Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
DFFA	1676	hgsc.bcm.edu	hg19	1	10523576	10523576	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	DFFA	NM_004401	exon4	c.A543G	p.Q181Q	CTCTCTTTGGTCA	.	25.0	13.0	29.0	0.0	.	24	.	.	Atlas-SNP
MYCL1	4610	hgsc.bcm.edu	hg19	1	40366890	40366890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MYCL1	NM_005376	exon2	c.G307T	p.A103S	ATTCCGCTTCGTC	.	82.0	21.0	157.0	0.0	.	36	.	.	Atlas-SNP
SLC1A7	6512	hgsc.bcm.edu	hg19	1	53553703	53553703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SLC1A7	NM_006671	exon11	c.G1661A	p.S554N	AGCTCACTGATCT	.	86.0	49.0	107.0	0.0	.	65	.	.	Atlas-SNP
IVL	3713	hgsc.bcm.edu	hg19	1	152883884	152883884	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	IVL	NM_005547	exon2	c.G1611A	p.K537K	GCAGAAGGGGCAG	.	76.0	19.0	88.0	0.0	.	100	.	.	Atlas-SNP
IQGAP3	128239	hgsc.bcm.edu	hg19	1	156503902	156503902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	IQGAP3	NM_178229	exon30	c.G3772C	p.E1258Q	CTGGCTCTGGCAC	.	29.0	9.0	26.0	0.0	.	146	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156815496	156815496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	INSRR	NM_014215	exon10	c.C2089A	p.Q697K	GAACCTGACCAGG	.	74.0	19.0	58.0	0.0	.	309	.	.	Atlas-SNP
ATP1A2	477	hgsc.bcm.edu	hg19	1	160093074	160093074	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ATP1A2	NM_000702	exon4	c.A249G	p.T83T	TCCCACAACCCCT	.	88.0	26.0	62.0	0.0	.	167	.	.	Atlas-SNP
TNN	63923	hgsc.bcm.edu	hg19	1	175048844	175048844	+	Splice_Site	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TNN	NM_022093	exon3	c.784+1G>A	.	CCCAGGGTGAGAG	.	98.0	34.0	107.0	0.0	.	297	.	.	Atlas-SNP
KIF21B	23046	hgsc.bcm.edu	hg19	1	200946389	200946389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	KIF21B	NM_001252102	exon31	c.A4276G	p.M1426V	ACAGCATGGTGCC	.	64.0	20.0	72.0	0.0	.	208	.	.	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202273760	202273760	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	LGR6	NM_001017403	exon11	c.1070+2T>A	.	GTCCTGTGAGTGC	.	105.0	23.0	77.0	0.0	.	102	.	.	Atlas-SNP
IRF6	3664	hgsc.bcm.edu	hg19	1	209961787	209961787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	IRF6	NM_006147	exon9	c.C1382T	p.P461L	GCAGGGGGCAGTT	.	55.0	19.0	48.0	0.0	.	65	.	.	Atlas-SNP
TATDN3	128387	hgsc.bcm.edu	hg19	1	212977961	212977961	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TATDN3	NM_001146169	exon7	c.G455C	p.G152A	CTGCTGGAAGACC	.	211.0	68.0	230.0	0.0	.	23	.	.	Atlas-SNP
ANGEL2	90806	hgsc.bcm.edu	hg19	1	213181634	213181634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ANGEL2	NM_144567	exon3	c.A560G	p.Y187C	TGTCTATAAAGGT	.	150.0	38.0	178.0	0.0	.	45	.	.	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223284946	223284946	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TLR5	NM_003268	exon6	c.A1428G	p.E476E	AAGCTGTTCTAAG	.	102.0	13.0	79.0	0.0	.	86	.	.	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	hg19	1	228399589	228399589	+	Silent	SNP	T	T	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	OBSCN	NM_001271223	exon2	c.T105G	p.G35G	CGTGGGTAATCCC	.	128.0	32.0	119.0	0.0	.	2142	.	.	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	hg19	1	234565278	234565278	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TARBP1	NM_005646	exon16	c.C2755T	p.L919L	CAGGTAGAAACGG	.	161.0	39.0	149.0	0.0	.	111	.	.	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	hg19	1	238045816	238045816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ZP4	NM_021186	exon12	c.C1529A	p.A510E	AGGCCTGCCACCC	.	57.0	23.0	57.0	0.0	.	161	.	.	Atlas-SNP
GEN1	348654	hgsc.bcm.edu	hg19	2	17962727	17962727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	GEN1_ENST00000381254,NS,carcinoma,0,1	GEN1	NM_182625	exon14	c.G2248T	p.V750F	TATAAAGTCAATA	.	90.0	33.0	96.0	0.0	.	79	.	.	Atlas-SNP
EFR3B	22979	hgsc.bcm.edu	hg19	2	25364302	25364302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	EFR3B	NM_014971	exon17	c.G1922A	p.R641K	GGCCCAGGTGAGG	.	38.0	14.0	54.0	0.0	.	29	.	.	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	hg19	2	27261574	27261574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TMEM214	NM_017727	exon12	c.A1298G	p.Q433R	AGGTACAGAAGTC	.	56.0	21.0	58.0	0.0	.	41	.	.	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	hg19	2	50573856	50573856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NRXN1	NM_138735	exon1	c.T232C	p.S78P	CCGGTGACCTGTA	.	46.0	17.0	49.0	0.0	.	1118	.	.	Atlas-SNP
MEIS1	4211	hgsc.bcm.edu	hg19	2	66664888	66664888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MEIS1	NM_002398	exon2	c.A32G	p.Y11C	CCCATTACGGGGG	.	72.0	23.0	56.0	0.0	.	52	.	.	Atlas-SNP
ALMS1	7840	hgsc.bcm.edu	hg19	2	73680731	73680731	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ALMS1	NM_015120	exon8	c.T7074A	p.V2358V	TACAGTTAGAAGT	.	86.0	14.0	87.0	0.0	.	384	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160879323	160879323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PLA2R1	NM_001195641	exon7	c.A1147G	p.N383D	AGGGATTCCAGCC	.	66.0	22.0	87.0	0.0	.	153	.	.	Atlas-SNP
PLA2R1	22925	hgsc.bcm.edu	hg19	2	160901376	160901376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PLA2R1	NM_001195641	exon2	c.T402G	p.H134Q	GTTGTCATGCGCC	.	80.0	10.0	106.0	0.0	.	153	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210650854	210650854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	UNC80	NM_182587	exon5	c.G665T	p.R222I	AACACAGACAGCC	.	53.0	23.0	46.0	0.0	.	280	.	.	Atlas-SNP
ERBB4	2066	hgsc.bcm.edu	hg19	2	212495254	212495254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ERBB4	NM_001042599	exon17	c.T2012C	p.F671S	ACAGCAAATGTCA	.	64.0	23.0	74.0	0.0	.	480	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215890440	215890440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ABCA12	NM_173076	exon11	c.A1244G	p.Y415C	TCTTCATAGGAAC	.	31.0	10.0	47.0	0.0	.	368	.	.	Atlas-SNP
D2HGDH	728294	hgsc.bcm.edu	hg19	2	242684139	242684139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	D2HGDH	NM_152783	exon6	c.A700G	p.T234A	GACGGCACTGTCC	.	84.0	7.0	105.0	0.0	.	39	.	.	Atlas-SNP
ABHD5	51099	hgsc.bcm.edu	hg19	3	43743957	43743957	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	ABHD5,colon,carcinoma,0,1	ABHD5	NM_016006	exon3	c.G384A	p.E128E	AGTGGAGAATCAG	.	109.0	39.0	95.0	0.0	.	33	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48624721	48624721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	COL7A1	NM_000094	exon23	c.G3041A	p.R1014Q	GTCACCCGCTGGG	.	176.0	62.0	159.0	0.0	.	320	.	.	Atlas-SNP
OR5H1	26341	hgsc.bcm.edu	hg19	3	97852199	97852199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	OR5H1	NM_001005338	exon1	c.T658A	p.F220I	TATACATTTGTTC	.	96.0	27.0	129.0	0.0	.	71	.	.	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148924011	148924011	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CP	NM_000096	exon6	c.C1152G	p.N384K	AGCATAGTTCCAG	.	97.0	24.0	76.0	0.0	.	112	.	.	Atlas-SNP
COMMD2	51122	hgsc.bcm.edu	hg19	3	149468548	149468548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	COMMD2	NM_016094	exon4	c.A319G	p.R107G	CTTTTCTGTTGTC	.	142.0	38.0	148.0	0.0	.	21	.	.	Atlas-SNP
ATP13A5	344905	hgsc.bcm.edu	hg19	3	193029669	193029669	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ATP13A5	NM_198505	exon20	c.A2381T	p.H794L	GCAAAATGGTAAC	.	86.0	28.0	52.0	0.0	.	171	.	.	Atlas-SNP
BANK1	55024	hgsc.bcm.edu	hg19	4	102951351	102951351	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	BANK1	NM_017935	exon10	c.G1829C	p.R610T	TAAATAGACCTCC	.	171.0	8.0	225.0	0.0	.	95	.	.	Atlas-SNP
NDST4	64579	hgsc.bcm.edu	hg19	4	115754812	115754812	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NDST4	NM_022569	exon12	c.C2346A	p.V782V	CTTCTGGACTTCA	.	84.0	7.0	157.0	0.0	.	193	.	.	Atlas-SNP
SPCS3	60559	hgsc.bcm.edu	hg19	4	177249473	177249473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SPCS3	NM_021928	exon5	c.A535G	p.S179G	ACGAAGAGTTATT	.	37.0	6.0	59.0	0.0	.	15	.	.	Atlas-SNP
IRX4	50805	hgsc.bcm.edu	hg19	5	1882113	1882113	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	IRX4	NM_016358	exon2	c.G106C	p.D36H	CGGAGTCCGCCAG	.	65.0	17.0	89.0	0.0	.	45	.	.	Atlas-SNP
NIM1	0	hgsc.bcm.edu	hg19	5	43280745	43280745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	.	NM_153361	exon4	c.C1225A	p.P409T	ATGCTACCAGACC	.	51.0	17.0	49.0	0.0	.	.	.	.	Atlas-SNP
MTX3	345778	hgsc.bcm.edu	hg19	5	79285983	79285983	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MTX3	NM_001010891	exon3	c.G228A	p.Q76Q	ACCCACCTGTTTT	.	291.0	65.0	377.0	0.0	.	29	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118560447	118560447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	DMXL1	NM_005509	exon37	c.A8258G	p.H2753R	CTTCTCATCCAAC	.	194.0	48.0	239.0	0.0	.	268	.	.	Atlas-SNP
CDC25C	995	hgsc.bcm.edu	hg19	5	137625188	137625188	+	Splice_Site	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CDC25C	NM_022809	exon8	c.708+2T>C	.	CTGCTTACTGTTT	.	67.0	12.0	75.0	0.0	.	37	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140236128	140236128	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PCDHA10	NM_031859	exon1	c.A495G	p.A165A	GAACGCATTGCTT	.	196.0	38.0	245.0	0.0	.	358	.	.	Atlas-SNP
NR3C1	2908	hgsc.bcm.edu	hg19	5	142680245	142680245	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NR3C1	NM_001024094	exon5	c.A1555T	p.K519X	TTGTTTTGTTACC	.	90.0	14.0	118.0	0.0	.	124	.	.	Atlas-SNP
HIST1H2BM	8342	hgsc.bcm.edu	hg19	6	27782903	27782903	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	HIST1H2BM	NM_003521	exon1	c.A82T	p.K28X	GATGGAAAGAAGC	.	88.0	37.0	111.0	0.0	.	36	.	.	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39867896	39867896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	DAAM2	NM_001201427	exon23	c.A2723C	p.K908T	GTGACAAGTTTGT	.	48.0	11.0	55.0	0.0	.	101	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46982578	46982578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	GPR110	NM_153840	exon9	c.C766A	p.Q256K	TACACTGGGCTGG	.	51.0	13.0	62.0	0.0	.	102	.	.	Atlas-SNP
GPR110	266977	hgsc.bcm.edu	hg19	6	46982580	46982580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	GPR110	NM_153840	exon9	c.C764G	p.A255G	CACTGGGCTGGAA	.	49.0	14.0	63.0	0.0	.	102	.	.	Atlas-SNP
TMEM196	256130	hgsc.bcm.edu	hg19	7	19812310	19812310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TMEM196	NM_152774	exon1	c.A10G	p.S4G	GACCGCTGGTGCA	.	61.0	22.0	69.0	0.0	.	34	.	.	Atlas-SNP
PPP1R17	10842	hgsc.bcm.edu	hg19	7	31735086	31735086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	.	NM_006658	exon3	c.A86G	p.D29G	TAGATGATCTTTC	.	77.0	22.0	54.0	0.0	.	.	.	.	Atlas-SNP
CDK13	8621	hgsc.bcm.edu	hg19	7	40102432	40102432	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CDK13	NM_003718	exon8	c.T2608A	p.Y870N	CGGCCGTATACTA	.	48.0	6.0	95.0	0.0	.	114	.	.	Atlas-SNP
COA1	55744	hgsc.bcm.edu	hg19	7	43684913	43684913	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	.	NM_018224	exon4	c.T201C	p.P67P	GTTGAGAGGAGGG	.	76.0	26.0	78.0	0.0	.	.	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47476876	47476876	+	Silent	SNP	C	C	T	rs376868413		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TNS3	NM_022748	exon7	c.G186A	p.T62T	AAGCTTCGTAAGG	.	203.0	68.0	229.0	0.0	.	140	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48327638	48327638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ABCA13	NM_152701	exon20	c.C8918T	p.A2973V	TATCTGCTATACA	.	67.0	12.0	62.0	0.0	.	1192	.	.	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	hg19	7	81591327	81591327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CACNA2D1	NM_000722	exon36	c.A2849G	p.D950G	TCATCATCCTCCA	.	55.0	13.0	79.0	0.0	.	191	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82585807	82585807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PCLO	NM_014510	exon5	c.C4462T	p.P1488S	TGGAAGGAATATC	.	49.0	14.0	50.0	0.0	.	1506	.	.	Atlas-SNP
PIK3CG	5294	hgsc.bcm.edu	hg19	7	106509974	106509974	+	Silent	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PIK3CG	NM_002649	exon2	c.T1968C	p.V656V	TGATGTTCTGCAT	.	77.0	19.0	86.0	0.0	.	279	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121651010	121651010	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PTPRZ1	NM_001206838	exon12	c.C1910A	p.S637X	CTTCATCAGGTTC	.	102.0	34.0	129.0	0.0	.	605	.	.	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	hg19	7	141762461	141762461	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MGAM	NM_004668	exon35	c.C4216T	p.Q1406X	AATCCACAGAATC	.	285.0	77.0	312.0	0.0	.	767	.	.	Atlas-SNP
CALB1	793	hgsc.bcm.edu	hg19	8	91094273	91094273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CALB1	NM_004929	exon2	c.C137A	p.A46E	TTTCGCGCCTGCT	.	53.0	28.0	60.0	0.0	.	25	.	.	Atlas-SNP
TSNARE1	203062	hgsc.bcm.edu	hg19	8	143427217	143427217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TSNARE1	NM_145003	exon3	c.A125G	p.H42R	GGGAAATGGCGGA	.	46.0	27.0	42.0	0.0	.	59	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144993679	144993679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PLEC	NM_201380	exon32	c.G10721A	p.R3574K	GGGTCTCTGTAGC	.	63.0	11.0	41.0	0.0	.	1144	.	.	Atlas-SNP
CPSF1	29894	hgsc.bcm.edu	hg19	8	145619689	145619689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CPSF1	NM_013291	exon32	c.A3649G	p.S1217G	TGACGCTGATCAT	.	139.0	70.0	93.0	0.0	.	92	.	.	Atlas-SNP
TEK	7010	hgsc.bcm.edu	hg19	9	27157869	27157869	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TEK	NM_000459	exon2	c.C93T	p.S31S	CAATTCCCTACCT	.	92.0	30.0	96.0	0.0	.	250	.	.	Atlas-SNP
C9orf131	138724	hgsc.bcm.edu	hg19	9	35045263	35045263	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	C9orf131	NM_203299	exon2	c.G2637A	p.R879R	TGGCAGGGCGGAA	.	67.0	14.0	67.0	0.0	.	71	.	.	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113192616	113192616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SVEP1	NM_153366	exon33	c.G5468A	p.G1823E	GTTACTCCCATCA	.	92.0	23.0	86.0	0.0	.	326	.	.	Atlas-SNP
PTGR1	22949	hgsc.bcm.edu	hg19	9	114325430	114325430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PTGR1	NM_001146108	exon10	c.A961G	p.N321D	CCAAATTATCTCC	.	33.0	9.0	40.0	0.0	.	23	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132630495	132630495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	USP20	NM_001008563	exon11	c.G902T	p.G301V	GGCGTGGCGGGGG	.	98.0	25.0	107.0	0.0	.	186	.	.	Atlas-SNP
IL2RA	3559	hgsc.bcm.edu	hg19	10	6061403	6061403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	IL2RA	NM_000417	exon6	c.T715C	p.Y239H	CCTGGTACTCTGT	.	51.0	14.0	56.0	0.0	.	37	.	.	Atlas-SNP
TMEM72	643236	hgsc.bcm.edu	hg19	10	45429084	45429084	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TMEM72	NM_001123376	exon4	c.210-1G>T	.	TCCCCAGGTGTCA	.	43.0	13.0	43.0	0.0	.	25	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	56077047	56077047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PCDH15	NM_001142763	exon9	c.C875A	p.P292H	AACTCAGGTATGG	.	100.0	10.0	113.0	0.0	.	1715	.	.	Atlas-SNP
H2AFY2	55506	hgsc.bcm.edu	hg19	10	71855484	71855484	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	H2AFY2	NM_018649	exon6	c.C663T	p.A221A	CACAGCCGAAATT	.	103.0	20.0	87.0	0.0	.	30	.	.	Atlas-SNP
COL17A1	1308	hgsc.bcm.edu	hg19	10	105792488	105792488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	COL17A1	NM_000494	exon55	c.C4382A	p.P1461Q	TGACCTGGTGGCC	.	44.0	13.0	51.0	0.0	.	149	.	.	Atlas-SNP
SORCS3	22986	hgsc.bcm.edu	hg19	10	106937875	106937875	+	Silent	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SORCS3	NM_014978	exon14	c.T1953A	p.V651V	TTCGGTTCCTCTC	.	92.0	7.0	104.0	0.0	.	282	.	.	Atlas-SNP
MKI67	4288	hgsc.bcm.edu	hg19	10	129900917	129900917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MKI67	NM_002417	exon13	c.G9187A	p.E3063K	GCTCTTCCGCAGG	.	55.0	22.0	83.0	0.0	.	363	.	.	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	hg19	11	1017614	1017614	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	NM_005961	exon31	c.C5187T	p.T1729T	ACTGGTGGTCACT	.	139.0	19.0	143.0	0.0	.	408	.	.	Atlas-SNP
OR51G1	79324	hgsc.bcm.edu	hg19	11	4944735	4944735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	OR51G1	NM_001005237	exon1	c.T835C	p.S279P	CATAGGACATGAA	.	74.0	24.0	101.0	0.0	.	74	.	.	Atlas-SNP
OR6A2	8590	hgsc.bcm.edu	hg19	11	6816411	6816411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	OR6A2	NM_003696	exon1	c.A529T	p.N177Y	TGATGTTGGGGCC	.	66.0	10.0	79.0	0.0	.	68	.	.	Atlas-SNP
PRDM11	56981	hgsc.bcm.edu	hg19	11	45203392	45203392	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PRDM11	NM_001256695	exon2	c.G75T	p.T25T	GAAGACGGAGGTC	.	48.0	18.0	34.0	0.0	.	53	.	.	Atlas-SNP
MAPK8IP1	9479	hgsc.bcm.edu	hg19	11	45926375	45926375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MAPK8IP1	NM_005456	exon9	c.A1883T	p.Q628L	ACTCCCAGGAGGC	.	51.0	17.0	54.0	0.0	.	51	.	.	Atlas-SNP
OR9G9	504191	hgsc.bcm.edu	hg19	11	56468271	56468271	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	.	NM_001013358	exon1	c.C408A	p.S136S	CATGTCCATAAAG	.	101.0	15.0	125.0	0.0	.	.	.	.	Atlas-SNP
EHD1	10938	hgsc.bcm.edu	hg19	11	64627602	64627602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	EHD1	NM_006795	exon3	c.A709G	p.M237V	ACCACATGAGGGC	.	130.0	43.0	151.0	0.0	.	31	.	.	Atlas-SNP
EHBP1L1	254102	hgsc.bcm.edu	hg19	11	65351982	65351982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	EHBP1L1	NM_001099409	exon11	c.A3277T	p.N1093Y	CCACTCAACATCA	.	75.0	32.0	79.0	0.0	.	64	.	.	Atlas-SNP
FOLR1	2348	hgsc.bcm.edu	hg19	11	71906452	71906452	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	FOLR1	NM_016729	exon2	c.G306A	p.Q102Q	CATCCAGGACACC	.	51.0	20.0	68.0	0.0	.	22	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73811676	73811676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	C2CD3	NM_015531	exon15	c.A2626G	p.N876D	CATTGTTCTTAAG	.	79.0	25.0	93.0	0.0	.	288	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117651413	117651413	+	Silent	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	DSCAML1	NM_020693	exon2	c.C339A	p.P113P	CGCGCTGGGGGAG	.	46.0	12.0	45.0	0.0	.	286	.	.	Atlas-SNP
GRIK4	2900	hgsc.bcm.edu	hg19	11	120831719	120831719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	GRIK4	NM_014619	exon15	c.T1976G	p.L659R	ATGACCTGGCTGA	.	86.0	30.0	55.0	0.0	.	149	.	.	Atlas-SNP
OPCML	4978	hgsc.bcm.edu	hg19	11	132812856	132812856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	OPCML	NM_002545	exon1	c.C132A	p.N44K	CGTCACGTTGTCC	.	50.0	16.0	63.0	0.0	.	166	.	.	Atlas-SNP
CASC1	55259	hgsc.bcm.edu	hg19	12	25272106	25272106	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CASC1	NM_001082972	exon12	c.C1543G	p.P515A	CCACAGGATCCTC	.	79.0	32.0	82.0	0.0	.	146	.	.	Atlas-SNP
CCNT1	904	hgsc.bcm.edu	hg19	12	49099564	49099564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CCNT1	NM_001240	exon3	c.A359G	p.D120G	CTAGTATCAGGAA	.	52.0	20.0	43.0	0.0	.	55	.	.	Atlas-SNP
TMEM194A	23306	hgsc.bcm.edu	hg19	12	57472462	57472462	+	Missense_Mutation	SNP	C	C	T	rs368361522	alternate_allele	TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	TMEM194A	NM_015257	exon1	c.G67A	p.G23R	CGCCCCCGACTCC	.	63.0	16.0	57.0	0.0	.	64	.	.	Atlas-SNP
LUM	4060	hgsc.bcm.edu	hg19	12	91501990	91501990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	LUM	NM_002345	exon2	c.T767C	p.L256P	TCAACCAGGGATG	.	60.0	16.0	64.0	0.0	.	65	.	.	Atlas-SNP
BTBD11	121551	hgsc.bcm.edu	hg19	12	107713276	107713276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	BTBD11	NM_001018072	exon1	c.T559A	p.S187T	GCACTGTCCCTCT	.	60.0	20.0	47.0	0.0	.	122	.	.	Atlas-SNP
ACACB	32	hgsc.bcm.edu	hg19	12	109690864	109690864	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ACACB	NM_001093	exon42	c.C5946T	p.G1982G	GGGTGGCGTTCAG	.	76.0	20.0	102.0	0.0	.	330	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35632909	35632909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NBEA	NM_015678	exon8	c.T1148G	p.F383C	GGGTATTCTGTGG	.	204.0	12.0	234.0	0.0	.	340	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	35770382	35770382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NBEA	NM_015678	exon31	c.C5309A	p.P1770Q	CAGATCCAGCATT	.	69.0	25.0	69.0	0.0	.	340	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23872640	23872640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MYH6	NM_002471	exon10	c.C815T	p.S272F	ACCCGGGACTTCT	.	36.0	13.0	60.0	0.0	.	274	.	.	Atlas-SNP
MIA2	117153	hgsc.bcm.edu	hg19	14	39716660	39716660	+	Silent	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MIA2	NM_054024	exon4	c.A882G	p.L294L	TGAACTAGCATCT	.	55.0	25.0	67.0	0.0	.	82	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85341894	85341894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ZNF592	NM_014630	exon8	c.C2812T	p.P938S	AGCCGCCCTGGCT	.	32.0	14.0	60.0	0.0	.	95	.	.	Atlas-SNP
RCCD1	91433	hgsc.bcm.edu	hg19	15	91500107	91500107	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	RCCD1	NM_001017919	exon2	c.G143A	p.W48X	CGAGCTGGAGCTA	.	27.0	13.0	41.0	0.0	.	9	.	.	Atlas-SNP
MYLK3	91807	hgsc.bcm.edu	hg19	16	46761274	46761274	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MYLK3	NM_182493	exon8	c.G1788A	p.E596E	GAAGAGCTCACCC	.	43.0	17.0	61.0	0.0	.	82	.	.	Atlas-SNP
CDH11	1009	hgsc.bcm.edu	hg19	16	65032623	65032623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CDH11	NM_001797	exon4	c.C365A	p.A122D	TACTGGGCTCTCT	.	77.0	39.0	102.0	0.0	.	260	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	T	rs121913343	bycluster;alternate_allele	TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	TP53_ENST00000455263,NS,adenocarcinoma,+1,1	TP53	NM_000546	exon8	c.C817A	p.R273S	AAACACGCACCTC	.	49.0	19.0	74.0	0.0	.	33396	.	.	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40049360	40049360	+	Silent	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ACLY	NM_001096	exon15	c.G1527T	p.V509V	GCCTTGCACGGCC	.	57.0	15.0	62.0	0.0	.	85	.	.	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	hg19	17	48683348	48683348	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	CACNA1G	NM_001256360	exon23	c.G4386A	p.W1462X	CCGGTGGGTCCGG	.	79.0	22.0	85.0	0.0	.	659	.	.	Atlas-SNP
SRSF1	6426	hgsc.bcm.edu	hg19	17	56082796	56082796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SRSF1	NM_006924	exon4	c.C718A	p.R240S	TATGACGGGGAGA	.	68.0	18.0	51.0	0.0	.	41	.	.	Atlas-SNP
MAP3K3	4215	hgsc.bcm.edu	hg19	17	61771085	61771085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MAP3K3	NM_203351	exon17	c.G1922A	p.R641K	GCCAGAGACCTTC	.	36.0	10.0	42.0	0.0	.	56	.	.	Atlas-SNP
SCN4A	6329	hgsc.bcm.edu	hg19	17	62045561	62045561	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SCN4A	NM_000334	exon6	c.G858A	p.P286P	GTTGAACGGCGGG	.	97.0	20.0	132.0	0.0	.	205	.	.	Atlas-SNP
MAP2K6	5608	hgsc.bcm.edu	hg19	17	67521046	67521046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MAP2K6	NM_002758	exon9	c.A668G	p.E223G	AGCCTGAAAGAAT	.	47.0	22.0	50.0	0.0	.	41	.	.	Atlas-SNP
COLEC12	81035	hgsc.bcm.edu	hg19	18	346626	346626	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	COLEC12	NM_130386	exon5	c.G996A	p.L332L	TTCCTCCAGTTGG	.	60.0	10.0	59.0	0.0	.	121	.	.	Atlas-SNP
SOGA2	23255	hgsc.bcm.edu	hg19	18	8718623	8718623	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	.	NM_015210	exon3	c.C175T	p.R59X	CTTATTCGAAGCC	.	55.0	21.0	79.0	0.0	.	.	.	.	Atlas-SNP
LOXHD1	125336	hgsc.bcm.edu	hg19	18	44126901	44126901	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	LOXHD1	NM_144612	exon22	c.C3471T	p.G1157G	GTCACCGCCTCCC	.	41.0	12.0	45.0	0.0	.	367	.	.	Atlas-SNP
ANGPTL4	51129	hgsc.bcm.edu	hg19	19	8436287	8436287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ANGPTL4	NM_139314	exon6	c.C920A	p.P307H	CTGCACCCGTGGC	.	56.0	16.0	71.0	0.0	.	21	.	.	Atlas-SNP
LGALS4	3960	hgsc.bcm.edu	hg19	19	39299453	39299453	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	LGALS4	NM_006149	exon3	c.G270A	p.K90K	GCTCCTCTTCCTC	.	132.0	21.0	95.0	0.0	.	39	.	.	Atlas-SNP
C19orf69	100170765	hgsc.bcm.edu	hg19	19	41949917	41949917	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	C19orf69	NM_001130514	exon2	c.C181T	p.L61L	GGGAACCTGCGCC	.	37.0	9.0	42.0	0.0	.	4	.	.	Atlas-SNP
ETHE1	23474	hgsc.bcm.edu	hg19	19	44015587	44015587	+	Splice_Site	SNP	A	A	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ETHE1	NM_014297	exon5	c.505+2T>A	.	CTGGTCACCTTGC	.	77.0	23.0	62.0	0.0	.	7	.	.	Atlas-SNP
LILRB5	10990	hgsc.bcm.edu	hg19	19	54759290	54759290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	LILRB5	NM_001081442	exon5	c.C811A	p.P271T	CCTGGGGCTGCTG	.	177.0	53.0	124.0	0.0	.	176	.	.	Atlas-SNP
ZNF582	147948	hgsc.bcm.edu	hg19	19	56895232	56895232	+	Silent	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ZNF582	NM_144690	exon5	c.G1554A	p.X518X	ATTAGCCTAGGCT	.	44.0	20.0	38.0	0.0	.	56	.	.	Atlas-SNP
ZNF419	79744	hgsc.bcm.edu	hg19	19	58004589	58004589	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	ZNF419	NM_001098491	exon5	c.C667G	p.Q223E	CAGCACCAGAGAC	.	147.0	33.0	113.0	0.0	.	134	.	.	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	hg19	19	59010879	59010879	+	Silent	SNP	G	G	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	SLC27A5	NM_012254	exon7	c.C1647T	p.D549D	GAGGCGGTCGCGG	.	91.0	21.0	75.0	0.0	.	58	.	.	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	hg19	20	15967381	15967381	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MACROD2	NM_080676	exon14	c.A995T	p.N332I	AAGAGAATGATTC	.	173.0	61.0	232.0	0.0	.	34	.	.	Atlas-SNP
PREX1	57580	hgsc.bcm.edu	hg19	20	47271890	47271890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PREX1	NM_020820	exon19	c.C2147A	p.P716Q	GTGTCCGGCTGGT	.	87.0	30.0	92.0	0.0	.	441	.	.	Atlas-SNP
B3GALT5	10317	hgsc.bcm.edu	hg19	21	41032560	41032560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	B3GALT5	NM_033170	exon3	c.T74C	p.M25T	TTAGCATGTACAG	.	63.0	18.0	65.0	0.0	.	40	.	.	Atlas-SNP
SLC5A4	6527	hgsc.bcm.edu	hg19	22	32633303	32633303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	SLC5A4,NS,carcinoma,0,1	SLC5A4	NM_014227	exon7	c.G592A	p.A198T	CCGAGGCCAAGCC	.	77.0	25.0	73.0	0.0	.	82	.	.	Atlas-SNP
PARVB	29780	hgsc.bcm.edu	hg19	22	44527389	44527389	+	Silent	SNP	G	G	C	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	PARVB	NM_001003828	exon6	c.G498C	p.L166L	CAAGCTGAATGTG	.	151.0	22.0	157.0	0.0	.	44	.	.	Atlas-SNP
NHSL2	340527	hgsc.bcm.edu	hg19	X	71358362	71358362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	NHSL2	NM_001013627	exon6	c.C964A	p.P322T	TCAGTTCCAGAAG	.	68.0	32.0	73.0	0.0	.	148	.	.	Atlas-SNP
MFSD4	148808	hgsc.bcm.edu	hg19	1	205568372	205568372	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-AADB-01A-11D-A40R-10	TCGA-DD-AADB-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6c88c0e3-7a9c-4f59-be35-f12dbd3a0676	be9289f1-a414-4a4f-a72d-ddbf960a9fcc	.	MFSD4	NM_181644	exon9	c.1481delT	p.L494fs	.	.	37.0	11.0	55.0	0.0	.	46	.	.	Atlas-INDEL