exon7 c.A661G p.I221V GCAGTAATAAAGT . 169.0 34.0 181.0 0.0 . 44 . . Atlas-SNP HLCS 3141 hgsc.bcm.edu hg19 21 38308987 38308987 + Missense_Mutation SNP C C T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . HLCS NM_000411 exon5 c.G758A p.G253D AAGCCACCAAAGG . 116.0 23.0 166.0 0.0 . 64 . . Atlas-SNP SLC5A1 6523 hgsc.bcm.edu hg19 22 32462982 32462982 + Missense_Mutation SNP A A C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . SLC5A1 NM_000343 exon3 c.A268C p.T90P GCCGGGACTGGGG . 88.0 7.0 105.0 0.0 . 80 . . Atlas-SNP TOMM22 56993 hgsc.bcm.edu hg19 22 39078014 39078014 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TOMM22 NM_020243 exon1 c.G31A p.G11R GGTGCAGGGGAAC . 129.0 25.0 161.0 0.0 . 10 . . Atlas-SNP PHEX 5251 hgsc.bcm.edu hg19 X 22231054 22231054 + Missense_Mutation SNP T T C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PHEX NM_000444 exon16 c.T1679C p.F560S CTTTCTTTTGGGG . 206.0 65.0 178.0 0.0 . 95 . . Atlas-SNP WDR45 11152 hgsc.bcm.edu hg19 X 48935320 48935320 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . WDR45 NM_007075 exon5 c.A217T p.K73X AGAACTTGGGACT . 75.0 23.0 66.0 0.0 . 40 . . Atlas-SNP ALAS2 212 hgsc.bcm.edu hg19 X 55052401 55052401 + Silent SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ALAS2 NM_001037968 exon3 c.C105T p.C35C CACTGGGCAGCAC . 54.0 24.0 66.0 0.0 . 163 . . Atlas-SNP KLF8 11279 hgsc.bcm.edu hg19 X 56295811 56295811 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . KLF8 NM_001159296 exon5 c.T647A p.V216E TTTTAGTGAAAGT . 36.0 11.0 26.0 0.0 . 38 . . Atlas-SNP RBM41 55285 hgsc.bcm.edu hg19 X 106312542 106312542 + Missense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . RBM41 NM_001171080 exon6 c.A1018T p.I340F ATTGAATTGGAGG . 110.0 34.0 92.0 0.0 . 34 . . Atlas-SNP IRS4 8471 hgsc.bcm.edu hg19 X 107975901 107975901 + Missense_Mutation SNP G G T novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . IRS4 NM_003604 exon1 c.C3674A p.P1225H TCCGGGGGTCTTG . 150.0 79.0 150.0 0.0 . 253 . . Atlas-SNP THOC2 57187 hgsc.bcm.edu hg19 X 122755374 122755374 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . THOC2 NM_001081550 exon31 c.A3850T p.K1284X GAGTCTTTTCTTT . 73.0 11.0 38.0 0.0 . 310 . . Atlas-SNP THOC2 57187 hgsc.bcm.edu hg19 X 122755376 122755376 + Missense_Mutation SNP T T G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . THOC2 NM_001081550 exon31 c.A3848C p.E1283A GTCTTTTCTTTTT . 71.0 11.0 38.0 0.0 . 310 . . Atlas-SNP DCAF12L2 340578 hgsc.bcm.edu hg19 X 125299819 125299819 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . DCAF12L2 NM_001013628 exon1 c.C89T p.A30V TCCGCCGCCGCTA . 152.0 23.0 65.0 0.0 . 157 . . Atlas-SNP USP26 83844 hgsc.bcm.edu hg19 X 132161579 132161579 + Silent SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . USP26 NM_031907 exon1 c.T670C p.L224L CTTTTAACTTCAA . 108.0 27.0 54.0 0.0 . 135 . . Atlas-SNP FHL1 2273 hgsc.bcm.edu hg19 X 135291566 135291566 + Missense_Mutation SNP A A G novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . FHL1 NM_001159702 exon7 c.A853G p.R285G CTTTATAGAAAAA . 96.0 23.0 50.0 0.0 . 114 . . Atlas-SNP BRS3 680 hgsc.bcm.edu hg19 X 135570516 135570516 + Silent SNP T T A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . BRS3 NM_001727 exon1 c.T243A p.V81V AACAGTTCCAAAT . 187.0 41.0 89.0 0.0 . 62 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12818 12818 + Missense_Mutation SNP G G A novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . . ENST00000361567 exon1 c.G482A p.R161Q ACGCCCGAGCAGA . 27.0 19.0 19.0 0.0 . . . . Atlas-SNP TXN2 25828 hgsc.bcm.edu hg19 22 36876815 36876815 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TXN2 NM_012473 exon2 c.71delG p.W24fs . . 82.0 15.0 101.0 0.0 . 15 . . Atlas-INDEL TMC6 11322 hgsc.bcm.edu hg19 17 76121042 76121042 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . TMC6 NM_001127198 exon7 c.562delA p.K188fs . . 95.0 10.0 100.0 0.0 . 42 . . Atlas-INDEL HCN4 10021 hgsc.bcm.edu hg19 15 73636059 73636059 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . HCN4 NM_005477 exon2 c.877delA p.T293fs . . 159.0 37.0 125.0 0.0 . 150 . . Atlas-INDEL COQ6 51004 hgsc.bcm.edu hg19 14 74428174 74428177 + Frame_Shift_Del DEL GTCC GTCC - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 GTCC GTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . COQ6 NM_182476 exon10 c.1110_1113del p.370_371del . . 63.0 13.0 79.0 0.0 . 27 . . Atlas-INDEL APP 351 hgsc.bcm.edu hg19 21 27328044 27328044 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . APP NM_001204301 exon12 c.1485delG p.K495fs . . 98.0 19.0 149.0 0.0 . 90 . . Atlas-INDEL EGFR 1956 hgsc.bcm.edu hg19 7 55248998 55248999 + In_Frame_Ins INS - - TGGCCAGCG novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 EGFR,caecum,carcinoma,0,1 EGFR NM_005228 exon20 c.2296_2297insTGGCCAGCG p.M766delinsMASV . . 145.0 19.0 110.0 0.0 . 20426 . . Atlas-INDEL ACLY 47 hgsc.bcm.edu hg19 17 40063809 40063810 + Frame_Shift_Ins INS - - C novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . ACLY NM_001096 exon7 c.633_634insG p.G211fs . . 92.0 39.0 77.0 0.0 . 85 . . Atlas-INDEL PRSS48 345062 hgsc.bcm.edu hg19 4 152203321 152203321 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . PRSS48 NM_183375 exon3 c.236delA p.Y79fs . . 135.0 21.0 94.0 0.0 . 91 . . Atlas-INDEL EPM2A 7957 hgsc.bcm.edu hg19 6 146056478 146056478 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . EPM2A NM_001018041 exon1 c.158delC p.A53fs . . 164.0 36.0 150.0 0.0 . 21 . . Atlas-INDEL CSMD1 64478 hgsc.bcm.edu hg19 8 3087715 3087715 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACI-01A-11D-A40R-10 TCGA-DD-AACI-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 247f1556-4111-4fee-ab12-312a9cd3b2ce 145d1bb3-e78f-4ac7-9b82-12983f7080e4 . CSMD1 NM_033225 exon27 c.4193delA p.Q1398fs . . 155.0 13.0 109.0 0.0 . 1469 . . Atlas-INDEL