Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm VPS13D 55187 hgsc.bcm.edu hg19 1 12336579 12336579 + Silent SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . VPS13D NM_015378 exon19 c.C2934T p.L978L TGTGCTCAAGGTG . 38.0 19.0 92.0 0.0 . 316 . . Atlas-SNP TMCO4 255104 hgsc.bcm.edu hg19 1 20009838 20009838 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TMCO4 NM_181719 exon16 c.G1600A p.A534T CTGGGGCCAGCAA . 93.0 48.0 192.0 0.0 . 46 . . Atlas-SNP ASB17 127247 hgsc.bcm.edu hg19 1 76397825 76397825 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ASB17 NM_080868 exon1 c.T152A p.L51Q TTTGCCAGTGATC . 110.0 43.0 170.0 0.0 . 53 . . Atlas-SNP ABCA4 24 hgsc.bcm.edu hg19 1 94548954 94548954 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ABCA4 NM_000350 exon7 c.G812T p.R271I CAAGATCTCAGAT . 49.0 11.0 70.0 0.0 . 275 . . Atlas-SNP PAPPA2 60676 hgsc.bcm.edu hg19 1 176762782 176762782 + Missense_Mutation SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PAPPA2 NM_020318 exon20 c.T5107C p.W1703R GAGCACTGGATGG . 146.0 27.0 117.0 0.0 . 665 . . Atlas-SNP COLGALT2 23127 hgsc.bcm.edu hg19 1 183942764 183942764 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . NM_015101 exon4 c.G613A p.G205R TGATTCCGCACCA . 112.0 7.0 81.0 0.0 . . . . Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186076063 186076063 + Silent SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . HMCN1 NM_031935 exon70 c.A10818T p.G3606G TGCAGGAGATGAT . 113.0 31.0 61.0 0.0 . 797 . . Atlas-SNP PLA2G4A 5321 hgsc.bcm.edu hg19 1 186880396 186880396 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PLA2G4A NM_024420 exon7 c.C433T p.R145X GACCTACGATTTA . 177.0 61.0 112.0 0.0 . 125 . . Atlas-SNP EXO1 9156 hgsc.bcm.edu hg19 1 242042426 242042426 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . EXO1 NM_130398 exon13 c.G1890A p.L630L AGCATTGCAGCAG . 205.0 15.0 160.0 0.0 . 103 . . Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37280689 37280689 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . HEATR5B NM_019024 exon17 c.G2461T p.A821S GCACAGCCTGCTG . 376.0 155.0 523.0 0.0 . 185 . . Atlas-SNP GYPC 2995 hgsc.bcm.edu hg19 2 127453545 127453545 + Missense_Mutation SNP G G A rs200879714 bycluster TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f GYPC,right_upper_lobe,carcinoma,0,1 GYPC NM_002101 exon4 c.G214A p.V72I GCCATCGTCCTAG . 68.0 7.0 85.0 0.0 . 27 . . Atlas-SNP DNAJB2 3300 hgsc.bcm.edu hg19 2 220147607 220147607 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . DNAJB2 NM_006736 exon6 c.C401T p.S134L GACACTCAGGCCC . 60.0 14.0 91.0 0.0 . 31 . . Atlas-SNP SLC4A3 6508 hgsc.bcm.edu hg19 2 220500183 220500183 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SLC4A3 NM_201574 exon13 c.T2018A p.M673K TCGAGATGACCAC . 288.0 74.0 365.0 0.0 . 144 . . Atlas-SNP RFTN1 23180 hgsc.bcm.edu hg19 3 16411777 16411777 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . RFTN1 NM_015150 exon6 c.T836C p.I279T GTGAAGATCTCCA . 100.0 14.0 158.0 0.0 . 79 . . Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42799704 42799704 + Missense_Mutation SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CCDC13 NM_144719 exon2 c.A134G p.D45G TGGTCGTCAGCTC . 104.0 24.0 125.0 0.0 . 71 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52437795 52437795 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . BAP1 NM_004656 exon13 c.C1366T p.Q456X CCTTCTGGGACTC . 41.0 19.0 42.0 0.0 . 371 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52441304 52441304 + Nonsense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f BAP1,NS,carcinoma,0,1 BAP1 NM_004656 exon7 c.C466T p.Q156X CATTCTGCTTCTC . 134.0 50.0 182.0 0.0 . 371 . . Atlas-SNP ROBO1 6091 hgsc.bcm.edu hg19 3 78701075 78701075 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ROBO1 NM_002941 exon19 c.C2619T p.A873A TCCATGGGCATCT . 103.0 35.0 113.0 0.0 . 833 . . Atlas-SNP OR5K1 26339 hgsc.bcm.edu hg19 3 98189208 98189208 + Missense_Mutation SNP A A C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . OR5K1 NM_001004736 exon1 c.A788C p.N263T GACCAAATTTGCT . 121.0 36.0 204.0 0.0 . 51 . . Atlas-SNP POLQ 10721 hgsc.bcm.edu hg19 3 121228964 121228964 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . POLQ NM_199420 exon11 c.G1738A p.G580R TCGCTCCAAGCTG . 78.0 25.0 138.0 0.0 . 273 . . Atlas-SNP WDR49 151790 hgsc.bcm.edu hg19 3 167293897 167293897 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . WDR49 NM_178824 exon4 c.A295T p.R99W CTATCCTCTGGAT . 95.0 14.0 152.0 0.0 . 188 . . Atlas-SNP TMEM41A 90407 hgsc.bcm.edu hg19 3 185213096 185213096 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TMEM41A NM_080652 exon3 c.T281C p.L94S CCAGCTAAAACAT . 118.0 38.0 112.0 0.0 . 18 . . Atlas-SNP GNPDA2 132789 hgsc.bcm.edu hg19 4 44713036 44713036 + Silent SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . GNPDA2 NM_138335 exon5 c.A528T p.G176G TAAATCTCCATCA . 84.0 20.0 109.0 0.0 . 28 . . Atlas-SNP QRFPR 84109 hgsc.bcm.edu hg19 4 122251606 122251606 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . QRFPR NM_198179 exon5 c.T870A p.H290Q GACAACATGGAAT . 48.0 10.0 71.0 0.0 . 65 . . Atlas-SNP FAT4 79633 hgsc.bcm.edu hg19 4 126398471 126398471 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . FAT4 NM_024582 exon13 c.C12455T p.A4152V TGGCAGCACAAGG . 78.0 14.0 97.0 0.0 . 1752 . . Atlas-SNP PHF17 79960 hgsc.bcm.edu hg19 4 129792936 129792936 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PHF17 NM_199320 exon11 c.A2048G p.K683R GTCACAAGCCTCT . 184.0 24.0 236.0 0.0 . 63 . . Atlas-SNP CLCN3 1182 hgsc.bcm.edu hg19 4 170618374 170618374 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CLCN3 NM_001829 exon9 c.G1052T p.R351I TATGGAGATCATT . 139.0 35.0 206.0 0.0 . 85 . . Atlas-SNP NNT 23530 hgsc.bcm.edu hg19 5 43649288 43649288 + Missense_Mutation SNP A A G rs199609080 TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . NNT NM_182977 exon11 c.A1484G p.N495S CTCCCAATCTAGC . 120.0 40.0 161.0 0.0 . 92 . A|0.999;G|0.001 Atlas-SNP ARHGEF28 64283 hgsc.bcm.edu hg19 5 73048892 73048892 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . NM_001080479 exon4 c.A340T p.S114C GCCTGCAGCCACC . 57.0 18.0 81.0 0.0 . . . . Atlas-SNP AQPEP 0 hgsc.bcm.edu hg19 5 115298661 115298661 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . NM_173800 exon1 c.G347A p.R116K AGCTGAGGCCCGA . 77.0 15.0 133.0 0.0 . . . . Atlas-SNP SPOCK1 6695 hgsc.bcm.edu hg19 5 136476319 136476319 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SPOCK1 NM_004598 exon4 c.C297T p.T99T GTCCTGGGTCACA . 91.0 11.0 115.0 0.0 . 58 . . Atlas-SNP PCDHA2 56146 hgsc.bcm.edu hg19 5 140176112 140176112 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PCDHA2 NM_031495 exon1 c.G1563T p.Q521H GCTGCAGCCGCTG . 101.0 26.0 110.0 0.0 . 404 . . Atlas-SNP PCDHB1 29930 hgsc.bcm.edu hg19 5 140432819 140432819 + Silent SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f PCDHB1,NS,haematopoietic_neoplasm,0,1 PCDHB1 NM_013340 exon1 c.C1764A p.T588T AGTGACCAAAGTG . 88.0 31.0 130.0 1.0 . 148 . . Atlas-SNP PDE6A 5145 hgsc.bcm.edu hg19 5 149323845 149323845 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PDE6A NM_000440 exon1 c.A392T p.E131V ACGATCTCTTGGT . 84.0 31.0 102.0 0.0 . 98 . . Atlas-SNP LRRC16A 55604 hgsc.bcm.edu hg19 6 25594713 25594713 + Missense_Mutation SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . LRRC16A NM_001173977 exon32 c.T3077C p.V1026A AAGGTGTAGATGA . 172.0 74.0 172.0 0.0 . 168 . . Atlas-SNP ZBTB12 221527 hgsc.bcm.edu hg19 6 31868735 31868735 + Silent SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZBTB12 NM_181842 exon2 c.G348A p.V116V TTTCTCCACCACG . 129.0 24.0 110.0 0.0 . 25 . . Atlas-SNP LRFN2 57497 hgsc.bcm.edu hg19 6 40399807 40399807 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . LRFN2 NM_020737 exon2 c.C1046A p.T349N GATGTGGTGATGA . 89.0 38.0 79.0 0.0 . 133 . . Atlas-SNP AIM1 202 hgsc.bcm.edu hg19 6 106967348 106967348 + Silent SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . AIM1 NM_001624 exon2 c.C1041A p.V347V TACCGTCTCGGAA . 172.0 51.0 232.0 0.0 . 161 . . Atlas-SNP FRK 2444 hgsc.bcm.edu hg19 6 116263781 116263781 + Silent SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . FRK NM_002031 exon8 c.A1314G p.T438T GGCACCTGTCATA . 106.0 14.0 166.0 0.0 . 78 . . Atlas-SNP PTPRK 5796 hgsc.bcm.edu hg19 6 128388924 128388924 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PTPRK NM_001135648 exon12 c.G1897T p.V633F CCACAACAATCTG . 61.0 15.0 73.0 0.0 . 330 . . Atlas-SNP VWDE 221806 hgsc.bcm.edu hg19 7 12414847 12414847 + Missense_Mutation SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . VWDE NM_001135924 exon8 c.A1031G p.E344G AGGTGCTCTCTAC . 64.0 11.0 84.0 0.0 . 123 . . Atlas-SNP PRPS1L1 221823 hgsc.bcm.edu hg19 7 18066745 18066745 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PRPS1L1 NM_175886 exon1 c.G661T p.D221Y CCATGTCATCTAC . 110.0 42.0 175.0 0.0 . 90 . . Atlas-SNP NPC1L1 29881 hgsc.bcm.edu hg19 7 44555418 44555418 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . NPC1L1 NM_013389 exon19 c.C3861T p.V1287V GAGGATGACGGGC . 114.0 16.0 138.0 0.0 . 141 . . Atlas-SNP MAGI2 9863 hgsc.bcm.edu hg19 7 77797303 77797303 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MAGI2 NM_012301 exon15 c.C2526T p.I842I GAGGTCGATGACA . 123.0 23.0 196.0 0.0 . 246 . . Atlas-SNP EPHB6 2051 hgsc.bcm.edu hg19 7 142564355 142564355 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . EPHB6 NM_004445 exon10 c.G1579A p.D527N TACTATGACCAGG . 56.0 21.0 80.0 0.0 . 168 . . Atlas-SNP PAXIP1 22976 hgsc.bcm.edu hg19 7 154759569 154759569 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PAXIP1 NM_007349 exon8 c.C1850A p.P617Q TGCTCTGGATAAT . 101.0 5.0 95.0 0.0 . 150 . . Atlas-SNP CYP11B1 1584 hgsc.bcm.edu hg19 8 143957288 143957288 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CYP11B1 NM_000497 exon6 c.T961A p.F321I AGGGAAACACCGT . 255.0 64.0 277.0 0.0 . 128 . . Atlas-SNP ARHGAP39 80728 hgsc.bcm.edu hg19 8 145759534 145759534 + Silent SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ARHGAP39 NM_025251 exon9 c.A2667T p.A889A CAGGGCTGCCTTC . 49.0 9.0 47.0 0.0 . 80 . . Atlas-SNP KCNV2 169522 hgsc.bcm.edu hg19 9 2718411 2718411 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . KCNV2 NM_133497 exon1 c.G672A p.A224A GCAGGCGCAGGTC . 81.0 36.0 134.0 0.0 . 72 . . Atlas-SNP KIAA1432 57589 hgsc.bcm.edu hg19 9 5770152 5770152 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . KIAA1432 NM_020829 exon23 c.A3490G p.I1164V GCTGGCATCTCCA . 68.0 15.0 78.0 0.0 . 97 . . Atlas-SNP PRUNE2 158471 hgsc.bcm.edu hg19 9 79319835 79319835 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PRUNE2 NM_015225 exon8 c.G7355T p.G2452V TGGGATCCAGGCA . 114.0 21.0 153.0 0.0 . 331 . . Atlas-SNP TRAF1 7185 hgsc.bcm.edu hg19 9 123675664 123675664 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TRAF1 NM_005658 exon5 c.C647T p.A216V GAGGTGGCCAGGG . 163.0 19.0 214.0 0.0 . 42 . . Atlas-SNP GRIN1 2902 hgsc.bcm.edu hg19 9 140040236 140040236 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . GRIN1 NM_000832 exon3 c.G452T p.W151L GCGTGTGGTTTGA . 82.0 20.0 117.0 0.0 . 51 . . Atlas-SNP CACNA1B 774 hgsc.bcm.edu hg19 9 140943745 140943745 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CACNA1B NM_001243812 exon24 c.G3688A p.A1230T AGTGGCGCCCTGG . 76.0 28.0 104.0 0.0 . 266 . . Atlas-SNP HELLS 3070 hgsc.bcm.edu hg19 10 96350209 96350209 + Nonsense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . HELLS NM_018063 exon14 c.C1528T p.R510X CCAAAACGACGAA . 197.0 8.0 325.0 0.0 . 63 . . Atlas-SNP WBP1L 54838 hgsc.bcm.edu hg19 10 104572770 104572770 + Missense_Mutation SNP G G C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . NM_001083913 exon4 c.G774C p.E258D CAAAGAGAAGACG . 47.0 8.0 65.0 0.0 . . . . Atlas-SNP SORCS1 114815 hgsc.bcm.edu hg19 10 108337267 108337267 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SORCS1 NM_052918 exon26 c.G3418A p.D1140N ATGAGTCACCAGG . 55.0 14.0 76.0 0.0 . 534 . . Atlas-SNP APBB1 322 hgsc.bcm.edu hg19 11 6424420 6424420 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . APBB1 NM_001164 exon6 c.A1059T p.Q353H CTCCTCTTGGGGC . 151.0 24.0 185.0 0.0 . 73 . . Atlas-SNP OR5D18 219438 hgsc.bcm.edu hg19 11 55587664 55587664 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . OR5D18 NM_001001952 exon1 c.T559A p.S187T CTACTCTCCCTTT . 84.0 8.0 121.0 0.0 . 121 . . Atlas-SNP OR1S1 219959 hgsc.bcm.edu hg19 11 57983133 57983133 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . OR1S1 NM_001004458 exon1 c.G917A p.R306K GCTTGAGGAATAA . 105.0 12.0 127.0 0.0 . 139 . . Atlas-SNP CPT1A 1374 hgsc.bcm.edu hg19 11 68540890 68540890 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CPT1A NM_001876 exon14 c.A1583T p.E528V ATAACCTCTTGAC . 65.0 13.0 70.0 0.0 . 89 . . Atlas-SNP PDZD3 79849 hgsc.bcm.edu hg19 11 119058343 119058343 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PDZD3 NM_001168468 exon6 c.G591A p.G197G CCCCGGGGCCCGG . 88.0 4.0 102.0 0.0 . 42 . . Atlas-SNP ARHGAP32 9743 hgsc.bcm.edu hg19 11 128838980 128838980 + Missense_Mutation SNP T T C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ARHGAP32 NM_001142685 exon22 c.A6086G p.Y2029C GAGTGGTAATCTT . 97.0 5.0 166.0 0.0 . 307 . . Atlas-SNP KRAS 3845 hgsc.bcm.edu hg19 12 25398284 25398284 + Missense_Mutation SNP C C T rs121913529 bycluster TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f KRAS_ENST00000256078,NS,adenocarcinoma,0,66 KRAS NM_004985 exon2 c.G35A p.G12D ACGCCACCAGCTC . 142.0 21.0 163.0 0.0 . 30930 . . Atlas-SNP DPY19L2 283417 hgsc.bcm.edu hg19 12 63974527 63974527 + Silent SNP G G A rs140003085 TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f DPY19L2,colon,carcinoma,-2,1 DPY19L2 NM_173812 exon19 c.C1815T p.L605L ATTACGGAGGTTT . 163.0 50.0 247.0 0.0 . 97 . . Atlas-SNP LRRIQ1 84125 hgsc.bcm.edu hg19 12 85450161 85450161 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . LRRIQ1 NM_001079910 exon8 c.A1590T p.L530F AGAATTAAAGTCT . 269.0 37.0 426.0 0.0 . 512 . . Atlas-SNP NCOR2 9612 hgsc.bcm.edu hg19 12 124882700 124882700 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . NCOR2 NM_006312 exon18 c.G1841A p.R614H GTCCAGCGAGAAC . 80.0 8.0 106.0 0.0 . 475 . . Atlas-SNP FREM2 341640 hgsc.bcm.edu hg19 13 39262692 39262692 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . FREM2 NM_207361 exon1 c.A1211T p.Q404L CTGACCAGGAGCG . 92.0 14.0 99.0 0.0 . 385 . . Atlas-SNP COG3 83548 hgsc.bcm.edu hg19 13 46067592 46067592 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . COG3 NM_031431 exon12 c.A1298T p.E433V AAAATGAGGTGCT . 58.0 20.0 102.0 0.0 . 52 . . Atlas-SNP TEP1 7011 hgsc.bcm.edu hg19 14 20847004 20847004 + Missense_Mutation SNP T T C rs111632717 TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TEP1 NM_007110 exon37 c.A5261G p.Q1754R TTAGTCTGCAGCA . 93.0 20.0 119.0 0.0 . 224 . T|0.500;C|0.500 Atlas-SNP KHNYN 23351 hgsc.bcm.edu hg19 14 24905674 24905674 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . KHNYN NM_015299 exon7 c.A1766T p.E589V TGGATGAATTTCT . 60.0 15.0 92.0 0.0 . 46 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52485915 52485915 + Silent SNP G G A rs142814187 TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . NID2 NM_007361 exon14 c.C2892T p.D964D CTGCTCGTCGCAT . 86.0 16.0 141.0 0.0 . 201 . G|1.000;A|0.000 Atlas-SNP SLC8A3 6547 hgsc.bcm.edu hg19 14 70633575 70633575 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SLC8A3 NM_183002 exon2 c.C1565T p.T522I AAGATGGTAACTG . 70.0 9.0 107.0 0.0 . 234 . . Atlas-SNP EML5 161436 hgsc.bcm.edu hg19 14 89094074 89094074 + Missense_Mutation SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . EML5 NM_183387 exon33 c.G4447T p.V1483F AGCTGACTGAACA . 69.0 28.0 47.0 0.0 . 141 . . Atlas-SNP RFX7 64864 hgsc.bcm.edu hg19 15 56386765 56386765 + Missense_Mutation SNP G G C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . RFX7 NM_022841 exon9 c.C3161G p.A1054G TGTGTGGCCATGG . 62.0 21.0 102.0 0.0 . 170 . . Atlas-SNP MEF2A 4205 hgsc.bcm.edu hg19 15 100252723 100252723 + Missense_Mutation SNP A A C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MEF2A NM_005587 exon11 c.A1247C p.Q416P AGCAGCAGCAGCA . 32.0 7.0 30.0 0.0 . 138 . . Atlas-SNP MEF2A 4205 hgsc.bcm.edu hg19 15 100252726 100252726 + Missense_Mutation SNP A A C rs200861006 TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MEF2A NM_005587 exon11 c.A1250C p.Q417P AGCAGCAGCAGCA . 32.0 5.0 30.0 0.0 . 138 . . Atlas-SNP MEFV 4210 hgsc.bcm.edu hg19 16 3304621 3304621 + Silent SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MEFV NM_000243 exon2 c.C447T p.A149A CCTCCCGGCCTCG . 20.0 6.0 39.0 0.0 . 170 . . Atlas-SNP KCTD13 253980 hgsc.bcm.edu hg19 16 29934567 29934567 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . KCTD13 NM_178863 exon2 c.G358A p.E120K GTGCTTCGCCCAG . 85.0 33.0 123.0 0.0 . 19 . . Atlas-SNP VPS35 55737 hgsc.bcm.edu hg19 16 46708524 46708524 + Missense_Mutation SNP A A C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . VPS35 NM_018206 exon9 c.T963G p.D321E TTTAATATCCGCT . 77.0 11.0 137.0 0.0 . 49 . . Atlas-SNP CDH1 999 hgsc.bcm.edu hg19 16 68849632 68849632 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CDH1 NM_004360 exon10 c.A1535T p.E512V CCCAGGAGCCAGA . 104.0 27.0 170.0 0.0 . 535 . . Atlas-SNP CCDC103 388389 hgsc.bcm.edu hg19 17 42979763 42979763 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CCDC103 NM_001258399 exon4 c.G311A p.C104Y ACGTCTGCTGACT . 104.0 38.0 109.0 0.0 . 15 . . Atlas-SNP TLK2 11011 hgsc.bcm.edu hg19 17 60599622 60599622 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TLK2 NM_001112707 exon4 c.G211A p.E71K CCATATGAAACTA . 373.0 128.0 474.0 0.0 . 223 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 6985272 6985272 + Missense_Mutation SNP G G C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . LAMA1 NM_005559 exon39 c.C5624G p.A1875G TCAGCGGCATGGT . 85.0 13.0 76.0 0.0 . 458 . . Atlas-SNP ASXL3 80816 hgsc.bcm.edu hg19 18 31323438 31323438 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f ASXL3_ENST00000269197,NS,carcinoma,0,2 ASXL3 NM_030632 exon12 c.T3626A p.V1209E TACCTGTGTCACA . 68.0 24.0 91.0 0.0 . 405 . . Atlas-SNP CAMSAP3 57662 hgsc.bcm.edu hg19 19 7676885 7676885 + Silent SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . CAMSAP3 NM_001080429 exon13 c.C1587T p.P529P CCTGCCCGAGGGG . 58.0 7.0 100.0 0.0 . 131 . . Atlas-SNP WIZ 58525 hgsc.bcm.edu hg19 19 15547669 15547669 + Silent SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . WIZ NM_021241 exon3 c.G477A p.T159T GGGCACCGTGAGA . 165.0 21.0 190.0 0.0 . 152 . . Atlas-SNP ZNF728 388523 hgsc.bcm.edu hg19 19 23159057 23159057 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . NM_001267716 exon4 c.T1082C p.I361T GTATGAATTACCT . 33.0 12.0 24.0 0.0 . . . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30936235 30936235 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZNF536 NM_014717 exon2 c.G1766A p.G589D AAGTGGGCAGCCA . 98.0 35.0 129.0 0.0 . 424 . . Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30936236 30936236 + Silent SNP C C A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZNF536 NM_014717 exon2 c.C1767A p.G589G AGTGGGCAGCCAG . 98.0 35.0 129.0 0.0 . 424 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39034257 39034257 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . RYR1 NM_000540 exon86 c.C11864T p.S3955L CCATGTCGGTGGC . 71.0 7.0 84.0 0.0 . 708 . . Atlas-SNP PRX 57716 hgsc.bcm.edu hg19 19 40901569 40901569 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PRX NM_181882 exon7 c.G2690A p.R897Q GGCACTCGGAAGC . 96.0 17.0 95.0 0.0 . 151 . . Atlas-SNP ZNF610 162963 hgsc.bcm.edu hg19 19 52869167 52869167 + Missense_Mutation SNP A A G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZNF610 NM_001161426 exon6 c.A536G p.Y179C ATAAATATAGAAA . 139.0 48.0 165.0 0.0 . 84 . . Atlas-SNP EPS8L1 54869 hgsc.bcm.edu hg19 19 55593208 55593208 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . EPS8L1 NM_133180 exon9 c.C842T p.A281V CGGAGGCGGCCAG . 168.0 34.0 185.0 0.0 . 122 . . Atlas-SNP ZNF544 27300 hgsc.bcm.edu hg19 19 58772416 58772416 + Missense_Mutation SNP G G C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZNF544 NM_014480 exon7 c.G444C p.E148D CTCAGAGAGACTG . 128.0 19.0 142.0 0.0 . 57 . . Atlas-SNP TRPC4AP 26133 hgsc.bcm.edu hg19 20 33657145 33657145 + Missense_Mutation SNP G G C novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TRPC4AP NM_199368 exon3 c.C368G p.T123S TAAGTGGTTTCTT . 316.0 111.0 411.0 0.0 . 64 . . Atlas-SNP EMILIN3 90187 hgsc.bcm.edu hg19 20 39993687 39993687 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . EMILIN3 NM_052846 exon2 c.C278A p.P93H GTCCCGGGGCACT . 51.0 19.0 82.0 0.0 . 63 . . Atlas-SNP JPH2 57158 hgsc.bcm.edu hg19 20 42788721 42788721 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . JPH2 NM_020433 exon2 c.C706T p.R236C ACGTGCGCGACTC . 114.0 8.0 188.0 0.0 . 86 . . Atlas-SNP SS18L1 26039 hgsc.bcm.edu hg19 20 60739279 60739279 + Missense_Mutation SNP T T G novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SS18L1 NM_198935 exon7 c.T800G p.M267R AGCCCATGGGCCA . 151.0 11.0 158.0 0.0 . 37 . . Atlas-SNP COL20A1 57642 hgsc.bcm.edu hg19 20 61951458 61951458 + Missense_Mutation SNP C C T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f COL20A1,NS,malignant_melanoma,0,1 COL20A1 NM_020882 exon24 c.C2984T p.P995L AGCGGCCCCTTGG . 108.0 39.0 110.0 0.0 . 137 . . Atlas-SNP RCAN1 1827 hgsc.bcm.edu hg19 21 35893850 35893850 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . RCAN1 NM_004414 exon3 c.C533T p.A178V GGGGTCGCATCTT . 113.0 16.0 119.0 0.0 . 37 . . Atlas-SNP NCF4 4689 hgsc.bcm.edu hg19 22 37273743 37273743 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . NCF4 NM_000631 exon10 c.G898T p.D300Y CTGTCGGATGAGG . 62.0 20.0 86.0 0.0 . 66 . . Atlas-SNP ARSH 347527 hgsc.bcm.edu hg19 X 2951122 2951122 + Missense_Mutation SNP G G T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ARSH NM_001011719 exon9 c.G1385T p.C462F GTGCCTGCTATGG . 92.0 11.0 123.0 0.0 . 72 . . Atlas-SNP MID1 4281 hgsc.bcm.edu hg19 X 10535300 10535300 + Silent SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MID1 NM_001193277 exon2 c.T288A p.S96S GCTGGGAGAGTTG . 74.0 14.0 157.0 0.0 . 72 . . Atlas-SNP MAP3K15 389840 hgsc.bcm.edu hg19 X 19413261 19413261 + Missense_Mutation SNP T T A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MAP3K15 NM_001001671 exon16 c.A2132T p.Q711L AGGTACTGAACGA . 70.0 16.0 144.0 0.0 . 108 . . Atlas-SNP PAK3 5063 hgsc.bcm.edu hg19 X 110459745 110459745 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PAK3 NM_001128168 exon15 c.A1612T p.M538L CTTGAGATGGATG . 90.0 8.0 119.0 0.0 . 179 . . Atlas-SNP SAGE1 55511 hgsc.bcm.edu hg19 X 134988200 134988200 + Missense_Mutation SNP A A T novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . SAGE1 NM_018666 exon6 c.A472T p.N158Y ACTCACAATATCC . 62.0 11.0 127.0 0.0 . 160 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 6993 6993 + Missense_Mutation SNP G G A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . . ENST00000361624 exon1 c.G1090A p.D364N TCACTAGACATCG . 21.0 7.0 33.0 0.0 . . . . Atlas-SNP FEZF2 55079 hgsc.bcm.edu hg19 3 62358208 62358209 + In_Frame_Ins INS - - CCA novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . FEZF2 NM_018008 exon2 c.336_337insTGG p.G112delinsGG . . 40.0 12.0 58.0 0.0 . 46 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74279249 74279251 + In_Frame_Del DEL ATG ATG - novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 ATG ATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ALB NM_000477 exon8 c.955_957del p.319_319del . . 128.0 37.0 180.0 0.0 . 132 . . Atlas-INDEL TDRD5 163589 hgsc.bcm.edu hg19 1 179599927 179599928 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . TDRD5 NM_001199091 exon7 c.998_999insA p.P333fs . . 308.0 30.0 224.0 0.0 . 149 . . Atlas-INDEL PRIMA1 145270 hgsc.bcm.edu hg19 14 94245574 94245575 + Frame_Shift_Ins INS - - GGGG novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . PRIMA1 NM_178013 exon3 c.177_178insCCCC p.P59fs . . 73.0 24.0 105.0 0.0 . 21 . . Atlas-INDEL ZNF791 163049 hgsc.bcm.edu hg19 19 12739581 12739581 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . ZNF791 NM_153358 exon4 c.1237delG p.E413fs . . 103.0 12.0 147.0 0.0 . 53 . . Atlas-INDEL MLXIPL 51085 hgsc.bcm.edu hg19 7 73020079 73020096 + In_Frame_Del DEL GTCAGCATTGCCGACGTA GTCAGCATTGCCGACGTA - novel TCGA-DD-AADA-01A-11D-A40R-10 TCGA-DD-AADA-10A-01D-A40U-10 GTCAGCATTGCCGACGTA GTCAGCATTGCCGACGTA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 01012d58-9532-4536-8712-4829e4645133 d5357b31-faf2-4e43-b215-8370741d689f . MLXIPL NM_032953 exon7 c.824_841del p.275_281del . . 79.0 18.0 120.0 0.0 . 54 . . Atlas-INDEL