Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm CCDC17 149483 hgsc.bcm.edu hg19 1 46088962 46088962 + Silent SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CCDC17 NM_001114938 exon3 c.G420A p.A140A GAACAGCGCCCGC . 51.0 28.0 44.0 0.0 . 54 . . Atlas-SNP DDX20 11218 hgsc.bcm.edu hg19 1 112309297 112309297 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . DDX20 NM_007204 exon11 c.C2251A p.Q751K GAAGCCCAGGAAG . 212.0 59.0 165.0 0.0 . 50 . . Atlas-SNP GATAD2B 57459 hgsc.bcm.edu hg19 1 153788806 153788806 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . GATAD2B NM_020699 exon7 c.G1159T p.E387X TGAACTCGCTATT . 165.0 83.0 127.0 0.0 . 62 . . Atlas-SNP TNN 63923 hgsc.bcm.edu hg19 1 175067569 175067569 + Missense_Mutation SNP C C T rs199634558 bycluster TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . TNN NM_022093 exon9 c.C1957T p.R653C GTGGTGCGCTACA . 598.0 292.0 383.0 0.0 . 297 . . Atlas-SNP SDCCAG8 10806 hgsc.bcm.edu hg19 1 243589739 243589739 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SDCCAG8 NM_006642 exon16 c.G1864T p.A622S GAAATAGCTCAAC . 379.0 132.0 377.0 0.0 . 73 . . Atlas-SNP ZBTB18 10472 hgsc.bcm.edu hg19 1 244218178 244218178 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . . NM_205768 exon2 c.G1102T p.V368F CCCTACGTCTCCA . 94.0 44.0 85.0 0.0 . . . . Atlas-SNP ZNF672 79894 hgsc.bcm.edu hg19 1 249142142 249142142 + Silent SNP G G C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee ZNF672,caecum,carcinoma,0,1 ZNF672 NM_024836 exon4 c.G669C p.G223G CTCGGGGGAGAAA . 62.0 16.0 75.0 0.0 . 32 . . Atlas-SNP TMEM247 388946 hgsc.bcm.edu hg19 2 46707887 46707887 + Missense_Mutation SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . . NM_001145051 exon2 c.A461C p.E154A AGCAAGAGGCGGC . 101.0 19.0 117.0 0.0 . . . . Atlas-SNP UGP2 7360 hgsc.bcm.edu hg19 2 64114716 64114716 + Missense_Mutation SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . UGP2 NM_006759 exon8 c.A1252C p.M418L CTGACAATGAGTG . 197.0 67.0 181.0 0.0 . 38 . . Atlas-SNP VPS54 51542 hgsc.bcm.edu hg19 2 64176272 64176272 + Silent SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . VPS54 NM_016516 exon8 c.T1036C p.L346L TTTCTAATTCACA . 57.0 14.0 57.0 0.0 . 57 . . Atlas-SNP CD302 9936 hgsc.bcm.edu hg19 2 160654643 160654643 + Nonsense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CD302 NM_001198764 exon1 c.G67T p.G23X GCTTACCCGCGAC . 66.0 20.0 43.0 0.0 . 22 . . Atlas-SNP ITGA6 3655 hgsc.bcm.edu hg19 2 173355794 173355794 + Missense_Mutation SNP C C G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ITGA6 NM_000210 exon21 c.C2722G p.Q908E GAAAAACAGATAG . 383.0 127.0 349.0 0.0 . 171 . . Atlas-SNP PGAP1 80055 hgsc.bcm.edu hg19 2 197738476 197738476 + Missense_Mutation SNP G G C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PGAP1 NM_024989 exon15 c.C1433G p.S478C CTTGAAGACAATC . 165.0 53.0 182.0 0.0 . 84 . . Atlas-SNP CELSR3 1951 hgsc.bcm.edu hg19 3 48680218 48680218 + Missense_Mutation SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CELSR3 NM_001407 exon30 c.T8506C p.S2836P GGCCGGAGCGGGC . 62.0 38.0 83.0 0.0 . 237 . . Atlas-SNP PROK2 60675 hgsc.bcm.edu hg19 3 71830662 71830662 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PROK2 NM_001126128 exon2 c.C178A p.P60T CCATAGGTGTGCA . 152.0 76.0 224.0 0.0 . 13 . . Atlas-SNP CNTN3 5067 hgsc.bcm.edu hg19 3 74548904 74548904 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CNTN3 NM_020872 exon2 c.A88G p.K30E GTTCTTTGATAAA . 41.0 24.0 66.0 0.0 . 174 . . Atlas-SNP GOLIM4 27333 hgsc.bcm.edu hg19 3 167750442 167750442 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . GOLIM4 NM_014498 exon9 c.A1042G p.M348V GCTCCATTTCTTC . 265.0 49.0 123.0 0.0 . 71 . . Atlas-SNP PCYT1A 5130 hgsc.bcm.edu hg19 3 195997368 195997368 + Missense_Mutation SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PCYT1A NM_005017 exon3 c.G35A p.R12K CTCTTCCTTGCAT . 188.0 34.0 136.0 0.0 . 34 . . Atlas-SNP NR3C2 4306 hgsc.bcm.edu hg19 4 149115896 149115896 + Splice_Site SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NR3C2 NM_000901 exon5 c.2014+1G>T . AACTTACCTCCTA . 17.0 6.0 35.0 0.0 . 94 . . Atlas-SNP PDZD2 23037 hgsc.bcm.edu hg19 5 32087361 32087361 + Silent SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PDZD2 NM_178140 exon19 c.A3807G p.A1269A GCCTGCATCGCCC . 342.0 50.0 182.0 0.0 . 306 . . Atlas-SNP RREB1 6239 hgsc.bcm.edu hg19 6 7230408 7230408 + Silent SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . RREB1 NM_001003700 exon10 c.G2076T p.T692T GCGCACGCACAGT . 51.0 25.0 98.0 0.0 . 242 . . Atlas-SNP EDN1 1906 hgsc.bcm.edu hg19 6 12294631 12294631 + Missense_Mutation SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . EDN1 NM_001955 exon4 c.A527C p.Q176P TAAGACAAACCAG . 335.0 151.0 481.0 1.0 . 23 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38885133 38885133 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . DNAH8 NM_001206927 exon69 c.T10259C p.M3420T TTACTATGGATCC . 97.0 39.0 91.0 0.0 . 1239 . . Atlas-SNP SLC29A1 2030 hgsc.bcm.edu hg19 6 44197363 44197363 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SLC29A1 NM_004955 exon4 c.C149A p.S50Y ATGTGTCCTTGGT . 76.0 29.0 64.0 0.0 . 45 . . Atlas-SNP KIAA1244 57221 hgsc.bcm.edu hg19 6 138611075 138611075 + Missense_Mutation SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KIAA1244 NM_020340 exon18 c.A3017G p.H1006R GAAGCCACAACCC . 206.0 59.0 192.0 0.0 . 236 . . Atlas-SNP PHACTR2 9749 hgsc.bcm.edu hg19 6 144086750 144086750 + Silent SNP C C T rs200488499 by1000genomes;alternate_allele TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PHACTR2 NM_001100164 exon6 c.C1047T p.P349P GGCCCCCCCTCTC . 107.0 48.0 126.0 0.0 . 99 . C|1.000;G|0.000 Atlas-SNP AUTS2 26053 hgsc.bcm.edu hg19 7 70255636 70255636 + Missense_Mutation SNP G G A rs371317370 TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . AUTS2 NM_015570 exon19 c.G3434A p.R1145Q ACGAGCGGGGAGG . 143.0 54.0 124.0 0.0 . 173 . . Atlas-SNP PON3 5446 hgsc.bcm.edu hg19 7 95019498 95019498 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PON3 NM_000940 exon3 c.A169G p.I57V GAAGTATATCAAT . 112.0 40.0 109.0 0.0 . 59 . . Atlas-SNP DLX6 1750 hgsc.bcm.edu hg19 7 96635420 96635420 + Missense_Mutation SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee .,1 DLX6 NM_005222 exon1 c.A131C p.Q44P AGCAACAGCCGCC . 46.0 4.0 32.0 0.0 . 37 . . Atlas-SNP COG5 10466 hgsc.bcm.edu hg19 7 106898762 106898762 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . COG5 NM_006348 exon15 c.G1735T p.A579S CTACTGCCACATT . 119.0 35.0 107.0 0.0 . 78 . . Atlas-SNP TMEM68 137695 hgsc.bcm.edu hg19 8 56668880 56668880 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . TMEM68 NM_152417 exon4 c.A416G p.Y139C ATGAAATAGTAAA . 92.0 27.0 108.0 0.0 . 25 . . Atlas-SNP CNBD1 168975 hgsc.bcm.edu hg19 8 87951908 87951908 + Silent SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CNBD1 NM_173538 exon4 c.T357C p.H119H AGCACATGGTGGC . 760.0 143.0 411.0 0.0 . 206 . . Atlas-SNP DCAF4L2 138009 hgsc.bcm.edu hg19 8 88885852 88885852 + Silent SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . DCAF4L2 NM_152418 exon1 c.G348T p.P116P TTTGTGCGGGTAT . 167.0 34.0 104.0 0.0 . 187 . . Atlas-SNP LRP12 29967 hgsc.bcm.edu hg19 8 105503525 105503525 + Silent SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . LRP12 NM_013437 exon7 c.T1956C p.S652S ATCATCAGACTCC . 160.0 100.0 104.0 0.0 . 124 . . Atlas-SNP KLHL38 340359 hgsc.bcm.edu hg19 8 124664210 124664210 + Silent SNP C C G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KLHL38 NM_001081675 exon1 c.G957C p.P319P CCGTGTCGGGAGT . 191.0 76.0 122.0 0.0 . 81 . . Atlas-SNP PUF60 22827 hgsc.bcm.edu hg19 8 144900554 144900554 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PUF60 NM_078480 exon6 c.A499G p.M167V GCTTCATGGTGAC . 195.0 117.0 108.0 0.0 . 26 . . Atlas-SNP KANK1 23189 hgsc.bcm.edu hg19 9 711598 711598 + Missense_Mutation SNP G G C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KANK1 NM_001256876 exon7 c.G832C p.E278Q GAGCTGGAGGAGC . 58.0 34.0 118.0 0.0 . 231 . . Atlas-SNP PSIP1 11168 hgsc.bcm.edu hg19 9 15469957 15469957 + Nonsense_Mutation SNP T T A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PSIP1 NM_001128217 exon11 c.A1012T p.K338X CTTTCTTAACTTC . 13.0 5.0 40.0 0.0 . 93 . . Atlas-SNP DENND4C 55667 hgsc.bcm.edu hg19 9 19316742 19316742 + Missense_Mutation SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee DENND4C,NS,carcinoma,-1,1 DENND4C NM_017925 exon12 c.C1712T p.A571V TTATGGCGTCTAT . 69.0 32.0 118.0 0.0 . 120 . . Atlas-SNP KIAA1958 158405 hgsc.bcm.edu hg19 9 115337110 115337110 + Silent SNP T T G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KIAA1958 NM_133465 exon2 c.T750G p.A250A GTCTGCTAAACTG . 102.0 6.0 93.0 0.0 . 52 . . Atlas-SNP RAPGEF1 2889 hgsc.bcm.edu hg19 9 134477527 134477527 + Missense_Mutation SNP C C G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . RAPGEF1 NM_198679 exon12 c.G1918C p.A640P TCCCAGCCGGTGG . 62.0 18.0 53.0 0.0 . 126 . . Atlas-SNP SDCCAG3 10807 hgsc.bcm.edu hg19 9 139301664 139301664 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SDCCAG3 NM_001039707 exon5 c.A752G p.D251G GCAAAGTCTGCGC . 122.0 40.0 120.0 0.0 . 41 . . Atlas-SNP SYNPO2L 79933 hgsc.bcm.edu hg19 10 75407832 75407832 + Silent SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SYNPO2L NM_001114133 exon4 c.C1578A p.P526P GTGGCTGGGAACC . 74.0 4.0 121.0 0.0 . 118 . . Atlas-SNP NRG3 10718 hgsc.bcm.edu hg19 10 84118543 84118543 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NRG3 NM_001165972 exon2 c.G872T p.R291L CCTGCCGAGACAA . 163.0 48.0 158.0 0.0 . 301 . . Atlas-SNP INPP5A 3632 hgsc.bcm.edu hg19 10 134595384 134595384 + Missense_Mutation SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee INPP5A_ENST00000445580,NS,carcinoma,+1,1 INPP5A NM_005539 exon15 c.G1178A p.R393Q CCTTCCGAATCAT . 106.0 36.0 133.0 0.0 . 77 . . Atlas-SNP MUC5B 727897 hgsc.bcm.edu hg19 11 1262639 1262639 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . MUC5B NM_002458 exon31 c.C4529A p.T1510K AGTGGACAGAGTG . 144.0 52.0 143.0 0.0 . 473 . . Atlas-SNP NLRP14 338323 hgsc.bcm.edu hg19 11 7064609 7064609 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NLRP14 NM_176822 exon4 c.G1352T p.G451V GGCTTGGGTTAAC . 133.0 54.0 135.0 0.0 . 187 . . Atlas-SNP VWCE 220001 hgsc.bcm.edu hg19 11 61032665 61032665 + Missense_Mutation SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . VWCE NM_152718 exon17 c.C1985T p.S662F ACGGGGGAACAGG . 341.0 102.0 325.0 0.0 . 84 . . Atlas-SNP DAGLA 747 hgsc.bcm.edu hg19 11 61511843 61511843 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . DAGLA NM_006133 exon20 c.C3011A p.T1004K ACCTGACGCCCAC . 138.0 51.0 156.0 0.0 . 109 . . Atlas-SNP KIRREL3 84623 hgsc.bcm.edu hg19 11 126316746 126316746 + Missense_Mutation SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KIRREL3 NM_032531 exon9 c.C1033T p.L345F CCACGAGCAAGGA . 95.0 29.0 58.0 0.0 . 183 . . Atlas-SNP COL2A1 1280 hgsc.bcm.edu hg19 12 48388212 48388212 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . COL2A1 NM_001844 exon12 c.C811A p.P271T CCTGAGGACCAGG . 163.0 47.0 110.0 0.0 . 368 . . Atlas-SNP NAV3 89795 hgsc.bcm.edu hg19 12 78515815 78515815 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NAV3 NM_014903 exon16 c.T3845C p.L1282S CCACATTAGCGCG . 122.0 41.0 124.0 0.0 . 506 . . Atlas-SNP MED13L 23389 hgsc.bcm.edu hg19 12 116413042 116413042 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . MED13L NM_015335 exon25 c.A5665G p.M1889V ATGTCATTTGGAC . 152.0 63.0 130.0 0.0 . 193 . . Atlas-SNP PPP2R5E 5529 hgsc.bcm.edu hg19 14 63881864 63881864 + Silent SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PPP2R5E NM_006246 exon5 c.A543G p.V181V CTGTAATACAAAT . 196.0 62.0 205.0 0.0 . 43 . . Atlas-SNP STON2 85439 hgsc.bcm.edu hg19 14 81743600 81743600 + Silent SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee STON2,right_upper_lobe,carcinoma,0,1 STON2 NM_001256430 exon6 c.C2055T p.T685T AGGCAAGGTCTTC . 150.0 93.0 169.0 0.0 . 94 . . Atlas-SNP EMP2 2013 hgsc.bcm.edu hg19 16 10631932 10631932 + Splice_Site SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . EMP2 NM_001424 exon5 c.170-1G>T . AGTACTCTGCGGG . 108.0 42.0 106.0 0.0 . 21 . . Atlas-SNP ZNF469 84627 hgsc.bcm.edu hg19 16 88494565 88494565 + Silent SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ZNF469 NM_001127464 exon1 c.C687A p.A229A CCAGGCCAGTGGG . 229.0 93.0 205.0 0.0 . 121 . . Atlas-SNP PLD2 5338 hgsc.bcm.edu hg19 17 4719981 4719981 + Missense_Mutation SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PLD2 NM_001243108 exon15 c.G1522A p.G508S TGGCTGGGCAAGG . 90.0 44.0 136.0 0.0 . 138 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578555 7578555 + Splice_Site SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee TP53_ENST00000545858,NS,carcinoma,0,58 TP53 NM_000546 exon6 c.376-1G>A . GGAGTACTGTAGG . 57.0 30.0 93.0 0.0 . 33396 . . Atlas-SNP MYH13 8735 hgsc.bcm.edu hg19 17 10206563 10206563 + Missense_Mutation SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . MYH13 NM_003802 exon39 c.G5617A p.D1873N GCTTGTCCACCAG . 80.0 30.0 104.0 0.0 . 533 . . Atlas-SNP SPECC1 92521 hgsc.bcm.edu hg19 17 20135682 20135682 + Missense_Mutation SNP G G A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SPECC1 NM_001033553 exon7 c.G2315A p.G772D TGCAGGGCCACGG . 84.0 27.0 98.0 0.0 . 100 . . Atlas-SNP SLC46A1 113235 hgsc.bcm.edu hg19 17 26731821 26731821 + Nonsense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SLC46A1 NM_001242366 exon2 c.C894A p.C298X GTCCCAGCAGAGG . 285.0 143.0 195.0 0.0 . 17 . . Atlas-SNP KIAA0100 9703 hgsc.bcm.edu hg19 17 26946763 26946763 + Missense_Mutation SNP G G C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . KIAA0100 NM_014680 exon31 c.C5551G p.L1851V CAAGCAGATTCTC . 109.0 31.0 87.0 0.0 . 175 . . Atlas-SNP TEX14 56155 hgsc.bcm.edu hg19 17 56707834 56707834 + Missense_Mutation SNP T T A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee TEX14,NS,NS,0,1 TEX14 NM_198393 exon3 c.A218T p.D73V AGAACATCAACGA . 329.0 68.0 138.0 2.0 . 343 . . Atlas-SNP NDUFV2 4729 hgsc.bcm.edu hg19 18 9117876 9117876 + Missense_Mutation SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NDUFV2 NM_021074 exon2 c.A95G p.N32S TGCAAAATGGAGC . 366.0 101.0 356.0 0.0 . 17 . . Atlas-SNP DSC3 1825 hgsc.bcm.edu hg19 18 28598662 28598662 + Missense_Mutation SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . DSC3 NM_024423 exon8 c.T1047G p.N349K ATTATCATTTGAA . 51.0 15.0 53.0 0.0 . 225 . . Atlas-SNP ST8SIA5 29906 hgsc.bcm.edu hg19 18 44268787 44268787 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ST8SIA5 NM_013305 exon4 c.C407A p.T136N CCACTGGTGTCCA . 115.0 61.0 82.0 0.0 . 57 . . Atlas-SNP CRB3 92359 hgsc.bcm.edu hg19 19 6464770 6464770 + Missense_Mutation SNP C C G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CRB3 NM_174881 exon2 c.C58G p.R20G CTGGCCCGCTGGG . 26.0 12.0 39.0 0.0 . 8 . . Atlas-SNP CPAMD8 27151 hgsc.bcm.edu hg19 19 17017877 17017877 + Silent SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CPAMD8 NM_015692 exon30 c.G4053A p.A1351A CAGGGGCGCAGCA . 108.0 57.0 131.0 0.0 . 192 . . Atlas-SNP RPL18A 6142 hgsc.bcm.edu hg19 19 17972267 17972267 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . RPL18A NM_000980 exon2 c.G184T p.V62F GAGATTGTCTACT . 32.0 12.0 60.0 0.0 . 15 . . Atlas-SNP ZNF208 7757 hgsc.bcm.edu hg19 19 22156515 22156515 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ZNF208 NM_007153 exon4 c.A1321G p.M441V GTTCCATAAGGTT . 149.0 29.0 122.0 0.0 . 817 . . Atlas-SNP RYR1 6261 hgsc.bcm.edu hg19 19 39034235 39034235 + Silent SNP A A C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . RYR1 NM_000540 exon86 c.A11842C p.R3948R GGCAAGAGGAACT . 112.0 17.0 94.0 0.0 . 708 . . Atlas-SNP PSG3 5671 hgsc.bcm.edu hg19 19 43236995 43236995 + Missense_Mutation SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PSG3 NM_021016 exon3 c.G650A p.C217Y ATTTCACATTCAT . 145.0 88.0 73.0 0.0 . 82 . . Atlas-SNP NKPD1 284353 hgsc.bcm.edu hg19 19 45656158 45656158 + Missense_Mutation SNP C C A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . NKPD1 NM_198478 exon4 c.G1537T p.D513Y CGTTATCGGCCGT . 152.0 80.0 129.0 0.0 . 46 . . Atlas-SNP SULF2 55959 hgsc.bcm.edu hg19 20 46365492 46365492 + Missense_Mutation SNP T T C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . SULF2 NM_001161841 exon3 c.A370G p.S124G TGCGGCTCTCGTG . 91.0 36.0 88.0 0.0 . 131 . . Atlas-SNP PCNT 5116 hgsc.bcm.edu hg19 21 47851867 47851867 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PCNT NM_006031 exon38 c.G8489T p.C2830F AGCACTGTGAGGC . 53.0 26.0 104.0 0.0 . 283 . . Atlas-SNP C22orf29 79680 hgsc.bcm.edu hg19 22 19839750 19839750 + Missense_Mutation SNP C C T rs9618711 bycluster TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee C22orf29,NS,carcinoma,-1,1 C22orf29 NM_024627 exon3 c.G35A p.R12H GGAATGCGAGGGC . 132.0 42.0 127.0 0.0 . 23 . . Atlas-SNP AMELX 265 hgsc.bcm.edu hg19 X 11316227 11316227 + Nonsense_Mutation SNP C C G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . AMELX NM_182680 exon4 c.C107G p.S36X AGAACTCACATTC . 215.0 88.0 151.0 0.0 . 31 . . Atlas-SNP TLR8 51311 hgsc.bcm.edu hg19 X 12940017 12940017 + Missense_Mutation SNP G G C novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . TLR8 NM_138636 exon2 c.G2858C p.S953T CAAAAAGCTGGAA . 398.0 318.0 223.0 0.0 . 134 . . Atlas-SNP PRPS1 5631 hgsc.bcm.edu hg19 X 106890949 106890949 + Missense_Mutation SNP A A G novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PRPS1 NM_002764 exon6 c.A818G p.N273S TCACCAATACCAT . 101.0 5.0 106.0 0.0 . 33 . . Atlas-SNP GPR101 83550 hgsc.bcm.edu hg19 X 136112559 136112559 + Silent SNP C C T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . GPR101 NM_054021 exon1 c.G1275A p.V425V GACATCCACCCAC . 63.0 48.0 82.0 0.0 . 96 . . Atlas-SNP PLXNB3 5365 hgsc.bcm.edu hg19 X 153033156 153033156 + Missense_Mutation SNP G G T novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PLXNB3 NM_001163257 exon4 c.G943T p.A315S CAGGCCGCCTTCC . 95.0 72.0 111.0 0.0 . 208 . . Atlas-SNP PHF20L1 51105 hgsc.bcm.edu hg19 8 133806672 133806673 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . PHF20L1 NM_016018 exon3 c.100_101insA p.E34fs . . 271.0 95.0 163.0 0.0 . 129 . . Atlas-INDEL TMEM247 388946 hgsc.bcm.edu hg19 2 46707883 46707884 + Frame_Shift_Ins INS - - GG novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee ENSG00000187600_ENST00000434431,NS,carcinoma,-1,2 . NM_001145051 exon2 c.457_458insGG p.Q153fs . . 119.0 27.0 129.0 0.0 . . . . Atlas-INDEL ZNF638 27332 hgsc.bcm.edu hg19 2 71576746 71576746 + Frame_Shift_Del DEL A A - novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ZNF638 NM_001252612 exon2 c.661delG p.E221fs . . 138.0 37.0 116.0 0.0 . 179 . . Atlas-INDEL CAST 831 hgsc.bcm.edu hg19 5 96062545 96062546 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . CAST NM_001190442 exon5 c.69_70insA p.K23fs . . 75.0 40.0 157.0 0.0 . 58 . . Atlas-INDEL APC 324 hgsc.bcm.edu hg19 5 112175951 112175952 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee APC,colon,carcinoma,-1,58 APC NM_001127510 exon17 c.4660_4661insA p.E1554fs . . 155.0 62.0 269.0 0.0 . 4158 . . Atlas-INDEL OTOF 9381 hgsc.bcm.edu hg19 2 26693553 26693554 + In_Frame_Ins INS - - CTT novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . OTOF NM_194248 exon32 c.3931_3932insAAG p.G1311delinsKG . . 47.0 14.0 50.0 0.0 . 524 . . Atlas-INDEL ATR 545 hgsc.bcm.edu hg19 3 142188996 142188997 + Frame_Shift_Ins INS - - A novel TCGA-DD-AADC-01A-11D-A40R-10 TCGA-DD-AADC-10A-01D-A40U-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 7bce9063-4ae3-4e6b-864c-dcc9f551beb5 64941a85-6c7d-475d-b59f-9457c23db2ee . ATR NM_001184 exon37 c.6251_6252insT p.Y2084fs . . 109.0 31.0 89.0 0.0 . 285 . . Atlas-INDEL