Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DNAJC16	23341	hgsc.bcm.edu	hg19	1	15888777	15888777	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DNAJC16	NM_015291	exon9	c.A1295T	p.D432V	TTGCCGACACCTT	.	96.0	13.0	90.0	0.0	.	59	.	.	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19166377	19166377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	TAS1R2,NS,carcinoma,0,1	TAS1R2	NM_152232	exon6	c.G2236A	p.A746T	TGTAGGCGAAGCT	.	153.0	30.0	133.0	0.0	.	134	.	.	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	hg19	1	45363027	45363027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	EIF2B3	NM_020365	exon6	c.G656A	p.G219E	TCTTACCCATTTT	.	38.0	6.0	46.0	0.0	.	43	.	.	Atlas-SNP
NHLH2	4808	hgsc.bcm.edu	hg19	1	116380822	116380822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	NHLH2	NM_001111061	exon2	c.C172T	p.P58S	GGTGCGGGTAGAG	.	38.0	7.0	55.0	0.0	.	8	.	.	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	hg19	1	154519928	154519928	+	Silent	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TDRD10	NM_182499	exon12	c.G996T	p.G332G	CAAAGGGAAAATC	.	128.0	27.0	115.0	0.0	.	48	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169505910	169505910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	F5	NM_000130	exon14	c.A4805G	p.D1602G	TCAATATCTGTTT	.	68.0	16.0	69.0	0.0	.	301	.	.	Atlas-SNP
DHX9	1660	hgsc.bcm.edu	hg19	1	182823255	182823255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DHX9	NM_001357	exon6	c.C568G	p.Q190E	TATTTTCAGAAAG	.	238.0	36.0	189.0	0.0	.	114	.	.	Atlas-SNP
C1orf115	79762	hgsc.bcm.edu	hg19	1	220870013	220870013	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	C1orf115,NS,carcinoma,0,1	C1orf115	NM_024709	exon2	c.C369T	p.F123F	AGGCTTCGCTGCA	.	138.0	40.0	95.0	0.0	.	6	.	.	Atlas-SNP
ADAM17	6868	hgsc.bcm.edu	hg19	2	9642319	9642319	+	Missense_Mutation	SNP	C	C	A	rs375981644	alternate_allele	TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ADAM17	NM_003183	exon13	c.G1631T	p.G544V	GACACGCCTTTGC	.	74.0	12.0	68.0	0.0	.	61	.	.	Atlas-SNP
APOB	338	hgsc.bcm.edu	hg19	2	21229941	21229941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	APOB	NM_000384	exon26	c.A9799C	p.M3267L	CCGACATCTCTAT	.	122.0	20.0	140.0	0.0	.	761	.	.	Atlas-SNP
STON1	11037	hgsc.bcm.edu	hg19	2	48809324	48809324	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	STON1	NM_001198595	exon3	c.A1552T	p.K518X	CGTTTCAAGACTT	.	108.0	17.0	146.0	0.0	.	100	.	.	Atlas-SNP
ZAP70	7535	hgsc.bcm.edu	hg19	2	98340506	98340506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ZAP70	NM_001079	exon3	c.G7T	p.D3Y	ATGCCAGACCCCG	.	54.0	10.0	66.0	0.0	.	77	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179447173	179447173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TTN	NM_001267550	exon314	c.G66010A	p.A22004T	CTTGAGCCCAGTT	.	174.0	41.0	150.0	0.0	.	18412	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185802852	185802852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ZNF804A	NM_194250	exon4	c.T2729G	p.V910G	CAGATGTTTCCAA	.	97.0	22.0	132.0	0.0	.	322	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198266709	198266709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	SF3B1,NS,carcinoma,0,3	SF3B1	NM_012433	exon15	c.G2223T	p.K741N	ATTTACCTTTCCT	.	252.0	48.0	250.0	0.0	.	1038	.	.	Atlas-SNP
AOX1	316	hgsc.bcm.edu	hg19	2	201457898	201457898	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	AOX1	NM_001159	exon2	c.A75G	p.T25T	TGAAACAATGCTG	.	95.0	16.0	65.0	0.0	.	152	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53845336	53845336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CACNA1D	NM_000720	exon49	c.T6449C	p.L2150P	ATGAGCTACAGGA	.	103.0	15.0	104.0	0.0	.	324	.	.	Atlas-SNP
FOXP1	27086	hgsc.bcm.edu	hg19	3	71021808	71021808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FOXP1	NM_001244815	exon13	c.T1556G	p.L519R	AGACTAAGATTAT	.	70.0	9.0	110.0	0.0	.	104	.	.	Atlas-SNP
FSTL5	56884	hgsc.bcm.edu	hg19	4	162577513	162577513	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FSTL5	NM_020116	exon7	c.T861C	p.I287I	TAGAATAATATTG	.	52.0	8.0	61.0	0.0	.	207	.	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5190154	5190154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ADAMTS16	NM_139056	exon7	c.T1118C	p.M373T	GATTGATGGGGAA	.	93.0	22.0	93.0	0.0	.	543	.	.	Atlas-SNP
ADAMTS16	170690	hgsc.bcm.edu	hg19	5	5190170	5190170	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ADAMTS16	NM_139056	exon7	c.T1134A	p.T378T	TGGGACTCGTCAT	.	95.0	23.0	85.0	0.0	.	543	.	.	Atlas-SNP
KIF2A	3796	hgsc.bcm.edu	hg19	5	61681317	61681317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	KIF2A	NM_001098511	exon21	c.T2156A	p.V719E	ATAAAGTGAAATC	.	113.0	28.0	84.0	0.0	.	69	.	.	Atlas-SNP
SPZ1	84654	hgsc.bcm.edu	hg19	5	79617277	79617277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	SPZ1	NM_032567	exon1	c.G1243A	p.A415T	CATGTTGCAAGAA	.	193.0	22.0	161.0	0.0	.	60	.	.	Atlas-SNP
FAM174A	345757	hgsc.bcm.edu	hg19	5	99871445	99871445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FAM174A	NM_198507	exon1	c.G211A	p.A71T	GGTCTGGCTGAAG	.	79.0	20.0	39.0	0.0	.	13	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110445992	110445992	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	WDR36	NM_139281	exon13	c.C1599T	p.G533G	TTTTGGCAAGGAT	.	105.0	28.0	97.0	0.0	.	111	.	.	Atlas-SNP
YTHDC2	64848	hgsc.bcm.edu	hg19	5	112899767	112899767	+	Missense_Mutation	SNP	G	G	T	rs199656628	bycluster;alternate_allele	TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	YTHDC2	NM_022828	exon20	c.G2654T	p.C885F	TGCTTTGTAGGAA	.	81.0	4.0	86.0	0.0	.	118	.	.	Atlas-SNP
IK	3550	hgsc.bcm.edu	hg19	5	140027509	140027509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	IK	NM_006083	exon1	c.A16T	p.S6C	CGAGATAGTAAGG	.	165.0	19.0	133.0	0.0	.	46	.	.	Atlas-SNP
PCDHA3	56145	hgsc.bcm.edu	hg19	5	140181355	140181355	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	PCDHA3	NM_031497	exon1	c.C573T	p.S191S	TAAATCCCTTGGA	.	159.0	35.0	118.0	0.0	.	396	.	.	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	hg19	5	140255556	140255556	+	Missense_Mutation	SNP	C	C	A	rs17844352	alternate_allele	TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	PCDHA12,right_upper_lobe,carcinoma,0,1	PCDHA12	NM_018903	exon1	c.C499A	p.L167I	AACTCTCTTTTGA	.	200.0	50.0	135.0	0.0	.	196	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56480793	56480793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DST	NM_001723	exon24	c.A7472C	p.D2491A	AGAGGATCAATTA	.	80.0	22.0	118.0	0.0	.	1427	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66200596	66200596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	EYS_ENST00000370621,NS,carcinoma,0,4	EYS	NM_001142801	exon5	c.G753C	p.K251N	GCAATTCTTTCCT	.	415.0	80.0	436.0	0.0	.	527	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146276072	146276072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	SHPRH	NM_173082	exon2	c.A387C	p.L129F	TTCAATTAAACTC	.	103.0	20.0	136.0	0.0	.	169	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152793449	152793449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	SYNE1	NM_033071	exon15	c.G1471T	p.D491Y	CCATGTCCTCTAA	.	105.0	20.0	105.0	0.0	.	3227	.	.	Atlas-SNP
C6orf118	168090	hgsc.bcm.edu	hg19	6	165715430	165715430	+	Silent	SNP	C	C	A	rs202048007	by1000genomes;alternate_allele	TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	C6orf118	NM_144980	exon2	c.G381T	p.P127P	GAACAGCGGGGTG	.	48.0	9.0	65.0	0.0	.	116	.	C|0.973;T|0.027	Atlas-SNP
EPDR1	54749	hgsc.bcm.edu	hg19	7	37960698	37960698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	EPDR1	NM_001242946	exon1	c.G157A	p.V53I	CGCCAGGTTATGT	.	42.0	9.0	52.0	0.0	.	48	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113363436	113363436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CSMD3	NM_198123	exon40	c.G6293T	p.R2098I	CATCTTCTTACAG	.	193.0	13.0	125.0	0.0	.	2325	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113697827	113697827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CSMD3	NM_198123	exon15	c.A2290G	p.N764D	AGTCATTGAAAGA	.	154.0	23.0	101.0	0.0	.	2325	.	.	Atlas-SNP
TG	7038	hgsc.bcm.edu	hg19	8	133941375	133941375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TG	NM_003235	exon23	c.C4754A	p.A1585D	CCAATGCTCCTGT	.	145.0	13.0	87.0	0.0	.	416	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144887556	144887556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	SCRIB	NM_015356	exon19	c.C2396T	p.A799V	CGGAGCGCCTCCA	.	55.0	9.0	30.0	0.0	.	192	.	.	Atlas-SNP
FOCAD	54914	hgsc.bcm.edu	hg19	9	20821034	20821034	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	.	NM_017794	exon16	c.C1757G	p.A586G	TGATTGCAAAAGC	.	74.0	15.0	67.0	0.0	.	.	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96061396	96061396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	WNK2	NM_006648	exon24	c.G5968A	p.A1990T	GACCCTGCCCAAG	.	69.0	14.0	88.0	0.0	.	277	.	.	Atlas-SNP
FBXW5	54461	hgsc.bcm.edu	hg19	9	139837919	139837919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FBXW5	NM_018998	exon3	c.A233G	p.D78G	ACCGTGTCATACA	.	83.0	15.0	89.0	0.0	.	36	.	.	Atlas-SNP
RASGEF1A	221002	hgsc.bcm.edu	hg19	10	43694571	43694571	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	RASGEF1A	NM_145313	exon8	c.C921T	p.I307I	GTTCCCGATGTTG	.	75.0	21.0	97.0	0.0	.	66	.	.	Atlas-SNP
OLFML1	283298	hgsc.bcm.edu	hg19	11	7530670	7530670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	OLFML1	NM_198474	exon3	c.G460T	p.V154L	AAAATAGTGAAGA	.	106.0	5.0	115.0	0.0	.	54	.	.	Atlas-SNP
RAG1	5896	hgsc.bcm.edu	hg19	11	36597181	36597181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	RAG1,NS,carcinoma,+1,1	RAG1	NM_000448	exon2	c.G2327T	p.R776L	AACTGCGGGATCG	.	59.0	5.0	77.0	0.0	.	151	.	.	Atlas-SNP
CD82	3732	hgsc.bcm.edu	hg19	11	44639862	44639862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CD82	NM_002231	exon8	c.G589A	p.G197S	GCCCCCGGCAACA	.	117.0	18.0	104.0	0.0	.	27	.	.	Atlas-SNP
TRIM29	23650	hgsc.bcm.edu	hg19	11	120008061	120008061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TRIM29	NM_012101	exon1	c.G679A	p.V227M	CATGCACGGGACA	.	60.0	15.0	34.0	0.0	.	78	.	.	Atlas-SNP
GRAMD1B	57476	hgsc.bcm.edu	hg19	11	123474148	123474148	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	GRAMD1B	NM_020716	exon8	c.G636A	p.K212K	TCCCAAGGAGCTC	.	107.0	22.0	105.0	0.0	.	122	.	.	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	hg19	11	124747876	124747876	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ROBO3	NM_022370	exon21	c.G3030A	p.T1010T	GGGCACGGCCGCC	.	793.0	167.0	855.0	1.0	.	199	.	.	Atlas-SNP
YAF2	10138	hgsc.bcm.edu	hg19	12	42555530	42555530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	YAF2	NM_001190979	exon4	c.G262A	p.V88I	GAGTAACCTGCTG	.	98.0	14.0	93.0	0.0	.	16	.	.	Atlas-SNP
RAPGEF3	10411	hgsc.bcm.edu	hg19	12	48137437	48137437	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	RAPGEF3	NM_001098531	exon18	c.A1701T	p.P567P	GTGGTCTGGCCGG	.	82.0	12.0	97.0	0.0	.	98	.	.	Atlas-SNP
MMP19	4327	hgsc.bcm.edu	hg19	12	56234593	56234593	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	MMP19,colon,carcinoma,-2,1	MMP19	NM_001272101	exon4	c.G378A	p.R126R	GGCTGCCCGGGCT	.	85.0	13.0	90.0	0.0	.	61	.	.	Atlas-SNP
FGD6	55785	hgsc.bcm.edu	hg19	12	95478307	95478307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FGD6	NM_018351	exon20	c.T4223G	p.V1408G	TTGAATACATAAA	.	73.0	15.0	75.0	0.0	.	127	.	.	Atlas-SNP
FGD6	55785	hgsc.bcm.edu	hg19	12	95478356	95478356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	FGD6	NM_018351	exon20	c.T4174G	p.S1392A	ACTCGGAATTCTC	.	85.0	16.0	77.0	0.0	.	127	.	.	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29933428	29933428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	MTUS2_ENST00000431530,NS,carcinoma,0,1	MTUS2	NM_001033602	exon6	c.C2965T	p.R989X	GCAGCTCGAAATG	.	175.0	41.0	184.0	0.0	.	279	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35883725	35883725	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	NBEA	NM_015678	exon36	c.G5899T	p.G1967X	AATGAAGGAAGGT	.	213.0	36.0	208.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35883726	35883726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	NBEA	NM_015678	exon36	c.G5900T	p.G1967V	ATGAAGGAAGGTA	.	211.0	34.0	205.0	0.0	.	340	.	.	Atlas-SNP
TPPP2	122664	hgsc.bcm.edu	hg19	14	21498863	21498863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TPPP2	NM_173846	exon2	c.T123A	p.D41E	CATGGATGGCAAG	.	99.0	11.0	94.0	0.0	.	22	.	.	Atlas-SNP
AKAP6	9472	hgsc.bcm.edu	hg19	14	33290961	33290961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	AKAP6	NM_004274	exon13	c.G3942T	p.M1314I	TGGCATGACACAG	.	62.0	11.0	72.0	0.0	.	308	.	.	Atlas-SNP
PDE8A	5151	hgsc.bcm.edu	hg19	15	85634389	85634389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	PDE8A	NM_002605	exon8	c.A829T	p.N277Y	ACTATAAATTCAT	.	151.0	24.0	157.0	0.0	.	50	.	.	Atlas-SNP
SLCO3A1	28232	hgsc.bcm.edu	hg19	15	92459637	92459637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	SLCO3A1	NM_013272	exon2	c.G595A	p.V199I	CTGGGCGTCTCCT	.	77.0	18.0	89.0	0.0	.	84	.	.	Atlas-SNP
HEATR3	55027	hgsc.bcm.edu	hg19	16	50117925	50117925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	HEATR3	NM_182922	exon8	c.G1119A	p.M373I	CAACATGTGCTGC	.	67.0	5.0	79.0	0.0	.	59	.	.	Atlas-SNP
DYNC1LI2	1783	hgsc.bcm.edu	hg19	16	66785466	66785466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DYNC1LI2	NM_006141	exon1	c.T29A	p.L10Q	AGCAGCAGCTTCT	.	61.0	8.0	88.0	0.0	.	37	.	.	Atlas-SNP
RFWD3	55159	hgsc.bcm.edu	hg19	16	74678544	74678544	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	RFWD3	NM_018124	exon5	c.G882A	p.W294X	ATTGGTCCACTGT	.	100.0	17.0	114.0	0.0	.	49	.	.	Atlas-SNP
MVD	4597	hgsc.bcm.edu	hg19	16	88722115	88722115	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	MVD	NM_002461	exon6	c.A627T	p.T209T	ACTGCCTGTCAGC	.	53.0	15.0	52.0	0.0	.	27	.	.	Atlas-SNP
DLG4	1742	hgsc.bcm.edu	hg19	17	7106632	7106632	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DLG4	NM_001365	exon9	c.C651T	p.I217I	CCCTGCGATGCTG	.	56.0	10.0	45.0	0.0	.	110	.	.	Atlas-SNP
KRTAP9-4	85280	hgsc.bcm.edu	hg19	17	39406008	39406008	+	Silent	SNP	A	A	C	rs79961737		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	KRTAP9-4,NS,carcinoma,0,1	KRTAP9-4	NM_033191	exon1	c.A36C	p.T12T	GCCTACATGCTGC	.	93.0	8.0	74.0	2.0	.	30	.	A|0.875;C|0.125	Atlas-SNP
CNP	1267	hgsc.bcm.edu	hg19	17	40120710	40120710	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CNP	NM_033133	exon2	c.C628G	p.L210V	GTCTTCCTGGAAG	.	115.0	27.0	139.0	0.0	.	58	.	.	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	hg19	18	56204804	56204804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ALPK2	NM_052947	exon5	c.C2615A	p.S872X	GACACTGAAGTCT	.	123.0	6.0	127.0	0.0	.	487	.	.	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	hg19	19	1432588	1432588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DAZAP1	NM_018959	exon11	c.C947T	p.P316L	CCACTCCCGGGGC	.	164.0	31.0	178.0	0.0	.	52	.	.	Atlas-SNP
KANK3	256949	hgsc.bcm.edu	hg19	19	8400165	8400165	+	Silent	SNP	T	T	C	rs201041593		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	KANK3	NM_198471	exon3	c.A546G	p.Q182Q	CTGCAGTTGGGCA	.	7.0	7.0	1.0	0.0	.	35	.	.	Atlas-SNP
ZNF560	147741	hgsc.bcm.edu	hg19	19	9578805	9578805	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ZNF560	NM_152476	exon10	c.C818G	p.S273C	CGGAAAGATTTTC	.	159.0	14.0	161.0	0.0	.	162	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14020667	14020667	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	CC2D1A	NM_017721	exon2	c.G92C	p.G31A	CAGATGGCCTGAT	.	99.0	14.0	98.0	0.0	.	67	.	.	Atlas-SNP
SNRPA	6626	hgsc.bcm.edu	hg19	19	41263356	41263356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	SNRPA,rectum,carcinoma,0,1	SNRPA	NM_004596	exon2	c.G193T	p.A65S	AGCAGCGCCACCA	.	68.0	3.0	90.0	0.0	.	20	.	.	Atlas-SNP
GRIN2D	2906	hgsc.bcm.edu	hg19	19	48918223	48918223	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	GRIN2D	NM_000836	exon6	c.C1515G	p.L505L	CGACCTCTACCTG	.	123.0	28.0	127.0	0.0	.	76	.	.	Atlas-SNP
LILRA6	79168	hgsc.bcm.edu	hg19	19	54746592	54746592	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	LILRA6	NM_024318	exon1	c.C9T	p.P3P	GAGGGCGGGCGTC	.	270.0	62.0	238.0	0.0	.	75	.	.	Atlas-SNP
PEG3	5178	hgsc.bcm.edu	hg19	19	57325481	57325481	+	Silent	SNP	G	G	C	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	ZIM2_ENST00000326441,NS,carcinoma,0,4	PEG3	NM_001146184	exon9	c.C4329G	p.A1443A	CTGCTCGGCCTCT	.	83.0	12.0	94.0	1.0	.	414	.	.	Atlas-SNP
TNRC6B	23112	hgsc.bcm.edu	hg19	22	40661255	40661255	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	TNRC6B	NM_001162501	exon5	c.C1021G	p.Q341E	GTAGGTCAGACAT	.	140.0	19.0	180.0	0.0	.	195	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32536160	32536160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	DMD	NM_004006	exon18	c.G2257T	p.E753X	TGCCTTCCTTCCG	.	317.0	123.0	268.0	0.0	.	2127	.	.	Atlas-SNP
PABPC5	140886	hgsc.bcm.edu	hg19	X	90690668	90690668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	PABPC5	NM_080832	exon2	c.A92G	p.E31G	TCACCGAGGACAT	.	66.0	7.0	76.0	0.0	.	92	.	.	Atlas-SNP
ND5	0	hgsc.bcm.edu	hg19	MT	12622	12622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	.	ENST00000361567	exon1	c.G286A	p.V96I	TTGTTCGTTACAT	.	32.0	10.0	25.0	0.0	.	.	.	.	Atlas-SNP
WISP3	8838	hgsc.bcm.edu	hg19	6	112390640	112390641	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	WISP3	NM_198239	exon5	c.935_936del	p.312_312del	.	.	98.0	15.0	103.0	0.0	.	33	.	.	Atlas-INDEL
ZNF502	91392	hgsc.bcm.edu	hg19	3	44762762	44762763	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-AAD2-01A-11D-A40R-10	TCGA-DD-AAD2-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8f5469f1-7000-4a1b-834a-30e00f219671	ea06211a-5794-45d9-88ea-02b46933a273	.	ZNF502	NM_001134442	exon3	c.453_454insA	p.Q151fs	.	.	260.0	42.0	278.0	0.0	.	58	.	.	Atlas-INDEL