Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm PHTF1 10745 hgsc.bcm.edu hg19 1 114254606 114254606 + Missense_Mutation SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PHTF1 NM_006608 exon8 c.G913T p.V305F TCTTAACTTCACA . 108.0 62.0 106.0 0.0 . 69 . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179609571 179609571 + Silent SNP A A G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . TDRD5 NM_173533 exon11 c.A1791G p.R597R GGTGAGACCAGTA . 72.0 20.0 64.0 0.0 . 149 . . Atlas-SNP PTGS2 5743 hgsc.bcm.edu hg19 1 186647479 186647479 + Missense_Mutation SNP C C G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PTGS2 NM_000963 exon4 c.G371C p.S124T TCCCAGCTTTTGT . 161.0 12.0 140.0 0.0 . 144 . . Atlas-SNP KIF21B 23046 hgsc.bcm.edu hg19 1 200946498 200946498 + Silent SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . KIF21B NM_001252102 exon31 c.G4167T p.S1389S CTGGCCCGAGGAC . 96.0 52.0 111.0 0.0 . 208 . . Atlas-SNP CACNA1S 779 hgsc.bcm.edu hg19 1 201017755 201017755 + Missense_Mutation SNP T T A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . CACNA1S NM_000069 exon36 c.A4396T p.T1466S AGAGTGTGGCATT . 50.0 29.0 47.0 0.0 . 249 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242035468 242035468 + Missense_Mutation SNP A A G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . EXO1 NM_130398 exon12 c.A1402G p.T468A GGACCTACTAACA . 381.0 130.0 329.0 0.0 . 103 . . Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207172701 207172701 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ZDBF2 NM_020923 exon5 c.T3449C p.V1150A TGGAAGTTAAGAA . 124.0 50.0 124.0 0.0 . 531 . . Atlas-SNP DGKD 8527 hgsc.bcm.edu hg19 2 234360641 234360641 + Silent SNP C C T rs375913920 TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . DGKD NM_152879 exon18 c.C2199T p.P733P CTTACCCGGTGGC . 65.0 26.0 59.0 0.0 . 106 . . Atlas-SNP ZFYVE20 64145 hgsc.bcm.edu hg19 3 15115634 15115634 + Missense_Mutation SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ZFYVE20 NM_022340 exon14 c.G2010T p.E670D TTCCTCCTCCTCG . 48.0 22.0 70.0 0.0 . 61 . . Atlas-SNP ALDH1L1 10840 hgsc.bcm.edu hg19 3 125856710 125856710 + Silent SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ALDH1L1 NM_001270364 exon10 c.G1200T p.L400L CACTAACAGCTGG . 107.0 36.0 113.0 0.0 . 138 . . Atlas-SNP SLC9A9 285195 hgsc.bcm.edu hg19 3 142987725 142987725 + Missense_Mutation SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a SLC9A9,NS,carcinoma,0,1 SLC9A9 NM_173653 exon15 c.G1702T p.A568S CATAGGCTTGAGG . 87.0 41.0 113.0 0.0 . 117 . . Atlas-SNP PLSCR1 5359 hgsc.bcm.edu hg19 3 146234856 146234856 + Silent SNP G G T rs377240309 alternate_allele TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PLSCR1 NM_021105 exon8 c.C837A p.I279I GAACTGGATTCCA . 169.0 32.0 167.0 0.0 . 35 . . Atlas-SNP MFSD1 64747 hgsc.bcm.edu hg19 3 158531837 158531837 + Silent SNP C C T rs147447476 TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a MFSD1_ENST00000415822,right_lower_lobe,carcinoma,0,2 MFSD1 NM_022736 exon7 c.C780T p.L260L AACCCTCGGGATC . 55.0 33.0 73.0 0.0 . 88 . C|1.000;T|0.000 Atlas-SNP ZCCHC4 29063 hgsc.bcm.edu hg19 4 25314444 25314444 + Silent SNP A A C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ZCCHC4 NM_024936 exon1 c.A13C p.R5R GCCTCCAGGAATG . 44.0 19.0 55.0 0.0 . 34 . . Atlas-SNP PDLIM4 8572 hgsc.bcm.edu hg19 5 131606786 131606786 + Missense_Mutation SNP G G T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PDLIM4 NM_003687 exon4 c.G506T p.S169I CCCCCAGGTAGCA . 99.0 4.0 98.0 0.0 . 22 . . Atlas-SNP UNC5A 90249 hgsc.bcm.edu hg19 5 176306745 176306745 + Missense_Mutation SNP A A T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . UNC5A NM_133369 exon15 c.A2387T p.K796M CCTCCAAGCCCAG . 73.0 13.0 85.0 0.0 . 76 . . Atlas-SNP C5orf45 51149 hgsc.bcm.edu hg19 5 179274998 179274998 + Missense_Mutation SNP T T G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . C5orf45 NM_016175 exon3 c.A195C p.Q65H TGAAACTTGTCCC . 81.0 32.0 105.0 0.0 . 23 . . Atlas-SNP DAXX 1616 hgsc.bcm.edu hg19 6 33289254 33289254 + Missense_Mutation SNP A A C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . DAXX NM_001141970 exon3 c.T334G p.L112V AGGCCAAAAACAG . 83.0 33.0 79.0 0.0 . 111 . . Atlas-SNP PRSS35 167681 hgsc.bcm.edu hg19 6 84233828 84233828 + Missense_Mutation SNP T T G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PRSS35 NM_153362 exon2 c.T668G p.L223R AGCATCTGCGGGA . 156.0 34.0 161.0 0.0 . 60 . . Atlas-SNP FERD3L 222894 hgsc.bcm.edu hg19 7 19184898 19184898 + Missense_Mutation SNP G G A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a FERD3L,scalp,carcinoma,0,1 FERD3L NM_152898 exon1 c.C88T p.L30F CGCAGAGGAGAGG . 32.0 11.0 41.0 0.0 . 63 . . Atlas-SNP IGF2BP3 10643 hgsc.bcm.edu hg19 7 23509595 23509595 + Silent SNP C C T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . IGF2BP3 NM_006547 exon1 c.G135A p.P45P CTCGTCCGGGCAG . 51.0 13.0 48.0 0.0 . 71 . . Atlas-SNP ABCA13 154664 hgsc.bcm.edu hg19 7 48313643 48313643 + Missense_Mutation SNP T T G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ABCA13 NM_152701 exon17 c.T4380G p.N1460K TGTCAATATTTAC . 127.0 49.0 116.0 0.0 . 1192 . . Atlas-SNP LETM2 137994 hgsc.bcm.edu hg19 8 38257839 38257839 + Missense_Mutation SNP T T A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a LETM2,rectum,carcinoma,0,1 LETM2 NM_001199659 exon5 c.T554A p.F185Y CAAAATTTCTTCA . 40.0 12.0 66.0 0.0 . 57 . . Atlas-SNP ADAM18 8749 hgsc.bcm.edu hg19 8 39468133 39468133 + Missense_Mutation SNP A A G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ADAM18 NM_001190956 exon6 c.A430G p.K144E CAAATGAAAAATA . 308.0 142.0 444.0 1.0 . 169 . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142151392 142151392 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . DENND3 NM_014957 exon4 c.T352C p.Y118H TTTCCCTATTACA . 73.0 8.0 51.0 0.0 . 127 . . Atlas-SNP CCIN 881 hgsc.bcm.edu hg19 9 36170372 36170372 + Silent SNP C C T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . CCIN NM_005893 exon1 c.C873T p.G291G CCACGGCCAGTTC . 35.0 19.0 56.0 0.0 . 56 . . Atlas-SNP ANK3 288 hgsc.bcm.edu hg19 10 61828727 61828727 + Missense_Mutation SNP G G A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a .,2 ANK3 NM_020987 exon37 c.C11912T p.T3971I GTGGTAGTGGTGG . 52.0 4.0 62.0 1.0 . 703 . . Atlas-SNP PALD1 27143 hgsc.bcm.edu hg19 10 72326463 72326463 + Missense_Mutation SNP C C T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . . NM_014431 exon20 c.C2545T p.P849S CTCGAGCCCTCTG . 13.0 7.0 26.0 0.0 . . . . Atlas-SNP KRTAP5-8 57830 hgsc.bcm.edu hg19 11 71249530 71249530 + Silent SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . KRTAP5-8 NM_021046 exon1 c.T429C p.C143C CTGCTGTTCCCAG . 99.0 15.0 79.0 0.0 . 28 . . Atlas-SNP EFCAB4B 84766 hgsc.bcm.edu hg19 12 3788188 3788188 + Missense_Mutation SNP C C A rs3803135 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . EFCAB4B NM_001144958 exon6 c.G417T p.K139N ATACACCTTCTCT . 49.0 18.0 88.0 0.0 . 100 . C|0.862;T|0.138 Atlas-SNP SOX5 6660 hgsc.bcm.edu hg19 12 24048957 24048957 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . SOX5 NM_006940 exon2 c.A40G p.M14V AAGACATCCTGGA . 45.0 17.0 48.0 0.0 . 134 . . Atlas-SNP IL31 386653 hgsc.bcm.edu hg19 12 122657036 122657036 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . IL31 NM_001014336 exon3 c.A418G p.I140V GAGAAATAGTCAG . 72.0 26.0 102.0 0.0 . 23 . . Atlas-SNP DACH1 1602 hgsc.bcm.edu hg19 13 72440337 72440337 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . DACH1 NM_080759 exon1 c.A571G p.K191E CCATTTTGCACTC . 48.0 35.0 89.0 0.0 . 123 . . Atlas-SNP PSMB11 122706 hgsc.bcm.edu hg19 14 23512059 23512059 + Missense_Mutation SNP G G A rs368929459 TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . PSMB11 NM_001099780 exon1 c.G625A p.V209M TGCGCCGTGGCCC . 35.0 20.0 48.0 0.0 . 40 . . Atlas-SNP STON2 85439 hgsc.bcm.edu hg19 14 81744593 81744593 + Missense_Mutation SNP G G T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . STON2 NM_001256430 exon6 c.C1062A p.S354R TCTTTGGCTTTTG . 96.0 5.0 121.0 0.0 . 94 . . Atlas-SNP ATG2B 55102 hgsc.bcm.edu hg19 14 96779699 96779699 + Missense_Mutation SNP T T C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ATG2B NM_018036 exon24 c.A3716G p.H1239R TGAACATGAAAAG . 367.0 143.0 387.0 0.0 . 169 . . Atlas-SNP EIF3J 8669 hgsc.bcm.edu hg19 15 44849749 44849749 + Nonsense_Mutation SNP G G T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . EIF3J NM_003758 exon6 c.G472T p.E158X TTTACAGAGTTTG . 77.0 27.0 66.0 0.0 . 29 . . Atlas-SNP ADAD2 161931 hgsc.bcm.edu hg19 16 84228736 84228736 + Silent SNP G G T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ADAD2 NM_139174 exon5 c.G885T p.L295L CCTCCTGTTGGAC . 56.0 37.0 125.0 0.0 . 46 . . Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975317 38975317 + Silent SNP G G A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . KRT10 NM_000421 exon7 c.C1470T p.G490G GCCGTGGCCGCCG . 77.0 9.0 27.0 0.0 . 56 . . Atlas-SNP KRT10 3858 hgsc.bcm.edu hg19 17 38975319 38975319 + Missense_Mutation SNP C C T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . KRT10 NM_000421 exon7 c.G1468A p.G490S CGTGGCCGCCGCC . 74.0 8.0 27.0 0.0 . 56 . . Atlas-SNP UBTF 7343 hgsc.bcm.edu hg19 17 42289011 42289011 + Missense_Mutation SNP T T G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . UBTF NM_014233 exon10 c.A1010C p.Q337P TCCTTCTGGGACA . 23.0 8.0 26.0 0.0 . 65 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9076110 9076110 + Missense_Mutation SNP G G C novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . MUC16 NM_024690 exon3 c.C11336G p.S3779C CCTATAGAGAAGG . 49.0 32.0 83.0 0.0 . 4315 . . Atlas-SNP DPF1 8193 hgsc.bcm.edu hg19 19 38703032 38703032 + Splice_Site SNP C C T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . DPF1 NM_004647 exon11 c.961-1G>A . GGCACCCTGGGGG . 109.0 38.0 81.0 0.0 . 54 . . Atlas-SNP TNNC2 7125 hgsc.bcm.edu hg19 20 44451995 44451995 + Missense_Mutation SNP C C G novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . TNNC2 NM_003279 exon6 c.G475C p.V159L ACTGCACGCCCTC . 39.0 21.0 38.0 0.0 . 12 . . Atlas-SNP SGSM1 129049 hgsc.bcm.edu hg19 22 25308673 25308673 + Missense_Mutation SNP G G A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . SGSM1 NM_001039948 exon23 c.G3047A p.G1016E CCCACGGAGGCGC . 85.0 11.0 95.0 0.0 . 150 . . Atlas-SNP RBM10 8241 hgsc.bcm.edu hg19 X 47030582 47030582 + Missense_Mutation SNP G G T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . RBM10 NM_001204468 exon4 c.G552T p.E184D GGAGGAGGATGAG . 52.0 4.0 52.0 0.0 . 117 . . Atlas-SNP IRAK1 3654 hgsc.bcm.edu hg19 X 153277357 153277357 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . IRAK1 NM_001569 exon14 c.G2092T p.E698X CCTGTTCCAGGCC . 24.0 16.0 19.0 0.0 . 107 . . Atlas-SNP CCNO 10309 hgsc.bcm.edu hg19 5 54529209 54529209 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . CCNO NM_021147 exon1 c.144delG p.P48fs . . 136.0 56.0 143.0 0.0 . 17 . . Atlas-INDEL TULP2 7288 hgsc.bcm.edu hg19 19 49399799 49399816 + Frame_Shift_Del DEL TTCAAACAGCCGCCGCTG TTCAAACAGCCGCCGCTG - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 TTCAAACAGCCGCCGCTG TTCAAACAGCCGCCGCTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . TULP2 NM_003323 exon4 c.85_100del p.29_34del . . 30.0 10.0 36.0 0.0 . 60 . . Atlas-INDEL FRMD5 84978 hgsc.bcm.edu hg19 15 44194417 44194418 + Frame_Shift_Ins INS - - T novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . FRMD5 NM_032892 exon7 c.595_596insA p.A199fs . . 48.0 23.0 65.0 0.0 . 45 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74272435 74272440 + In_Frame_Del DEL CATGTG CATGTG - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 CATGTG CATGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ALB NM_000477 exon3 c.226_231del p.76_77del . . 44.0 13.0 42.0 0.0 . 132 . . Atlas-INDEL AKAP9 10142 hgsc.bcm.edu hg19 7 91652251 91652251 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . AKAP9 NM_147185 exon14 c.4075delC p.Q1359fs . . 78.0 16.0 108.0 0.0 . 788 . . Atlas-INDEL ODF1 4956 hgsc.bcm.edu hg19 8 103573034 103573042 + In_Frame_Del DEL CCCGTGCAG CCCGTGCAG - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 CCCGTGCAG CCCGTGCAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a ODF1,NS,carcinoma,0,1 ODF1 NM_024410 exon2 c.674_682del p.225_228del . . 47.0 10.0 46.0 0.0 . 55 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74286007 74286007 + Frame_Shift_Del DEL G G - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . ALB NM_000477 exon14 c.1821delA p.L607fs . . 134.0 70.0 155.0 0.0 . 132 . . Atlas-INDEL KEAP1 9817 hgsc.bcm.edu hg19 19 10600016 10600019 + Frame_Shift_Del DEL ATAG ATAG - novel TCGA-DD-AACO-01A-11D-A40R-10 TCGA-DD-AACO-10A-01D-A40U-10 ATAG ATAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 42340dfc-2c44-47a6-b81d-99117a74110c 7b21aa0b-afe2-498f-890b-c71e1a5a372a . KEAP1 NM_012289 exon5 c.1558_1561del p.520_521del . . 67.0 40.0 131.0 0.0 . 182 . . Atlas-INDEL