Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA1751 85452 hgsc.bcm.edu hg19 1 1887238 1887238 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KIAA1751 NM_001080484 exon18 c.A2068T p.S690C AGAAGCTGGTGGC . 71.0 17.0 49.0 0.0 . 92 . . Atlas-SNP THAP3 90326 hgsc.bcm.edu hg19 1 6685353 6685353 + Splice_Site SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . THAP3 NM_001195753 exon2 c.74+1G>T . CCACCGGTAAGAG . 56.0 23.0 75.0 0.0 . 43 . . Atlas-SNP AIM1L 55057 hgsc.bcm.edu hg19 1 26670848 26670848 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . AIM1L NM_001039775 exon2 c.C2301T p.F767F ATCCAGGAATATC . 25.0 11.0 21.0 0.0 . 98 . . Atlas-SNP COL16A1 1307 hgsc.bcm.edu hg19 1 32163575 32163575 + Nonsense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COL16A1 NM_001856 exon6 c.C589T p.R197X GTCGTCGGGGCCC . 166.0 14.0 170.0 0.0 . 137 . . Atlas-SNP MFSD2A 84879 hgsc.bcm.edu hg19 1 40431684 40431684 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MFSD2A NM_001136493 exon6 c.A751G p.T251A AGGGAAACGGTGA . 143.0 38.0 141.0 0.0 . 53 . . Atlas-SNP FOXD3 27022 hgsc.bcm.edu hg19 1 63789072 63789072 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FOXD3 NM_012183 exon1 c.G343A p.A115T GGCGGCGCGAGCG . 50.0 4.0 49.0 0.0 . 15 . . Atlas-SNP PTPN22 26191 hgsc.bcm.edu hg19 1 114372603 114372603 + Missense_Mutation SNP G G C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPN22 NM_015967 exon17 c.C2102G p.T701S TCTAGAGTTCTTT . 228.0 49.0 211.0 0.0 . 90 . . Atlas-SNP IGSF3 3321 hgsc.bcm.edu hg19 1 117122106 117122106 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . IGSF3 NM_001542 exon11 c.A3302T p.H1101L TCCACATGGCAGG . 92.0 24.0 103.0 0.0 . 294 . . Atlas-SNP SSR2 6746 hgsc.bcm.edu hg19 1 155989929 155989929 + Silent SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SSR2 NM_003145 exon2 c.T30G p.A10A AAATAGAGCCAAC . 178.0 27.0 100.0 0.0 . 20 . . Atlas-SNP C1orf61 10485 hgsc.bcm.edu hg19 1 156384479 156384479 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . C1orf61 NM_006365 exon4 c.A138T p.R46S TGTGGCTCTATCG . 123.0 14.0 79.0 0.0 . 15 . . Atlas-SNP FCRLB 127943 hgsc.bcm.edu hg19 1 161697120 161697120 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FCRLB NM_001002901 exon6 c.A949T p.R317X TCCTTCAGAAAGC . 251.0 163.0 127.0 0.0 . 35 . . Atlas-SNP KIFAP3 22920 hgsc.bcm.edu hg19 1 170001030 170001030 + Nonsense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KIFAP3 NM_014970 exon8 c.C838T p.R280X TACCTCGTAATAG . 180.0 113.0 93.0 0.0 . 102 . . Atlas-SNP FMO1 2326 hgsc.bcm.edu hg19 1 171236812 171236812 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FMO1 NM_002021 exon3 c.T263A p.L88Q AATTCCTGGAATA . 152.0 90.0 90.0 0.0 . 79 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181767884 181767884 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 CACNA1E,NS,carcinoma,0,1 CACNA1E NM_001205293 exon48 c.C6856T p.R2286W CGGCGGCGGAGGC . 104.0 24.0 69.0 0.0 . 778 . . Atlas-SNP PRG4 10216 hgsc.bcm.edu hg19 1 186266079 186266079 + Silent SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PRG4 NM_001127708 exon2 c.T72G p.S24S TTCATCTCAAGGT . 133.0 69.0 91.0 0.0 . 259 . . Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208212331 208212331 + Splice_Site SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PLXNA2 NM_025179 exon26 c.4501-2A>T . AGGATCTACAAGT . 201.0 34.0 92.0 0.0 . 178 . . Atlas-SNP PTPN14 5784 hgsc.bcm.edu hg19 1 214538000 214538000 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPN14 NM_005401 exon18 c.A3290G p.Q1097R ACCGACTGGATCT . 189.0 83.0 92.0 0.0 . 168 . . Atlas-SNP NUP133 55746 hgsc.bcm.edu hg19 1 229584906 229584906 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NUP133 NM_018230 exon24 c.T3212C p.L1071P ATTTCCAGTTTTA . 96.0 45.0 55.0 0.0 . 111 . . Atlas-SNP OR2T12 127064 hgsc.bcm.edu hg19 1 248458135 248458135 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OR2T12 NM_001004692 exon1 c.T746C p.F249S CCATAAAAGAGTC . 305.0 30.0 169.0 0.0 . 113 . . Atlas-SNP MYT1L 23040 hgsc.bcm.edu hg19 2 1920989 1920989 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MYT1L NM_015025 exon11 c.G1600A p.V534I GAGGGACCCTATC . 101.0 24.0 90.0 0.0 . 241 . . Atlas-SNP PLEKHH2 130271 hgsc.bcm.edu hg19 2 43939487 43939487 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PLEKHH2 NM_172069 exon15 c.G2425A p.E809K CAGCCTGAGGGCA . 102.0 21.0 86.0 0.0 . 156 . . Atlas-SNP PREPL 9581 hgsc.bcm.edu hg19 2 44559599 44559599 + Missense_Mutation SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PREPL NM_001171603 exon9 c.A1352C p.K451T CCTACCTTGCTTT . 94.0 32.0 94.0 0.0 . 69 . . Atlas-SNP LHCGR 3973 hgsc.bcm.edu hg19 2 48915582 48915582 + Missense_Mutation SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . LHCGR NM_000233 exon11 c.C1354A p.L452I CAGAAAGTTCACT . 103.0 28.0 97.0 0.0 . 154 . . Atlas-SNP EIF2AK3 9451 hgsc.bcm.edu hg19 2 88887518 88887518 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . EIF2AK3 NM_004836 exon8 c.A1411G p.I471V GCAAGATTGAAAG . 797.0 188.0 785.0 0.0 . 160 . . Atlas-SNP RGPD4 285190 hgsc.bcm.edu hg19 2 108453058 108453058 + Missense_Mutation SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RGPD4 NM_182588 exon2 c.A73C p.K25Q TTTTAGAAGTCAA . 300.0 85.0 288.0 0.0 . 112 . . Atlas-SNP CCDC74B 91409 hgsc.bcm.edu hg19 2 130897154 130897154 + Silent SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CCDC74B NM_207310 exon8 c.C1117A p.R373R GGCGCCGTTTCTG . 167.0 44.0 186.0 0.0 . 27 . . Atlas-SNP GALNT3 2591 hgsc.bcm.edu hg19 2 166615986 166615986 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GALNT3 NM_004482 exon5 c.G933A p.L311L CGTGTTCAGATCT . 135.0 31.0 128.0 0.0 . 65 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179610419 179610419 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TTN NM_133379 exon46 c.A16708T p.N5570Y ACAGGTTATGGAA . 108.0 31.0 123.0 0.0 . 18412 . . Atlas-SNP ZNF804A 91752 hgsc.bcm.edu hg19 2 185801445 185801445 + Nonsense_Mutation SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF804A NM_194250 exon4 c.C1322G p.S441X GGCCATCAGAAAT . 308.0 85.0 323.0 0.0 . 322 . . Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210683819 210683819 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . UNC80 NM_182587 exon12 c.T1796C p.L599P GGAAACTCTGCAA . 162.0 34.0 146.0 0.0 . 280 . . Atlas-SNP OBSL1 23363 hgsc.bcm.edu hg19 2 220424039 220424039 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OBSL1 NM_001173431 exon9 c.G3134A p.R1045H ACCAGGCGGCAGC . 127.0 18.0 114.0 0.0 . 120 . . Atlas-SNP FAM124B 79843 hgsc.bcm.edu hg19 2 225244553 225244553 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FAM124B NM_001122779 exon2 c.A1105T p.I369F TTATGATGGTCAA . 129.0 44.0 127.0 0.0 . 71 . . Atlas-SNP SPHKAP 80309 hgsc.bcm.edu hg19 2 228855727 228855727 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SPHKAP NM_001142644 exon11 c.A4948G p.R1650G CAATTCTGTTTTC . 57.0 17.0 64.0 0.0 . 750 . . Atlas-SNP ILKAP 80895 hgsc.bcm.edu hg19 2 239079292 239079292 + Missense_Mutation SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ILKAP NM_030768 exon12 c.G1064C p.G355A GACTTCCCTTCCC . 235.0 65.0 218.0 0.0 . 42 . . Atlas-SNP CMTM6 54918 hgsc.bcm.edu hg19 3 32544113 32544113 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CMTM6 NM_017801 exon1 c.A125T p.K42M AAGCCCTTGAGAA . 162.0 57.0 103.0 0.0 . 5 . . Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38157966 38157966 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DLEC1 NM_007337 exon28 c.C3879T p.T1293T GGAGACCTATGTT . 67.0 19.0 59.0 0.0 . 278 . . Atlas-SNP ULK4 54986 hgsc.bcm.edu hg19 3 41977412 41977412 + Missense_Mutation SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ULK4 NM_017886 exon4 c.A259C p.I87L GAGCAATAACTGT . 90.0 27.0 70.0 0.0 . 150 . . Atlas-SNP TGM4 7047 hgsc.bcm.edu hg19 3 44938212 44938212 + Missense_Mutation SNP T T A rs142027211 TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TGM4 NM_003241 exon6 c.T561A p.N187K GAAAAATGTCCTG . 92.0 21.0 86.0 0.0 . 82 . T|1.000;A|0.000 Atlas-SNP RBM5 10181 hgsc.bcm.edu hg19 3 50137458 50137458 + Missense_Mutation SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RBM5 NM_005778 exon5 c.A383C p.D128A CTGCGGATGTGAG . 102.0 31.0 116.0 0.0 . 76 . . Atlas-SNP RBM5 10181 hgsc.bcm.edu hg19 3 50143082 50143082 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RBM5 NM_005778 exon10 c.A795G p.I265M CCTCATAAAAGAC . 128.0 34.0 115.0 0.0 . 76 . . Atlas-SNP SLMAP 7871 hgsc.bcm.edu hg19 3 57882301 57882301 + Missense_Mutation SNP G G C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SLMAP NM_007159 exon13 c.G1322C p.S441T AAAAAAGCAGTGA . 417.0 127.0 360.0 0.0 . 46 . . Atlas-SNP EPHA6 285220 hgsc.bcm.edu hg19 3 96945199 96945199 + Silent SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . EPHA6 NM_001080448 exon4 c.T1206G p.S402S AACTTCTGTCTGT . 111.0 27.0 126.0 0.0 . 439 . . Atlas-SNP OR5AC2 81050 hgsc.bcm.edu hg19 3 97806627 97806627 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OR5AC2 NM_054106 exon1 c.T611C p.F204S TTATTTTTGGTGC . 94.0 25.0 67.0 0.0 . 64 . . Atlas-SNP UPK1B 7348 hgsc.bcm.edu hg19 3 118906777 118906777 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . UPK1B NM_006952 exon3 c.A225G p.L75L TGTTCTAGGCATT . 115.0 35.0 120.0 0.0 . 27 . . Atlas-SNP KALRN 8997 hgsc.bcm.edu hg19 3 124207122 124207122 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KALRN NM_003947 exon29 c.A4350G p.P1450P TGTCCCAAAGAAA . 105.0 23.0 128.0 0.0 . 556 . . Atlas-SNP CCDC37 348807 hgsc.bcm.edu hg19 3 126137512 126137512 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CCDC37 NM_182628 exon7 c.A545T p.E182V CCAAAGAGGAGGC . 77.0 22.0 86.0 0.0 . 69 . . Atlas-SNP GATA2 2624 hgsc.bcm.edu hg19 3 128205213 128205213 + Splice_Site SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GATA2 NM_001145661 exon5 c.230-2A>T . GCGGGCTGCGGGC . 42.0 17.0 51.0 0.0 . 122 . . Atlas-SNP PRR23A 729627 hgsc.bcm.edu hg19 3 138724450 138724450 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PRR23A NM_001134659 exon1 c.C661T p.R221C GAAGGCGGAATTC . 228.0 55.0 206.0 0.0 . 35 . . Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178916869 178916869 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PIK3CA NM_006218 exon2 c.A256T p.T86S GATGAAACAAGAC . 285.0 77.0 271.0 0.0 . 8460 . . Atlas-SNP JAKMIP1 152789 hgsc.bcm.edu hg19 4 6027974 6027974 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . JAKMIP1 NM_001099433 exon21 c.C2477T p.A826V ATGAATGCTAGTG . 550.0 152.0 560.0 1.0 . 250 . . Atlas-SNP PDGFRA 5156 hgsc.bcm.edu hg19 4 55143655 55143655 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PDGFRA NM_006206 exon13 c.A1887G p.L629L GATGCTAAAACGT . 137.0 35.0 146.0 0.0 . 1583 . . Atlas-SNP AGPAT9 84803 hgsc.bcm.edu hg19 4 84516038 84516038 + Missense_Mutation SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . AGPAT9 NM_001256421 exon8 c.G779T p.R260I TTCAGAGAGCTAT . 78.0 22.0 74.0 0.0 . 41 . . Atlas-SNP EMCN 51705 hgsc.bcm.edu hg19 4 101386642 101386642 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . EMCN NM_001159694 exon4 c.T314C p.V105A ACTGTTACGTTTG . 108.0 34.0 99.0 0.0 . 37 . . Atlas-SNP MAML3 55534 hgsc.bcm.edu hg19 4 140640793 140640793 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MAML3 NM_018717 exon6 c.T3089A p.L1030H CCCGGGAGCGATG . 48.0 10.0 43.0 0.0 . 192 . . Atlas-SNP SCOC 60592 hgsc.bcm.edu hg19 4 141294779 141294779 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SCOC NM_001153484 exon1 c.G89A p.R30Q GTGGGCGGAGTGG . 61.0 14.0 67.0 0.0 . 11 . . Atlas-SNP FBXO8 26269 hgsc.bcm.edu hg19 4 175162348 175162348 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FBXO8 NM_012180 exon4 c.A478T p.K160X TACCCTTGGACAT . 97.0 29.0 107.0 0.0 . 34 . . Atlas-SNP IRX4 50805 hgsc.bcm.edu hg19 5 1879844 1879844 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . IRX4 NM_016358 exon4 c.C510T p.P170P CTTGGTGGGGTAG . 104.0 7.0 107.0 0.0 . 45 . . Atlas-SNP ZNF622 90441 hgsc.bcm.edu hg19 5 16463667 16463667 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF622 NM_033414 exon2 c.C810T p.H270H GGTCATGTGAGCC . 166.0 48.0 146.0 0.0 . 49 . . Atlas-SNP NNT 23530 hgsc.bcm.edu hg19 5 43702725 43702725 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NNT NM_182977 exon21 c.A2998G p.T1000A ATAGATACTGATT . 55.0 8.0 44.0 0.0 . 92 . . Atlas-SNP GPR98 84059 hgsc.bcm.edu hg19 5 89943496 89943496 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GPR98 NM_032119 exon17 c.A3204G p.R1068R AAGTAGACAGCAG . 125.0 38.0 140.0 0.0 . 605 . . Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102432254 102432254 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GIN1 NM_017676 exon7 c.A1285T p.S429C GTTCACTGGATTC . 121.0 34.0 119.0 0.0 . 53 . . Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115336354 115336354 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_173800 exon9 c.T1646C p.M549T TTCAAATGGTAAT . 99.0 27.0 97.0 0.0 . . . . Atlas-SNP PCDHB12 56124 hgsc.bcm.edu hg19 5 140589674 140589674 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PCDHB12 NM_018932 exon1 c.A1195G p.N399D GTAAATAATTACT . 190.0 46.0 156.0 0.0 . 179 . . Atlas-SNP LARS 51520 hgsc.bcm.edu hg19 5 145512586 145512586 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . LARS NM_020117 exon23 c.A2271T p.E757D CATGGCTTCCACA . 121.0 38.0 142.0 0.0 . 100 . . Atlas-SNP WWC1 23286 hgsc.bcm.edu hg19 5 167833201 167833201 + Splice_Site SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . WWC1 NM_015238 exon6 c.591-2A>T . TCTCCTAGAATCG . 122.0 45.0 104.0 0.0 . 98 . . Atlas-SNP PANK3 79646 hgsc.bcm.edu hg19 5 167986088 167986088 + Silent SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PANK3 NM_024594 exon6 c.A1011C p.A337A ATCCAGTGCATAT . 108.0 28.0 115.0 0.0 . 39 . . Atlas-SNP ADAMTS2 9509 hgsc.bcm.edu hg19 5 178541174 178541174 + Silent SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ADAMTS2 NM_014244 exon22 c.T3330A p.P1110P CTTCCCAGGCGGT . 294.0 54.0 135.0 0.0 . 190 . . Atlas-SNP STK19 8859 hgsc.bcm.edu hg19 6 31940408 31940408 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . STK19 NM_032454 exon3 c.C441T p.R147R GGCGCGCGCGGCT . 108.0 21.0 93.0 0.0 . 33 . . Atlas-SNP HLA-DOB 3112 hgsc.bcm.edu hg19 6 32782304 32782304 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . HLA-DOB NM_002120 exon3 c.A436T p.T146S AGCCTGTCACAGA . 165.0 27.0 139.0 0.0 . 17 . . Atlas-SNP FTSJD2 23070 hgsc.bcm.edu hg19 6 37411922 37411922 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FTSJD2 NM_015050 exon3 c.T281A p.L94H AGAAGCTTATGGT . 77.0 23.0 55.0 0.0 . 64 . . Atlas-SNP TTBK1 84630 hgsc.bcm.edu hg19 6 43250465 43250465 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 TTBK1,NS,carcinoma,0,1 TTBK1 NM_032538 exon14 c.G1987A p.V663M TTGCAGGTGTTCT . 89.0 26.0 56.0 0.0 . 124 . . Atlas-SNP RUNX2 860 hgsc.bcm.edu hg19 6 45390466 45390466 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RUNX2 NM_001024630 exon3 c.A195G p.Q65Q GCAGCAACAGCAG . 69.0 4.0 67.0 0.0 . 128 . . Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51613247 51613247 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PKHD1 NM_170724 exon58 c.A9167T p.Q3056L TAGGCCTGACCCT . 64.0 20.0 57.0 0.0 . 927 . . Atlas-SNP GOPC 57120 hgsc.bcm.edu hg19 6 117884420 117884420 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GOPC NM_020399 exon9 c.T1386C p.Y462Y AATTTAATAAGAT . 43.0 18.0 38.0 0.0 . 29 . . Atlas-SNP ADGB 79747 hgsc.bcm.edu hg19 6 147122997 147122997 + Silent SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ADGB NM_024694 exon35 c.T4668C p.D1556D AACAGATGAATTG . 251.0 106.0 217.0 0.0 . 93 . . Atlas-SNP KATNA1 11104 hgsc.bcm.edu hg19 6 149959640 149959640 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KATNA1 NM_007044 exon2 c.A44T p.E15V GCATATTCACGAG . 140.0 57.0 104.0 0.0 . 34 . . Atlas-SNP POLM 27434 hgsc.bcm.edu hg19 7 44119332 44119332 + Silent SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . POLM NM_013284 exon4 c.G480C p.L160L TATCTCCAGAGCC . 42.0 23.0 36.0 0.0 . 50 . . Atlas-SNP PTPN12 5782 hgsc.bcm.edu hg19 7 77236577 77236577 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPN12 NM_002835 exon9 c.A721G p.I241V GGTGCCATTTGTG . 195.0 41.0 163.0 0.0 . 83 . . Atlas-SNP SGCE 8910 hgsc.bcm.edu hg19 7 94252667 94252667 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SGCE NM_001099401 exon4 c.A433T p.N145Y TCAAATTATGCCT . 314.0 77.0 239.0 0.0 . 68 . . Atlas-SNP ACHE 43 hgsc.bcm.edu hg19 7 100490380 100490380 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ACHE NM_000665 exon3 c.C1128T p.G376G GCTGAAGCCTGGG . 67.0 24.0 70.0 0.0 . 80 . . Atlas-SNP KCNH2 3757 hgsc.bcm.edu hg19 7 150671846 150671846 + Missense_Mutation SNP A A G rs199473495 TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KCNH2 NM_000238 exon2 c.T260C p.L87P GCGCCCAGCAGTG . 213.0 88.0 168.0 0.0 . 157 . . Atlas-SNP VIPR2 7434 hgsc.bcm.edu hg19 7 158823365 158823365 + Missense_Mutation SNP T T A rs184356169 by1000genomes;alternate_allele TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . VIPR2 NM_003382 exon13 c.A1259T p.Q420L TGGAACTGCAGGG . 206.0 82.0 181.0 0.0 . 53 . T|0.999;G|0.001 Atlas-SNP CHRNA2 1135 hgsc.bcm.edu hg19 8 27320996 27320996 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CHRNA2 NM_000742 exon6 c.T964A p.S322T CCAGCGAGGTGGA . 175.0 34.0 148.0 0.0 . 48 . . Atlas-SNP FGFR1 2260 hgsc.bcm.edu hg19 8 38271457 38271457 + Silent SNP G G A rs369782405 TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 Q7Z2S2_HUMAN,NS,carcinoma,0,4 FGFR1 NM_001174067 exon18 c.C2364T p.I788I GGCCACGATGCGG . 120.0 45.0 91.0 0.0 . 284 . . Atlas-SNP OXR1 55074 hgsc.bcm.edu hg19 8 107751706 107751706 + Silent SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OXR1 NM_001198532 exon12 c.A2061T p.I687I AGACATAAATTCA . 151.0 26.0 95.0 0.0 . 190 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124383232 124383232 + Splice_Site SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ATAD2 NM_014109 exon7 c.640-2A>T . TTGCTCTAAAAAT . 121.0 62.0 57.0 0.0 . 160 . . Atlas-SNP MAFA 389692 hgsc.bcm.edu hg19 8 144512455 144512455 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MAFA NM_201589 exon1 c.T122A p.F41Y TGGCAGAAGCGCT . 62.0 12.0 41.0 0.0 . 9 . . Atlas-SNP CPSF1 29894 hgsc.bcm.edu hg19 8 145623168 145623168 + Splice_Site SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CPSF1 NM_013291 exon21 c.2073+1G>A . GGCCTACATGGTG . 82.0 14.0 53.0 0.0 . 92 . . Atlas-SNP SMARCA2 6595 hgsc.bcm.edu hg19 9 2115820 2115820 + Splice_Site SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SMARCA2 NM_003070 exon25 c.3457-2A>T . CCAAACAGGATCT . 321.0 106.0 318.0 0.0 . 313 . . Atlas-SNP PTPRD 5789 hgsc.bcm.edu hg19 9 8527349 8527349 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPRD NM_130392 exon5 c.T546C p.S182S ACCAATAGATTCT . 807.0 38.0 791.0 0.0 . 1348 . . Atlas-SNP CCDC171 203238 hgsc.bcm.edu hg19 9 15744565 15744565 + Nonsense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_173550 exon17 c.A2344T p.K782X GAGGAAAAGAAGC . 198.0 60.0 188.0 0.0 . . . . Atlas-SNP RASEF 158158 hgsc.bcm.edu hg19 9 85615446 85615446 + Missense_Mutation SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RASEF NM_152573 exon11 c.G1477T p.D493Y CCACATCTTCTAA . 92.0 26.0 115.0 0.0 . 69 . . Atlas-SNP KCNT1 57582 hgsc.bcm.edu hg19 9 138646978 138646978 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KCNT1 NM_020822 exon6 c.T503C p.L168P CTATTCTGTGGGT . 42.0 12.0 63.0 0.0 . 139 . . Atlas-SNP MCM10 55388 hgsc.bcm.edu hg19 10 13243528 13243528 + Nonsense_Mutation SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 MCM10_ENST00000361282,lower_third,carcinoma,0,1 MCM10 NM_182751 exon17 c.C2349A p.C783X GACATGCAAGACG . 67.0 15.0 70.0 0.0 . 76 . . Atlas-SNP COMMD3-BMI1 0 hgsc.bcm.edu hg19 10 22605412 22605412 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_001204062 exon1 c.C66T p.S22S CGACTCCAACGCC . 116.0 30.0 100.0 0.0 . . . . Atlas-SNP ZEB1 6935 hgsc.bcm.edu hg19 10 31816120 31816120 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZEB1 NM_001174096 exon9 c.A3306T p.Q1102H AAGTCAAGCAAGC . 66.0 17.0 53.0 0.0 . 173 . . Atlas-SNP ZNF365 22891 hgsc.bcm.edu hg19 10 64148324 64148324 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF365 NM_014951 exon3 c.A913T p.S305C GATCTCAGCGGGC . 59.0 12.0 42.0 0.0 . 174 . . Atlas-SNP TET1 80312 hgsc.bcm.edu hg19 10 70446431 70446431 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TET1 NM_030625 exon11 c.A5371T p.N1791Y ACAACAAACAACA . 143.0 49.0 124.0 0.0 . 255 . . Atlas-SNP PRF1 5551 hgsc.bcm.edu hg19 10 72358753 72358753 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PRF1 NM_001083116 exon3 c.T724A p.C242S GCTCGCAGGTGCG . 83.0 22.0 110.0 0.0 . 64 . . Atlas-SNP IFIT3 3437 hgsc.bcm.edu hg19 10 91099326 91099326 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . IFIT3 NM_001549 exon2 c.A914T p.E305V ATAAAGAGATGAT . 111.0 31.0 116.0 0.0 . 36 . . Atlas-SNP OPALIN 93377 hgsc.bcm.edu hg19 10 98111161 98111161 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OPALIN NM_033207 exon3 c.T46A p.S16T CAGGAGAGGACGT . 677.0 210.0 606.0 0.0 . 31 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98741566 98741566 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . C10orf12 NM_015652 exon1 c.A419T p.K140M CCATCAAGACAGC . 148.0 37.0 124.0 0.0 . 94 . . Atlas-SNP ZDHHC16 84287 hgsc.bcm.edu hg19 10 99213301 99213301 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZDHHC16 NM_198046 exon7 c.T571A p.C191S AACAATTGTGTGG . 73.0 30.0 69.0 0.0 . 25 . . Atlas-SNP SEC31B 25956 hgsc.bcm.edu hg19 10 102250575 102250575 + Silent SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SEC31B NM_015490 exon20 c.A2538T p.A846A GGAAGGTGCCAAG . 72.0 28.0 81.0 0.0 . 84 . . Atlas-SNP GBF1 8729 hgsc.bcm.edu hg19 10 104018779 104018779 + Silent SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GBF1 NM_001199378 exon2 c.C84A p.T28T GAGCACCCATACA . 138.0 36.0 158.0 0.0 . 142 . . Atlas-SNP OR56A5 390084 hgsc.bcm.edu hg19 11 5989217 5989217 + Silent SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_001146033 exon1 c.A508C p.R170R AGTATCTGAGTCG . 73.0 21.0 79.0 0.0 . . . . Atlas-SNP TRIM66 9866 hgsc.bcm.edu hg19 11 8662353 8662353 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TRIM66 NM_014818 exon9 c.T1134C p.H378H TGGTGGATGAGGG . 73.0 16.0 65.0 0.0 . 45 . . Atlas-SNP CD44 960 hgsc.bcm.edu hg19 11 35219675 35219675 + Silent SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CD44 NM_000610 exon7 c.T804A p.S268S TACGTCTTCAAAT . 120.0 34.0 115.0 0.0 . 48 . . Atlas-SNP NUP160 23279 hgsc.bcm.edu hg19 11 47823484 47823484 + Splice_Site SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NUP160 NM_015231 exon24 c.2776-2A>G . AGAGCCTGGAGAA . 107.0 36.0 101.0 0.0 . 116 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62290643 62290643 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . AHNAK NM_001620 exon5 c.A11246T p.D3749V TCAATGTCAGGCA . 76.0 18.0 104.0 0.0 . 532 . . Atlas-SNP MAP4K2 5871 hgsc.bcm.edu hg19 11 64563810 64563810 + Silent SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MAP4K2 NM_004579 exon24 c.G1686T p.R562R TAGCCTCCGCTGC . 101.0 25.0 105.0 0.0 . 83 . . Atlas-SNP EHBP1L1 254102 hgsc.bcm.edu hg19 11 65349553 65349553 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . EHBP1L1 NM_001099409 exon9 c.C1410T p.T470T CAGGACCAGGGAT . 155.0 37.0 133.0 0.0 . 64 . . Atlas-SNP SPTBN2 6712 hgsc.bcm.edu hg19 11 66466555 66466555 + Splice_Site SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SPTBN2 NM_006946 exon19 c.3777-2A>T . TGTGCCTGGAACG . 96.0 28.0 107.0 0.0 . 188 . . Atlas-SNP FGF19 9965 hgsc.bcm.edu hg19 11 69518447 69518447 + Silent SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FGF19 NM_005117 exon1 c.C198A p.G66G CACGACGCCGTCG . 29.0 14.0 45.0 0.0 . 11 . . Atlas-SNP PAK1 5058 hgsc.bcm.edu hg19 11 77070041 77070041 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PAK1 NM_001128620 exon6 c.A499T p.T167S CAGGAGTCTCAGA . 49.0 10.0 58.0 0.0 . 89 . . Atlas-SNP PAK1 5058 hgsc.bcm.edu hg19 11 77070043 77070043 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PAK1 NM_001128620 exon6 c.A497T p.E166V GGAGTCTCAGACA . 46.0 10.0 58.0 0.0 . 89 . . Atlas-SNP FAT3 120114 hgsc.bcm.edu hg19 11 92600067 92600067 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FAT3 NM_001008781 exon21 c.G11819A p.R3940Q TGGAGCGGCGCCG . 62.0 22.0 72.0 0.0 . 1822 . . Atlas-SNP MMP20 9313 hgsc.bcm.edu hg19 11 102495988 102495988 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MMP20 NM_004771 exon1 c.T63C p.T21T GGCTGCAGTGGAA . 75.0 24.0 104.0 0.0 . 52 . . Atlas-SNP LAYN 143903 hgsc.bcm.edu hg19 11 111430883 111430883 + Missense_Mutation SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . LAYN NM_001258390 exon8 c.G849T p.Q283H TCACCAGGGAAAC . 146.0 42.0 163.0 0.0 . 35 . . Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1137264 1137264 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ERC1 NM_178039 exon2 c.C195T p.A65A TGCTGCCTATGCC . 82.0 26.0 70.0 0.0 . 95 . . Atlas-SNP DBX2 440097 hgsc.bcm.edu hg19 12 45417596 45417596 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DBX2 NM_001004329 exon3 c.C581T p.S194F TCCTCAGAAAAGA . 70.0 18.0 80.0 0.0 . 45 . . Atlas-SNP TENC1 23371 hgsc.bcm.edu hg19 12 53454679 53454679 + Missense_Mutation SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TENC1 NM_015319 exon20 c.G3019T p.D1007Y CACTCAGATGGCG . 105.0 29.0 89.0 0.0 . 148 . . Atlas-SNP SPRYD3 84926 hgsc.bcm.edu hg19 12 53460128 53460128 + Silent SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SPRYD3 NM_032840 exon10 c.A1164T p.I388I CGGCTCTATCTCT . 94.0 28.0 82.0 0.0 . 29 . . Atlas-SNP RARG 5916 hgsc.bcm.edu hg19 12 53608001 53608001 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 RARG,colon,carcinoma,0,1 RARG NM_000966 exon7 c.C655T p.R219C GCACGCGGTGGTC . 83.0 17.0 93.0 0.0 . 53 . . Atlas-SNP CALCOCO1 57658 hgsc.bcm.edu hg19 12 54105826 54105826 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CALCOCO1 NM_020898 exon15 c.A1978T p.K660X GCTCCTTACAGAT . 160.0 45.0 170.0 0.0 . 50 . . Atlas-SNP LRP1 4035 hgsc.bcm.edu hg19 12 57589063 57589063 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . LRP1 NM_002332 exon52 c.C8318T p.T2773M GCAAGACGTGCGG . 51.0 15.0 53.0 0.0 . 428 . . Atlas-SNP NOS1 4842 hgsc.bcm.edu hg19 12 117657990 117657990 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NOS1 NM_001204218 exon28 c.T4162A p.C1388S CCCCACAGACGTA . 42.0 16.0 50.0 0.0 . 240 . . Atlas-SNP SACS 26278 hgsc.bcm.edu hg19 13 23929324 23929324 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SACS NM_014363 exon8 c.G1427A p.S476N TTTATGCTCCTGC . 53.0 17.0 64.0 0.0 . 871 . . Atlas-SNP PDS5B 23047 hgsc.bcm.edu hg19 13 33333788 33333788 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PDS5B NM_015032 exon29 c.A3332G p.Y1111C AAAATTATCTGCC . 103.0 28.0 102.0 0.0 . 141 . . Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77672195 77672195 + Nonsense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MYCBP2 NM_015057 exon56 c.A9094T p.R3032X CAGCTCTGGCACA . 115.0 30.0 64.0 0.0 . 1029 . . Atlas-SNP DAOA 267012 hgsc.bcm.edu hg19 13 106119492 106119492 + Splice_Site SNP T T C rs148297571 bycluster;by1000genomes;alternate_allele TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DAOA NM_172370 exon2 c.133+2T>C . TATTGGTATGTTA . 78.0 10.0 62.0 0.0 . 26 . T|0.994;A|0.006 Atlas-SNP FANCM 57697 hgsc.bcm.edu hg19 14 45645056 45645056 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FANCM NM_020937 exon14 c.A3099G p.K1033K TGATAAATGCACC . 151.0 48.0 156.0 0.0 . 225 . . Atlas-SNP COQ6 51004 hgsc.bcm.edu hg19 14 74417192 74417192 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COQ6 NM_182476 exon1 c.G157A p.A53T GCCTGTGCCTTGG . 95.0 26.0 79.0 0.0 . 27 . . Atlas-SNP PROX2 283571 hgsc.bcm.edu hg19 14 75329266 75329266 + Silent SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PROX2 NM_001243007 exon1 c.T1272A p.A424A CATGACAGCATGC . 61.0 20.0 49.0 0.0 . 44 . . Atlas-SNP RPS6KA5 9252 hgsc.bcm.edu hg19 14 91340125 91340125 + Missense_Mutation SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RPS6KA5 NM_004755 exon16 c.G2011T p.D671Y TTGGATCTACTGT . 59.0 15.0 38.0 0.0 . 135 . . Atlas-SNP DICER1 23405 hgsc.bcm.edu hg19 14 95590842 95590842 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DICER1 NM_030621 exon9 c.A1067T p.H356L AGTGCATGTATTT . 145.0 42.0 146.0 0.0 . 181 . . Atlas-SNP TECPR2 9895 hgsc.bcm.edu hg19 14 102898383 102898383 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TECPR2 NM_001172631 exon8 c.C1335T p.N445N ATTCAACGCCATC . 80.0 21.0 93.0 0.0 . 114 . . Atlas-SNP NPAP1 23742 hgsc.bcm.edu hg19 15 24921184 24921184 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 C15orf2,caecum,carcinoma,0,2 . NM_018958 exon1 c.G170A p.R57H CCCGTCGCAGGCC . 134.0 39.0 136.0 0.0 . . . . Atlas-SNP C15orf55 256646 hgsc.bcm.edu hg19 15 34646775 34646775 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . C15orf55 NM_175741 exon5 c.A1120T p.I374F GTTGACATCATGG . 179.0 58.0 146.0 0.0 . 110 . . Atlas-SNP LTK 4058 hgsc.bcm.edu hg19 15 41804112 41804112 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . LTK NM_001135685 exon5 c.A560T p.E187V TGCTCTTCAACGG . 81.0 24.0 76.0 0.0 . 117 . . Atlas-SNP DUOX1 53905 hgsc.bcm.edu hg19 15 45426494 45426494 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DUOX1 NM_017434 exon5 c.G294A p.L98L AGTGTTGGGGGTC . 136.0 48.0 139.0 0.0 . 125 . . Atlas-SNP SHF 90525 hgsc.bcm.edu hg19 15 45464477 45464477 + Missense_Mutation SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SHF NM_138356 exon6 c.G833C p.G278A TCCCGGCCAGGTG . 53.0 17.0 60.0 0.0 . 27 . . Atlas-SNP TLN2 83660 hgsc.bcm.edu hg19 15 63089561 63089561 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TLN2 NM_015059 exon45 c.T6194A p.L2065Q TCAAGCTGGGGGC . 124.0 39.0 108.0 0.0 . 253 . . Atlas-SNP PIF1 80119 hgsc.bcm.edu hg19 15 65113605 65113605 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PIF1 NM_025049 exon5 c.T932A p.V311E GCCTCCACCATTG . 171.0 40.0 195.0 0.0 . 43 . . Atlas-SNP CSPG4 1464 hgsc.bcm.edu hg19 15 75968374 75968374 + Silent SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CSPG4 NM_001897 exon10 c.T6486G p.T2162T AGGCTCAGTGGCA . 27.0 9.0 18.0 0.0 . 175 . . Atlas-SNP ABHD2 11057 hgsc.bcm.edu hg19 15 89659582 89659582 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ABHD2 NM_007011 exon7 c.C24T p.P8P GACTCCCGAACTC . 109.0 25.0 93.0 0.0 . 55 . . Atlas-SNP CASKIN1 57524 hgsc.bcm.edu hg19 16 2235014 2235014 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CASKIN1 NM_020764 exon13 c.A1262T p.Q421L GACTTCTGGGAAA . 113.0 52.0 94.0 0.0 . 130 . . Atlas-SNP NOMO3 408050 hgsc.bcm.edu hg19 16 16356983 16356983 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NOMO3 NM_001004067 exon13 c.C1448T p.T483I CCCAGACATTTCC . 159.0 65.0 137.0 0.0 . 23 . . Atlas-SNP PRKCB 5579 hgsc.bcm.edu hg19 16 24105573 24105573 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PRKCB NM_212535 exon7 c.T776C p.L259S GATCTTTGTCCTT . 201.0 92.0 159.0 0.0 . 383 . . Atlas-SNP ITGAM 3684 hgsc.bcm.edu hg19 16 31336309 31336309 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ITGAM NM_001145808 exon19 c.A2323T p.N775Y AATGACAACATCT . 70.0 28.0 46.0 0.0 . 137 . . Atlas-SNP NOD2 64127 hgsc.bcm.edu hg19 16 50746089 50746089 + Missense_Mutation SNP G G T rs375713299 alternate_allele TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 NOD2,caecum,carcinoma,0,1 NOD2 NM_022162 exon4 c.G2267T p.R756L TGGCTCGGAAGGC . 98.0 20.0 57.0 0.0 . 118 . . Atlas-SNP SALL1 6299 hgsc.bcm.edu hg19 16 51175130 51175130 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SALL1 NM_002968 exon2 c.A1003T p.S335C AGCCGCTGTTGGA . 82.0 27.0 59.0 0.0 . 301 . . Atlas-SNP BBS2 583 hgsc.bcm.edu hg19 16 56545111 56545111 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . BBS2 NM_031885 exon3 c.T431A p.L144Q CCTTGCAGAGCAC . 77.0 37.0 51.0 0.0 . 67 . . Atlas-SNP KATNB1 10300 hgsc.bcm.edu hg19 16 57785926 57785926 + Missense_Mutation SNP T T G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KATNB1 NM_005886 exon8 c.T591G p.F197L CGAGTTTCACCCC . 105.0 46.0 69.0 0.0 . 35 . . Atlas-SNP ZC3H18 124245 hgsc.bcm.edu hg19 16 88643896 88643896 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZC3H18 NM_144604 exon2 c.A365T p.E122V CCAGGGAGCTGGA . 82.0 21.0 58.0 0.0 . 90 . . Atlas-SNP SMYD4 114826 hgsc.bcm.edu hg19 17 1703349 1703349 + Missense_Mutation SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SMYD4 NM_052928 exon5 c.G1339T p.V447F CAGAAACACAGAG . 80.0 25.0 95.0 0.0 . 50 . . Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7681450 7681450 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . DNAH2 NM_020877 exon33 c.A5303T p.E1768V ATTATGAGTACTT . 80.0 18.0 72.0 0.0 . 498 . . Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10314242 10314242 + Missense_Mutation SNP C C A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MYH8 NM_002472 exon15 c.G1439T p.C480F TTGATGCACAGCT . 112.0 31.0 96.0 0.0 . 346 . . Atlas-SNP GPR179 440435 hgsc.bcm.edu hg19 17 36485868 36485868 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GPR179 NM_001004334 exon11 c.C3584T p.A1195V TTACCTGCTCTCT . 95.0 29.0 93.0 0.0 . 170 . . Atlas-SNP MED24 9862 hgsc.bcm.edu hg19 17 38183205 38183205 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MED24 NM_014815 exon17 c.A1613T p.K538M AGGATCTTGCCCT . 138.0 43.0 124.0 0.0 . 89 . . Atlas-SNP TOP2A 7153 hgsc.bcm.edu hg19 17 38557137 38557137 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TOP2A NM_001067 exon21 c.A2629T p.R877W AACGCCTGATGTT . 96.0 16.0 109.0 0.0 . 124 . . Atlas-SNP STAT3 6774 hgsc.bcm.edu hg19 17 40474482 40474482 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 STAT3,NS,lymphoid_neoplasm,0,46 STAT3 NM_003150 exon21 c.A1919T p.Y640F TTTGTGTATGGTT . 134.0 37.0 136.0 0.0 . 268 . . Atlas-SNP COL1A1 1277 hgsc.bcm.edu hg19 17 48276663 48276663 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COL1A1 NM_000088 exon5 c.A395T p.D132V ATGCCATCTCGGC . 178.0 34.0 174.0 0.0 . 158 . . Atlas-SNP TEX2 55852 hgsc.bcm.edu hg19 17 62290645 62290645 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TEX2 NM_018469 exon2 c.A933T p.E311D ACTTTCTTCCCCT . 75.0 14.0 73.0 0.0 . 89 . . Atlas-SNP ABCA9 10350 hgsc.bcm.edu hg19 17 66988376 66988376 + Missense_Mutation SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ABCA9 NM_080283 exon28 c.T3656G p.I1219S CGCAGAATGAAAA . 217.0 53.0 190.0 0.0 . 192 . . Atlas-SNP COG1 9382 hgsc.bcm.edu hg19 17 71197661 71197661 + Silent SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COG1 NM_018714 exon7 c.C1695G p.T565T GGGGACCGTGCAG . 81.0 25.0 80.0 0.0 . 46 . . Atlas-SNP C17orf99 100141515 hgsc.bcm.edu hg19 17 76160372 76160372 + Silent SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_001163075 exon4 c.A567G p.T189T CCAGACATCGGAC . 166.0 48.0 176.0 0.0 . . . . Atlas-SNP MYOM1 8736 hgsc.bcm.edu hg19 18 3215130 3215130 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 MYOM1,NS,carcinoma,0,1 MYOM1 NM_003803 exon2 c.G92A p.R31Q TTCTCCCGCTGGT . 74.0 25.0 80.0 0.0 . 192 . . Atlas-SNP PTPRM 5797 hgsc.bcm.edu hg19 18 7926575 7926575 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPRM NM_001105244 exon5 c.C557T p.P186L GGACTCCTCACTT . 64.0 16.0 74.0 0.0 . 185 . . Atlas-SNP ANKRD30B 374860 hgsc.bcm.edu hg19 18 14842894 14842894 + Splice_Site SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ANKRD30B NM_001145029 exon32 c.2723-2A>G . CTTTTTAGAGTCT . 482.0 85.0 454.0 0.0 . 237 . . Atlas-SNP GATA6 2627 hgsc.bcm.edu hg19 18 19751506 19751506 + Missense_Mutation SNP C C G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . GATA6 NM_005257 exon2 c.C401G p.A134G GCGGCGCCAAGCT . 1043.0 281.0 1248.0 0.0 . 35 . . Atlas-SNP PIAS2 9063 hgsc.bcm.edu hg19 18 44400939 44400939 + Silent SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PIAS2 NM_173206 exon12 c.A1605G p.P535P GTGGAATGGTACT . 115.0 31.0 146.0 0.0 . 85 . . Atlas-SNP S1PR4 8698 hgsc.bcm.edu hg19 19 3179175 3179175 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . S1PR4 NM_003775 exon1 c.C385T p.L129L ACCGCCCTGGCCG . 157.0 29.0 125.0 0.0 . 31 . . Atlas-SNP PTPRS 5802 hgsc.bcm.edu hg19 19 5244417 5244417 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PTPRS NM_002850 exon11 c.C1065T p.G355G TGGGTTGCCCGAG . 131.0 54.0 113.0 0.0 . 169 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9068492 9068492 + Silent SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . MUC16 NM_024690 exon3 c.T18954A p.T6318T TGAGACAGTAAAA . 134.0 53.0 88.0 0.0 . 4315 . . Atlas-SNP OR1M1 125963 hgsc.bcm.edu hg19 19 9204033 9204033 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . OR1M1 NM_001004456 exon1 c.T113A p.M38K TGGTCATGGTCGT . 94.0 15.0 73.0 0.0 . 52 . . Atlas-SNP PODNL1 79883 hgsc.bcm.edu hg19 19 14047181 14047181 + Silent SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . PODNL1 NM_024825 exon3 c.A339G p.E113E CTCACCTTCGGAG . 71.0 23.0 66.0 0.0 . 27 . . Atlas-SNP JAK3 3718 hgsc.bcm.edu hg19 19 17954263 17954263 + Missense_Mutation SNP G G T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . JAK3 NM_000215 exon4 c.C346A p.H116N AGCGGTGGCACTT . 227.0 49.0 170.0 0.0 . 341 . . Atlas-SNP KIRREL2 84063 hgsc.bcm.edu hg19 19 36351548 36351548 + Missense_Mutation SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KIRREL2 NM_199180 exon7 c.A907C p.S303R AACCGCAGTACTG . 71.0 31.0 61.0 0.0 . 170 . . Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41025770 41025770 + Silent SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SPTBN4 NM_020971 exon16 c.A3366T p.L1122L CAGCCTAGAAGAG . 38.0 9.0 28.0 0.0 . 213 . . Atlas-SNP HNRNPUL1 11100 hgsc.bcm.edu hg19 19 41808816 41808816 + Missense_Mutation SNP G G A rs147281768 TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . HNRNPUL1 NM_007040 exon12 c.G1934A p.R645Q AGAACCGAGGGGG . 247.0 44.0 185.0 0.0 . 73 . G|1.000;A|0.000 Atlas-SNP IRGQ 126298 hgsc.bcm.edu hg19 19 44096203 44096203 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . IRGQ NM_001007561 exon3 c.T1847A p.L616Q GGTGCCAGCACAG . 166.0 34.0 116.0 0.0 . 40 . . Atlas-SNP TPRX1 284355 hgsc.bcm.edu hg19 19 48305829 48305829 + Missense_Mutation SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TPRX1 NM_198479 exon2 c.G439A p.G147S ATGGGCCTGGGAT . 198.0 36.0 146.0 0.0 . 46 . . Atlas-SNP ZNF615 284370 hgsc.bcm.edu hg19 19 52496688 52496688 + Silent SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF615 NM_001199324 exon7 c.A1674G p.K558K GAAGCCTTTTCCA . 97.0 4.0 80.0 0.0 . 111 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53050791 53050791 + Silent SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF808 NM_001039886 exon4 c.T90C p.A30A TGTGGCTATAGAA . 118.0 22.0 83.0 0.0 . 81 . . Atlas-SNP VN1R2 317701 hgsc.bcm.edu hg19 19 53762581 53762581 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . VN1R2 NM_173856 exon1 c.T953A p.L318H GCATCCTTGCATT . 133.0 51.0 161.0 0.0 . 71 . . Atlas-SNP SIRPB1 10326 hgsc.bcm.edu hg19 20 1551730 1551730 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SIRPB1 NM_006065 exon4 c.A805G p.N269D TGACGTTTGCCTG . 195.0 80.0 146.0 0.0 . 83 . . Atlas-SNP CEP250 11190 hgsc.bcm.edu hg19 20 34092199 34092199 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CEP250 NM_007186 exon30 c.T6002A p.L2001Q CAACCCTGCAAGC . 89.0 39.0 77.0 0.0 . 141 . . Atlas-SNP TTI1 9675 hgsc.bcm.edu hg19 20 36642114 36642114 + Silent SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TTI1 NM_014657 exon3 c.A105T p.T35T TAGTCGTGTCTGC . 117.0 57.0 85.0 0.0 . 104 . . Atlas-SNP SYS1 90196 hgsc.bcm.edu hg19 20 43995718 43995718 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SYS1 NM_001197129 exon5 c.A434T p.E145V TCAAGGAGATACC . 136.0 52.0 117.0 0.0 . 15 . . Atlas-SNP SLC12A5 57468 hgsc.bcm.edu hg19 20 44665420 44665420 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SLC12A5 NM_001134771 exon5 c.A536G p.N179S CAACGAATGGTGT . 143.0 22.0 96.0 0.0 . 181 . . Atlas-SNP SYCP2 10388 hgsc.bcm.edu hg19 20 58441392 58441392 + Nonsense_Mutation SNP C C A rs377589640 alternate_allele TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 SYCP2,NS,carcinoma,0,1 SYCP2 NM_014258 exon40 c.G4276T p.E1426X CTTTTTCAAAATT . 464.0 96.0 310.0 1.0 . 204 . . Atlas-SNP ZNF512B 57473 hgsc.bcm.edu hg19 20 62595237 62595237 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZNF512B NM_020713 exon9 c.A1510G p.I504V CATGGATGGCCCT . 54.0 13.0 40.0 0.0 . 72 . . Atlas-SNP TPTE 7179 hgsc.bcm.edu hg19 21 10921957 10921957 + Missense_Mutation SNP A A G novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TPTE NM_199261 exon18 c.T1066C p.S356P TTTCAGAGGCAAT . 577.0 63.0 570.0 0.0 . 513 . . Atlas-SNP KRTAP13-4 284827 hgsc.bcm.edu hg19 21 31802679 31802679 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KRTAP13-4 NM_181600 exon1 c.T86A p.L29Q GCAGCCTGGTCTA . 118.0 40.0 114.0 0.0 . 46 . . Atlas-SNP TMPRSS2 7113 hgsc.bcm.edu hg19 21 42845270 42845270 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . TMPRSS2 NM_001135099 exon9 c.C992T p.A331V TGGGCGGCTGTCA . 115.0 36.0 108.0 0.0 . 148 . . Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47535813 47535813 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COL6A2 NM_058175 exon6 c.G829A p.G277R GAGCCGGGAGAGC . 79.0 20.0 68.0 0.0 . 351 . . Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24807640 24807640 + Missense_Mutation SNP A A T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SPECC1L NM_001145468 exon14 c.A3172T p.I1058F GCCCACATTCCAT . 60.0 19.0 66.0 0.0 . 85 . . Atlas-SNP ADRBK2 157 hgsc.bcm.edu hg19 22 26083502 26083502 + Splice_Site SNP A A C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ADRBK2 NM_005160 exon11 c.827-2A>C . GATTCCAGGGGGC . 75.0 22.0 68.0 0.0 . 78 . . Atlas-SNP RPGR 6103 hgsc.bcm.edu hg19 X 38182690 38182690 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . RPGR NM_001034853 exon2 c.A116G p.H39R GAAAGATGTACAG . 551.0 245.0 769.0 0.0 . 175 . . Atlas-SNP KCND1 3750 hgsc.bcm.edu hg19 X 48826085 48826085 + Silent SNP C C T novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KCND1 NM_004979 exon1 c.G594A p.V198V GACCGACACGGCG . 107.0 41.0 127.0 0.0 . 63 . . Atlas-SNP ARHGEF9 23229 hgsc.bcm.edu hg19 X 62926291 62926291 + Silent SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ARHGEF9 NM_015185 exon3 c.C228T p.P76P ATCGCTGGGCCCC . 39.0 14.0 65.0 0.0 . 117 . . Atlas-SNP AWAT2 158835 hgsc.bcm.edu hg19 X 69269752 69269752 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . AWAT2 NM_001002254 exon1 c.A31T p.T11S GGGCAGTCTTGAG . 358.0 130.0 405.0 0.0 . 36 . . Atlas-SNP ZMAT1 84460 hgsc.bcm.edu hg19 X 101139286 101139286 + Silent SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ZMAT1 NM_001011657 exon7 c.A1113T p.S371S CACTGGTGAAATA . 145.0 52.0 176.0 0.0 . 143 . . Atlas-SNP COL4A5 1287 hgsc.bcm.edu hg19 X 107867495 107867495 + Missense_Mutation SNP T T A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . COL4A5 NM_000495 exon34 c.T2947A p.Y983N AAAGGTTATCAGG . 110.0 34.0 156.0 0.0 . 262 . . Atlas-SNP AIFM1 9131 hgsc.bcm.edu hg19 X 129289157 129289157 + Missense_Mutation SNP T T C novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . AIFM1 NM_145812 exon2 c.A211G p.T71A TGACTGTTGCTCC . 268.0 13.0 317.0 0.0 . 75 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13177 13177 + Missense_Mutation SNP G G A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . ENST00000361567 exon1 c.G841A p.G281S TGCTTAGGCGCTA . 50.0 47.0 10.0 0.0 . . . . Atlas-SNP SYTL3 94120 hgsc.bcm.edu hg19 6 159139125 159139125 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . SYTL3 NM_001242384 exon11 c.601delT p.S201fs . . 89.0 19.0 62.0 0.0 . 49 . . Atlas-INDEL BTAF1 9044 hgsc.bcm.edu hg19 10 93699802 93699802 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . BTAF1 NM_003972 exon3 c.231delT p.N77fs . . 202.0 57.0 162.0 0.0 . 148 . . Atlas-INDEL FFAR4 338557 hgsc.bcm.edu hg19 10 95338925 95338931 + Frame_Shift_Del DEL CACCTCC CACCTCC - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 CACCTCC CACCTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . . NM_181745 exon3 c.705_711del p.235_237del . . 79.0 16.0 76.0 0.0 . . . . Atlas-INDEL KIAA2018 205717 hgsc.bcm.edu hg19 3 113379342 113379342 + Frame_Shift_Del DEL T T - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KIAA2018 NM_001009899 exon7 c.1188delT p.N396fs . . 61.0 19.0 55.0 0.0 . 180 . . Atlas-INDEL CC2D2A 57545 hgsc.bcm.edu hg19 4 15529075 15529075 + Frame_Shift_Del DEL A A - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CC2D2A NM_001080522 exon13 c.1154delT p.V385fs . . 58.0 11.0 50.0 0.0 . 158 . . Atlas-INDEL ROBO1 6091 hgsc.bcm.edu hg19 3 78649366 78649366 + Frame_Shift_Del DEL C C - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . ROBO1 NM_002941 exon30 c.4839delA p.G1613fs . . 228.0 56.0 188.0 0.0 . 833 . . Atlas-INDEL KRTAP4-5 85289 hgsc.bcm.edu hg19 17 39305778 39305779 + In_Frame_Ins INS - - AGCAGCTGGGGCGGC novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . KRTAP4-5 NM_033188 exon1 c.242_243insGCCGCCCCAGCTGCT p.C81delinsCRPSCC . . 61.0 37.0 45.0 0.0 . 34 . . Atlas-INDEL CENPF 1063 hgsc.bcm.edu hg19 1 214815369 214815370 + Frame_Shift_Del DEL GA GA - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 GA GA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . CENPF NM_016343 exon12 c.3687_3688del p.1229_1230del . . 797.0 369.0 372.0 0.0 . 321 . . Atlas-INDEL NME6 10201 hgsc.bcm.edu hg19 3 48336594 48336595 + Frame_Shift_Del DEL GT GT - novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 GT GT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . NME6 NM_005793 exon5 c.389_390del p.130_130del . . 107.0 35.0 114.0 0.0 . 14 . . Atlas-INDEL FMO3 2328 hgsc.bcm.edu hg19 1 171061808 171061809 + Frame_Shift_Ins INS - - A novel TCGA-DD-AACT-01A-11D-A40R-10 TCGA-DD-AACT-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 9f7c9ce7-623f-4bd3-be0d-2c55d8e86fcf 52619546-0765-495f-b30e-c05fc98e8c92 . FMO3 NM_001002294 exon2 c.9_10insA p.K3fs . . 231.0 17.0 124.0 0.0 . 73 . . Atlas-INDEL